------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 11 sequences from file HISOL_DEHYDROGENASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 11 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename HISOL_DEHYDROGENASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: HIS2_NEUCR 863 HIS2_PICPA 842 HIS2_YEAST 799 HISX_AZOBR 128 HISX_BRAOC 469 HISX_ECOLI 433 HISX_HAEIN 427 HISX_LACLA 431 HISX_MYCSM 445 HISX_SALTY 433 HISX_STRCO 155 Pratt run started at Thu Feb 6 19:54:07 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 19.3503 11( 11) G-x(2)-H-x(5)-G-x(4,5)-S-x(0,2)-G 2: 16.6802 11( 11) A-G-x(3)-V-L 3: 16.1802 14( 11) G-x(4)-G-x(3,4)-L-P 4: 15.6802 12( 11) G-x(1,2)-H-x(5)-G-x(4,5)-S 5: 15.6802 11( 11) G-x(3,4)-L-P-x(2,3)-G 6: 15.6802 17( 11) A-x(0,2)-G-x(3)-V-L 7: 15.1802 11( 11) H-x(5)-G-x(4,5)-S-x(0,2)-G 8: 15.1802 14( 11) A-x(4)-L-x(0,1)-A-x(1,3)-A 9: 15.1802 16( 11) G-x(2,4)-G-x(3,4)-L-P 10: 15.1802 16( 11) V-x(0,1)-L-x(1,3)-G-x(2)-A 11: 15.1802 11( 11) G-x(0,2)-D-x(3)-G-x(3,4)-L 12: 15.1802 11( 11) G-x(3,4)-V-L-x(1,3)-G 13: 14.6802 12( 11) P-x(1,3)-G-x(0,2)-D-x(3)-G 14: 12.0102 22( 11) A-x(0,1)-L-x(3)-A 15: 12.0102 18( 11) A-x-G-x(3,4)-V 16: 12.0102 19( 11) A-x(1,2)-G-x(3)-V 17: 12.0102 34( 11) A-x(0,1)-G-x(3)-V 18: 12.0102 14( 11) A-x(0,1)-G-x(4)-G 19: 12.0102 13( 11) A-x-A-x(0,1)-G 20: 12.0102 17( 11) P-A-x(1,2)-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 30.2399 11( 11) A-x(0,1)-G-x(4)-G-x(2)-[AGSTV]-x(4)-[GST]-[ADG]-x(3)-[GV]-x(4)-[LPV]-[ALP]-[CGT] B 2: 27.9329 11( 11) G-[GSTV]-[NQ]-H-x(2)-[GP]-x(2)-G-x(4,5)-S-x(0,2)-G C 3: 27.4480 12( 11) P-x(1,3)-G-x(0,2)-D-x(3)-G-x-[NPS]-x(4)-[PST]-x-[GIL]-x-[ACPT]-x(3)-[AES] D 4: 25.0943 11( 11) A-G-[PS]-x-[DEH]-V-L-[IPV] E 5: 24.5943 12( 11) A-x(0,1)-G-[PS]-x-[DEH]-V-L-[IPV] F 6: 24.5737 13( 11) G-x(3)-[APS]-G-x(3,4)-L-P-[AST]-x-[AG] G 7: 24.1762 11( 11) G-x(3,4)-L-P-x(2,3)-G-x-[AQT]-x(3)-[GS]-x(2)-[GNS] H 8: 23.5035 17( 11) A-x(0,2)-G-[PST]-x-[DEH]-V-L-[IPV] I 9: 22.0849 12( 11) G-x(1,2)-H-x(2)-[GP]-x(2)-G-x(4,5)-S-[GS] J 10: 20.9547 14( 11) G-x(2,4)-G-x(3,4)-L-P-[AST]-x-[AG] K 11: 18.4044 11( 11) H-x(2)-[GP]-x(2)-G-x(4,5)-S-x(0,2)-G L 12: 17.0632 12( 11) A-[AEGST]-x(3)-L-x(0,1)-A-x(1,3)-A M 13: 16.7991 14( 11) V-x(0,1)-L-x(1,3)-G-x(2)-A-x(4)-[ADGSTV] N 14: 15.1803 12( 11) A-x(1,2)-G-x(3)-V-[AL] O 15: 15.1802 11( 11) G-x(0,2)-D-x(3)-G-x(3,4)-L P 16: 15.1802 11( 11) G-x(3,4)-V-L-x(1,3)-G Q 17: 14.6802 12( 11) P-x(1,3)-G-x(0,2)-D-x(3)-G R 18: 14.6721 16( 11) P-A-x(1,2)-A-[GQS] S 19: 14.6292 14( 11) G-x(3)-[APS]-G-x(3,4)-L T 20: 14.1965 11( 11) A-x-A-x(0,1)-G-x-[DEQT] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 30.2399 11( 11) A-x(0,1)-G-x(4)-G-x(2)-[AGSTV]-x(4)-[GST]-[ADG]-x(3)-[GV]-x(4)-[LPV]-[ALP]-[CGT] Occurences: 11(11) HIS2_NEUCR : 553- 580: srpie AvGcyipGgtAvlpsTAlmlGvpamVAG cnkiv HIS2_PICPA : 754- 780: dqvqh A-GsvfvGaySpescGDyssGtnhtLPT ygyar HIS2_YEAST : 706- 732: klvdn A-GsvfvGayTpescGDyssGtnhtLPT ygyar HISX_AZOBR : 66- 93: qlpah AgGqhqqGreGqekaSGrrhVrchiPLC alsvh HISX_BRAOC : 376- 402: glien A-GsvfiGpwTpesvGDyasGtnhvLPT ygyar HISX_ECOLI : 344- 370: dsits A-GsvflGdwSpesaGDyasGtnhvLPT ygyta HISX_HAEIN : 340- 366: pyldn A-GsiflGaySpesmGDyasGtnhvLPT ygytk HISX_LACLA : 346- 372: pkikn A-GsifiGeyTpeplGDymsGsnhvLPT ggtak HISX_MYCSM : 361- 387: grirs A-GaifvGawSpvslGDycaGsnhvLPT agcar HISX_SALTY : 344- 370: daits A-GsvflGdwSpesaGDyasGtnhvLPT ygyta HISX_STRCO : 65- 91: drvkn A-GaifvGpwApvslGDyaaGsnhvLPT ggcac B 2: 27.9329 11( 11) G-[GSTV]-[NQ]-H-x(2)-[GP]-x(2)-G-x(4,5)-S-x(0,2)-G Occurences: 11(11) HIS2_NEUCR : 794- 810: whysa GVNHslPtyGfakqyS--G vnlas HIS2_PICPA : 773- 789: gdyss GTNHtlPtyGyarqyS--G vntat HIS2_YEAST : 725- 741: gdyss GTNHtlPtyGyarqyS--G antat HISX_AZOBR : 67- 82: lpaha GGQHqqGreGqeka-S--G rrhvr HISX_BRAOC : 395- 411: gdyas GTNHvlPtyGyarmyS--G vslds HISX_ECOLI : 363- 381: gdyas GTNHvlPtyGytatcSslG ladfq HISX_HAEIN : 359- 377: gdyas GTNHvlPtyGytktySslG ladfs HISX_LACLA : 365- 381: gdyms GSNHvlPtgGtakfyS--G lgvyn HISX_LACLA : 365- 383: gdyms GSNHvlPtgGtakfySglG vynfi HISX_MYCSM : 380- 396: gdyca GSNHvlPtaGcarhsS--G lsvqt HISX_MYCSM : 380- 396: gdyca GSNHvlPtaGcarh-Ss-G lsvqt HISX_SALTY : 363- 381: gdyas GTNHvlPtyGytatcSslG ladfq HISX_STRCO : 84- 100: gdyaa GSNHvlPtgGcachsS--G lsvqs HISX_STRCO : 84- 100: gdyaa GSNHvlPtgGcach-Ss-G lsvqs C 3: 27.4480 12( 11) P-x(1,3)-G-x(0,2)-D-x(3)-G-x-[NPS]-x(4)-[PST]-x-[GIL]-x-[ACPT]-x(3)-[AES] Occurences: 12(11) HIS2_NEUCR : 16- 40: rrvsv Pp--GlnDikeGlSreevScLgCvffE vkpqt HIS2_PICPA : 764- 788: vgays PescG--DyssGtNhtlpTyGyArqyS gvnta HIS2_YEAST : 716- 740: vgayt PescG--DyssGtNhtlpTyGyArqyS ganta HISX_AZOBR : 7- 31: lvqta Pa--GpiDvliGrPalqrPdIaPrhhA pphra HISX_BRAOC : 386- 410: igpwt PesvG--DyasGtNhvlpTyGyArmyS gvsld HISX_ECOLI : 354- 378: lgdws PesaG--DyasGtNhvlpTyGyTatcS slgla HISX_HAEIN : 350- 374: lgays PesmG--DyasGtNhvlpTyGyTktyS slgla HISX_LACLA : 356- 380: igeyt PeplG--DymsGsNhvlpTgGtAkfyS glgvy HISX_LACLA : 358- 380: eytpe Pl--G--DymsGsNhvlpTgGtAkfyS glgvy HISX_MYCSM : 371- 395: vgaws PvslG--DycaGsNhvlpTaGcArhsS glsvq HISX_SALTY : 354- 378: lgdws PesaG--DyasGtNhvlpTyGyTatcS slgla HISX_STRCO : 75- 99: vgpwa PvslG--DyaaGsNhvlpTgGcAchsS glsvq D 4: 25.0943 11( 11) A-G-[PS]-x-[DEH]-V-L-[IPV] Occurences: 11(11) HIS2_NEUCR : 665- 672: gidmp AGPsEVLV iahkd HIS2_PICPA : 642- 649: sidmp AGPsEVLV iadky HIS2_YEAST : 593- 600: sidmp AGPsEVLV iaded HISX_AZOBR : 8- 15: vqtap AGPiDVLI grpal HISX_BRAOC : 264- 271: sidmp AGPsEVLV iadeh HISX_ECOLI : 233- 240: aidmp AGPsEVLV iadsg HISX_HAEIN : 229- 236: aidmp AGPsEVLV iades HISX_LACLA : 234- 241: didmi AGPsEVLV iadkt HISX_MYCSM : 379- 386: lgdyc AGSnHVLP tagca HISX_SALTY : 233- 240: aidmp AGPsEVLV iadsg HISX_STRCO : 83- 90: lgdya AGSnHVLP tggca E 5: 24.5943 12( 11) A-x(0,1)-G-[PS]-x-[DEH]-V-L-[IPV] Occurences: 12(11) HIS2_NEUCR : 665- 672: gidmp A-GPsEVLV iahkd HIS2_PICPA : 642- 649: sidmp A-GPsEVLV iadky HIS2_YEAST : 593- 600: sidmp A-GPsEVLV iaded HISX_AZOBR : 8- 15: vqtap A-GPiDVLI grpal HISX_BRAOC : 264- 271: sidmp A-GPsEVLV iadeh HISX_ECOLI : 233- 240: aidmp A-GPsEVLV iadsg HISX_HAEIN : 229- 236: aidmp A-GPsEVLV iades HISX_LACLA : 234- 241: didmi A-GPsEVLV iadkt HISX_MYCSM : 379- 386: lgdyc A-GSnHVLP tagca HISX_SALTY : 233- 240: aidmp A-GPsEVLV iadsg HISX_STRCO : 82- 90: slgdy AaGSnHVLP tggca HISX_STRCO : 83- 90: lgdya A-GSnHVLP tggca F 6: 24.5737 13( 11) G-x(3)-[APS]-G-x(3,4)-L-P-[AST]-x-[AG] Occurences: 13(11) HIS2_NEUCR : 555- 569: pieav GcyiPGgtavLPStA lmlgv HIS2_PICPA : 768- 782: spesc GdysSGtnhtLPTyG yarqy HIS2_YEAST : 481- 495: piekv GlyiPGgtaiLPStA lmlgv HIS2_YEAST : 720- 734: tpesc GdysSGtnhtLPTyG yarqy HISX_AZOBR : 53- 66: rtagd GwgfAGlrq-LPAhA ggqhq HISX_BRAOC : 154- 168: sigsv GlyvPGgtavLPStA lmlai HISX_BRAOC : 390- 404: tpesv GdyaSGtnhvLPTyG yarmy HISX_ECOLI : 358- 372: spesa GdyaSGtnhvLPTyG ytatc HISX_HAEIN : 354- 368: spesm GdyaSGtnhvLPTyG ytkty HISX_LACLA : 360- 374: tpepl GdymSGsnhvLPTgG takfy HISX_MYCSM : 375- 389: spvsl GdycAGsnhvLPTaG carhs HISX_SALTY : 358- 372: spesa GdyaSGtnhvLPTyG ytatc HISX_STRCO : 79- 93: apvsl GdyaAGsnhvLPTgG cachs G 7: 24.1762 11( 11) G-x(3,4)-L-P-x(2,3)-G-x-[AQT]-x(3)-[GS]-x(2)-[GNS] Occurences: 11(11) HIS2_NEUCR : 794- 812: whysa GvnhsLPty-GfAkqySgvN lasfv HIS2_PICPA : 773- 791: gdyss GtnhtLPty-GyArqySgvN tatfq HIS2_YEAST : 725- 743: gdyss GtnhtLPty-GyArqySgaN tatfq HISX_AZOBR : 58- 76: gwgfa Glrq-LPahaGgQhqqGreG qekas HISX_BRAOC : 395- 413: gdyas GtnhvLPty-GyArmySgvS ldsfl HISX_ECOLI : 363- 381: gdyas GtnhvLPty-GyTatcSslG ladfq HISX_HAEIN : 359- 377: gdyas GtnhvLPty-GyTktySslG ladfs HISX_LACLA : 365- 383: gdyms GsnhvLPtg-GtAkfySglG vynfi HISX_MYCSM : 380- 398: gdyca GsnhvLPta-GcArhsSglS vqtfl HISX_SALTY : 363- 381: gdyas GtnhvLPty-GyTatcSslG ladfq HISX_STRCO : 84- 102: gdyaa GsnhvLPtg-GcAchsSglS vqsfl H 8: 23.5035 17( 11) A-x(0,2)-G-[PST]-x-[DEH]-V-L-[IPV] Occurences: 17(11) HIS2_NEUCR : 665- 672: gidmp A--GPsEVLV iahkd HIS2_PICPA : 642- 649: sidmp A--GPsEVLV iadky HIS2_YEAST : 593- 600: sidmp A--GPsEVLV iaded HISX_AZOBR : 6- 15: ilvqt ApaGPiDVLI grpal HISX_AZOBR : 8- 15: vqtap A--GPiDVLI grpal HISX_BRAOC : 264- 271: sidmp A--GPsEVLV iadeh HISX_BRAOC : 393- 401: svgdy As-GTnHVLP tygya HISX_ECOLI : 233- 240: aidmp A--GPsEVLV iadsg HISX_ECOLI : 361- 369: sagdy As-GTnHVLP tygyt HISX_HAEIN : 229- 236: aidmp A--GPsEVLV iades HISX_HAEIN : 357- 365: smgdy As-GTnHVLP tygyt HISX_LACLA : 234- 241: didmi A--GPsEVLV iadkt HISX_MYCSM : 379- 386: lgdyc A--GSnHVLP tagca HISX_SALTY : 233- 240: aidmp A--GPsEVLV iadsg HISX_SALTY : 361- 369: sagdy As-GTnHVLP tygyt HISX_STRCO : 82- 90: slgdy Aa-GSnHVLP tggca HISX_STRCO : 83- 90: lgdya A--GSnHVLP tggca I 9: 22.0849 12( 11) G-x(1,2)-H-x(2)-[GP]-x(2)-G-x(4,5)-S-[GS] Occurences: 12(11) HIS2_NEUCR : 794- 810: whysa GvnHslPtyGfakqySG vnlas HIS2_PICPA : 773- 789: gdyss GtnHtlPtyGyarqySG vntat HIS2_YEAST : 725- 741: gdyss GtnHtlPtyGyarqySG antat HISX_AZOBR : 67- 82: lpaha GgqHqqGreGqeka-SG rrhvr HISX_AZOBR : 68- 82: pahag Gq-HqqGreGqeka-SG rrhvr HISX_BRAOC : 395- 411: gdyas GtnHvlPtyGyarmySG vslds HISX_ECOLI : 363- 379: gdyas GtnHvlPtyGytatcSS lglad HISX_HAEIN : 359- 375: gdyas GtnHvlPtyGytktySS lglad HISX_LACLA : 365- 381: gdyms GsnHvlPtgGtakfySG lgvyn HISX_MYCSM : 380- 395: gdyca GsnHvlPtaGcarh-SS glsvq HISX_MYCSM : 380- 396: gdyca GsnHvlPtaGcarhsSG lsvqt HISX_SALTY : 363- 379: gdyas GtnHvlPtyGytatcSS lglad HISX_STRCO : 84- 99: gdyaa GsnHvlPtgGcach-SS glsvq HISX_STRCO : 84- 100: gdyaa GsnHvlPtgGcachsSG lsvqs J 10: 20.9547 14( 11) G-x(2,4)-G-x(3,4)-L-P-[AST]-x-[AG] Occurences: 14(11) HIS2_NEUCR : 555- 569: pieav GcyipGgtavLPStA lmlgv HIS2_PICPA : 768- 782: spesc GdyssGtnhtLPTyG yarqy HIS2_YEAST : 481- 495: piekv GlyipGgtaiLPStA lmlgv HIS2_YEAST : 720- 734: tpesc GdyssGtnhtLPTyG yarqy HISX_AZOBR : 53- 66: rtagd GwgfaGlrq-LPAhA ggqhq HISX_AZOBR : 55- 66: agdgw Gfa--Glrq-LPAhA ggqhq HISX_BRAOC : 154- 168: sigsv GlyvpGgtavLPStA lmlai HISX_BRAOC : 390- 404: tpesv GdyasGtnhvLPTyG yarmy HISX_ECOLI : 358- 372: spesa GdyasGtnhvLPTyG ytatc HISX_HAEIN : 354- 368: spesm GdyasGtnhvLPTyG ytkty HISX_LACLA : 360- 374: tpepl GdymsGsnhvLPTgG takfy HISX_MYCSM : 375- 389: spvsl GdycaGsnhvLPTaG carhs HISX_SALTY : 358- 372: spesa GdyasGtnhvLPTyG ytatc HISX_STRCO : 79- 93: apvsl GdyaaGsnhvLPTgG cachs K 11: 18.4044 11( 11) H-x(2)-[GP]-x(2)-G-x(4,5)-S-x(0,2)-G Occurences: 11(11) HIS2_NEUCR : 797- 810: sagvn HslPtyGfakqyS--G vnlas HIS2_PICPA : 776- 789: ssgtn HtlPtyGyarqyS--G vntat HIS2_YEAST : 728- 741: ssgtn HtlPtyGyarqyS--G antat HISX_AZOBR : 70- 82: haggq HqqGreGqeka-S--G rrhvr HISX_BRAOC : 398- 411: asgtn HvlPtyGyarmyS--G vslds HISX_ECOLI : 366- 381: asgtn HvlPtyGytatcSslG ladfq HISX_HAEIN : 362- 377: asgtn HvlPtyGytktySslG ladfs HISX_LACLA : 368- 381: msgsn HvlPtgGtakfyS--G lgvyn HISX_LACLA : 368- 383: msgsn HvlPtgGtakfySglG vynfi HISX_MYCSM : 383- 396: cagsn HvlPtaGcarhsS--G lsvqt HISX_MYCSM : 383- 396: cagsn HvlPtaGcarh-Ss-G lsvqt HISX_SALTY : 366- 381: asgtn HvlPtyGytatcSslG ladfq HISX_STRCO : 87- 100: aagsn HvlPtgGcachsS--G lsvqs HISX_STRCO : 87- 100: aagsn HvlPtgGcach-Ss-G lsvqs L 12: 17.0632 12( 11) A-[AEGST]-x(3)-L-x(0,1)-A-x(1,3)-A Occurences: 12(11) HIS2_NEUCR : 609- 618: ahkvg AEsivL-Agg-A qavaa HIS2_PICPA : 820- 831: avmdl AAvegLdAhrnA vkvrm HIS2_YEAST : 536- 545: aekvg ASkivL-Agg-A qavaa HISX_AZOBR : 57- 66: dgwgf AGlrqLpAh--A ggqhq HISX_BRAOC : 442- 453: yvatm AEiegLdAhkrA vtlrl HISX_ECOLI : 410- 421: tietl AAaerLtAhknA vtlrv HISX_HAEIN : 267- 277: qvilv ATcetL-AketA laier HISX_HAEIN : 406- 417: tvevm AEaeqLaAhkmA vsvrl HISX_LACLA : 260- 268: dlmaq AEhdkL-As--A ilvtt HISX_MYCSM : 294- 304: etlae ATdreL-AnqlA ttkhv HISX_SALTY : 410- 421: tietl AAaerLtAhknA vtlrv HISX_STRCO : 131- 141: hvvtl AEaedLpAhg-A aikar HISX_STRCO : 131- 142: hvvtl AEaedLpAhgaA ikarf M 13: 16.7991 14( 11) V-x(0,1)-L-x(1,3)-G-x(2)-A-x(4)-[ADGSTV] Occurences: 14(11) HIS2_NEUCR : 613- 625: gaesi V-Lag-GaqAvaamV rpesi HIS2_PICPA : 530- 544: rpiek VgLyipGgtAilpsT slmlg HIS2_PICPA : 589- 601: gakci V-Lag-GaqAvaamA ygtet HIS2_YEAST : 480- 494: rpiek VgLyipGgtAilpsT almlg HIS2_YEAST : 540- 552: gaski V-Lag-GaqAvaamA ygtet HISX_AZOBR : 13- 24: agpid V-Li--GrpAlqrpD iaprh HISX_BRAOC : 153- 167: rsigs VgLyvpGgtAvlpsT almla HISX_ECOLI : 126- 140: rpvas VgLyipGgsAplfsT vlmla HISX_HAEIN : 124- 138: rpisc VgLyipGgsAplfsT vlmla HISX_LACLA : 126- 140: rpler VaLyvpGgtAaypsT vimna HISX_LACLA : 369- 381: sgsnh V-Lpt-GgtAkfysG lgvyn HISX_MYCSM : 133- 147: vpver VgLyvpGgnAvypsS vvmnv HISX_SALTY : 126- 140: rpvss VgLyipGgsAplfsT vlmla HISX_STRCO : 88- 100: agsnh V-Lpt-GgcAchssG lsvqs N 14: 15.1803 12( 11) A-x(1,2)-G-x(3)-V-[AL] Occurences: 12(11) HIS2_NEUCR : 615- 622: esivl Ag-GaqaVA amvrp HIS2_PICPA : 591- 598: kcivl Ag-GaqaVA amayg HIS2_YEAST : 542- 549: skivl Ag-GaqaVA amayg HISX_AZOBR : 6- 14: ilvqt ApaGpidVL igrpa HISX_BRAOC : 393- 400: svgdy As-GtnhVL ptygy HISX_ECOLI : 361- 368: sagdy As-GtnhVL ptygy HISX_HAEIN : 191- 198: avfam Aq-GtesVA kvdki HISX_HAEIN : 357- 364: smgdy As-GtnhVL ptygy HISX_LACLA : 190- 197: ykvgg Aq-GvaaVA ygtes HISX_MYCSM : 195- 203: vdevw AvgGaqaVA llayg HISX_SALTY : 361- 368: sagdy As-GtnhVL ptygy HISX_STRCO : 82- 89: slgdy Aa-GsnhVL ptggc O 15: 15.1802 11( 11) G-x(0,2)-D-x(3)-G-x(3,4)-L Occurences: 11(11) HIS2_NEUCR : 660- 671: tnaav Gi-DmpaGpsevL viahk HIS2_PICPA : 768- 778: spesc G--DyssGtnhtL ptygy HIS2_YEAST : 720- 730: tpesc G--DyssGtnhtL ptygy HISX_AZOBR : 9- 20: qtapa GpiDvliGrpa-L qrpdi HISX_BRAOC : 390- 400: tpesv G--DyasGtnhvL ptygy HISX_ECOLI : 358- 368: spesa G--DyasGtnhvL ptygy HISX_HAEIN : 354- 364: spesm G--DyasGtnhvL ptygy HISX_LACLA : 360- 370: tpepl G--DymsGsnhvL ptggt HISX_MYCSM : 375- 385: spvsl G--DycaGsnhvL ptagc HISX_SALTY : 358- 368: spesa G--DyasGtnhvL ptygy HISX_STRCO : 79- 89: apvsl G--DyaaGsnhvL ptggc P 16: 15.1802 11( 11) G-x(3,4)-V-L-x(1,3)-G Occurences: 11(11) HIS2_NEUCR : 608- 616: vahkv GaesiVLa--G gaqav HIS2_NEUCR : 608- 617: vahkv GaesiVLag-G aqava HIS2_PICPA : 584- 592: vahkv GakciVLa--G gaqav HIS2_PICPA : 584- 593: vahkv GakciVLag-G aqava HIS2_YEAST : 535- 543: vaekv GaskiVLa--G gaqav HIS2_YEAST : 535- 544: vaekv GaskiVLag-G aqava HISX_AZOBR : 9- 16: qtapa Gpid-VLi--G rpalq HISX_BRAOC : 395- 404: gdyas Gtnh-VLptyG yarmy HISX_ECOLI : 363- 372: gdyas Gtnh-VLptyG ytatc HISX_HAEIN : 359- 368: gdyas Gtnh-VLptyG ytkty HISX_LACLA : 365- 373: gdyms Gsnh-VLpt-G gtakf HISX_LACLA : 365- 374: gdyms Gsnh-VLptgG takfy HISX_MYCSM : 380- 389: gdyca Gsnh-VLptaG carhs HISX_SALTY : 363- 372: gdyas Gtnh-VLptyG ytatc HISX_STRCO : 84- 92: gdyaa Gsnh-VLpt-G gcach HISX_STRCO : 84- 93: gdyaa Gsnh-VLptgG cachs Q 17: 14.6802 12( 11) P-x(1,3)-G-x(0,2)-D-x(3)-G Occurences: 12(11) HIS2_NEUCR : 16- 25: rrvsv Pp--GlnDikeG lsree HIS2_PICPA : 764- 773: vgays PescG--DyssG tnhtl HIS2_YEAST : 716- 725: vgayt PescG--DyssG tnhtl HISX_AZOBR : 7- 16: lvqta Pa--GpiDvliG rpalq HISX_BRAOC : 386- 395: igpwt PesvG--DyasG tnhvl HISX_ECOLI : 354- 363: lgdws PesaG--DyasG tnhvl HISX_HAEIN : 350- 359: lgays PesmG--DyasG tnhvl HISX_LACLA : 356- 365: igeyt PeplG--DymsG snhvl HISX_LACLA : 358- 365: eytpe Pl--G--DymsG snhvl HISX_MYCSM : 371- 380: vgaws PvslG--DycaG snhvl HISX_SALTY : 354- 363: lgdws PesaG--DyasG tnhvl HISX_STRCO : 75- 84: vgpwa PvslG--DyaaG snhvl R 18: 14.6721 16( 11) P-A-x(1,2)-A-[GQS] Occurences: 16(11) HIS2_NEUCR : 575- 580: lmlgv PAmvAG cnkiv HIS2_NEUCR : 680- 685: hkdan PAfvAS dllsr HIS2_PICPA : 7- 11: tfpll PAy-AS vaefd HIS2_PICPA : 111- 115: kvasl PAn-AS iavpf HIS2_PICPA : 551- 556: lmlgv PAkvAG ckeiv HIS2_YEAST : 501- 506: lmlgv PAqvAQ ckeiv HISX_AZOBR : 63- 67: glrql PAh-AG gqhqq HISX_BRAOC : 174- 179: lmlai PAqiAG cktvv HISX_ECOLI : 23- 28: qllmr PAisAS esitr HISX_ECOLI : 147- 152: lmlat PAriAG ckkvv HISX_HAEIN : 145- 150: lmlai PAkiAG ckkiv HISX_LACLA : 147- 152: imnav PAllAG vkeii HISX_MYCSM : 154- 159: vmnvv PAqtAG vdsmv HISX_SALTY : 23- 28: alltr PAisAS dsitr HISX_SALTY : 147- 152: lmlat PAriAG cqkvv HISX_STRCO : 18- 22: edrir PAl-AG rqsai S 19: 14.6292 14( 11) G-x(3)-[APS]-G-x(3,4)-L Occurences: 14(11) HIS2_NEUCR : 555- 565: pieav GcyiPGgtavL pstal HIS2_PICPA : 531- 541: piekv GlyiPGgtaiL pstsl HIS2_PICPA : 768- 778: spesc GdysSGtnhtL ptygy HIS2_YEAST : 481- 491: piekv GlyiPGgtaiL pstal HIS2_YEAST : 720- 730: tpesc GdysSGtnhtL ptygy HISX_AZOBR : 53- 62: rtagd GwgfAGlrq-L pahag HISX_BRAOC : 154- 164: sigsv GlyvPGgtavL pstal HISX_BRAOC : 390- 400: tpesv GdyaSGtnhvL ptygy HISX_ECOLI : 358- 368: spesa GdyaSGtnhvL ptygy HISX_HAEIN : 354- 364: spesm GdyaSGtnhvL ptygy HISX_LACLA : 360- 370: tpepl GdymSGsnhvL ptggt HISX_MYCSM : 375- 385: spvsl GdycAGsnhvL ptagc HISX_SALTY : 358- 368: spesa GdyaSGtnhvL ptygy HISX_STRCO : 79- 89: apvsl GdyaAGsnhvL ptggc T 20: 14.1965 11( 11) A-x-A-x(0,1)-G-x-[DEQT] Occurences: 11(11) HIS2_NEUCR : 364- 370: faltr AvAaGvT ladie HIS2_PICPA : 599- 605: aqava AmAyGtE tvpkc HIS2_YEAST : 550- 556: aqava AmAyGtE tipkv HISX_AZOBR : 64- 69: lrqlp AhA-GgQ hqqgr HISX_BRAOC : 222- 228: aqaia AmAwGtD scpkv HISX_ECOLI : 191- 197: aqaia AlAfGtE svpkv HISX_HAEIN : 189- 195: aqavf AmAqGtE svakv HISX_LACLA : 195- 201: aqgva AvAyGtE sipkv HISX_MYCSM : 246- 251: qvgid AeA-GpT eiail HISX_SALTY : 191- 197: aqaia AlAfGsE svpkv HISX_STRCO : 19- 24: drirp AlA-GrQ saivl Number of patterns evaluated by Pratt:2179 Total running time: 3 seconds