------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 3 sequences from file HMGI_Y PATTERN CONSERVATION: CM: min Nr of Seqs to Match 3 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename HMGI_Y.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: HMGI_HUMAN 106 HMGY_HUMAN 95 HMGY_MOUSE 95 Pratt run started at Thu Feb 6 19:54:50 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 199.1623 3( 3) R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E-Q 2: 199.1623 3( 3) P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E 3: 199.1623 3( 3) R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E 4: 199.1623 3( 3) K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E 5: 199.1623 3( 3) P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S 6: 199.1623 3( 3) T-P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S 7: 199.1623 3( 3) P-T-P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E 8: 199.1623 3( 3) V-P-T-P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q 9: 199.1623 3( 3) E-V-P-T-P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S 10: 199.1623 3( 3) S-E-V-P-T-P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I 11: 199.1623 3( 3) P-S-E-V-P-T-P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G 12: 199.1623 3( 3) E-P-S-E-V-P-T-P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E 13: 199.1623 3( 3) K-E-P-S-E-V-P-T-P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E 14: 194.9923 3( 3) G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E-Q 15: 190.8223 3( 3) R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E-Q 16: 186.6522 3( 3) P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E-Q 17: 182.4822 3( 3) K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E-Q 18: 178.3121 3( 3) G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E-Q 19: 174.1421 3( 3) S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E-Q 20: 169.9720 3( 3) K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E-Q Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 199.1623 3( 3) R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E-Q B 2: 199.1623 3( 3) P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E C 3: 199.1623 3( 3) R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E D 4: 199.1623 3( 3) K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E E 5: 199.1623 3( 3) P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S F 6: 199.1623 3( 3) T-P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S G 7: 199.1623 3( 3) P-T-P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E H 8: 199.1623 3( 3) V-P-T-P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q I 9: 199.1623 3( 3) E-V-P-T-P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S J 10: 199.1623 3( 3) S-E-V-P-T-P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I K 11: 199.1623 3( 3) P-S-E-V-P-T-P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G L 12: 199.1623 3( 3) E-P-S-E-V-P-T-P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E M 13: 199.1623 3( 3) K-E-P-S-E-V-P-T-P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E N 14: 194.9923 3( 3) G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E-Q O 15: 190.8223 3( 3) R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E-Q P 16: 186.6522 3( 3) P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E-Q Q 17: 182.4822 3( 3) K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E-Q R 18: 178.3121 3( 3) G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E-Q S 19: 174.1421 3( 3) S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E-Q T 20: 169.9720 3( 3) K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E-Q Best patterns with alignements: fitness hits(seqs) Pattern A 1: 199.1623 3( 3) R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E-Q Occurences: 3(3) HMGI_HUMAN : 57- 106: tpkrp RGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGI_HUMAN : 57- 106: tpkrp RGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGY_HUMAN : 46- 95: tpkrp RGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGY_HUMAN : 46- 95: tpkrp RGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGY_MOUSE : 46- 95: tpkrp RGRPKGSKNKGAAKTRKvTTa-PGRKPRGRPKKLEKEEEEGISQESSEEEQ B 2: 199.1623 3( 3) P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E Occurences: 3(3) HMGI_HUMAN : 56- 105: ptpkr PRGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQESSEEE q HMGI_HUMAN : 56- 105: ptpkr PRGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQESSEEE q HMGY_HUMAN : 45- 94: ptpkr PRGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQESSEEE q HMGY_HUMAN : 45- 94: ptpkr PRGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQESSEEE q HMGY_MOUSE : 45- 94: ptpkr PRGRPKGSKNKGAAKTRKvTTa-PGRKPRGRPKKLEKEEEEGISQESSEEE q C 3: 199.1623 3( 3) R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E Occurences: 3(3) HMGI_HUMAN : 55- 104: vptpk RPRGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQESSEE eq HMGI_HUMAN : 55- 104: vptpk RPRGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQESSEE eq HMGY_HUMAN : 44- 93: vptpk RPRGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQESSEE eq HMGY_HUMAN : 44- 93: vptpk RPRGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQESSEE eq HMGY_MOUSE : 44- 93: vptpk RPRGRPKGSKNKGAAKTRKvTTa-PGRKPRGRPKKLEKEEEEGISQESSEE eq D 4: 199.1623 3( 3) K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E Occurences: 3(3) HMGI_HUMAN : 54- 103: evptp KRPRGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQESSE eeq HMGI_HUMAN : 54- 103: evptp KRPRGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQESSE eeq HMGY_HUMAN : 43- 92: evptp KRPRGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQESSE eeq HMGY_HUMAN : 43- 92: evptp KRPRGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQESSE eeq HMGY_MOUSE : 43- 92: evptp KRPRGRPKGSKNKGAAKTRKvTTa-PGRKPRGRPKKLEKEEEEGISQESSE eeq E 5: 199.1623 3( 3) P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S Occurences: 3(3) HMGI_HUMAN : 53- 102: sevpt PKRPRGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQESS eeeq HMGI_HUMAN : 53- 102: sevpt PKRPRGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQESS eeeq HMGY_HUMAN : 42- 91: sevpt PKRPRGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQESS eeeq HMGY_HUMAN : 42- 91: sevpt PKRPRGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQESS eeeq HMGY_MOUSE : 42- 91: sevpt PKRPRGRPKGSKNKGAAKTRKvTTa-PGRKPRGRPKKLEKEEEEGISQESS eeeq F 6: 199.1623 3( 3) T-P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S Occurences: 3(3) HMGI_HUMAN : 52- 101: psevp TPKRPRGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQES seeeq HMGI_HUMAN : 52- 101: psevp TPKRPRGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQES seeeq HMGY_HUMAN : 41- 90: psevp TPKRPRGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQES seeeq HMGY_HUMAN : 41- 90: psevp TPKRPRGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQES seeeq HMGY_MOUSE : 41- 90: psevp TPKRPRGRPKGSKNKGAAKTRKvTTa-PGRKPRGRPKKLEKEEEEGISQES seeeq G 7: 199.1623 3( 3) P-T-P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E Occurences: 3(3) HMGI_HUMAN : 51- 100: epsev PTPKRPRGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQE sseee HMGI_HUMAN : 51- 100: epsev PTPKRPRGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQE sseee HMGY_HUMAN : 40- 89: epsev PTPKRPRGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQE sseee HMGY_HUMAN : 40- 89: epsev PTPKRPRGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQE sseee HMGY_MOUSE : 40- 89: epsev PTPKRPRGRPKGSKNKGAAKTRKvTTa-PGRKPRGRPKKLEKEEEEGISQE sseee H 8: 199.1623 3( 3) V-P-T-P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q Occurences: 3(3) HMGI_HUMAN : 50- 99: kepse VPTPKRPRGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQ essee HMGI_HUMAN : 50- 99: kepse VPTPKRPRGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQ essee HMGY_HUMAN : 39- 88: kepse VPTPKRPRGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQ essee HMGY_HUMAN : 39- 88: kepse VPTPKRPRGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQ essee HMGY_MOUSE : 39- 88: kepse VPTPKRPRGRPKGSKNKGAAKTRKvTTa-PGRKPRGRPKKLEKEEEEGISQ essee I 9: 199.1623 3( 3) E-V-P-T-P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S Occurences: 3(3) HMGI_HUMAN : 49- 98: qkeps EVPTPKRPRGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGIS qesse HMGI_HUMAN : 49- 98: qkeps EVPTPKRPRGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGIS qesse HMGY_HUMAN : 38- 87: pkeps EVPTPKRPRGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGIS qesse HMGY_HUMAN : 38- 87: pkeps EVPTPKRPRGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGIS qesse HMGY_MOUSE : 38- 87: pkeps EVPTPKRPRGRPKGSKNKGAAKTRKvTTa-PGRKPRGRPKKLEKEEEEGIS qesse J 10: 199.1623 3( 3) S-E-V-P-T-P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I Occurences: 3(3) HMGI_HUMAN : 48- 97: sqkep SEVPTPKRPRGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGI sqess HMGI_HUMAN : 48- 97: sqkep SEVPTPKRPRGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGI sqess HMGY_HUMAN : 37- 86: ppkep SEVPTPKRPRGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGI sqess HMGY_HUMAN : 37- 86: ppkep SEVPTPKRPRGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGI sqess HMGY_MOUSE : 37- 86: ppkep SEVPTPKRPRGRPKGSKNKGAAKTRKvTTa-PGRKPRGRPKKLEKEEEEGI sqess K 11: 199.1623 3( 3) P-S-E-V-P-T-P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G Occurences: 3(3) HMGI_HUMAN : 47- 96: gsqke PSEVPTPKRPRGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEG isqes HMGI_HUMAN : 47- 96: gsqke PSEVPTPKRPRGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEG isqes HMGY_HUMAN : 36- 85: qppke PSEVPTPKRPRGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEG isqes HMGY_HUMAN : 36- 85: qppke PSEVPTPKRPRGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEG isqes HMGY_MOUSE : 36- 85: qppke PSEVPTPKRPRGRPKGSKNKGAAKTRKvTTa-PGRKPRGRPKKLEKEEEEG isqes L 12: 199.1623 3( 3) E-P-S-E-V-P-T-P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E Occurences: 3(3) HMGI_HUMAN : 46- 95: vgsqk EPSEVPTPKRPRGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEE gisqe HMGI_HUMAN : 46- 95: vgsqk EPSEVPTPKRPRGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEE gisqe HMGY_HUMAN : 35- 84: kqppk EPSEVPTPKRPRGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEE gisqe HMGY_HUMAN : 35- 84: kqppk EPSEVPTPKRPRGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEE gisqe HMGY_MOUSE : 35- 84: kqppk EPSEVPTPKRPRGRPKGSKNKGAAKTRKvTTa-PGRKPRGRPKKLEKEEEE gisqe M 13: 199.1623 3( 3) K-E-P-S-E-V-P-T-P-K-R-P-R-G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E Occurences: 3(3) HMGI_HUMAN : 45- 94: lvgsq KEPSEVPTPKRPRGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEE egisq HMGI_HUMAN : 45- 94: lvgsq KEPSEVPTPKRPRGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEE egisq HMGY_HUMAN : 34- 83: rkqpp KEPSEVPTPKRPRGRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEE egisq HMGY_HUMAN : 34- 83: rkqpp KEPSEVPTPKRPRGRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEE egisq HMGY_MOUSE : 34- 83: rkqpp KEPSEVPTPKRPRGRPKGSKNKGAAKTRKvTTa-PGRKPRGRPKKLEKEEE egisq N 14: 194.9923 3( 3) G-R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E-Q Occurences: 3(3) HMGI_HUMAN : 58- 106: pkrpr GRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGI_HUMAN : 58- 106: pkrpr GRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGY_HUMAN : 47- 95: pkrpr GRPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGY_HUMAN : 47- 95: pkrpr GRPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGY_MOUSE : 47- 95: pkrpr GRPKGSKNKGAAKTRKvTTa-PGRKPRGRPKKLEKEEEEGISQESSEEEQ O 15: 190.8223 3( 3) R-P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E-Q Occurences: 3(3) HMGI_HUMAN : 59- 106: krprg RPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGI_HUMAN : 59- 106: krprg RPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGY_HUMAN : 48- 95: krprg RPKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGY_HUMAN : 48- 95: krprg RPKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGY_MOUSE : 48- 95: krprg RPKGSKNKGAAKTRKvTTa-PGRKPRGRPKKLEKEEEEGISQESSEEEQ P 16: 186.6522 3( 3) P-K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E-Q Occurences: 3(3) HMGI_HUMAN : 60- 106: rprgr PKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGI_HUMAN : 60- 106: rprgr PKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGY_HUMAN : 49- 95: rprgr PKGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGY_HUMAN : 49- 95: rprgr PKGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGY_MOUSE : 49- 95: rprgr PKGSKNKGAAKTRKvTTa-PGRKPRGRPKKLEKEEEEGISQESSEEEQ Q 17: 182.4822 3( 3) K-G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E-Q Occurences: 3(3) HMGI_HUMAN : 61- 106: prgrp KGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGI_HUMAN : 61- 106: prgrp KGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGY_HUMAN : 50- 95: prgrp KGSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGY_HUMAN : 50- 95: prgrp KGSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGY_MOUSE : 50- 95: prgrp KGSKNKGAAKTRKvTTa-PGRKPRGRPKKLEKEEEEGISQESSEEEQ R 18: 178.3121 3( 3) G-S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E-Q Occurences: 3(3) HMGI_HUMAN : 62- 106: rgrpk GSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGI_HUMAN : 62- 106: rgrpk GSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGY_HUMAN : 51- 95: rgrpk GSKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGY_HUMAN : 51- 95: rgrpk GSKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGY_MOUSE : 51- 95: rgrpk GSKNKGAAKTRKvTTa-PGRKPRGRPKKLEKEEEEGISQESSEEEQ S 19: 174.1421 3( 3) S-K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E-Q Occurences: 3(3) HMGI_HUMAN : 63- 106: grpkg SKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGI_HUMAN : 63- 106: grpkg SKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGY_HUMAN : 52- 95: grpkg SKNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGY_HUMAN : 52- 95: grpkg SKNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGY_MOUSE : 52- 95: grpkg SKNKGAAKTRKvTTa-PGRKPRGRPKKLEKEEEEGISQESSEEEQ T 20: 169.9720 3( 3) K-N-K-G-A-A-K-T-R-K-x(0,1)-T-T-x(1,2)-P-G-R-K-P-R-G-R-P-K-K-L-E-K-E-E-E-E-G-I-S-Q-E-S-S-E-E-E-Q Occurences: 3(3) HMGI_HUMAN : 64- 106: rpkgs KNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGI_HUMAN : 64- 106: rpkgs KNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGY_HUMAN : 53- 95: rpkgs KNKGAAKTRKtTTt-PGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGY_HUMAN : 53- 95: rpkgs KNKGAAKTRK-TTttPGRKPRGRPKKLEKEEEEGISQESSEEEQ HMGY_MOUSE : 53- 95: rpkgs KNKGAAKTRKvTTa-PGRKPRGRPKKLEKEEEEGISQESSEEEQ Number of patterns evaluated by Pratt:27525 Total running time: 2 seconds