------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 12 sequences from file HMG14_17 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 12 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename HMG14_17.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: H6_ONCMY 69 HG14_BOVIN 100 HG14_CHICK 102 HG14_HUMAN 99 HG14_MOUSE 95 HG15_CHICK 104 HG17_BOVIN 89 HG17_CHICK 89 HG17_HUMAN 89 HG17_MOUSE 89 HG17_PIG 89 HG17_RAT 89 Pratt run started at Thu Feb 6 19:54:43 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 57.3807 12( 12) P-x-R-R-S-A-R-L-S-A-x-P-x(0,1)-P-x(0,1)-K-x(3)-K-x-K 2: 53.2107 12( 12) R-R-S-A-R-L-S-A-x-P-x(0,1)-P-x(0,1)-K-x(3)-K-x-K 3: 49.0406 12( 12) R-S-A-R-L-S-A-x-P-x(0,1)-P-x(0,1)-K-x(3)-K-x-K 4: 49.0406 15( 12) E-x(0,1)-P-x-R-R-S-A-R-L-S-A-x-P-x(0,1)-P 5: 44.8706 12( 12) S-A-R-L-S-A-x-P-x(0,1)-P-x(0,1)-K-x(3)-K-x-K 6: 40.7005 12( 12) A-R-L-S-A-x-P-x(0,1)-P-x(0,1)-K-x(3)-K-x-K 7: 36.5305 12( 12) R-L-S-A-x-P-x(0,1)-P-x(0,1)-K-x(3)-K-x-K 8: 32.3604 12( 12) L-S-A-x-P-x(0,1)-P-x(0,1)-K-x(3)-K-x-K 9: 27.6904 12( 12) R-x(5)-A-x(0,1)-K-P-x(1,3)-K-x(5)-K-x(4)-K 10: 24.0203 12( 12) K-x(5)-K-K-A-x(1,2)-K-x(0,1)-K 11: 24.0203 12( 12) A-x-P-x(0,1)-P-x(0,1)-K-x(3)-K-x-K 12: 24.0203 12( 12) S-x(2)-P-x(0,1)-P-x(0,1)-K-x(3)-K-x-K 13: 23.5203 14( 12) A-K-x(0,1)-P-x(1,3)-K-x(5)-K-x(4)-K 14: 23.5203 15( 12) A-x(0,1)-K-P-x(1,3)-K-x(5)-K-x(4)-K 15: 23.5203 15( 12) A-x(0,1)-K-x(0,2)-P-x-K-x(5)-K-x(4)-K 16: 23.5203 12( 12) K-x(5)-K-K-A-x(3,4)-K-x(1,3)-K 17: 23.5203 12( 12) S-A-R-x(2,4)-P-x(0,1)-P-x(5)-K 18: 23.0203 12( 12) A-K-P-x(1,3)-K-x(2,4)-P-K 19: 20.8503 13( 12) P-x-R-x-S-A-x(5)-P 20: 20.3503 13( 12) K-x(3)-K-x-K-K-x(4,5)-K Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 83.9814 12( 12) P-x-R-R-S-A-R-L-S-A-[KR]-P-x(0,1)-P-x(0,1)-K-[APV]-[ADE]-[APT]-K-[AP]-K-x-[AL]-[AP]-[AGP]-x-[DK] B 2: 83.2721 15( 12) E-x(0,1)-P-x-R-R-S-A-R-L-S-A-[KR]-P-x(0,1)-P-x(2)-[APV]-[ADE]-x(3)-K-x-[AL]-[AP]-[AGP]-K-[DK]-x(3)-[ADGNV]-x-[DK] C 3: 79.8113 12( 12) R-R-S-A-R-L-S-A-[KR]-P-x(0,1)-P-x(0,1)-K-[APV]-[ADE]-[APT]-K-[AP]-K-x-[AL]-[AP]-[AGP]-x-[DK] D 4: 75.6413 12( 12) R-S-A-R-L-S-A-[KR]-P-x(0,1)-P-x(0,1)-K-[APV]-[ADE]-[APT]-K-[AP]-K-x-[AL]-[AP]-[AGP]-x-[DK] E 5: 71.4712 12( 12) S-A-R-L-S-A-[KR]-P-x(0,1)-P-x(0,1)-K-[APV]-[ADE]-[APT]-K-[AP]-K-x-[AL]-[AP]-[AGP]-x-[DK] F 6: 70.4403 12( 12) P-x-R-R-S-A-R-L-S-A-[KR]-P-[APV]-[AP]-x(3)-[ADE]-x(3)-K-x-[AL]-[AP]-x-[DK]-[DK] G 7: 67.3012 12( 12) A-R-L-S-A-[KR]-P-x(0,1)-P-x(0,1)-K-[APV]-[ADE]-[APT]-K-[AP]-K-x-[AL]-[AP]-[AGP]-x-[DK] H 8: 63.1311 12( 12) R-L-S-A-[KR]-P-x(0,1)-P-x(0,1)-K-[APV]-[ADE]-[APT]-K-[AP]-K-x-[AL]-[AP]-[AGP]-x-[DK] I 9: 59.0452 12( 12) R-[PS]-[AV]-x(2)-[PS]-A-x(0,1)-K-P-x(1,3)-K-[APV]-[ADE]-[APT]-x(2)-K-x-[ALV]-x-[AGP]-K-[DK]-x(3)-[ADNV]-x-[DK] J 10: 58.9611 12( 12) L-S-A-[KR]-P-x(0,1)-P-x(0,1)-K-[APV]-[ADE]-[APT]-K-[AP]-K-x-[AL]-[AP]-[AGP]-x-[DK] K 11: 54.7910 12( 12) S-A-[KR]-P-x(0,1)-P-x(0,1)-K-[APV]-[ADE]-[APT]-K-[AP]-K-x-[AL]-[AP]-[AGP]-x-[DK] L 12: 50.6210 12( 12) A-[KR]-P-x(0,1)-P-x(0,1)-K-[APV]-[ADE]-[APT]-K-[AP]-K-x-[AL]-[AP]-[AGP]-x-[DK] M 13: 36.1448 13( 12) A-K-x(0,1)-P-x(1,3)-K-[APV]-[AE]-[AGPT]-x(2)-K-x(4)-K-x(4)-[ADGNV]-x-[DKR] N 14: 36.1448 14( 12) A-x(0,1)-K-P-x(1,3)-K-[APV]-[AE]-[AGPT]-x(2)-K-x(4)-K-x(4)-[ADGNV]-x-[DKR] O 15: 36.1448 14( 12) A-x(0,1)-K-x(0,2)-P-x-K-[APV]-[AE]-[AGPT]-x(2)-K-x(4)-K-x(4)-[ADGNV]-x-[DKR] P 16: 34.5963 12( 12) S-A-R-x(2,4)-P-x(0,1)-P-[ADP]-x(2)-[DEP]-x-K-[AP]-x(2)-[ALP] Q 17: 32.5620 12( 12) K-[APV]-[ADEQ]-[APST]-K-[GP]-K-K-x(4,5)-K-[ADGQS] R 18: 32.1109 12( 12) K-x(2)-[APST]-[EK]-[NP]-K-K-A-x(3,4)-K-x(1,3)-K S 19: 29.3996 12( 12) K-x(2)-[APST]-x-[NP]-K-K-A-x(1,2)-K-x(0,1)-K T 20: 23.5203 12( 12) K-x(5)-K-K-A-x(3,4)-K-x(1,3)-K Best patterns with alignements: fitness hits(seqs) Pattern A 1: 83.9814 12( 12) P-x-R-R-S-A-R-L-S-A-[KR]-P-x(0,1)-P-x(0,1)-K-[APV]-[ADE]-[APT]-K-[AP]-K-x-[AL]-[AP]-[AGP]-x-[DK] Occurences: 12(12) H6_ONCMY : 12- 38: tkgde PaRRSARLSARPvP-KPAAKPKkAAApK kavkg HG14_BOVIN : 16- 43: aakee PkRRSARLSAKPaPaKVETKPKkAAGkD kssdk HG14_CHICK : 16- 43: greev PkRRSARLSAKPvPdKAEPKAKaLAAkD ksenk HG14_HUMAN : 16- 42: aakee PkRRSARLSAKP-PaKVEAKPKkAAAkD kssdk HG14_MOUSE : 15- 42: aakae PkRRSARLSAKPaPaKVDAKPKkAAGkD kasdk HG15_CHICK : 15- 42: eakee PkRRSARLSAKPaPpKPEPKPKkAAPkK ekaan HG17_BOVIN : 20- 47: kvkde PqRRSARLSAKPaPpKPEPKPKkAPAkK gekvp HG17_CHICK : 20- 47: kvkde PqRRSARLSAKPaPpKPEPKPKkAAPkK sekvp HG17_HUMAN : 20- 47: kvkde PqRRSARLSAKPaPpKPEPKPKkAPAkK gekvp HG17_MOUSE : 20- 47: kvkde PqRRSARLSAKPaPpKPEPKPKkAPAkK gekvp HG17_PIG : 20- 47: kvkde PqRRSARLSAKPaPpKPEPKPKkAPAkK gekvp HG17_RAT : 20- 47: kvkde PqRRSARLSAKPaPpKPEPKPKkAPAkK gekvp B 2: 83.2721 15( 12) E-x(0,1)-P-x-R-R-S-A-R-L-S-A-[KR]-P-x(0,1)-P-x(2)-[APV]-[ADE]-x(3)-K-x-[AL]-[AP]-[AGP]-K-[DK]-x(3)-[ADGNV]-x-[DK] Occurences: 15(12) H6_ONCMY : 11- 45: atkgd E-PaRRSARLSARPvPkpAAkpkKaAAPKKavkGkK aaeng HG14_BOVIN : 14- 49: egaak EePkRRSARLSAKPaPakVEtkpKkAAGKDkssDkK vqtkg HG14_BOVIN : 15- 49: gaake E-PkRRSARLSAKPaPakVEtkpKkAAGKDkssDkK vqtkg HG14_CHICK : 14- 49: rggre EvPkRRSARLSAKPvPdkAEpkaKaLAAKDkseNkK aqskg HG14_HUMAN : 14- 48: egaak EePkRRSARLSAKP-PakVEakpKkAAAKDkssDkK vqtkg HG14_HUMAN : 15- 48: gaake E-PkRRSARLSAKP-PakVEakpKkAAAKDkssDkK vqtkg HG14_MOUSE : 14- 48: gaaka E-PkRRSARLSAKPaPakVDakpKkAAGKDkasDkK vqikg HG15_CHICK : 13- 48: egeak EePkRRSARLSAKPaPpkPEpkpKkAAPKKekaAnD kkedk HG15_CHICK : 14- 48: geake E-PkRRSARLSAKPaPpkPEpkpKkAAPKKekaAnD kkedk HG17_BOVIN : 19- 53: akvkd E-PqRRSARLSAKPaPpkPEpkpKkAPAKKgekVpK gkkgk HG17_CHICK : 19- 53: akvkd E-PqRRSARLSAKPaPpkPEpkpKkAAPKKsekVpK gkkgk HG17_HUMAN : 19- 53: akvkd E-PqRRSARLSAKPaPpkPEpkpKkAPAKKgekVpK gkkgk HG17_MOUSE : 19- 53: tkvkd E-PqRRSARLSAKPaPpkPEpkpKkAPAKKgekVpK gkkgk HG17_PIG : 19- 53: akvkd E-PqRRSARLSAKPaPpkPEpkpKkAPAKKgekVpK gkkgk HG17_RAT : 19- 53: akvkd E-PqRRSARLSAKPaPpkPEpkpKkAPAKKgekVpK gkkgk C 3: 79.8113 12( 12) R-R-S-A-R-L-S-A-[KR]-P-x(0,1)-P-x(0,1)-K-[APV]-[ADE]-[APT]-K-[AP]-K-x-[AL]-[AP]-[AGP]-x-[DK] Occurences: 12(12) H6_ONCMY : 14- 38: gdepa RRSARLSARPvP-KPAAKPKkAAApK kavkg HG14_BOVIN : 18- 43: keepk RRSARLSAKPaPaKVETKPKkAAGkD kssdk HG14_CHICK : 18- 43: eevpk RRSARLSAKPvPdKAEPKAKaLAAkD ksenk HG14_HUMAN : 18- 42: keepk RRSARLSAKP-PaKVEAKPKkAAAkD kssdk HG14_MOUSE : 17- 42: kaepk RRSARLSAKPaPaKVDAKPKkAAGkD kasdk HG15_CHICK : 17- 42: keepk RRSARLSAKPaPpKPEPKPKkAAPkK ekaan HG17_BOVIN : 22- 47: kdepq RRSARLSAKPaPpKPEPKPKkAPAkK gekvp HG17_CHICK : 22- 47: kdepq RRSARLSAKPaPpKPEPKPKkAAPkK sekvp HG17_HUMAN : 22- 47: kdepq RRSARLSAKPaPpKPEPKPKkAPAkK gekvp HG17_MOUSE : 22- 47: kdepq RRSARLSAKPaPpKPEPKPKkAPAkK gekvp HG17_PIG : 22- 47: kdepq RRSARLSAKPaPpKPEPKPKkAPAkK gekvp HG17_RAT : 22- 47: kdepq RRSARLSAKPaPpKPEPKPKkAPAkK gekvp D 4: 75.6413 12( 12) R-S-A-R-L-S-A-[KR]-P-x(0,1)-P-x(0,1)-K-[APV]-[ADE]-[APT]-K-[AP]-K-x-[AL]-[AP]-[AGP]-x-[DK] Occurences: 12(12) H6_ONCMY : 15- 38: depar RSARLSARPvP-KPAAKPKkAAApK kavkg HG14_BOVIN : 19- 43: eepkr RSARLSAKPaPaKVETKPKkAAGkD kssdk HG14_CHICK : 19- 43: evpkr RSARLSAKPvPdKAEPKAKaLAAkD ksenk HG14_HUMAN : 19- 42: eepkr RSARLSAKP-PaKVEAKPKkAAAkD kssdk HG14_MOUSE : 18- 42: aepkr RSARLSAKPaPaKVDAKPKkAAGkD kasdk HG15_CHICK : 18- 42: eepkr RSARLSAKPaPpKPEPKPKkAAPkK ekaan HG17_BOVIN : 23- 47: depqr RSARLSAKPaPpKPEPKPKkAPAkK gekvp HG17_CHICK : 23- 47: depqr RSARLSAKPaPpKPEPKPKkAAPkK sekvp HG17_HUMAN : 23- 47: depqr RSARLSAKPaPpKPEPKPKkAPAkK gekvp HG17_MOUSE : 23- 47: depqr RSARLSAKPaPpKPEPKPKkAPAkK gekvp HG17_PIG : 23- 47: depqr RSARLSAKPaPpKPEPKPKkAPAkK gekvp HG17_RAT : 23- 47: depqr RSARLSAKPaPpKPEPKPKkAPAkK gekvp E 5: 71.4712 12( 12) S-A-R-L-S-A-[KR]-P-x(0,1)-P-x(0,1)-K-[APV]-[ADE]-[APT]-K-[AP]-K-x-[AL]-[AP]-[AGP]-x-[DK] Occurences: 12(12) H6_ONCMY : 16- 38: eparr SARLSARPvP-KPAAKPKkAAApK kavkg HG14_BOVIN : 20- 43: epkrr SARLSAKPaPaKVETKPKkAAGkD kssdk HG14_CHICK : 20- 43: vpkrr SARLSAKPvPdKAEPKAKaLAAkD ksenk HG14_HUMAN : 20- 42: epkrr SARLSAKP-PaKVEAKPKkAAAkD kssdk HG14_MOUSE : 19- 42: epkrr SARLSAKPaPaKVDAKPKkAAGkD kasdk HG15_CHICK : 19- 42: epkrr SARLSAKPaPpKPEPKPKkAAPkK ekaan HG17_BOVIN : 24- 47: epqrr SARLSAKPaPpKPEPKPKkAPAkK gekvp HG17_CHICK : 24- 47: epqrr SARLSAKPaPpKPEPKPKkAAPkK sekvp HG17_HUMAN : 24- 47: epqrr SARLSAKPaPpKPEPKPKkAPAkK gekvp HG17_MOUSE : 24- 47: epqrr SARLSAKPaPpKPEPKPKkAPAkK gekvp HG17_PIG : 24- 47: epqrr SARLSAKPaPpKPEPKPKkAPAkK gekvp HG17_RAT : 24- 47: epqrr SARLSAKPaPpKPEPKPKkAPAkK gekvp F 6: 70.4403 12( 12) P-x-R-R-S-A-R-L-S-A-[KR]-P-[APV]-[AP]-x(3)-[ADE]-x(3)-K-x-[AL]-[AP]-x-[DK]-[DK] Occurences: 12(12) H6_ONCMY : 12- 39: tkgde PaRRSARLSARPVPkpaAkpkKaAApKK avkgk HG14_BOVIN : 16- 43: aakee PkRRSARLSAKPAPakvEtkpKkAAgKD kssdk HG14_CHICK : 16- 43: greev PkRRSARLSAKPVPdkaEpkaKaLAaKD ksenk HG14_HUMAN : 16- 43: aakee PkRRSARLSAKPPAkveAkpkKaAAkDK ssdkk HG14_MOUSE : 15- 42: aakae PkRRSARLSAKPAPakvDakpKkAAgKD kasdk HG15_CHICK : 15- 42: eakee PkRRSARLSAKPAPpkpEpkpKkAApKK ekaan HG17_BOVIN : 20- 47: kvkde PqRRSARLSAKPAPpkpEpkpKkAPaKK gekvp HG17_CHICK : 20- 47: kvkde PqRRSARLSAKPAPpkpEpkpKkAApKK sekvp HG17_HUMAN : 20- 47: kvkde PqRRSARLSAKPAPpkpEpkpKkAPaKK gekvp HG17_MOUSE : 20- 47: kvkde PqRRSARLSAKPAPpkpEpkpKkAPaKK gekvp HG17_PIG : 20- 47: kvkde PqRRSARLSAKPAPpkpEpkpKkAPaKK gekvp HG17_RAT : 20- 47: kvkde PqRRSARLSAKPAPpkpEpkpKkAPaKK gekvp G 7: 67.3012 12( 12) A-R-L-S-A-[KR]-P-x(0,1)-P-x(0,1)-K-[APV]-[ADE]-[APT]-K-[AP]-K-x-[AL]-[AP]-[AGP]-x-[DK] Occurences: 12(12) H6_ONCMY : 17- 38: parrs ARLSARPvP-KPAAKPKkAAApK kavkg HG14_BOVIN : 21- 43: pkrrs ARLSAKPaPaKVETKPKkAAGkD kssdk HG14_CHICK : 21- 43: pkrrs ARLSAKPvPdKAEPKAKaLAAkD ksenk HG14_HUMAN : 21- 42: pkrrs ARLSAKP-PaKVEAKPKkAAAkD kssdk HG14_MOUSE : 20- 42: pkrrs ARLSAKPaPaKVDAKPKkAAGkD kasdk HG15_CHICK : 20- 42: pkrrs ARLSAKPaPpKPEPKPKkAAPkK ekaan HG17_BOVIN : 25- 47: pqrrs ARLSAKPaPpKPEPKPKkAPAkK gekvp HG17_CHICK : 25- 47: pqrrs ARLSAKPaPpKPEPKPKkAAPkK sekvp HG17_HUMAN : 25- 47: pqrrs ARLSAKPaPpKPEPKPKkAPAkK gekvp HG17_MOUSE : 25- 47: pqrrs ARLSAKPaPpKPEPKPKkAPAkK gekvp HG17_PIG : 25- 47: pqrrs ARLSAKPaPpKPEPKPKkAPAkK gekvp HG17_RAT : 25- 47: pqrrs ARLSAKPaPpKPEPKPKkAPAkK gekvp H 8: 63.1311 12( 12) R-L-S-A-[KR]-P-x(0,1)-P-x(0,1)-K-[APV]-[ADE]-[APT]-K-[AP]-K-x-[AL]-[AP]-[AGP]-x-[DK] Occurences: 12(12) H6_ONCMY : 18- 38: arrsa RLSARPvP-KPAAKPKkAAApK kavkg HG14_BOVIN : 22- 43: krrsa RLSAKPaPaKVETKPKkAAGkD kssdk HG14_CHICK : 22- 43: krrsa RLSAKPvPdKAEPKAKaLAAkD ksenk HG14_HUMAN : 22- 42: krrsa RLSAKP-PaKVEAKPKkAAAkD kssdk HG14_MOUSE : 21- 42: krrsa RLSAKPaPaKVDAKPKkAAGkD kasdk HG15_CHICK : 21- 42: krrsa RLSAKPaPpKPEPKPKkAAPkK ekaan HG17_BOVIN : 26- 47: qrrsa RLSAKPaPpKPEPKPKkAPAkK gekvp HG17_CHICK : 26- 47: qrrsa RLSAKPaPpKPEPKPKkAAPkK sekvp HG17_HUMAN : 26- 47: qrrsa RLSAKPaPpKPEPKPKkAPAkK gekvp HG17_MOUSE : 26- 47: qrrsa RLSAKPaPpKPEPKPKkAPAkK gekvp HG17_PIG : 26- 47: qrrsa RLSAKPaPpKPEPKPKkAPAkK gekvp HG17_RAT : 26- 47: qrrsa RLSAKPaPpKPEPKPKkAPAkK gekvp I 9: 59.0452 12( 12) R-[PS]-[AV]-x(2)-[PS]-A-x(0,1)-K-P-x(1,3)-K-[APV]-[ADE]-[APT]-x(2)-K-x-[ALV]-x-[AGP]-K-[DK]-x(3)-[ADNV]-x-[DK] Occurences: 12(12) H6_ONCMY : 22- 51: arlsa RPVpkPAaKPk--KAAApkKaVkGKKaaeNgD akaea HG14_BOVIN : 19- 49: eepkr RSArlSA-KPapaKVETkpKkAaGKDkssDkK vqtkg HG14_CHICK : 19- 49: evpkr RSArlSA-KPvpdKAEPkaKaLaAKDkseNkK aqskg HG14_HUMAN : 19- 48: eepkr RSArlSA-KPpa-KVEAkpKkAaAKDkssDkK vqtkg HG14_MOUSE : 18- 48: aepkr RSArlSA-KPapaKVDAkpKkAaGKDkasDkK vqikg HG15_CHICK : 18- 48: eepkr RSArlSA-KPappKPEPkpKkAaPKKekaAnD kkedk HG17_BOVIN : 23- 53: depqr RSArlSA-KPappKPEPkpKkApAKKgekVpK gkkgk HG17_CHICK : 23- 53: depqr RSArlSA-KPappKPEPkpKkAaPKKsekVpK gkkgk HG17_HUMAN : 23- 53: depqr RSArlSA-KPappKPEPkpKkApAKKgekVpK gkkgk HG17_MOUSE : 23- 53: depqr RSArlSA-KPappKPEPkpKkApAKKgekVpK gkkgk HG17_PIG : 23- 53: depqr RSArlSA-KPappKPEPkpKkApAKKgekVpK gkkgk HG17_RAT : 23- 53: depqr RSArlSA-KPappKPEPkpKkApAKKgekVpK gkkgk J 10: 58.9611 12( 12) L-S-A-[KR]-P-x(0,1)-P-x(0,1)-K-[APV]-[ADE]-[APT]-K-[AP]-K-x-[AL]-[AP]-[AGP]-x-[DK] Occurences: 12(12) H6_ONCMY : 19- 38: rrsar LSARPvP-KPAAKPKkAAApK kavkg HG14_BOVIN : 23- 43: rrsar LSAKPaPaKVETKPKkAAGkD kssdk HG14_CHICK : 23- 43: rrsar LSAKPvPdKAEPKAKaLAAkD ksenk HG14_HUMAN : 23- 42: rrsar LSAKP-PaKVEAKPKkAAAkD kssdk HG14_MOUSE : 22- 42: rrsar LSAKPaPaKVDAKPKkAAGkD kasdk HG15_CHICK : 22- 42: rrsar LSAKPaPpKPEPKPKkAAPkK ekaan HG17_BOVIN : 27- 47: rrsar LSAKPaPpKPEPKPKkAPAkK gekvp HG17_CHICK : 27- 47: rrsar LSAKPaPpKPEPKPKkAAPkK sekvp HG17_HUMAN : 27- 47: rrsar LSAKPaPpKPEPKPKkAPAkK gekvp HG17_MOUSE : 27- 47: rrsar LSAKPaPpKPEPKPKkAPAkK gekvp HG17_PIG : 27- 47: rrsar LSAKPaPpKPEPKPKkAPAkK gekvp HG17_RAT : 27- 47: rrsar LSAKPaPpKPEPKPKkAPAkK gekvp K 11: 54.7910 12( 12) S-A-[KR]-P-x(0,1)-P-x(0,1)-K-[APV]-[ADE]-[APT]-K-[AP]-K-x-[AL]-[AP]-[AGP]-x-[DK] Occurences: 12(12) H6_ONCMY : 20- 38: rsarl SARPvP-KPAAKPKkAAApK kavkg HG14_BOVIN : 24- 43: rsarl SAKPaPaKVETKPKkAAGkD kssdk HG14_CHICK : 24- 43: rsarl SAKPvPdKAEPKAKaLAAkD ksenk HG14_HUMAN : 24- 42: rsarl SAKP-PaKVEAKPKkAAAkD kssdk HG14_MOUSE : 23- 42: rsarl SAKPaPaKVDAKPKkAAGkD kasdk HG15_CHICK : 23- 42: rsarl SAKPaPpKPEPKPKkAAPkK ekaan HG17_BOVIN : 28- 47: rsarl SAKPaPpKPEPKPKkAPAkK gekvp HG17_CHICK : 28- 47: rsarl SAKPaPpKPEPKPKkAAPkK sekvp HG17_HUMAN : 28- 47: rsarl SAKPaPpKPEPKPKkAPAkK gekvp HG17_MOUSE : 28- 47: rsarl SAKPaPpKPEPKPKkAPAkK gekvp HG17_PIG : 28- 47: rsarl SAKPaPpKPEPKPKkAPAkK gekvp HG17_RAT : 28- 47: rsarl SAKPaPpKPEPKPKkAPAkK gekvp L 12: 50.6210 12( 12) A-[KR]-P-x(0,1)-P-x(0,1)-K-[APV]-[ADE]-[APT]-K-[AP]-K-x-[AL]-[AP]-[AGP]-x-[DK] Occurences: 12(12) H6_ONCMY : 21- 38: sarls ARPvP-KPAAKPKkAAApK kavkg HG14_BOVIN : 25- 43: sarls AKPaPaKVETKPKkAAGkD kssdk HG14_CHICK : 25- 43: sarls AKPvPdKAEPKAKaLAAkD ksenk HG14_HUMAN : 25- 42: sarls AKP-PaKVEAKPKkAAAkD kssdk HG14_MOUSE : 24- 42: sarls AKPaPaKVDAKPKkAAGkD kasdk HG15_CHICK : 24- 42: sarls AKPaPpKPEPKPKkAAPkK ekaan HG17_BOVIN : 29- 47: sarls AKPaPpKPEPKPKkAPAkK gekvp HG17_CHICK : 29- 47: sarls AKPaPpKPEPKPKkAAPkK sekvp HG17_HUMAN : 29- 47: sarls AKPaPpKPEPKPKkAPAkK gekvp HG17_MOUSE : 29- 47: sarls AKPaPpKPEPKPKkAPAkK gekvp HG17_PIG : 29- 47: sarls AKPaPpKPEPKPKkAPAkK gekvp HG17_RAT : 29- 47: sarls AKPaPpKPEPKPKkAPAkK gekvp M 13: 36.1448 13( 12) A-K-x(0,1)-P-x(1,3)-K-[APV]-[AE]-[AGPT]-x(2)-K-x(4)-K-x(4)-[ADGNV]-x-[DKR] Occurences: 13(12) H6_ONCMY : 29- 51: vpkpa AK-Pk--KAAApkKavkgKkaaeNgD akaea HG14_BOVIN : 25- 49: sarls AK-PapaKVETkpKkaagKdkssDkK vqtkg HG14_CHICK : 25- 49: sarls AK-PvpdKAEPkaKalaaKdkseNkK aqskg HG14_HUMAN : 25- 48: sarls AKpPa--KVEAkpKkaaaKdkssDkK vqtkg HG14_HUMAN : 25- 48: sarls AK-Ppa-KVEAkpKkaaaKdkssDkK vqtkg HG14_HUMAN : 33- 55: pakve AK-Pk--KAAAkdKssdkKvqtkGkR gakgk HG14_MOUSE : 33- 55: pakvd AK-Pk--KAAGkdKasdkKvqikGkR gakgk HG15_CHICK : 24- 48: sarls AK-PappKPEPkpKkaapKkekaAnD kkedk HG17_BOVIN : 29- 53: sarls AK-PappKPEPkpKkapaKkgekVpK gkkgk HG17_CHICK : 29- 53: sarls AK-PappKPEPkpKkaapKksekVpK gkkgk HG17_HUMAN : 29- 53: sarls AK-PappKPEPkpKkapaKkgekVpK gkkgk HG17_MOUSE : 29- 53: sarls AK-PappKPEPkpKkapaKkgekVpK gkkgk HG17_PIG : 29- 53: sarls AK-PappKPEPkpKkapaKkgekVpK gkkgk HG17_RAT : 29- 53: sarls AK-PappKPEPkpKkapaKkgekVpK gkkgk N 14: 36.1448 14( 12) A-x(0,1)-K-P-x(1,3)-K-[APV]-[AE]-[AGPT]-x(2)-K-x(4)-K-x(4)-[ADGNV]-x-[DKR] Occurences: 14(12) H6_ONCMY : 28- 51: pvpkp AaKPk--KAAApkKavkgKkaaeNgD akaea H6_ONCMY : 29- 51: vpkpa A-KPk--KAAApkKavkgKkaaeNgD akaea HG14_BOVIN : 25- 49: sarls A-KPapaKVETkpKkaagKdkssDkK vqtkg HG14_CHICK : 25- 49: sarls A-KPvpdKAEPkaKalaaKdkseNkK aqskg HG14_HUMAN : 25- 48: sarls A-KPpa-KVEAkpKkaaaKdkssDkK vqtkg HG14_HUMAN : 33- 55: pakve A-KPk--KAAAkdKssdkKvqtkGkR gakgk HG14_MOUSE : 33- 55: pakvd A-KPk--KAAGkdKasdkKvqikGkR gakgk HG15_CHICK : 24- 48: sarls A-KPappKPEPkpKkaapKkekaAnD kkedk HG17_BOVIN : 29- 53: sarls A-KPappKPEPkpKkapaKkgekVpK gkkgk HG17_CHICK : 29- 53: sarls A-KPappKPEPkpKkaapKksekVpK gkkgk HG17_HUMAN : 29- 53: sarls A-KPappKPEPkpKkapaKkgekVpK gkkgk HG17_MOUSE : 29- 53: sarls A-KPappKPEPkpKkapaKkgekVpK gkkgk HG17_PIG : 29- 53: sarls A-KPappKPEPkpKkapaKkgekVpK gkkgk HG17_RAT : 29- 53: sarls A-KPappKPEPkpKkapaKkgekVpK gkkgk O 15: 36.1448 14( 12) A-x(0,1)-K-x(0,2)-P-x-K-[APV]-[AE]-[AGPT]-x(2)-K-x(4)-K-x(4)-[ADGNV]-x-[DKR] Occurences: 14(12) H6_ONCMY : 28- 51: pvpkp AaK--PkKAAApkKavkgKkaaeNgD akaea H6_ONCMY : 29- 51: vpkpa A-K--PkKAAApkKavkgKkaaeNgD akaea HG14_BOVIN : 25- 49: sarls A-KpaPaKVETkpKkaagKdkssDkK vqtkg HG14_CHICK : 25- 49: sarls A-KpvPdKAEPkaKalaaKdkseNkK aqskg HG14_HUMAN : 25- 48: sarls A-Kp-PaKVEAkpKkaaaKdkssDkK vqtkg HG14_HUMAN : 33- 55: pakve A-K--PkKAAAkdKssdkKvqtkGkR gakgk HG14_MOUSE : 33- 55: pakvd A-K--PkKAAGkdKasdkKvqikGkR gakgk HG15_CHICK : 24- 48: sarls A-KpaPpKPEPkpKkaapKkekaAnD kkedk HG17_BOVIN : 29- 53: sarls A-KpaPpKPEPkpKkapaKkgekVpK gkkgk HG17_CHICK : 29- 53: sarls A-KpaPpKPEPkpKkaapKksekVpK gkkgk HG17_HUMAN : 29- 53: sarls A-KpaPpKPEPkpKkapaKkgekVpK gkkgk HG17_MOUSE : 29- 53: sarls A-KpaPpKPEPkpKkapaKkgekVpK gkkgk HG17_PIG : 29- 53: sarls A-KpaPpKPEPkpKkapaKkgekVpK gkkgk HG17_RAT : 29- 53: sarls A-KpaPpKPEPkpKkapaKkgekVpK gkkgk P 16: 34.5963 12( 12) S-A-R-x(2,4)-P-x(0,1)-P-[ADP]-x(2)-[DEP]-x-K-[AP]-x(2)-[ALP] Occurences: 12(12) H6_ONCMY : 20- 37: rsarl SARpv--PkPAakPkKAaaP kkavk HG14_BOVIN : 20- 39: epkrr SARlsakPaPAkvEtKPkkA agkdk HG14_CHICK : 20- 39: vpkrr SARlsakPvPDkaEpKAkaL aakdk HG14_HUMAN : 20- 38: epkrr SARlsakP-PAkvEaKPkkA aakdk HG14_MOUSE : 19- 38: epkrr SARlsakPaPAkvDaKPkkA agkdk HG15_CHICK : 19- 38: epkrr SARlsakPaPPkpEpKPkkA apkke HG17_BOVIN : 24- 43: epqrr SARlsakPaPPkpEpKPkkA pakkg HG17_CHICK : 24- 43: epqrr SARlsakPaPPkpEpKPkkA apkks HG17_HUMAN : 24- 43: epqrr SARlsakPaPPkpEpKPkkA pakkg HG17_MOUSE : 24- 43: epqrr SARlsakPaPPkpEpKPkkA pakkg HG17_PIG : 24- 43: epqrr SARlsakPaPPkpEpKPkkA pakkg HG17_RAT : 24- 43: epqrr SARlsakPaPPkpEpKPkkA pakkg Q 17: 32.5620 12( 12) K-[APV]-[ADEQ]-[APST]-K-[GP]-K-K-x(4,5)-K-[ADGQS] Occurences: 12(12) H6_ONCMY : 26- 40: arpvp KPAAKPKKaaapkKA vkgkk HG14_BOVIN : 31- 45: kpapa KVETKPKKaagkdKS sdkkv HG14_CHICK : 49- 62: ksenk KAQSKGKKgpkg-KQ teetn HG14_HUMAN : 30- 44: akppa KVEAKPKKaaakdKS sdkkv HG14_MOUSE : 30- 44: kpapa KVDAKPKKaagkdKA sdkkv HG15_CHICK : 54- 67: kkedk KAATKGKKgakg-KD etkqe HG17_BOVIN : 35- 48: kpapp KPEPKPKKapak-KG ekvpk HG17_CHICK : 35- 48: kpapp KPEPKPKKaapk-KS ekvpk HG17_HUMAN : 35- 48: kpapp KPEPKPKKapak-KG ekvpk HG17_MOUSE : 35- 48: kpapp KPEPKPKKapak-KG ekvpk HG17_PIG : 35- 48: kpapp KPEPKPKKapak-KG ekvpk HG17_RAT : 35- 48: kpapp KPEPKPKKapak-KG ekvpk R 18: 32.1109 12( 12) K-x(2)-[APST]-[EK]-[NP]-K-K-A-x(3,4)-K-x(1,3)-K Occurences: 12(12) H6_ONCMY : 26- 42: arpvp KpaAKPKKAaapkKav-K gkkaa H6_ONCMY : 26- 42: arpvp KpaAKPKKAaap-KkavK gkkaa HG14_BOVIN : 31- 48: kpapa KveTKPKKAagkdKssdK kvqtk HG14_CHICK : 42- 59: kalaa KdkSENKKAqskgKkgpK gkqte HG14_HUMAN : 30- 47: akppa KveAKPKKAaakdKssdK kvqtk HG14_MOUSE : 30- 47: kpapa KvdAKPKKAagkdKasdK kvqik HG15_CHICK : 30- 44: kpapp KpePKPKKAapk-Ke--K aandk HG17_BOVIN : 35- 50: kpapp KpePKPKKApak-Kge-K vpkgk HG17_CHICK : 35- 50: kpapp KpePKPKKAapk-Kse-K vpkgk HG17_HUMAN : 35- 50: kpapp KpePKPKKApak-Kge-K vpkgk HG17_MOUSE : 35- 50: kpapp KpePKPKKApak-Kge-K vpkgk HG17_PIG : 35- 50: kpapp KpePKPKKApak-Kge-K vpkgk HG17_RAT : 35- 50: kpapp KpePKPKKApak-Kge-K vpkgk S 19: 29.3996 12( 12) K-x(2)-[APST]-x-[NP]-K-K-A-x(1,2)-K-x(0,1)-K Occurences: 12(12) H6_ONCMY : 32- 44: paakp KkaAaPKKAv-KgK kaaen HG14_BOVIN : 31- 44: kpapa KveTkPKKAagKdK ssdkk HG14_CHICK : 42- 55: kalaa KdkSeNKKAqsKgK kgpkg HG14_HUMAN : 30- 43: akppa KveAkPKKAaaKdK ssdkk HG14_MOUSE : 30- 43: kpapa KvdAkPKKAagKdK asdkk HG15_CHICK : 30- 42: kpapp KpePkPKKAapK-K ekaan HG17_BOVIN : 35- 47: kpapp KpePkPKKApaK-K gekvp HG17_CHICK : 35- 47: kpapp KpePkPKKAapK-K sekvp HG17_HUMAN : 35- 47: kpapp KpePkPKKApaK-K gekvp HG17_MOUSE : 35- 47: kpapp KpePkPKKApaK-K gekvp HG17_PIG : 35- 47: kpapp KpePkPKKApaK-K gekvp HG17_RAT : 35- 47: kpapp KpePkPKKApaK-K gekvp T 20: 23.5203 12( 12) K-x(5)-K-K-A-x(3,4)-K-x(1,3)-K Occurences: 12(12) H6_ONCMY : 26- 42: arpvp KpaakpKKAaapkKav-K gkkaa H6_ONCMY : 26- 42: arpvp KpaakpKKAaap-KkavK gkkaa HG14_BOVIN : 31- 48: kpapa KvetkpKKAagkdKssdK kvqtk HG14_CHICK : 42- 59: kalaa KdksenKKAqskgKkgpK gkqte HG14_HUMAN : 30- 47: akppa KveakpKKAaakdKssdK kvqtk HG14_MOUSE : 30- 47: kpapa KvdakpKKAagkdKasdK kvqik HG15_CHICK : 30- 44: kpapp KpepkpKKAapk-Ke--K aandk HG17_BOVIN : 35- 50: kpapp KpepkpKKApak-Kge-K vpkgk HG17_CHICK : 35- 50: kpapp KpepkpKKAapk-Kse-K vpkgk HG17_HUMAN : 35- 50: kpapp KpepkpKKApak-Kge-K vpkgk HG17_MOUSE : 35- 50: kpapp KpepkpKKApak-Kge-K vpkgk HG17_PIG : 35- 50: kpapp KpepkpKKApak-Kge-K vpkgk HG17_RAT : 35- 50: kpapp KpepkpKKApak-Kge-K vpkgk Number of patterns evaluated by Pratt:1995 Total running time: 1 seconds