------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 12 sequences from file HLYD_FAMILY PATTERN CONSERVATION: CM: min Nr of Seqs to Match 12 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename HLYD_FAMILY.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: APRE_PSEAE 432 CVAA_ECOLI 413 CYAD_BORPE 440 EMRA_ECOLI 390 HLY4_ECOLI 478 HLYD_ACTPL 477 HLYD_ECOLI 478 LCND_LACLA 474 LKTD_ACTAC 477 LKTD_PASHA 478 PRTE_ERWCH 448 RTXD_ACTPL 477 Pratt run started at Thu Feb 6 19:54:34 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 14.6802 18( 12) G-x-V-x(0,2)-T-x(1,3)-A 2: 12.0102 34( 12) E-x(3)-L-x(3,4)-L 3: 12.0102 18( 12) L-E-x(3,4)-L 4: 12.0102 15( 12) L-x(0,1)-E-x(3)-L 5: 12.0102 14( 12) Q-x(1,2)-Q-x(2)-L 6: 12.0102 15( 12) Q-x(4)-Q-x(1,2)-L 7: 12.0102 16( 12) G-x(1,2)-V-x(2)-T 8: 12.0102 27( 12) I-x(5)-G-x(1,2)-V 9: 12.0102 22( 12) G-x(1,2)-V-T 10: 12.0102 18( 12) V-x(2)-G-x(1,2)-V 11: 12.0102 18( 12) V-x-G-x(0,1)-V 12: 12.0102 23( 12) V-x(0,1)-G-x-V 13: 12.0102 23( 12) L-x-L-x(2,3)-L 14: 12.0102 23( 12) L-x(2,3)-L-x-L 15: 12.0102 15( 12) L-x(2)-L-x(3,4)-L 16: 11.5102 18( 12) L-x(0,1)-P-x(2,3)-L 17: 11.5102 24( 12) E-x(0,1)-S-x(0,1)-L 18: 11.5102 26( 12) A-x(0,1)-E-x(2,3)-L 19: 11.5102 21( 12) T-x(1,2)-E-x(1,2)-L 20: 11.5102 19( 12) S-x(3,4)-E-x(2,3)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 16.9351 17( 12) L-x(2,3)-L-x-L-x(3)-[GILP]-[GIV] B 2: 16.5351 12( 12) L-E-x(3,4)-L-x(2)-[GNQST]-x-[DSV] C 3: 14.6802 18( 12) G-x-V-x(0,2)-T-x(1,3)-A D 4: 13.6202 20( 12) E-x(3)-L-x(3,4)-L-x(4)-[DEPQST] E 5: 12.0102 15( 12) L-x(0,1)-E-x(3)-L F 6: 12.0102 14( 12) Q-x(1,2)-Q-x(2)-L G 7: 12.0102 15( 12) Q-x(4)-Q-x(1,2)-L H 8: 12.0102 16( 12) G-x(1,2)-V-x(2)-T I 9: 12.0102 27( 12) I-x(5)-G-x(1,2)-V J 10: 12.0102 22( 12) G-x(1,2)-V-T K 11: 12.0102 18( 12) V-x(2)-G-x(1,2)-V L 12: 12.0102 18( 12) V-x-G-x(0,1)-V M 13: 12.0102 23( 12) V-x(0,1)-G-x-V N 14: 12.0102 23( 12) L-x-L-x(2,3)-L O 15: 12.0102 15( 12) L-x(2)-L-x(3,4)-L P 16: 11.5102 18( 12) L-x(0,1)-P-x(2,3)-L Q 17: 11.5102 24( 12) E-x(0,1)-S-x(0,1)-L R 18: 11.5102 26( 12) A-x(0,1)-E-x(2,3)-L S 19: 11.5102 21( 12) T-x(1,2)-E-x(1,2)-L T 20: 11.5102 19( 12) S-x(3,4)-E-x(2,3)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 16.9351 17( 12) L-x(2,3)-L-x-L-x(3)-[GILP]-[GIV] Occurences: 17(12) APRE_PSEAE : 15- 26: nayar LgwlLvLfgfGG allwa CVAA_ECOLI : 229- 239: iyqme Lqr-LeLqkeLV ntdve CYAD_BORPE : 39- 50: vetef LpsaLsLqerPI sptar EMRA_ECOLI : 23- 34: gkrkr LlllLtLlfiII avaig EMRA_ECOLI : 24- 34: krkrl Lll-LtLlfiII avaig HLY4_ECOLI : 42- 53: denef LpahLeLietPV srrpr HLYD_ACTPL : 42- 53: denef LpahLeLietPV skkpr HLYD_ACTPL : 63- 73: rliay Lim-LfLflaLV isivs HLYD_ACTPL : 66- 77: aylim LflfLaLvisIV shvei HLYD_ECOLI : 42- 53: denef LpahLeLietPV srrpr LCND_LACLA : 23- 33: rnfst Lii-LpLfilLV ggvif LKTD_ACTAC : 42- 53: denef LpahLeLietPV snapr LKTD_PASHA : 42- 53: desef LpahLdLietPV skkpr LKTD_PASHA : 63- 73: rliay Lim-LfLvvaIV lasvs PRTE_ERWCH : 31- 42: eralr LgwwLvLagfGG fllwa RTXD_ACTPL : 42- 53: denef LprhLeLietPI skkpr RTXD_ACTPL : 63- 73: rliay Lim-LfLflaIV isiis B 2: 16.5351 12( 12) L-E-x(3,4)-L-x(2)-[GNQST]-x-[DSV] Occurences: 12(12) APRE_PSEAE : 320- 331: pnsds LEvegqLavNlV drihs CVAA_ECOLI : 232- 243: melqr LElqkeLvnTdV egeii CYAD_BORPE : 363- 373: tkygt LEgkv-LyvSpD tvvdd EMRA_ECOLI : 330- 340: ldqkq LEqyp-LriGlS tlvsv HLY4_ECOLI : 366- 376: peddt LEvta-LvqNkD igfin HLYD_ACTPL : 364- 374: peddv LEvta-LiqNkD igfie HLYD_ECOLI : 366- 376: peddt LEvta-LvqNkD igfin LCND_LACLA : 318- 329: stltd LEtkisLqkQdD qysqv LKTD_ACTAC : 365- 375: peeds LEvta-LiqNkD igfvk LKTD_PASHA : 365- 375: peddv LEata-LvpNkD igfva PRTE_ERWCH : 225- 235: prnkm LEter-LfaQvS gelaq RTXD_ACTPL : 365- 375: peddv LEvsa-LiqNkD vgfve C 3: 14.6802 18( 12) G-x-V-x(0,2)-T-x(1,3)-A Occurences: 18(12) APRE_PSEAE : 357- 364: tprvt GeV--TmvsA drlld CVAA_ECOLI : 46- 54: rvnvs GeVt-TwprA vniys CYAD_BORPE : 207- 213: yrrdv GlV--Tqi-A hahrg EMRA_ECOLI : 70- 77: msqvs GsV--TkvwA dntdf HLY4_ECOLI : 347- 353: kvhte GgVv-Tt--A etlmv HLY4_ECOLI : 348- 353: vhteg GvV--Tt--A etlmv HLYD_ACTPL : 345- 351: kthtv GgVv-Tt--A etlmv HLYD_ACTPL : 346- 351: thtvg GvV--Tt--A etlmv HLYD_ECOLI : 347- 353: kvhte GgVv-Tt--A etlmv HLYD_ECOLI : 348- 353: vhteg GvV--Tt--A etlmv LCND_LACLA : 34- 42: fillv GgVifTff-A hkelt LKTD_ACTAC : 347- 352: vhtid GvV--Tt--A etlmv LKTD_PASHA : 346- 352: kihti GgVv-Tt--A etlmi LKTD_PASHA : 347- 352: ihtig GvV--Tt--A etlmi PRTE_ERWCH : 93- 101: drvaa GqVllTln-A vdart PRTE_ERWCH : 373- 380: tprvp GtV--TllsA drlvd RTXD_ACTPL : 346- 352: kthtk GgVv-Tt--A etlmv RTXD_ACTPL : 347- 352: thtkg GvV--Tt--A etlmv D 4: 13.6202 20( 12) E-x(3)-L-x(3,4)-L-x(4)-[DEPQST] Occurences: 20(12) APRE_PSEAE : 136- 149: lptlg ErleLqrq-LlhsrQ talan APRE_PSEAE : 136- 150: lptlg ErleLqrqlLhsrqT alane CVAA_ECOLI : 200- 214: lsgqn EqnaLqittLesqiQ tqaad CYAD_BORPE : 264- 277: rrqaf EtlvLark-LaaqaE qeiar EMRA_ECOLI : 331- 344: dqkql EqypLrig-LstlvS vnttn HLY4_ECOLI : 38- 51: vrekd EnefLpah-LelieT pvsrr HLY4_ECOLI : 362- 376: mvivp EddtLevtaLvqnkD igfin HLYD_ACTPL : 38- 51: drekd EnefLpah-LelieT pvskk HLYD_ACTPL : 360- 374: mviap EddvLevtaLiqnkD igfie HLYD_ECOLI : 38- 51: vrekd EnefLpah-LelieT pvsrr HLYD_ECOLI : 362- 376: mvivp EddtLevtaLvqnkD igfin LCND_LACLA : 96- 109: yngtp EqtqLsel-LtqkkQ aldkk LCND_LACLA : 307- 320: sasnk EmtdLnst-LtdleT kislq LKTD_ACTAC : 38- 51: vrekd EnefLpah-LelieT pvsna LKTD_ACTAC : 361- 375: mvvvp EedsLevtaLiqnkD igfvk LKTD_PASHA : 38- 51: nrkkd EsefLpah-LdlieT pvskk LKTD_PASHA : 119- 132: dgqfv EkgqLlvs-LtalgS dadik LKTD_PASHA : 361- 375: miivp EddvLeataLvpnkD igfva PRTE_ERWCH : 199- 212: sskqs EqatLsqq-LqglrP laadn RTXD_ACTPL : 38- 51: arqkd EnefLprh-LelieT piskk RTXD_ACTPL : 361- 375: mviap EddvLevsaLiqnkD vgfve E 5: 12.0102 15( 12) L-x(0,1)-E-x(3)-L Occurences: 15(12) APRE_PSEAE : 125- 131: empag LaEqapL ptlge APRE_PSEAE : 134- 140: aplpt LgErleL qrqll CVAA_ECOLI : 129- 134: itldt L-EkqrL qytda CYAD_BORPE : 363- 368: tkygt L-EgkvL yvspd EMRA_ECOLI : 330- 335: ldqkq L-EqypL rigls HLY4_ECOLI : 366- 371: peddt L-EvtaL vqnkd HLYD_ACTPL : 364- 369: peddv L-EvtaL iqnkd HLYD_ECOLI : 366- 371: peddt L-EvtaL vqnkd LCND_LACLA : 6- 12: mfdkk LlEsseL ydkry LCND_LACLA : 7- 12: fdkkl L-EsseL ydkry LKTD_ACTAC : 365- 370: peeds L-EvtaL iqnkd LKTD_PASHA : 277- 282: sklne L-EndlL nvkee LKTD_PASHA : 365- 370: peddv L-EataL vpnkd PRTE_ERWCH : 225- 230: prnkm L-EterL faqvs RTXD_ACTPL : 365- 370: peddv L-EvsaL iqnkd F 6: 12.0102 14( 12) Q-x(1,2)-Q-x(2)-L Occurences: 14(12) APRE_PSEAE : 180- 186: qtegn QrlQqrL lnsql CVAA_ECOLI : 187- 192: valyy Qq-QnnL lslsg CVAA_ECOLI : 198- 204: lslsg QneQnaL qittl CYAD_BORPE : 329- 334: sgagi Qv-QaqL dskdi EMRA_ECOLI : 329- 335: eldqk QleQypL rigls HLY4_ECOLI : 201- 207: stwqn QkyQkeL nldkk HLYD_ACTPL : 200- 206: eawqk QkyQkeL alqrr HLYD_ECOLI : 201- 207: stwqn QkyQkeL nldkk LCND_LACLA : 219- 225: qynsy QaqQatL eadlk LKTD_ACTAC : 200- 206: stwqk QrhQktL nlnkk LKTD_PASHA : 200- 206: ttwqk QktQktL aykrk PRTE_ERWCH : 129- 135: rllae QrnQssL aatpr PRTE_ERWCH : 197- 203: vmssk QseQatL sqqlq RTXD_ACTPL : 200- 206: etwqk QkyQkeL ayqrk G 7: 12.0102 15( 12) Q-x(4)-Q-x(1,2)-L Occurences: 15(12) APRE_PSEAE : 51- 59: viisg QrksvQhpL ggvvk APRE_PSEAE : 175- 182: leglr QtegnQr-L qqrll CVAA_ECOLI : 230- 238: yqmel QrlelQkeL vntdv CYAD_BORPE : 184- 192: sylds QyadyQaqL rsiea EMRA_ECOLI : 327- 335: rield QkqleQypL rigls HLY4_ECOLI : 140- 148: dtlkt QssllQarL eqiry HLY4_ECOLI : 199- 207: qfstw QnqkyQkeL nldkk HLYD_ACTPL : 198- 206: qfeaw QkqkyQkeL alqrr HLYD_ECOLI : 140- 148: dtlkt QssllQarL eqtry HLYD_ECOLI : 199- 207: qfstw QnqkyQkeL nldkk LCND_LACLA : 116- 124: ldkkv QldllQrsL tnekn LKTD_ACTAC : 198- 206: qfstw QkqrhQktL nlnkk LKTD_PASHA : 198- 206: qyttw QkqktQktL aykrk PRTE_ERWCH : 200- 207: skqse QatlsQq-L qglrp RTXD_ACTPL : 198- 206: qfetw QkqkyQkeL ayqrk H 8: 12.0102 16( 12) G-x(1,2)-V-x(2)-T Occurences: 16(12) APRE_PSEAE : 39- 45: apldq GvaVpaT viisg CVAA_ECOLI : 21- 27: wliml GsiVfiT aflmf CYAD_BORPE : 309- 315: valte GtaVaaT qplmm EMRA_ECOLI : 86- 91: dfvke Gd-VlvT ldptd EMRA_ECOLI : 269- 275: anmri GqpVtiT tdiyg EMRA_ECOLI : 280- 286: ttdiy GddVkyT gkvvg HLY4_ECOLI : 347- 352: kvhte Gg-VvtT aetlm HLYD_ACTPL : 345- 350: kthtv Gg-VvtT aetlm HLYD_ECOLI : 347- 352: kvhte Gg-VvtT aetlm LCND_LACLA : 34- 39: fillv Gg-VifT ffahk LCND_LACLA : 390- 396: sgmkv GqkVrfT vqqnl LKTD_ACTAC : 418- 423: ehpkl Gl-VfnT iield LKTD_PASHA : 346- 351: kihti Gg-VvtT aetlm PRTE_ERWCH : 93- 98: drvaa Gq-VllT lnavd PRTE_ERWCH : 243- 248: laqts Ge-VgrT rrdiq RTXD_ACTPL : 346- 351: kthtk Gg-VvtT aetlm I 9: 12.0102 27( 12) I-x(5)-G-x(1,2)-V Occurences: 27(12) APRE_PSEAE : 284- 292: lrhae IrapvsGy-V aglkv CVAA_ECOLI : 57- 65: pravn IysgvqGf-V vrqfv CVAA_ECOLI : 57- 66: pravn IysgvqGfvV rqfvh CVAA_ECOLI : 249- 257: egeii IralsdGk-V dslsv CYAD_BORPE : 79- 87: vgkte IvvhaaGk-V vpvgq CYAD_BORPE : 79- 88: vgkte IvvhaaGkvV pvgqs CYAD_BORPE : 96- 104: gqski IaasetGr-V arvlv EMRA_ECOLI : 64- 72: gnqmq ImsqvsGs-V tkvwa EMRA_ECOLI : 218- 226: lertr IispmtGy-V srrav EMRA_ECOLI : 263- 272: fketq IanmriGqpV tittd EMRA_ECOLI : 274- 283: gqpvt IttdiyGddV kytgk HLY4_ECOLI : 330- 338: qqasv IrapvsGk-V qqlkv HLY4_ECOLI : 413- 421: inlda IedqklGl-V fnviv HLYD_ACTPL : 411- 419: itlea IehpqlGl-V fnsii HLYD_ECOLI : 413- 421: inlda IedqrlGl-V fnvii LCND_LACLA : 384- 393: ipstq IsgmkvGqkV rftvq LCND_LACLA : 443- 452: kdlpn IryglqGktV tiigk LKTD_ACTAC : 329- 337: qqvse IrapvsGt-V qqlkv LKTD_ACTAC : 371- 379: evtal IqnkdiGf-V kegqe LKTD_ACTAC : 376- 385: iqnkd IgfvkeGqeV vikve LKTD_ACTAC : 412- 420: itlda IehpklGl-V fntii LKTD_PASHA : 329- 337: rqasm IrapvsGt-V qqlki LKTD_PASHA : 376- 385: vpnkd IgfvaaGqeV iikve LKTD_PASHA : 412- 420: ispda IeqpnvGl-V fnati PRTE_ERWCH : 71- 79: gnrkv IqhmqgGi-V driqv RTXD_ACTPL : 82- 91: iskve IvasatGklV fsghs RTXD_ACTPL : 329- 337: qlasi IrapvsGt-V qqlkt RTXD_ACTPL : 371- 379: evsal IqnkdvGf-V eigqe RTXD_ACTPL : 412- 420: itlda IehpqlGl-V fnsii J 10: 12.0102 22( 12) G-x(1,2)-V-T Occurences: 22(12) APRE_PSEAE : 357- 360: tprvt Ge-VT mvsad CVAA_ECOLI : 46- 49: rvnvs Ge-VT twpra CVAA_ECOLI : 94- 97: kstrn Gi-VT dnhrr CYAD_BORPE : 207- 210: yrrdv Gl-VT qiaha EMRA_ECOLI : 70- 73: msqvs Gs-VT kvwad EMRA_ECOLI : 269- 273: anmri GqpVT ittdi HLY4_ECOLI : 347- 351: kvhte GgvVT taetl HLY4_ECOLI : 348- 351: vhteg Gv-VT taetl HLY4_ECOLI : 445- 449: iplss GmaVT aeikt HLYD_ACTPL : 345- 349: kthtv GgvVT taetl HLYD_ACTPL : 346- 349: thtvg Gv-VT taetl HLYD_ACTPL : 444- 448: ielgs GmsVT aeikt HLYD_ECOLI : 347- 351: kvhte GgvVT taetl HLYD_ECOLI : 348- 351: vhteg Gv-VT taetl HLYD_ECOLI : 445- 449: iplss GmaVT aeikt LCND_LACLA : 449- 453: ryglq GktVT iigkk LKTD_ACTAC : 347- 350: vhtid Gv-VT taetl LKTD_PASHA : 346- 350: kihti GgvVT taetl LKTD_PASHA : 347- 350: ihtig Gv-VT taetl PRTE_ERWCH : 373- 376: tprvp Gt-VT llsad RTXD_ACTPL : 346- 350: kthtk GgvVT taetl RTXD_ACTPL : 347- 350: thtkg Gv-VT taetl K 11: 12.0102 18( 12) V-x(2)-G-x(1,2)-V Occurences: 18(12) APRE_PSEAE : 68- 74: vkhil VrdGqhV eagep CVAA_ECOLI : 262- 268: vdsls VtvGqmV ntgds CYAD_BORPE : 115- 120: adnsr VaaGd-V llrld EMRA_ECOLI : 83- 88: dntdf VkeGd-V lvtld HLY4_ECOLI : 112- 118: vkeii VkeGesV rkgdv HLY4_ECOLI : 118- 123: keges VrkGd-V llklt HLYD_ACTPL : 112- 118: vkeif VedGqfV ekdql HLYD_ECOLI : 112- 118: vkeii VkeGesV rkgdv HLYD_ECOLI : 118- 123: keges VrkGd-V llklt LCND_LACLA : 199- 205: eiena VssGggV sqdnp LKTD_ACTAC : 112- 118: vkhif VkeGeyV kkgel LKTD_ACTAC : 379- 385: kdigf VkeGqeV vikve LKTD_PASHA : 112- 118: vqeif VkdGqfV ekgql LKTD_PASHA : 379- 385: kdigf VaaGqeV iikve PRTE_ERWCH : 84- 90: vdriq VkdGdrV aagqv PRTE_ERWCH : 90- 95: kdgdr VaaGq-V lltln PRTE_ERWCH : 350- 356: emvdk VwsGlpV elqft RTXD_ACTPL : 112- 118: vkdif VkdGqfV ekgql L 12: 12.0102 18( 12) V-x-G-x(0,1)-V Occurences: 18(12) APRE_PSEAE : 288- 292: eirap VsGyV aglkv APRE_PSEAE : 355- 359: sktpr VtGeV tmvsa CVAA_ECOLI : 44- 48: srrvn VsGeV ttwpr CVAA_ECOLI : 61- 65: niysg VqGfV vrqfv CYAD_BORPE : 296- 299: vltap VdG-V vqqlv CYAD_BORPE : 296- 300: vltap VdGvV qqlva EMRA_ECOLI : 68- 72: qimsq VsGsV tkvwa HLY4_ECOLI : 76- 80: afils VlGqV eivat HLY4_ECOLI : 334- 338: virap VsGkV qqlkv HLYD_ACTPL : 344- 347: lktht VgG-V vttae HLYD_ACTPL : 344- 348: lktht VgGvV ttaet HLYD_ECOLI : 76- 80: afils VlGqV eivat LCND_LACLA : 33- 36: lfill VgG-V iftff LKTD_ACTAC : 333- 337: eirap VsGtV qqlkv LKTD_PASHA : 333- 337: mirap VsGtV qqlki PRTE_ERWCH : 58- 62: dkgva VqGnV vvsgn PRTE_ERWCH : 304- 308: qvrap VaGtV vdmki PRTE_ERWCH : 371- 375: sttpr VpGtV tllsa PRTE_ERWCH : 418- 422: kpgmp VqGfV rtger RTXD_ACTPL : 333- 337: iirap VsGtV qqlkt M 13: 12.0102 23( 12) V-x(0,1)-G-x-V Occurences: 23(12) APRE_PSEAE : 288- 292: eirap VsGyV aglkv APRE_PSEAE : 355- 359: sktpr VtGeV tmvsa CVAA_ECOLI : 44- 48: srrvn VsGeV ttwpr CVAA_ECOLI : 61- 65: niysg VqGfV vrqfv CYAD_BORPE : 206- 209: tyrrd V-GlV tqiah CYAD_BORPE : 296- 300: vltap VdGvV qqlva EMRA_ECOLI : 68- 72: qimsq VsGsV tkvwa HLY4_ECOLI : 76- 80: afils VlGqV eivat HLY4_ECOLI : 334- 338: virap VsGkV qqlkv HLY4_ECOLI : 402- 405: rygyl V-GkV kninl HLYD_ACTPL : 344- 347: lktht V-GgV vttae HLYD_ACTPL : 344- 348: lktht VgGvV ttaet HLYD_ECOLI : 76- 80: afils VlGqV eivat HLYD_ECOLI : 402- 405: rygyl V-GkV kninl LCND_LACLA : 33- 36: lfill V-GgV iftff LKTD_ACTAC : 333- 337: eirap VsGtV qqlkv LKTD_PASHA : 333- 337: mirap VsGtV qqlki LKTD_PASHA : 417- 420: ieqpn V-GlV fnati PRTE_ERWCH : 58- 62: dkgva VqGnV vvsgn PRTE_ERWCH : 304- 308: qvrap VaGtV vdmki PRTE_ERWCH : 371- 375: sttpr VpGtV tllsa PRTE_ERWCH : 418- 422: kpgmp VqGfV rtger RTXD_ACTPL : 333- 337: iirap VsGtV qqlkt RTXD_ACTPL : 376- 379: iqnkd V-GfV eigqe N 14: 12.0102 23( 12) L-x-L-x(2,3)-L Occurences: 23(12) APRE_PSEAE : 138- 144: tlger LeLqrqL lhsrq CVAA_ECOLI : 15- 20: lpgip LwLim-L gsivf CVAA_ECOLI : 232- 238: melqr LeLqkeL vntdv CYAD_BORPE : 266- 272: qafet LvLarkL aaqae EMRA_ECOLI : 23- 29: gkrkr LlLlltL lfiii EMRA_ECOLI : 24- 29: krkrl LlLlt-L lfiii EMRA_ECOLI : 24- 30: krkrl LlLltlL fiiia EMRA_ECOLI : 25- 30: rkrll LlLtl-L fiiia HLY4_ECOLI : 125- 130: kgdvl LkLta-L gaead HLY4_ECOLI : 185- 190: seeev LrLts-L ikeqf HLYD_ACTPL : 66- 72: aylim LfLflaL visiv HLYD_ACTPL : 125- 130: kdqll LhLta-L gadad HLYD_ACTPL : 143- 148: ktkss LsLtk-L eryry HLYD_ACTPL : 165- 170: vaadr LpLie-L tkdef HLYD_ECOLI : 125- 130: kgdvl LkLta-L gaead HLYD_ECOLI : 185- 190: seeev LrLts-L ikeqf LCND_LACLA : 26- 31: stlii LpLfi-L lvggv LCND_LACLA : 26- 32: stlii LpLfilL vggvi LKTD_ACTAC : 6- 12: mktwl LaLydvL srykn LKTD_ACTAC : 125- 130: kgell LkLta-L gaead LKTD_PASHA : 143- 148: ktmas LsLak-L enyry PRTE_ERWCH : 29- 35: deera LrLgwwL vlagf RTXD_ACTPL : 125- 130: kgqll LnLta-L gcdad RTXD_ACTPL : 143- 148: ktkvs LgLer-L dgyry RTXD_ACTPL : 288- 294: kaqed LkLvtqL fksdi O 15: 12.0102 15( 12) L-x(2)-L-x(3,4)-L Occurences: 15(12) APRE_PSEAE : 131- 138: aeqap LptLger-L elqrq APRE_PSEAE : 414- 421: gersl LnyLfkp-L fdrah CVAA_ECOLI : 126- 134: skkit LdtLekqrL qytda CYAD_BORPE : 61- 69: wlari LmaLaagaL vwsvv EMRA_ECOLI : 23- 30: gkrkr LllLltl-L fiiia HLY4_ECOLI : 162- 170: srsie LnkLpelkL pdepy HLYD_ACTPL : 63- 70: rliay LimLflf-L alvis HLYD_ECOLI : 162- 170: srsie LnkLpelkL pdepy LCND_LACLA : 23- 31: rnfst LiiLplfiL lvggv LCND_LACLA : 117- 124: dkkvq LdlLqrs-L tnekn LCND_LACLA : 342- 349: eqagv LhvLpdi-L gmkki LKTD_ACTAC : 5- 12: mktw LlaLydv-L srykn LKTD_PASHA : 274- 281: vyrsk LneLend-L lnvke LKTD_PASHA : 274- 282: vyrsk LneLendlL nvkee PRTE_ERWCH : 45- 52: fggfl LwaLlap-L dkgva RTXD_ACTPL : 63- 70: rliay LimLflf-L aivis P 16: 11.5102 18( 12) L-x(0,1)-P-x(2,3)-L Occurences: 18(12) APRE_PSEAE : 338- 343: rihsg L-PvemL ftafn CVAA_ECOLI : 9- 15: qgrai LlPgipL wliml CVAA_ECOLI : 10- 15: grail L-PgipL wliml CYAD_BORPE : 39- 43: vetef L-Psa-L slqer EMRA_ECOLI : 374- 380: areis LaPvnkL iddiv HLY4_ECOLI : 42- 46: denef L-Pah-L eliet HLY4_ECOLI : 165- 170: ielnk L-PelkL pdepy HLYD_ACTPL : 42- 46: denef L-Pah-L eliet HLYD_ACTPL : 165- 170: vaadr L-PlieL tkdef HLYD_ECOLI : 42- 46: denef L-Pah-L eliet HLYD_ECOLI : 165- 170: ielnk L-PelkL pdepy LCND_LACLA : 26- 31: stlii L-PlfiL lvggv LCND_LACLA : 345- 349: gvlhv L-Pdi-L gmkki LKTD_ACTAC : 42- 46: denef L-Pah-L eliet LKTD_PASHA : 42- 46: desef L-Pah-L dliet LKTD_PASHA : 165- 170: iekes L-PvidL srtef PRTE_ERWCH : 354- 358: kvwsg L-Pve-L qftaf RTXD_ACTPL : 42- 46: denef L-Prh-L eliet Q 17: 11.5102 24( 12) E-x(0,1)-S-x(0,1)-L Occurences: 24(12) APRE_PSEAE : 155- 159: talan ElSaL ranie APRE_PSEAE : 410- 413: fvrtg ErS-L lnylf APRE_PSEAE : 410- 414: fvrtg ErSlL nylfk CVAA_ECOLI : 382- 385: ngmka E-StL flekr CYAD_BORPE : 435- 437: arhag E-S-L ger EMRA_ECOLI : 371- 374: vstar EiS-L apvnk HLY4_ECOLI : 233- 237: nvsrv EkSrL ddfrs HLY4_ECOLI : 473- 475: eesvt E-S-L her HLYD_ACTPL : 278- 281: rlnev E-SdL rqake HLYD_ACTPL : 472- 474: eesvs E-S-L rer HLYD_ECOLI : 233- 237: nlsrv EkSrL ddfss HLYD_ECOLI : 473- 475: eesvt E-S-L rer LCND_LACLA : 8- 12: dkkll EsSeL ydkry LCND_LACLA : 84- 87: geavk EnS-L llkyn LCND_LACLA : 84- 88: geavk EnSlL lkyng LCND_LACLA : 247- 250: aaksq EeS-L ksqfl LCND_LACLA : 248- 250: aksqe E-S-L ksqfl LCND_LACLA : 276- 279: sfnvq EsS-L tgsna LCND_LACLA : 276- 279: sfnvq E-SsL tgsna LKTD_ACTAC : 103- 106: eikpi EnS-L vkhif LKTD_ACTAC : 362- 365: vvvpe EdS-L evtal LKTD_PASHA : 163- 165: taiek E-S-L pvidl LKTD_PASHA : 473- 475: eesvt E-S-L rer PRTE_ERWCH : 183- 186: sidgl EtS-L galqk RTXD_ACTPL : 278- 281: hlkev E-SdL lkaqe RTXD_ACTPL : 366- 370: eddvl EvSaL iqnkd RTXD_ACTPL : 472- 474: eesit E-S-L rer R 18: 11.5102 26( 12) A-x(0,1)-E-x(2,3)-L Occurences: 26(12) APRE_PSEAE : 126- 131: mpagl A-EqapL ptlge APRE_PSEAE : 153- 159: rqtal AnElsaL ranie CVAA_ECOLI : 381- 385: engmk A-Est-L flekr CYAD_BORPE : 262- 268: qtrrq AfEtlvL arkla EMRA_ECOLI : 369- 374: vavst ArEis-L apvnk HLY4_ECOLI : 132- 137: ltalg A-EadtL ktqss HLY4_ECOLI : 285- 291: seils AkEeyqL vtqlf HLY4_ECOLI : 412- 418: ninld AiEdqkL glvfn HLYD_ACTPL : 284- 290: sdlrq AkEeihL itqlf HLYD_ACTPL : 309- 313: kqnve A-Ekq-L slele HLYD_ACTPL : 358- 364: tlmvi ApEddvL evtal HLYD_ACTPL : 410- 416: nitle AiEhpqL glvfn HLYD_ECOLI : 132- 137: ltalg A-EadtL ktqss HLYD_ECOLI : 285- 291: seils AkEeyqL vtqlf HLYD_ECOLI : 412- 418: ninld AiEdqrL glvfn LCND_LACLA : 361- 366: igtpi A-EiypL lkset LKTD_ACTAC : 132- 137: ltalg A-EadtL ktkts LKTD_ACTAC : 159- 165: kslle AvEkdqL pildf LKTD_ACTAC : 284- 290: nevll AkEeqeL vtqlf LKTD_ACTAC : 411- 417: nitld AiEhpkL glvfn LKTD_PASHA : 159- 165: qtllt AiEkesL pvidl LKTD_PASHA : 255- 260: khell AqEnk-L ieaqn PRTE_ERWCH : 120- 125: ydqli ArEar-L laeqr PRTE_ERWCH : 120- 126: ydqli ArEarlL aeqrn RTXD_ACTPL : 284- 290: sdllk AqEdlkL vtqlf RTXD_ACTPL : 359- 365: tlmvi ApEddvL evsal RTXD_ACTPL : 411- 417: titld AiEhpqL glvfn S 19: 11.5102 21( 12) T-x(1,2)-E-x(1,2)-L Occurences: 21(12) APRE_PSEAE : 133- 138: qaplp TlgEr-L elqrq APRE_PSEAE : 267- 272: qvnar TlwEe-L ssary APRE_PSEAE : 408- 413: qvfvr Tg-ErsL lnylf CVAA_ECOLI : 334- 338: rtpas Tq-Em-L tykga CYAD_BORPE : 239- 244: eqarm Tl-EgrL rqsea EMRA_ECOLI : 368- 374: pvavs TarEisL apvnk HLY4_ECOLI : 351- 356: eggvv TtaEt-L mvivp HLY4_ECOLI : 352- 356: ggvvt Ta-Et-L mvivp HLYD_ACTPL : 349- 354: vggvv TtaEt-L mviap HLYD_ACTPL : 350- 354: ggvvt Ta-Et-L mviap HLYD_ECOLI : 351- 356: eggvv TtaEt-L mvivp HLYD_ECOLI : 352- 356: ggvvt Ta-Et-L mvivp LCND_LACLA : 224- 229: qaqqa Tl-EadL knqkn LKTD_ACTAC : 350- 355: idgvv TtaEt-L mvvvp LKTD_ACTAC : 351- 355: dgvvt Ta-Et-L mvvvp LKTD_PASHA : 350- 355: iggvv TtaEt-L miivp LKTD_PASHA : 351- 355: ggvvt Ta-Et-L miivp PRTE_ERWCH : 106- 111: avdar TtsEg-L gsqyd PRTE_ERWCH : 107- 111: vdart Ts-Eg-L gsqyd RTXD_ACTPL : 350- 355: kggvv TtaEt-L mviap RTXD_ACTPL : 351- 355: ggvvt Ta-Et-L mviap T 20: 11.5102 19( 12) S-x(3,4)-E-x(2,3)-L Occurences: 19(12) APRE_PSEAE : 319- 326: vpnsd Slev-Egq-L avnlv CVAA_ECOLI : 196- 204: nllsl Sgqn-EqnaL qittl CYAD_BORPE : 418- 426: dirtg SrrliEyl-L spvar EMRA_ECOLI : 367- 374: tpvav Star-Eis-L apvnk HLY4_ECOLI : 157- 165: ryqil Srsi-ElnkL pelkl HLY4_ECOLI : 284- 291: eseil Sake-Eyq-L vtqlf HLYD_ACTPL : 228- 236: rkyeg Ssrv-EnerL kdlkk HLYD_ECOLI : 157- 165: ryqil Srsi-ElnkL pelkl HLYD_ECOLI : 284- 291: eseil Sake-Eyq-L vtqlf LCND_LACLA : 271- 279: ksqiq SfnvqEss-L tgsna LCND_LACLA : 302- 311: ksqal SasnkEmtdL nstlt LKTD_ACTAC : 273- 282: evyka SlmqvEnevL lakee LKTD_ACTAC : 433- 441: dkktl SteekEip-L sagme LKTD_PASHA : 6- 13: mkiwl Sgiy-Eff-L ryknt PRTE_ERWCH : 22- 29: mrdra Srde-Era-L rlgww PRTE_ERWCH : 178- 186: dgvra SidglEts-L galqk PRTE_ERWCH : 194- 203: lqkvm SskqsEqatL sqqlq PRTE_ERWCH : 195- 203: qkvms Skqs-EqatL sqqlq RTXD_ACTPL : 227- 236: irkye SasriEkekL sdlkk Number of patterns evaluated by Pratt:5655 Total running time: 6 seconds