------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 18 sequences from file HIS_ACID_PHOSPHAT_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 18 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename HIS_ACID_PHOSPHAT_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: AGP_ECOLI 413 PHYA_ASPAW 467 PHYA_ASPNG 467 PHYB_ASPAW 479 PHYB_ASPNG 479 PPA1_SCHPO 453 PPA2_SCHPO 463 PPA3_YEAST 467 PPA5_YEAST 467 PPAB_YEAST 467 PPAC_YEAST 467 PPAL_HUMAN 423 PPAL_MOUSE 421 PPAL_RAT 423 PPAP_HUMAN 386 PPAP_RAT 381 PPAX_CAEEL 435 PPA_ECOLI 432 Pratt run started at Thu Feb 6 19:54:18 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.5102 18( 18) R-H-x(2)-R 2: 11.5102 28( 18) A-x(2)-L-x(2,4)-G 3: 11.5102 35( 18) A-x(1,2)-L-x(2,3)-G 4: 11.5102 37( 18) L-x(1,2)-A-x(0,1)-L 5: 11.5102 34( 18) S-x(0,1)-L-x(2,3)-L 6: 11.5102 24( 18) L-x(3)-G-x(0,2)-I 7: 11.5102 28( 18) L-x(0,1)-S-x(4,5)-L 8: 11.5102 20( 18) D-x-L-x(1,3)-L 9: 11.5102 37( 18) L-x(4,5)-S-x(4,5)-L 10: 11.5102 21( 18) S-x(2)-N-x(1,3)-L 11: 11.5102 33( 18) A-x(1,2)-L-x(3,4)-G 12: 11.5102 24( 18) L-x(0,2)-A-x-L 13: 11.5102 29( 18) S-x(2,3)-N-x(0,1)-L 14: 11.5102 33( 18) S-x(4,5)-L-x(1,2)-A 15: 11.5102 30( 18) G-x(1,2)-L-x(0,1)-T 16: 11.0102 25( 18) E-x(3,4)-L-x(1,3)-V 17: 11.0102 42( 18) L-x(1,3)-A-x(0,1)-L 18: 11.0102 24( 18) L-x(2,3)-G-x(1,3)-S 19: 11.0102 30( 18) G-x(0,1)-G-x(2,4)-E 20: 11.0102 27( 18) D-x(2,3)-T-x(2,4)-E Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 20.6481 18( 18) R-H-[GN]-x-R-x-[AP]-x(2)-[ADGNST] B 2: 17.3750 18( 18) R-H-x(2)-R-x-[AP]-x(2)-[ADGNST] C 3: 12.6540 26( 18) L-x(1,3)-A-x(0,1)-L-[ADGNTV] D 4: 11.5102 28( 18) A-x(2)-L-x(2,4)-G E 5: 11.5102 35( 18) A-x(1,2)-L-x(2,3)-G F 6: 11.5102 37( 18) L-x(1,2)-A-x(0,1)-L G 7: 11.5102 34( 18) S-x(0,1)-L-x(2,3)-L H 8: 11.5102 24( 18) L-x(3)-G-x(0,2)-I I 9: 11.5102 28( 18) L-x(0,1)-S-x(4,5)-L J 10: 11.5102 20( 18) D-x-L-x(1,3)-L K 11: 11.5102 37( 18) L-x(4,5)-S-x(4,5)-L L 12: 11.5102 21( 18) S-x(2)-N-x(1,3)-L M 13: 11.5102 33( 18) A-x(1,2)-L-x(3,4)-G N 14: 11.5102 24( 18) L-x(0,2)-A-x-L O 15: 11.5102 29( 18) S-x(2,3)-N-x(0,1)-L P 16: 11.5102 33( 18) S-x(4,5)-L-x(1,2)-A Q 17: 11.5102 30( 18) G-x(1,2)-L-x(0,1)-T R 18: 11.0102 25( 18) E-x(3,4)-L-x(1,3)-V S 19: 11.0102 24( 18) L-x(2,3)-G-x(1,3)-S T 20: 11.0102 30( 18) G-x(0,1)-G-x(2,4)-E Best patterns with alignements: fitness hits(seqs) Pattern A 1: 20.6481 18( 18) R-H-[GN]-x-R-x-[AP]-x(2)-[ADGNST] Occurences: 18(18) AGP_ECOLI : 39- 48: vlmms RHNlRaPlaN ngsvl PHYA_ASPAW : 81- 90: aqvls RHGaRyPteS kgkky PHYA_ASPNG : 81- 90: aqvls RHGaRyPtdS kgkky PHYB_ASPAW : 81- 90: vimvk RHGeRyPspS agkdi PHYB_ASPNG : 81- 90: vimvk RHGeRyPspS agksi PPA1_SCHPO : 68- 77: vhtlq RHGsRnPtgG naafd PPA2_SCHPO : 68- 77: vhllq RHGsRnPtgD dtatd PPA3_YEAST : 74- 83: lqmla RHGeRyPtyS kgati PPA5_YEAST : 74- 83: lqmvg RHGeRyPtvS lakti PPAB_YEAST : 74- 83: vqmvg RHGeRyPtvS kaksi PPAC_YEAST : 74- 83: vqmvg RHGeRyPtvS kaksi PPAL_HUMAN : 41- 50: vtlly RHGdRsPvkT ypkdp PPAL_MOUSE : 39- 48: vtlly RHGdRsPvkT ypkdp PPAL_RAT : 41- 50: vtlly RHGdRsPvkA ypkdp PPAP_HUMAN : 43- 52: vtlvf RHGdRsPidT fptdp PPAP_RAT : 42- 51: vtlvf RHGdRgPieT fpndp PPAX_CAEEL : 37- 46: vqtiw RHGdRsAleG lfpis PPA_ECOLI : 38- 47: vvivs RHGvRaPtkA tqlmq B 2: 17.3750 18( 18) R-H-x(2)-R-x-[AP]-x(2)-[ADGNST] Occurences: 18(18) AGP_ECOLI : 39- 48: vlmms RHnlRaPlaN ngsvl PHYA_ASPAW : 81- 90: aqvls RHgaRyPteS kgkky PHYA_ASPNG : 81- 90: aqvls RHgaRyPtdS kgkky PHYB_ASPAW : 81- 90: vimvk RHgeRyPspS agkdi PHYB_ASPNG : 81- 90: vimvk RHgeRyPspS agksi PPA1_SCHPO : 68- 77: vhtlq RHgsRnPtgG naafd PPA2_SCHPO : 68- 77: vhllq RHgsRnPtgD dtatd PPA3_YEAST : 74- 83: lqmla RHgeRyPtyS kgati PPA5_YEAST : 74- 83: lqmvg RHgeRyPtvS lakti PPAB_YEAST : 74- 83: vqmvg RHgeRyPtvS kaksi PPAC_YEAST : 74- 83: vqmvg RHgeRyPtvS kaksi PPAL_HUMAN : 41- 50: vtlly RHgdRsPvkT ypkdp PPAL_MOUSE : 39- 48: vtlly RHgdRsPvkT ypkdp PPAL_RAT : 41- 50: vtlly RHgdRsPvkA ypkdp PPAP_HUMAN : 43- 52: vtlvf RHgdRsPidT fptdp PPAP_RAT : 42- 51: vtlvf RHgdRgPieT fpndp PPAX_CAEEL : 37- 46: vqtiw RHgdRsAleG lfpis PPA_ECOLI : 38- 47: vvivs RHgvRaPtkA tqlmq C 3: 12.6540 26( 18) L-x(1,3)-A-x(0,1)-L-[ADGNTV] Occurences: 26(18) AGP_ECOLI : 42- 47: msrhn Lr--ApLA nngsv AGP_ECOLI : 318- 323: snias Llt-A-LD fkpyq AGP_ECOLI : 319- 323: niasl Lt--A-LD fkpyq PHYA_ASPAW : 323- 328: gyane Li--ArLT hspvh PHYA_ASPAW : 369- 373: giisi Lf--A-LG lyngt PHYA_ASPNG : 323- 328: gyane Li--ArLT hspvh PHYA_ASPNG : 369- 373: giisi Lf--A-LG lyngt PHYB_ASPAW : 9- 14: tsllt Lac-A-LA tgasa PHYB_ASPAW : 345- 349: nitpi La--A-LG vlipn PHYB_ASPNG : 9- 14: tsllt Lac-A-LA tgasa PHYB_ASPNG : 345- 349: nitpi La--A-LG vlipn PPA1_SCHPO : 418- 423: dgmce Ly--AyLN spvrv PPA2_SCHPO : 428- 433: dglce Ls--AyLN ssvrv PPA3_YEAST : 10- 15: vvysv Laa-A-LV nagti PPA3_YEAST : 10- 15: vvysv La--AaLV nagti PPA5_YEAST : 10- 15: vvysi La--AsLA nagti PPAB_YEAST : 10- 15: avysi La--AsLV nagti PPAC_YEAST : 10- 15: avysi La--AsLV nagti PPAL_HUMAN : 293- 298: ttlva Lqm-A-LD vynge PPAL_MOUSE : 291- 296: ttlva Lqm-A-LN vyngk PPAL_RAT : 293- 298: ttlva Lqm-A-LN vyngk PPAP_HUMAN : 296- 301: ttvsg Lqm-A-LD vyngl PPAP_HUMAN : 353- 360: spscp LerfAeLV gpvip PPAP_RAT : 8- 15: avplh LvgtAsLT lgfll PPAX_CAEEL : 319- 325: sshdq Lvy-AlLV tlgit PPA_ECOLI : 76- 81: prgge Li--AyLG hyqrq PPA_ECOLI : 296- 302: tplld LiktA-LT phppq D 4: 11.5102 28( 18) A-x(2)-L-x(2,4)-G Occurences: 28(18) AGP_ECOLI : 234- 242: nslvd AftLqyyeG fpmdq PHYA_ASPAW : 76- 83: crvtf AqvLsrh-G arypt PHYA_ASPAW : 125- 132: nyslg AddLtpf-G eqelv PHYA_ASPAW : 371- 377: isilf AlgLyn--G tkpls PHYA_ASPNG : 76- 83: crvtf AqvLsrh-G arypt PHYA_ASPNG : 125- 132: nyslg AddLtpf-G eqelv PHYA_ASPNG : 371- 377: isilf AlgLyn--G tkpls PHYB_ASPAW : 10- 16: slltl AcaLat--G asafs PHYB_ASPAW : 389- 396: rlscq AtaLsde-G tyvrl PHYB_ASPNG : 10- 16: slltl AcaLat--G asafs PHYB_ASPNG : 389- 396: rlscq AtaLsdk-G tyvrl PPA1_SCHPO : 124- 131: ieaan AdaLsss-G rvelf PPA2_SCHPO : 127- 134: ikaen AdqLsss-G rielf PPA2_SCHPO : 319- 325: yvnnl AnnLrk--G vnnas PPA3_YEAST : 11- 18: vysvl AaaLvna-G tiplg PPA3_YEAST : 206- 212: amsag AntLsa--G nacpg PPA3_YEAST : 264- 271: lfawc AyeLnar-G ysdvc PPA5_YEAST : 11- 18: vysil AasLana-G tiplg PPAB_YEAST : 11- 18: vysil AasLvna-G tiplg PPAC_YEAST : 11- 18: vysil AasLvna-G tiplg PPAL_HUMAN : 11- 19: sgwsr AalLqlllG vnlvv PPAL_MOUSE : 9- 17: tgwsq AalLqfllG mcltv PPAL_RAT : 11- 19: sgwsq AalLqfllG mclmv PPAP_HUMAN : 11- 17: lllar AasLsl--G flfll PPAP_RAT : 3- 10: mr AvpLhlv-G taslt PPAP_RAT : 298- 304: sglqm AleLyn--G llppy PPAX_CAEEL : 114- 120: rtiis AmsLly--G mfppg PPA_ECOLI : 90- 98: rqrlv AdgLlakkG cpqsg E 5: 11.5102 35( 18) A-x(1,2)-L-x(2,3)-G Occurences: 35(18) AGP_ECOLI : 44- 50: rhnlr Ap-LannG svleq PHYA_ASPAW : 76- 83: crvtf AqvLsrhG arypt PHYA_ASPAW : 125- 132: nyslg AddLtpfG eqelv PHYA_ASPAW : 371- 377: isilf AlgLyn-G tkpls PHYA_ASPNG : 76- 83: crvtf AqvLsrhG arypt PHYA_ASPNG : 125- 132: nyslg AddLtpfG eqelv PHYA_ASPNG : 371- 377: isilf AlgLyn-G tkpls PHYB_ASPAW : 10- 16: slltl AcaLat-G asafs PHYB_ASPAW : 389- 396: rlscq AtaLsdeG tyvrl PHYB_ASPNG : 10- 16: slltl AcaLat-G asafs PHYB_ASPNG : 389- 396: rlscq AtaLsdkG tyvrl PPA1_SCHPO : 124- 131: ieaan AdaLsssG rvelf PPA2_SCHPO : 127- 134: ikaen AdqLsssG rielf PPA2_SCHPO : 319- 325: yvnnl AnnLrk-G vnnas PPA3_YEAST : 11- 18: vysvl AaaLvnaG tiplg PPA3_YEAST : 12- 18: ysvla Aa-LvnaG tiplg PPA3_YEAST : 206- 212: amsag AntLsa-G nacpg PPA3_YEAST : 264- 271: lfawc AyeLnarG ysdvc PPA5_YEAST : 11- 18: vysil AasLanaG tiplg PPA5_YEAST : 12- 18: ysila As-LanaG tiplg PPAB_YEAST : 11- 18: vysil AasLvnaG tiplg PPAB_YEAST : 12- 18: ysila As-LvnaG tiplg PPAC_YEAST : 11- 18: vysil AasLvnaG tiplg PPAC_YEAST : 12- 18: ysila As-LvnaG tiplg PPAL_HUMAN : 253- 258: qqaek Ar-Lqg-G vllaq PPAL_MOUSE : 251- 256: eqvqk Ar-Lqg-G vllaq PPAL_RAT : 253- 258: dqvqk Ar-Lqg-G vllaq PPAP_HUMAN : 11- 17: lllar AasLsl-G flfll PPAP_HUMAN : 12- 17: llara As-Lsl-G flfll PPAP_RAT : 3- 10: mr AvpLhlvG taslt PPAP_RAT : 12- 17: hlvgt As-Ltl-G fllll PPAP_RAT : 298- 304: sglqm AleLyn-G llppy PPAX_CAEEL : 114- 120: rtiis AmsLly-G mfppg PPAX_CAEEL : 322- 328: dqlvy Al-LvtlG itdvv PPA_ECOLI : 165- 171: anvtd Ai-LsraG gsiad F 6: 11.5102 37( 18) L-x(1,2)-A-x(0,1)-L Occurences: 37(18) AGP_ECOLI : 42- 46: msrhn Lr-ApL anngs AGP_ECOLI : 318- 322: snias LltA-L dfkpy AGP_ECOLI : 319- 322: niasl Lt-A-L dfkpy PHYA_ASPAW : 323- 327: gyane Li-ArL thspv PHYA_ASPAW : 369- 372: giisi Lf-A-L glyng PHYA_ASPNG : 323- 327: gyane Li-ArL thspv PHYA_ASPNG : 369- 372: giisi Lf-A-L glyng PHYB_ASPAW : 9- 13: tsllt LacA-L atgas PHYB_ASPAW : 345- 348: nitpi La-A-L gvlip PHYB_ASPAW : 403- 408: yvrlv LneAvL pfndc PHYB_ASPNG : 9- 13: tsllt LacA-L atgas PHYB_ASPNG : 345- 348: nitpi La-A-L gvlip PHYB_ASPNG : 403- 408: yvrlv LneAvL pfndc PPA1_SCHPO : 418- 422: dgmce Ly-AyL nspvr PPA2_SCHPO : 428- 432: dglce Ls-AyL nssvr PPA3_YEAST : 10- 14: vvysv LaaA-L vnagt PPA3_YEAST : 10- 14: vvysv La-AaL vnagt PPA3_YEAST : 313- 318: svgan LfnAtL kllkq PPA5_YEAST : 10- 14: vvysi La-AsL anagt PPAB_YEAST : 10- 14: avysi La-AsL vnagt PPAC_YEAST : 10- 14: avysi La-AsL vnagt PPAL_HUMAN : 79- 83: lqhwe LgqA-L rqryh PPAL_HUMAN : 290- 293: ahdtt Lv-A-L qmald PPAL_HUMAN : 293- 297: ttlva LqmA-L dvyng PPAL_MOUSE : 77- 81: lqhwe LgqA-L rqryh PPAL_MOUSE : 288- 291: ahdtt Lv-A-L qmaln PPAL_MOUSE : 291- 295: ttlva LqmA-L nvyng PPAL_RAT : 79- 83: lqhwe LgqA-L rqryh PPAL_RAT : 290- 293: ahdtt Lv-A-L qmaln PPAL_RAT : 293- 297: ttlva LqmA-L nvyng PPAP_HUMAN : 120- 123: samtn La-A-L fppeg PPAP_HUMAN : 296- 300: ttvsg LqmA-L dvyng PPAP_RAT : 119- 122: samtn La-A-L fppeg PPAP_RAT : 295- 299: ttvsg LqmA-L elyng PPAX_CAEEL : 319- 323: sshdq LvyA-L lvtlg PPAX_CAEEL : 319- 324: sshdq LvyAlL vtlgi PPA_ECOLI : 76- 80: prgge Li-AyL ghyqr PPA_ECOLI : 212- 216: descs LtqA-L pselk PPA_ECOLI : 332- 336: tnlan LggA-L elnwt G 7: 11.5102 34( 18) S-x(0,1)-L-x(2,3)-L Occurences: 34(18) AGP_ECOLI : 317- 322: dsnia SlLta-L dfkpy AGP_ECOLI : 317- 322: dsnia S-LltaL dfkpy PHYA_ASPAW : 367- 372: dngii SiLfa-L glyng PHYA_ASPNG : 367- 372: dngii SiLfa-L glyng PHYB_ASPAW : 5- 9: mprt S-Llt-L acala PHYB_ASPAW : 317- 321: vyana S-Ltl-L nqgpk PHYB_ASPAW : 428- 434: lanyt SiLnknL pdytt PHYB_ASPNG : 5- 9: mprt S-Llt-L acala PHYB_ASPNG : 317- 321: vyana S-Ltl-L nqgpk PHYB_ASPNG : 428- 434: lanyt SiLnknL pdytt PPA1_SCHPO : 309- 314: gayan S-LansL rsven PPA2_SCHPO : 7- 11: klsgi S-Lwl-L aasiv PPA3_YEAST : 8- 14: ksvvy SvLaaaL vnagt PPA3_YEAST : 105- 109: rqfng S-Lsf-L nddye PPA5_YEAST : 8- 14: ksvvy SiLaasL anagt PPA5_YEAST : 105- 109: rqfng S-Lsf-L nddye PPAB_YEAST : 8- 14: ksavy SiLaasL vnagt PPAC_YEAST : 8- 14: ksavy SiLaasL vnagt PPAL_HUMAN : 275- 280: lmatt SqLpk-L lvysa PPAL_HUMAN : 275- 281: lmatt SqLpklL vysah PPAL_HUMAN : 390- 395: lavcg SiLfl-L ivlll PPAL_MOUSE : 388- 393: lavcg SiLfl-L ivlll PPAL_RAT : 390- 395: lavcg SiLfl-L ivlll PPAP_HUMAN : 15- 19: raasl S-Lgf-L fllff PPAP_HUMAN : 29- 35: fwldr SvLakeL kfvtl PPAP_HUMAN : 239- 244: klrel SeLsl-L slygi PPAP_HUMAN : 242- 246: elsel S-Lls-L ygihk PPAP_HUMAN : 294- 300: hdttv SgLqmaL dvyng PPAP_RAT : 206- 212: lfeiw SrLydpL ycesv PPAP_RAT : 238- 243: klkel SeLsl-L slygi PPAP_RAT : 241- 245: elsel S-Lls-L ygihk PPAP_RAT : 293- 299: ydttv SgLqmaL elyng PPAX_CAEEL : 42- 47: rhgdr SaLeg-L fpise PPA_ECOLI : 10- 15: lipfl SlLip-L tpqsa PPA_ECOLI : 10- 15: lipfl S-LlipL tpqsa PPA_ECOLI : 211- 216: qdesc S-LtqaL pselk PPA_ECOLI : 234- 239: ltgav S-LasmL teifl H 8: 11.5102 24( 18) L-x(3)-G-x(0,2)-I Occurences: 24(18) AGP_ECOLI : 386- 393: aqrvt LelsGcpI dadgf PHYA_ASPAW : 136- 141: fgeqe LvnsG--I kfyqr PHYA_ASPNG : 136- 141: fgeqe LvnsG--I kfyqr PHYB_ASPAW : 345- 352: nitpi LaalGvlI pnedl PHYB_ASPNG : 345- 352: nitpi LaalGvlI pnedl PPA1_SCHPO : 250- 255: tnddi LnlyG--I csyei PPA2_SCHPO : 130- 136: enadq LsssGr-I elfdl PPA3_YEAST : 14- 20: vlaaa LvnaGt-I plgel PPA3_YEAST : 345- 350: dilny LttaG--I iddkn PPA3_YEAST : 345- 351: dilny LttaGi-I ddknn PPA5_YEAST : 14- 20: ilaas LanaGt-I plgkl PPA5_YEAST : 345- 350: dilnf LttaG--I iddkn PPA5_YEAST : 345- 351: dilnf LttaGi-I ddknn PPAB_YEAST : 14- 20: ilaas LvnaGt-I plgkl PPAB_YEAST : 345- 350: dilny LttiG--I iddkn PPAB_YEAST : 345- 351: dilny LttiGi-I ddknn PPAC_YEAST : 14- 20: ilaas LvnaGt-I plgkl PPAC_YEAST : 345- 350: dilny LttiG--I iddqn PPAC_YEAST : 345- 351: dilny LttiGi-I ddqnn PPAL_HUMAN : 385- 391: eviva LavcGs-I lflli PPAL_MOUSE : 239- 244: kdfsf LflfG--I heqvq PPAL_MOUSE : 383- 389: eviva LavcGs-I lflli PPAL_RAT : 241- 246: kdfsf LflfG--I hdqvq PPAL_RAT : 385- 391: eviva LavcGs-I lflli PPAP_HUMAN : 244- 249: selsl LslyG--I hkqke PPAP_RAT : 243- 248: selsl LslyG--I hkqke PPAX_CAEEL : 324- 329: lvyal LvtlG--I tdvvk PPA_ECOLI : 167- 174: vtdai LsraGgsI adftg I 9: 11.5102 28( 18) L-x(0,1)-S-x(4,5)-L Occurences: 28(18) AGP_ECOLI : 287- 295: nvakp LvSyidkaL vtdrt PHYA_ASPAW : 278- 284: tvdtk L-Spfcd-L fthde PHYA_ASPNG : 12- 20: llply LlSgvtsgL avpas PHYA_ASPNG : 13- 20: lplyl L-SgvtsgL avpas PHYA_ASPNG : 278- 284: tvdtk L-Spfcd-L fthde PHYB_ASPAW : 385- 392: ltier L-ScqataL sdegt PHYB_ASPNG : 385- 392: ltier L-ScqataL sdkgt PPA1_SCHPO : 127- 135: anada LsSsgrveL fdmgr PPA2_SCHPO : 3- 10: mk L-SgislwL laasi PPA2_SCHPO : 130- 138: enadq LsSsgrieL fdlgr PPA3_YEAST : 251- 259: nkgln LtSkdantL fawca PPA5_YEAST : 251- 259: nkgln LtStdastL fswca PPAB_YEAST : 2- 10: m LkSavysiL aaslv PPAB_YEAST : 235- 242: ydtky L-SgiakrL nkenk PPAC_YEAST : 2- 10: m LkSavysiL aaslv PPAC_YEAST : 235- 242: ydtky L-SgiakrL nkenk PPAL_HUMAN : 111- 118: dfdrt LmSaean-L aglfp PPAL_MOUSE : 109- 116: dfdrt LmSaean-L aglfp PPAL_RAT : 111- 118: dfdrt LmSaean-L aglfp PPAP_HUMAN : 14- 21: araas L-SlgflfL lffwl PPAP_HUMAN : 113- 120: dvdrt LmSamtn-L aalfp PPAP_HUMAN : 148- 154: vhtvp L-Sedql-L ylpfr PPAP_HUMAN : 238- 244: tklre L-Selsl-L slygi PPAP_RAT : 112- 119: dvdrt LmSamtn-L aalfp PPAP_RAT : 147- 153: vhtvs L-Sedrl-L ylpfr PPAP_RAT : 237- 243: tklke L-Selsl-L slygi PPAX_CAEEL : 414- 421: lcets LsSissv-L nnkiw PPAX_CAEEL : 414- 421: lcets L-SsissvL nnkiw PPA_ECOLI : 9- 15: ilipf L-Sllip-L tpqsa J 10: 11.5102 20( 18) D-x-L-x(1,3)-L Occurences: 20(18) AGP_ECOLI : 373- 377: qlrna DaLt--L qapaq PHYA_ASPAW : 294- 299: ewihy DyLqs-L kkyyg PHYA_ASPNG : 294- 299: ewiny DyLqs-L kkyyg PHYB_ASPAW : 226- 232: dqttc DnLtyqL pqfkv PHYB_ASPNG : 226- 232: dqttc DnLtyqL pqfkv PPA1_SCHPO : 248- 252: nltnd DiLn--L ygics PPA2_SCHPO : 423- 428: psgas DgLce-L sayln PPA3_YEAST : 340- 345: fthdt DiLny-L ttagi PPA5_YEAST : 340- 345: fthdt DiLnf-L ttagi PPAB_YEAST : 340- 345: fthdt DiLny-L ttigi PPAC_YEAST : 340- 345: fthdt DiLny-L ttigi PPAL_HUMAN : 353- 357: rcplq DfLr--L tepvv PPAL_MOUSE : 351- 355: rcplq DfLr--L tepvi PPAL_RAT : 353- 357: rcplq DfLr--L tepvi PPAP_HUMAN : 151- 156: vplse DqLly-L pfrnc PPAP_RAT : 150- 155: vslse DrLly-L pfrdc PPAP_RAT : 188- 193: yksfi DtLps-L sgfed PPAX_CAEEL : 303- 308: encsi DyLkp-L kfyay PPAX_CAEEL : 317- 323: ayssh DqLvyaL lvtlg PPA_ECOLI : 144- 150: dtssp DpLfnpL ktgvc K 11: 11.5102 37( 18) L-x(4,5)-S-x(4,5)-L Occurences: 37(18) AGP_ECOLI : 308- 318: pkitv Lvghd-Snias-L ltald AGP_ECOLI : 308- 319: pkitv Lvghd-SniaslL taldf PHYA_ASPAW : 116- 128: gkyaf LktynySlgaddL tpfge PHYA_ASPNG : 8- 20: vsavl LplyllSgvtsgL avpas PHYA_ASPNG : 116- 128: gkyaf LktynySlgaddL tpfge PHYB_ASPAW : 380- 392: pmggh LtierlScqataL sdegt PHYB_ASPAW : 423- 434: gyscp Lanyt-SilnknL pdytt PHYB_ASPNG : 380- 392: pmggh LtierlScqataL sdkgt PHYB_ASPNG : 423- 434: gyscp Lanyt-SilnknL pdytt PPA1_SCHPO : 252- 262: ddiln Lygic-Syeia-L qdyse PPA2_SCHPO : 193- 204: tnfiv Lpedd-SagansL amyys PPA3_YEAST : 318- 329: lfnat LkllkqSetqd-L kvwls PPA5_YEAST : 84- 95: yptvs LaktikStwyk-L snytr PPAB_YEAST : 2- 14: m LksavySilaasL vnagt PPAC_YEAST : 2- 14: m LksavySilaasL vnagt PPAL_HUMAN : 270- 280: rknlt Lmatt-Sqlpk-L lvysa PPAL_HUMAN : 270- 281: rknlt Lmatt-SqlpklL vysah PPAL_HUMAN : 385- 395: eviva Lavcg-Silfl-L ivlll PPAL_MOUSE : 268- 278: lknlt Lmatt-Sqfpk-L lvysa PPAL_MOUSE : 268- 279: lknlt Lmatt-SqfpklL vysah PPAL_MOUSE : 383- 393: eviva Lavcg-Silfl-L ivlll PPAL_RAT : 270- 280: lknlt Lmatt-Sqfpk-L lvysa PPAL_RAT : 270- 281: lknlt Lmatt-SqfpklL vysah PPAL_RAT : 385- 395: eviva Lavcg-Silfl-L ivlll PPAP_HUMAN : 7- 19: raapl LlaraaSlslgfL fllff PPAP_HUMAN : 8- 19: aapll Laraa-SlslgfL fllff PPAP_HUMAN : 202- 213: lhgqd Lfgiw-SkvydpL ycesv PPAP_HUMAN : 306- 318: dvyng LlppyaSchlteL yfekg PPAP_HUMAN : 307- 318: vyngl Lppya-SchlteL yfekg PPAP_HUMAN : 342- 353: hepyp LmlpgcSpscp-L erfae PPAP_RAT : 8- 19: avplh Lvgta-SltlgfL lllsl PPAP_RAT : 180- 190: eflkr Lqpyk-Sfidt-L pslsg PPAP_RAT : 201- 212: fedqd Lfeiw-SrlydpL ycesv PPAP_RAT : 305- 317: elyng LlppyaSchimeL yqdng PPAP_RAT : 306- 317: lyngl Lppya-SchimeL yqdng PPAX_CAEEL : 65- 76: gglge LtpmgmSemnn-L gtifr PPAX_CAEEL : 107- 118: irstn LnrtiiSamsl-L ygmfp PPAX_CAEEL : 308- 319: dylkp LkfyaySshdq-L vyall PPAX_CAEEL : 409- 421: pdymt LcetslSsissvL nnkiw PPA_ECOLI : 5- 15: mkai Lipfl-Sllip-L tpqsa PPA_ECOLI : 229- 239: adnvs Ltgav-Slasm-L teifl L 12: 11.5102 21( 18) S-x(2)-N-x(1,3)-L Occurences: 21(18) AGP_ECOLI : 350- 356: qrwhd SkaNrd-L mkiey PHYA_ASPAW : 204- 210: visea SssNnt-L dpgtc PHYA_ASPAW : 205- 210: iseas SsnNt--L dpgtc PHYA_ASPNG : 204- 210: visea SssNnt-L dpgtc PHYA_ASPNG : 205- 210: iseas SsnNt--L dpgtc PHYB_ASPAW : 428- 434: lanyt SilNkn-L pdytt PHYB_ASPNG : 428- 434: lanyt SilNkn-L pdytt PPA1_SCHPO : 309- 314: gayan SlaNs--L rsven PPA2_SCHPO : 229- 235: eaaht SwrNvf-L kpian PPA3_YEAST : 442- 449: vcnvs SvsNvteL tfywd PPA5_YEAST : 442- 449: vcnvs SvsNsteL tfywd PPAB_YEAST : 442- 449: vcnvs SvsNsteL tffwd PPAC_YEAST : 442- 449: vcnvs SvsNsteL tffwd PPAL_HUMAN : 179- 186: eyqne SsrNaqfL dmvan PPAL_MOUSE : 177- 184: eyqnr SiqNaqfL nmvan PPAL_RAT : 179- 186: eyqnm SiqNaqfL dmvan PPAP_HUMAN : 130- 136: ppegv SiwNpi-L lwqpi PPAP_HUMAN : 130- 137: ppegv SiwNpilL wqpip PPAP_HUMAN : 217- 223: plyce SvhNft-L pswat PPAP_RAT : 129- 135: ppegi SiwNpr-L lwqpi PPAP_RAT : 129- 136: ppegi SiwNprlL wqpip PPAX_CAEEL : 71- 76: tpmgm SemNn--L gtifr PPA_ECOLI : 223- 229: selkv SadNvs-L tgavs M 13: 11.5102 33( 18) A-x(1,2)-L-x(3,4)-G Occurences: 33(18) AGP_ECOLI : 44- 50: rhnlr Ap-Lann-G svleq AGP_ECOLI : 234- 242: nslvd AftLqyyeG fpmdq PHYA_ASPAW : 76- 83: crvtf AqvLsrh-G arypt PHYA_ASPAW : 125- 132: nyslg AddLtpf-G eqelv PHYA_ASPNG : 76- 83: crvtf AqvLsrh-G arypt PHYA_ASPNG : 125- 132: nyslg AddLtpf-G eqelv PHYB_ASPAW : 389- 396: rlscq AtaLsde-G tyvrl PHYB_ASPNG : 389- 396: rlscq AtaLsdk-G tyvrl PPA1_SCHPO : 124- 131: ieaan AdaLsss-G rvelf PPA2_SCHPO : 127- 134: ikaen AdqLsss-G rielf PPA3_YEAST : 11- 18: vysvl AaaLvna-G tiplg PPA3_YEAST : 12- 18: ysvla Aa-Lvna-G tiplg PPA3_YEAST : 264- 271: lfawc AyeLnar-G ysdvc PPA5_YEAST : 11- 18: vysil AasLana-G tiplg PPA5_YEAST : 12- 18: ysila As-Lana-G tiplg PPAB_YEAST : 11- 18: vysil AasLvna-G tiplg PPAB_YEAST : 12- 18: ysila As-Lvna-G tiplg PPAC_YEAST : 11- 18: vysil AasLvna-G tiplg PPAC_YEAST : 12- 18: ysila As-Lvna-G tiplg PPAL_HUMAN : 11- 19: sgwsr AalLqlllG vnlvv PPAL_HUMAN : 12- 19: gwsra Al-LqlllG vnlvv PPAL_HUMAN : 119- 126: aeanl Ag-LfppnG mqrfn PPAL_MOUSE : 9- 17: tgwsq AalLqfllG mcltv PPAL_MOUSE : 10- 17: gwsqa Al-LqfllG mcltv PPAL_RAT : 11- 19: sgwsq AalLqfllG mclmv PPAL_RAT : 12- 19: gwsqa Al-LqfllG mclmv PPAP_HUMAN : 121- 128: amtnl Aa-LfppeG vsiwn PPAP_HUMAN : 189- 196: ykdfi At-LgklsG lhgqd PPAP_RAT : 3- 10: mr AvpLhlv-G taslt PPAP_RAT : 120- 127: amtnl Aa-LfppeG isiwn PPAX_CAEEL : 322- 328: dqlvy Al-Lvtl-G itdvv PPA_ECOLI : 90- 98: rqrlv AdgLlakkG cpqsg PPA_ECOLI : 165- 171: anvtd Ai-Lsra-G gsiad PPA_ECOLI : 165- 172: anvtd Ai-LsragG siadf N 14: 11.5102 24( 18) L-x(0,2)-A-x-L Occurences: 24(18) AGP_ECOLI : 42- 46: msrhn Lr-ApL anngs PHYA_ASPAW : 323- 327: gyane Li-ArL thspv PHYA_ASPNG : 323- 327: gyane Li-ArL thspv PHYB_ASPAW : 114- 117: eykgd L--AfL ndwty PHYB_ASPAW : 345- 348: nitpi L--AaL gvlip PHYB_ASPAW : 403- 408: yvrlv LneAvL pfndc PHYB_ASPNG : 114- 117: eykgd L--AfL ndwty PHYB_ASPNG : 345- 348: nitpi L--AaL gvlip PHYB_ASPNG : 403- 408: yvrlv LneAvL pfndc PPA1_SCHPO : 418- 422: dgmce Ly-AyL nspvr PPA2_SCHPO : 428- 432: dglce Ls-AyL nssvr PPA3_YEAST : 10- 14: vvysv La-AaL vnagt PPA3_YEAST : 313- 318: svgan LfnAtL kllkq PPA5_YEAST : 10- 14: vvysi La-AsL anagt PPAB_YEAST : 10- 14: avysi La-AsL vnagt PPAC_YEAST : 10- 14: avysi La-AsL vnagt PPAL_HUMAN : 118- 121: saean L--AgL fppng PPAL_MOUSE : 116- 119: saean L--AgL fppne PPAL_RAT : 118- 121: saean L--AgL fppte PPAP_HUMAN : 120- 123: samtn L--AaL fppeg PPAP_RAT : 119- 122: samtn L--AaL fppeg PPAX_CAEEL : 319- 324: sshdq LvyAlL vtlgi PPA_ECOLI : 76- 80: prgge Li-AyL ghyqr PPA_ECOLI : 329- 332: ghdtn L--AnL ggale O 15: 11.5102 29( 18) S-x(2,3)-N-x(0,1)-L Occurences: 29(18) AGP_ECOLI : 38- 42: qvlmm Srh-N-L rapla PHYA_ASPAW : 204- 210: visea SssnNtL dpgtc PHYA_ASPAW : 205- 210: iseas Ssn-NtL dpgtc PHYA_ASPNG : 204- 210: visea SssnNtL dpgtc PHYA_ASPNG : 205- 210: iseas Ssn-NtL dpgtc PHYB_ASPAW : 254- 259: mnlta SdvyN-L mvmas PHYB_ASPNG : 254- 259: mnlta SdvyN-L ivmas PPA1_SCHPO : 103- 109: vpidy SvsgNpL sfvpt PPA1_SCHPO : 240- 244: lnpyf Sny-N-L tnddi PPA1_SCHPO : 309- 314: gayan Sla-NsL rsven PPA2_SCHPO : 106- 112: ipvnf SypeNpL yfvkh PPA2_SCHPO : 198- 204: lpedd SagaNsL amyys PPA2_SCHPO : 248- 252: nkyfd Sgy-N-L tvsdv PPA3_YEAST : 203- 209: vseam SagaNtL sagna PPA3_YEAST : 253- 259: glnlt SkdaNtL fawca PPA3_YEAST : 308- 313: ydmir SvgaN-L fnatl PPA5_YEAST : 203- 209: vseae SagaNtL sacns PPA5_YEAST : 308- 313: ydiik SvgsN-L fnasv PPAB_YEAST : 203- 209: iseae SagaNtL sahhs PPAB_YEAST : 308- 313: ydvvr SvgaN-L fnasv PPAC_YEAST : 203- 209: iseae SagaNtL sahhs PPAC_YEAST : 308- 313: ydvvr SvgaN-L fnasv PPAL_HUMAN : 113- 118: drtlm SaeaN-L aglfp PPAL_MOUSE : 111- 116: drtlm SaeaN-L aglfp PPAL_RAT : 113- 118: drtlm SaeaN-L aglfp PPAP_HUMAN : 115- 120: drtlm SamtN-L aalfp PPAP_RAT : 114- 119: drtlm SamtN-L aalfp PPAX_CAEEL : 71- 76: tpmgm SemnN-L gtifr PPAX_CAEEL : 71- 76: tpmgm Sem-NnL gtifr PPA_ECOLI : 262- 268: gritd ShqwNtL lslhn P 16: 11.5102 33( 18) S-x(4,5)-L-x(1,2)-A Occurences: 33(18) AGP_ECOLI : 313- 321: lvghd SniaslLt-A ldfkp AGP_ECOLI : 313- 321: lvghd Snias-LltA ldfkp PHYA_ASPAW : 448- 456: rctrd Sfvrg-LsfA rsggd PHYA_ASPNG : 448- 456: rctrd Sfvrg-LsfA rsggd PHYB_ASPAW : 136- 145: naett SgpyagLldA ynhgn PHYB_ASPNG : 136- 145: naett SgpyagLldA ynhgn PPA1_SCHPO : 412- 420: gpsnt SdgmceLy-A ylnsp PPA2_SCHPO : 4- 12: mkl SgislwLl-A asivh PPA2_SCHPO : 4- 13: mkl SgislwLlaA sivha PPA2_SCHPO : 304- 313: wggpa SewastLggA yvnnl PPA2_SCHPO : 422- 430: gpsga SdglceLs-A ylnss PPA3_YEAST : 4- 12: mfk SvvysvLa-A alvna PPA3_YEAST : 4- 13: mfk SvvysvLaaA lvnag PPA3_YEAST : 8- 17: ksvvy SvlaaaLvnA gtipl PPA3_YEAST : 203- 211: vseam SagantLs-A gnacp PPA3_YEAST : 253- 261: glnlt SkdantLf-A wcaye PPA3_YEAST : 308- 316: ydmir Svgan-LfnA tlkll PPA5_YEAST : 4- 12: mfk SvvysiLa-A slana PPA5_YEAST : 8- 17: ksvvy SilaasLanA gtipl PPA5_YEAST : 203- 211: vseae SagantLs-A cnscp PPA5_YEAST : 308- 316: ydiik Svgsn-LfnA svkll PPAB_YEAST : 4- 12: mlk SavysiLa-A slvna PPAB_YEAST : 8- 17: ksavy SilaasLvnA gtipl PPAB_YEAST : 203- 211: iseae SagantLs-A hhscp PPAB_YEAST : 308- 316: ydvvr Svgan-LfnA svkll PPAC_YEAST : 4- 12: mlk SavysiLa-A slvna PPAC_YEAST : 8- 17: ksavy SilaasLvnA gtipl PPAC_YEAST : 203- 211: iseae SagantLs-A hhscp PPAC_YEAST : 308- 316: ydvvr Svgan-LfnA svkll PPAL_HUMAN : 284- 292: kllvy SahdttLv-A lqmal PPAL_MOUSE : 282- 290: kllvy SahdttLv-A lqmal PPAL_RAT : 284- 292: kllvy SahdttLv-A lqmal PPAP_HUMAN : 115- 122: drtlm Samtn-La-A lfppe PPAP_RAT : 114- 121: drtlm Samtn-La-A lfppe PPAX_CAEEL : 314- 322: kfyay Sshdq-LvyA llvtl PPA_ECOLI : 223- 232: selkv SadnvsLtgA vslas Q 17: 11.5102 30( 18) G-x(1,2)-L-x(0,1)-T Occurences: 30(18) AGP_ECOLI : 68- 72: ewdvp GgqL-T tkggv AGP_ECOLI : 68- 73: ewdvp GgqLtT kggvl AGP_ECOLI : 69- 72: wdvpg Gq-L-T tkggv AGP_ECOLI : 69- 73: wdvpg Gq-LtT kggvl PHYA_ASPAW : 249- 253: endls GvtL-T dtevt PHYA_ASPNG : 249- 253: endls GvtL-T dtevt PHYB_ASPAW : 248- 252: nsqnp GmnL-T asdvy PHYB_ASPAW : 377- 381: nivpm GghL-T ierls PHYB_ASPAW : 378- 381: ivpmg Gh-L-T ierls PHYB_ASPNG : 248- 252: nsqnp GmnL-T asdvy PHYB_ASPNG : 377- 381: nivpm GghL-T ierls PHYB_ASPNG : 378- 381: ivpmg Gh-L-T ierls PPA1_SCHPO : 374- 378: fvpfa Gn-LiT elfqc PPA2_SCHPO : 249- 253: kyfds GynL-T vsdvr PPA2_SCHPO : 384- 388: fvpfa Gn-LiT elflc PPA3_YEAST : 248- 252: nkenk GlnL-T skdan PPA5_YEAST : 248- 252: nkenk GlnL-T stdas PPAB_YEAST : 248- 252: nkenk GlnL-T ssdan PPAB_YEAST : 290- 295: vrfsy GqdLeT yyqtg PPAC_YEAST : 248- 252: nkenk GlnL-T ssdan PPAC_YEAST : 290- 295: vrfsy GqdLeT yyqtg PPAL_HUMAN : 66- 69: wpqgf Gq-L-T kegml PPAL_HUMAN : 89- 93: rqryh Gf-LnT syhrq PPAL_MOUSE : 17- 21: lqfll GmcL-T vmppi PPAL_MOUSE : 64- 67: wpqgf Gq-L-T kegml PPAL_MOUSE : 87- 91: rqryh Gf-LnT syhrq PPAL_RAT : 66- 69: wpqgf Gq-L-T kegml PPAP_HUMAN : 68- 71: wpqgf Gq-L-T qlgme PPAP_RAT : 67- 70: wpqgf Gq-L-T kwgmg PPAX_CAEEL : 63- 66: ggggl Ge-L-T pmgms PPA_ECOLI : 67- 70: wpvkl Gw-L-T prgge PPA_ECOLI : 312- 317: qkqay GvtLpT svlfi R 18: 11.0102 25( 18) E-x(3,4)-L-x(1,3)-V Occurences: 25(18) AGP_ECOLI : 27- 34: aqtvp Egyq-Lqq-V lmmsr PHYA_ASPAW : 219- 227: tctvf Edse-LadtV eanft PHYA_ASPAW : 417- 424: mqcqa Eqep-Lvr-V lvndr PHYA_ASPNG : 219- 227: tctvf Edse-LadtV eanft PHYA_ASPNG : 417- 424: mqcqa Eqep-Lvr-V lvndr PHYB_ASPAW : 355- 362: vlipn Edlp-Ldr-V afgnp PHYB_ASPNG : 355- 362: vlipn Edlp-Ldr-V afgnp PPA1_SCHPO : 267- 275: lqdys Efck-LfnsV dflnf PPA1_SCHPO : 417- 426: sdgmc ElyayLnspV rvngt PPA2_SCHPO : 137- 145: ssgri Elfd-LgrqV feryy PPA2_SCHPO : 427- 436: sdglc ElsayLnssV rvnst PPA3_YEAST : 325- 331: llkqs Etqd-Lk--V wlsft PPA5_YEAST : 65- 72: lpegc Emkq-Lqm-V grhge PPAB_YEAST : 124- 133: dtknl EmettLansV nvlnp PPAC_YEAST : 124- 133: dtknl EmettLansV nvlnp PPAL_HUMAN : 251- 259: iyqqa Ekar-LqggV llaqi PPAL_HUMAN : 380- 387: gpadt EvivaLa--V cgsil PPAL_MOUSE : 378- 385: dtadt EvivaLa--V cgsil PPAL_RAT : 380- 387: dtadt EvivaLa--V cgsil PPAP_HUMAN : 254- 262: ihkqk Eksr-LqggV lvnei PPAP_HUMAN : 354- 363: pscpl ErfaeLvgpV ipqdw PPAP_RAT : 253- 261: ihkqk Eksr-LqggV lvnei PPAP_RAT : 353- 362: hscpl EkfaeLldpV ipqdw PPAX_CAEEL : 173- 181: fqelq EkwaeLde-V knatv PPA_ECOLI : 25- 33: afaqs EpelkLes-V vivsr PPA_ECOLI : 25- 34: afaqs EpelkLesvV ivsrh S 19: 11.0102 24( 18) L-x(2,3)-G-x(1,3)-S Occurences: 24(18) AGP_ECOLI : 90- 98: ymrew LaeqGmvkS gecpp AGP_ECOLI : 225- 230: gvsgp Lkv-Gn--S lvdaf AGP_ECOLI : 265- 272: kvlsk Lkn-GyqdS lftsp PHYA_ASPAW : 12- 18: llply Lla-Gvt-S glavp PHYA_ASPNG : 12- 18: llply Lls-Gvt-S glavp PHYB_ASPAW : 13- 18: tlaca Lat-Ga--S afsyg PHYB_ASPNG : 13- 18: tlaca Lat-Ga--S afsyg PPA1_SCHPO : 250- 257: tnddi LnlyGic-S yeial PPA1_SCHPO : 401- 409: eevfp LsdcGfgpS ntsdg PPA2_SCHPO : 411- 419: qqvyp LtdcGygpS gasdg PPA3_YEAST : 41- 49: difpf LggaGpyfS fpgdy PPA3_YEAST : 267- 273: wcaye LnarGy--S dvcdi PPA5_YEAST : 41- 49: difpf LggaGpyyS fpgdy PPAB_YEAST : 41- 49: eifpf LggsGpyyS fpgdy PPAC_YEAST : 41- 49: eifpf LggsGpyyS fpgdy PPAL_HUMAN : 39- 46: rfvtl LyrhGdr-S pvkty PPAL_MOUSE : 37- 44: rfvtl LyrhGdr-S pvkty PPAL_RAT : 39- 46: rfvtl LyrhGdr-S pvkay PPAP_HUMAN : 342- 348: hepyp LmlpGc--S pscpl PPAP_HUMAN : 342- 350: hepyp LmlpGcspS cpler PPAP_RAT : 6- 13: mravp LhlvGta-S ltlgf PPAP_RAT : 341- 349: nepyp LtlpGcthS cplek PPAX_CAEEL : 65- 71: gglge LtpmGm--S emnnl PPA_ECOLI : 94- 102: vadgl LakkGcpqS gqvai PPA_ECOLI : 167- 173: vtdai LsraGg--S iadft T 20: 11.0102 30( 18) G-x(0,1)-G-x(2,4)-E Occurences: 30(18) AGP_ECOLI : 75- 79: qlttk G-Gvl--E vymgh PHYA_ASPAW : 316- 322: lgptq GvGyan-E liarl PHYA_ASPAW : 459- 464: sfars G-Gdwa-E csa PHYA_ASPNG : 316- 322: lgptq GvGyan-E liarl PHYA_ASPNG : 459- 464: sfars G-Gdwa-E cfa PHYB_ASPAW : 51- 57: lkhyg GnGpys-E rvsyg PHYB_ASPAW : 172- 178: pffss GyGrvi-E tarkf PHYB_ASPAW : 377- 383: nivpm G-GhltiE rlscq PHYB_ASPNG : 51- 57: lkhyg GnGpys-E rvsyg PHYB_ASPNG : 172- 178: pffss GyGrvi-E tarkf PHYB_ASPNG : 377- 383: nivpm G-GhltiE rlscq PPA1_SCHPO : 173- 179: salwy GyGmfg-E dvhnf PPA2_SCHPO : 300- 305: dyayw G-Gpas-E wastl PPA3_YEAST : 411- 417: etcst GpGfsc-E indfy PPA5_YEAST : 411- 417: etcst GpGfsc-E indfy PPAB_YEAST : 411- 417: etcst GpGfsc-E indfy PPAC_YEAST : 411- 417: etcst GpGfsc-E indfy PPAL_HUMAN : 64- 71: eewpq GfGqltkE gmlqh PPAL_MOUSE : 62- 69: ekwpq GfGqltkE gmlqh PPAL_RAT : 64- 71: ekwpq GfGqltkE gmlqh PPAP_HUMAN : 260- 266: ksrlq G-GvlvnE ilnhm PPAP_RAT : 73- 79: qltkw GmGqhy-E lgsyi PPAP_RAT : 259- 265: ksrlq G-GvlvnE ilknm PPAP_RAT : 322- 327: lyqdn G-Gtfv-E myyrn PPAX_CAEEL : 58- 64: knwtf GgGglg-E ltpmg PPAX_CAEEL : 58- 64: knwtf G-GgglgE ltpmg PPAX_CAEEL : 59- 64: nwtfg GgGlg--E ltpmg PPAX_CAEEL : 59- 64: nwtfg G-Gglg-E ltpmg PPAX_CAEEL : 60- 64: wtfgg G-Glg--E ltpmg PPAX_CAEEL : 276- 282: vstlq G-GpllnE iferg PPA_ECOLI : 333- 337: nlanl G-Gal--E lnwtl PPA_ECOLI : 352- 358: dntpp G-GelvfE rwrrl Number of patterns evaluated by Pratt:4186 Total running time: 8 seconds