------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 16 sequences from file HEXOKINASES PATTERN CONSERVATION: CM: min Nr of Seqs to Match 16 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename HEXOKINASES.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: HXK1_BOVIN 918 HXK1_HUMAN 917 HXK1_MOUSE 918 HXK1_RAT 918 HXK2_RAT 917 HXK3_RAT 924 HXKA_YEAST 485 HXKB_YEAST 486 HXKG_YEAST 500 HXKH_HUMAN 466 HXKH_RAT 465 HXKP_HUMAN 465 HXKP_RAT 465 HXK_KLULA 485 HXK_PLAFA 493 HXK_SCHPO 484 Pratt run started at Thu Feb 6 19:53:44 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 44.8706 17( 16) P-x-G-x-E-x-G-x(5)-D-x-G-G-T-N-x-R-x(1,3)-V 2: 40.7005 17( 16) G-x-E-x-G-x(5)-D-x-G-G-T-N-x-R-x(1,3)-V 3: 36.0305 17( 16) E-x(0,1)-G-x(5)-D-x-G-G-T-N-x-R-x(1,3)-V 4: 32.3604 17( 16) G-x(5)-D-x-G-G-T-N-x-R-x(1,3)-V 5: 28.6904 21( 16) G-x-I-x-G-T-G-x-N-x(2,3)-Y 6: 28.1904 17( 16) D-x-G-G-T-N-x-R-x(1,3)-V 7: 25.0203 19( 16) G-S-G-x-G-A-A 8: 25.0203 18( 16) L-x(2)-W-T-K-G-F 9: 25.0203 21( 16) G-F-T-F-S-x-P 10: 24.5203 21( 16) I-x-G-T-G-x-N-x(2,3)-Y 11: 24.5203 24( 16) L-x(1,2)-W-T-K-G-F 12: 24.0203 17( 16) G-G-T-N-x-R-x(1,3)-V 13: 20.8503 19( 16) S-G-x-G-A-A 14: 20.8503 18( 16) W-T-K-G-F 15: 20.8503 21( 16) F-T-F-S-x-P 16: 20.3503 21( 16) G-T-G-x-N-x(2,3)-Y 17: 19.8503 17( 16) G-T-N-x-R-x(1,3)-V 18: 16.6802 21( 16) G-x-G-A-A 19: 16.6802 21( 16) E-x(4)-G-x(3)-G-x(3)-R 20: 16.6802 18( 16) T-K-G-F Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 66.2342 16( 16) P-[DENT]-G-x-E-x-G-[DNSTV]-x(2)-[AS]-[AIL]-D-[FL]-G-G-T-N-[FL]-R-x(1,3)-V-x-[AILV]-x(2)-[DGN] B 2: 64.9613 17( 16) G-F-T-F-S-[FY]-P-[ACV]-x(4)-[IL]-[DN]-x-[AGS]-x-L-x(2)-W-T-K-G-F C 3: 60.7912 17( 16) F-T-F-S-[FY]-P-[ACV]-x(4)-[IL]-[DN]-x-[AGS]-x-L-x(2)-W-T-K-G-F D 4: 59.8814 16( 16) G-x-E-x-G-[DNSTV]-x(2)-[AS]-[AIL]-D-[FL]-G-G-T-N-[FL]-R-x(1,3)-V-x-[AILV]-x(2)-[DGN] E 5: 55.2113 16( 16) E-x(0,1)-G-[DNSTV]-x(2)-[AS]-[AIL]-D-[FL]-G-G-T-N-[FL]-R-x(1,3)-V-x-[AILV]-x(2)-[DGN] F 6: 51.5413 16( 16) G-[DNSTV]-x(2)-[AS]-[AIL]-D-[FL]-G-G-T-N-[FL]-R-x(1,3)-V-x-[AILV]-x(2)-[DGN] G 7: 45.2912 20( 16) E-x(3)-[AGS]-G-x-[FY]-[LM]-G-[DE]-[ILV]-[LMV]-R-x(2)-[LM]-[ILMV]-x-[FLMV]-x(3)-[AEGN] H 8: 39.6414 17( 16) D-[FL]-G-G-T-N-[FL]-R-x(1,3)-V-x-[AILV]-x(2)-[DGN] I 9: 33.2030 19( 16) G-S-G-x-G-A-A-[ILMV]-x-[AST]-x-[LV] J 10: 33.1648 21( 16) G-x-I-[FILV]-G-T-G-[CSTV]-N-x(2,3)-Y K 11: 32.2033 17( 16) G-G-T-N-[FL]-R-x(1,3)-V-x-[AILV]-x(2)-[DGN] L 12: 29.0330 19( 16) S-G-x-G-A-A-[ILMV]-x-[AST]-x-[LV] M 13: 28.9948 21( 16) I-[FILV]-G-T-G-[CSTV]-N-x(2,3)-Y N 14: 28.0333 17( 16) G-T-N-[FL]-R-x(1,3)-V-x-[AILV]-x(2)-[DGN] O 15: 27.2437 17( 16) L-x(2)-W-T-K-G-F-[DEKR] P 16: 26.7437 22( 16) L-x(1,2)-W-T-K-G-F-[DEKR] Q 17: 24.8629 21( 16) G-x-G-A-A-[ILMV]-x-[AST]-x-[LV] R 18: 23.0736 17( 16) W-T-K-G-F-[DEKR] S 19: 22.5683 21( 16) G-T-G-[CSTV]-N-x(2,3)-Y T 20: 18.9036 17( 16) T-K-G-F-[DEKR] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 66.2342 16( 16) P-[DENT]-G-x-E-x-G-[DNSTV]-x(2)-[AS]-[AIL]-D-[FL]-G-G-T-N-[FL]-R-x(1,3)-V-x-[AILV]-x(2)-[DGN] Occurences: 16(16) HXK1_BOVIN : 520- 548: flrsi PDGtEdGDflALDLGGTNFRvllVkIrsG kkstv HXK1_HUMAN : 520- 548: fvrrt PDGtEnGDflALDLGGTNFRvllVkIrsG kkrtv HXK1_MOUSE : 520- 548: yvrsi PDGtEhGDflALDLGGTNFRvllVkIrsG kkrtv HXK1_RAT : 520- 548: fvrsi PDGtEhGDflALDLGGTNFRvllVkIrsG kkrtv HXK2_RAT : 520- 548: yvcat PDGtEkGDflALDLGGTNFRvllVrVrnG krrgv HXK3_RAT : 530- 558: yvrat PDGsErGDflALDLGGTNFRvllVrVaeG svqit HXKA_YEAST : 74- 102: wvmef PTGkEsGNylAIDLGGTNLRvvlVkLsgN htfdt HXKB_YEAST : 74- 100: wvmdf PTGkEsGDflAIDLGGTNLRv--VlVklG gdrtf HXKB_YEAST : 74- 102: wvmdf PTGkEsGDflAIDLGGTNLRvvlVkLggD rtfdt HXKG_YEAST : 73- 101: fvtgs PNGtErGVllAADLGGTNFRicsVnLhgD htfsm HXKH_HUMAN : 67- 95: yvrst PEGsEvGDflSLDLGGTNFRvmlVkVgeG eegqw HXKH_RAT : 66- 94: yvrst PEGsEvGDflSLDLGGTNFRvmlVkVgeG eagqw HXKP_HUMAN : 66- 94: yvrst PEGsEvGDflSLDLGGTNFRvmlVkVgeG eegqw HXKP_RAT : 66- 94: yvrst PEGsEvGDflSLDLGGTNFRvmlVkVgeG eagqw HXK_KLULA : 74- 100: wvvey PTGkEtGDflALDLGGTNLRv--VlVklG gnhdf HXK_KLULA : 74- 102: wvvey PTGkEtGDflALDLGGTNLRvvlVkLggN hdfdt HXK_PLAFA : 90- 116: ciani PTGqEkGTyyAIDFGGTNFRa--VrAslD gkgki HXK_SCHPO : 78- 106: wiigt PDGnEhGSylALDLGGTNLRvcaVeVqgN gkfdi B 2: 64.9613 17( 16) G-F-T-F-S-[FY]-P-[ACV]-x(4)-[IL]-[DN]-x-[AGS]-x-L-x(2)-W-T-K-G-F Occurences: 17(16) HXK1_BOVIN : 599- 623: prmpl GFTFSFPCqqtsLDaGiLitWTKGF katdc HXK1_HUMAN : 599- 623: prmpl GFTFSFPCqqtsLDaGiLitWTKGF katdc HXK1_MOUSE : 599- 623: prmpl GFTFSFPCkqtsLDcGiLitWTKGF katdc HXK1_RAT : 599- 623: prmpl GFTFSFPChqtnLDcGiLisWTKGF katdc HXK2_RAT : 151- 175: kklpl GFTFSFPChqtkLDeSfLvsWTKGF kssgv HXK2_RAT : 599- 623: vslpl GFTFSFPCqqnsLDqSiLlkWTKGF kasgc HXK3_RAT : 606- 630: qslpl GFTFSFPCkqlgLDqGiLlnWTKGF nasgc HXKA_YEAST : 154- 178: dtlpl GFTFSYPAsqnkINeGiLqrWTKGF dipnv HXKB_YEAST : 154- 178: epipl GFTFSFPAsqnkINeGiLqrWTKGF dipni HXKG_YEAST : 160- 184: kpmkl GFTFSYPVdqtsLNsGtLirWTKGF riadt HXKH_HUMAN : 148- 172: kklpl GFTFSFPVrhedIDkGiLlnWTKGF kasga HXKH_RAT : 147- 171: kklpl GFTFSFPVrhedLDkGiLlnWTKGF kasga HXKP_HUMAN : 147- 171: kklpl GFTFSFPVrhedIDkGiLlnWTKGF kasga HXKP_RAT : 147- 171: kklpl GFTFSFPVrhedLDkGiLlnWTKGF kasga HXK_KLULA : 153- 177: eplpl GFTFSYPAsqkkINsGvLqrWTKGF diegv HXK_PLAFA : 179- 203: evksv GFTFSFPCtspsINcSiLidWTKGF etgra HXK_SCHPO : 156- 180: qnlei GFTFSYPCvqrsINdAsLvaWTKGF didgv C 3: 60.7912 17( 16) F-T-F-S-[FY]-P-[ACV]-x(4)-[IL]-[DN]-x-[AGS]-x-L-x(2)-W-T-K-G-F Occurences: 17(16) HXK1_BOVIN : 600- 623: rmplg FTFSFPCqqtsLDaGiLitWTKGF katdc HXK1_HUMAN : 600- 623: rmplg FTFSFPCqqtsLDaGiLitWTKGF katdc HXK1_MOUSE : 600- 623: rmplg FTFSFPCkqtsLDcGiLitWTKGF katdc HXK1_RAT : 600- 623: rmplg FTFSFPChqtnLDcGiLisWTKGF katdc HXK2_RAT : 152- 175: klplg FTFSFPChqtkLDeSfLvsWTKGF kssgv HXK2_RAT : 600- 623: slplg FTFSFPCqqnsLDqSiLlkWTKGF kasgc HXK3_RAT : 607- 630: slplg FTFSFPCkqlgLDqGiLlnWTKGF nasgc HXKA_YEAST : 155- 178: tlplg FTFSYPAsqnkINeGiLqrWTKGF dipnv HXKB_YEAST : 155- 178: piplg FTFSFPAsqnkINeGiLqrWTKGF dipni HXKG_YEAST : 161- 184: pmklg FTFSYPVdqtsLNsGtLirWTKGF riadt HXKH_HUMAN : 149- 172: klplg FTFSFPVrhedIDkGiLlnWTKGF kasga HXKH_RAT : 148- 171: klplg FTFSFPVrhedLDkGiLlnWTKGF kasga HXKP_HUMAN : 148- 171: klplg FTFSFPVrhedIDkGiLlnWTKGF kasga HXKP_RAT : 148- 171: klplg FTFSFPVrhedLDkGiLlnWTKGF kasga HXK_KLULA : 154- 177: plplg FTFSYPAsqkkINsGvLqrWTKGF diegv HXK_PLAFA : 180- 203: vksvg FTFSFPCtspsINcSiLidWTKGF etgra HXK_SCHPO : 157- 180: nleig FTFSYPCvqrsINdAsLvaWTKGF didgv D 4: 59.8814 16( 16) G-x-E-x-G-[DNSTV]-x(2)-[AS]-[AIL]-D-[FL]-G-G-T-N-[FL]-R-x(1,3)-V-x-[AILV]-x(2)-[DGN] Occurences: 16(16) HXK1_BOVIN : 522- 548: rsipd GtEdGDflALDLGGTNFRvllVkIrsG kkstv HXK1_HUMAN : 522- 548: rrtpd GtEnGDflALDLGGTNFRvllVkIrsG kkrtv HXK1_MOUSE : 522- 548: rsipd GtEhGDflALDLGGTNFRvllVkIrsG kkrtv HXK1_RAT : 522- 548: rsipd GtEhGDflALDLGGTNFRvllVkIrsG kkrtv HXK2_RAT : 522- 548: catpd GtEkGDflALDLGGTNFRvllVrVrnG krrgv HXK3_RAT : 532- 558: ratpd GsErGDflALDLGGTNFRvllVrVaeG svqit HXKA_YEAST : 76- 102: mefpt GkEsGNylAIDLGGTNLRvvlVkLsgN htfdt HXKB_YEAST : 76- 100: mdfpt GkEsGDflAIDLGGTNLRv--VlVklG gdrtf HXKB_YEAST : 76- 102: mdfpt GkEsGDflAIDLGGTNLRvvlVkLggD rtfdt HXKG_YEAST : 75- 101: tgspn GtErGVllAADLGGTNFRicsVnLhgD htfsm HXKH_HUMAN : 69- 95: rstpe GsEvGDflSLDLGGTNFRvmlVkVgeG eegqw HXKH_RAT : 68- 94: rstpe GsEvGDflSLDLGGTNFRvmlVkVgeG eagqw HXKP_HUMAN : 68- 94: rstpe GsEvGDflSLDLGGTNFRvmlVkVgeG eegqw HXKP_RAT : 68- 94: rstpe GsEvGDflSLDLGGTNFRvmlVkVgeG eagqw HXK_KLULA : 76- 100: veypt GkEtGDflALDLGGTNLRv--VlVklG gnhdf HXK_KLULA : 76- 102: veypt GkEtGDflALDLGGTNLRvvlVkLggN hdfdt HXK_PLAFA : 92- 116: anipt GqEkGTyyAIDFGGTNFRa--VrAslD gkgki HXK_SCHPO : 80- 106: igtpd GnEhGSylALDLGGTNLRvcaVeVqgN gkfdi E 5: 55.2113 16( 16) E-x(0,1)-G-[DNSTV]-x(2)-[AS]-[AIL]-D-[FL]-G-G-T-N-[FL]-R-x(1,3)-V-x-[AILV]-x(2)-[DGN] Occurences: 16(16) HXK1_BOVIN : 524- 548: ipdgt EdGDflALDLGGTNFRvllVkIrsG kkstv HXK1_HUMAN : 524- 548: tpdgt EnGDflALDLGGTNFRvllVkIrsG kkrtv HXK1_MOUSE : 524- 548: ipdgt EhGDflALDLGGTNFRvllVkIrsG kkrtv HXK1_RAT : 524- 548: ipdgt EhGDflALDLGGTNFRvllVkIrsG kkrtv HXK2_RAT : 524- 548: tpdgt EkGDflALDLGGTNFRvllVrVrnG krrgv HXK3_RAT : 534- 558: tpdgs ErGDflALDLGGTNFRvllVrVaeG svqit HXKA_YEAST : 78- 102: fptgk EsGNylAIDLGGTNLRvvlVkLsgN htfdt HXKB_YEAST : 78- 100: fptgk EsGDflAIDLGGTNLRv--VlVklG gdrtf HXKB_YEAST : 78- 102: fptgk EsGDflAIDLGGTNLRvvlVkLggD rtfdt HXKG_YEAST : 77- 101: spngt ErGVllAADLGGTNFRicsVnLhgD htfsm HXKH_HUMAN : 71- 95: tpegs EvGDflSLDLGGTNFRvmlVkVgeG eegqw HXKH_RAT : 70- 94: tpegs EvGDflSLDLGGTNFRvmlVkVgeG eagqw HXKP_HUMAN : 70- 94: tpegs EvGDflSLDLGGTNFRvmlVkVgeG eegqw HXKP_RAT : 70- 94: tpegs EvGDflSLDLGGTNFRvmlVkVgeG eagqw HXK_KLULA : 78- 100: yptgk EtGDflALDLGGTNLRv--VlVklG gnhdf HXK_KLULA : 78- 102: yptgk EtGDflALDLGGTNLRvvlVkLggN hdfdt HXK_PLAFA : 94- 116: iptgq EkGTyyAIDFGGTNFRa--VrAslD gkgki HXK_SCHPO : 82- 106: tpdgn EhGSylALDLGGTNLRvcaVeVqgN gkfdi F 6: 51.5413 16( 16) G-[DNSTV]-x(2)-[AS]-[AIL]-D-[FL]-G-G-T-N-[FL]-R-x(1,3)-V-x-[AILV]-x(2)-[DGN] Occurences: 16(16) HXK1_BOVIN : 526- 548: dgted GDflALDLGGTNFRvllVkIrsG kkstv HXK1_HUMAN : 526- 548: dgten GDflALDLGGTNFRvllVkIrsG kkrtv HXK1_MOUSE : 526- 548: dgteh GDflALDLGGTNFRvllVkIrsG kkrtv HXK1_RAT : 526- 548: dgteh GDflALDLGGTNFRvllVkIrsG kkrtv HXK2_RAT : 526- 548: dgtek GDflALDLGGTNFRvllVrVrnG krrgv HXK3_RAT : 536- 558: dgser GDflALDLGGTNFRvllVrVaeG svqit HXKA_YEAST : 80- 102: tgkes GNylAIDLGGTNLRvvlVkLsgN htfdt HXKB_YEAST : 80- 100: tgkes GDflAIDLGGTNLRv--VlVklG gdrtf HXKB_YEAST : 80- 102: tgkes GDflAIDLGGTNLRvvlVkLggD rtfdt HXKG_YEAST : 79- 101: ngter GVllAADLGGTNFRicsVnLhgD htfsm HXKH_HUMAN : 73- 95: egsev GDflSLDLGGTNFRvmlVkVgeG eegqw HXKH_RAT : 72- 94: egsev GDflSLDLGGTNFRvmlVkVgeG eagqw HXKP_HUMAN : 72- 94: egsev GDflSLDLGGTNFRvmlVkVgeG eegqw HXKP_RAT : 72- 94: egsev GDflSLDLGGTNFRvmlVkVgeG eagqw HXK_KLULA : 80- 100: tgket GDflALDLGGTNLRv--VlVklG gnhdf HXK_KLULA : 80- 102: tgket GDflALDLGGTNLRvvlVkLggN hdfdt HXK_PLAFA : 96- 116: tgqek GTyyAIDFGGTNFRa--VrAslD gkgki HXK_SCHPO : 84- 106: dgneh GSylALDLGGTNLRvcaVeVqgN gkfdi G 7: 45.2912 20( 16) E-x(3)-[AGS]-G-x-[FY]-[LM]-G-[DE]-[ILV]-[LMV]-R-x(2)-[LM]-[ILMV]-x-[FLMV]-x(3)-[AEGN] Occurences: 20(16) HXK1_BOVIN : 742- 765: gnqrf EnmiSGiYLGEIVRniLIdFtkkG flfrg HXK1_HUMAN : 294- 317: gkqlf EkmvSGmYLGELVRliLVkMakeG llfeg HXK1_HUMAN : 742- 765: gkqry EkmiSGmYLGEIVRniLIdFtkkG flfrg HXK1_MOUSE : 742- 765: gkqrf EkmiSGmYLGEIVRniLIdFtkkG flfrg HXK1_RAT : 294- 317: gkqlf EkmvSGmYMGELVRliLVkMakeG llfeg HXK1_RAT : 742- 765: gkqrf EkmiSGmYLGEIVRniLIdFtkkG flfrg HXK2_RAT : 294- 317: gkqlf EkmiSGmYMGELVRliLVkMakaE llfqg HXK2_RAT : 742- 765: gkqrf EkmiSGmYLGEIVRniLIdFtkrG llfrg HXK3_RAT : 307- 330: gaqrf EkmiGGlYLGELVRlvLVhLsqhG vlfgg HXK3_RAT : 749- 772: gkqrf EkmiSGmYLGEIVRhiLLhLtslG vlfrg HXKA_YEAST : 302- 325: gqqaf EkmtSGyYLGELLRlvLLeLnekG lmlkd HXKB_YEAST : 302- 325: gqqtf EkmsSGyYLGEILRlaLMdMykqG fifkn HXKG_YEAST : 323- 346: gfhlf EkrvSGmFLGEVLRniLVdLhsqG lllqq HXKH_HUMAN : 291- 314: gqqly EkliGGkYMGELVRlvLLrLvdeN llfhg HXKH_RAT : 290- 313: gqqly EkiiGGkYMGELVRlvLLkLvdeN llfhg HXKP_HUMAN : 290- 313: gqqly EkliGGkYMGELVRlvLLrLvdeN llfhg HXKP_RAT : 290- 313: gqqly EkiiGGkYMGELVRlvLLkLvdeN llfhg HXK_KLULA : 301- 324: gqqaf EkmtSGyYLGEIMRlvLLdLydsG fifkd HXK_PLAFA : 322- 345: srqlf EkmiSGaYLGEIVRrfMVnVlqsA cskkm HXK_SCHPO : 302- 325: glqty EkmiAGcYLGDILRriLLdLyeqG alfng H 8: 39.6414 17( 16) D-[FL]-G-G-T-N-[FL]-R-x(1,3)-V-x-[AILV]-x(2)-[DGN] Occurences: 17(16) HXK1_BOVIN : 532- 548: dflal DLGGTNFRvllVkIrsG kkstv HXK1_HUMAN : 532- 548: dflal DLGGTNFRvllVkIrsG kkrtv HXK1_MOUSE : 532- 548: dflal DLGGTNFRvllVkIrsG kkrtv HXK1_RAT : 532- 548: dflal DLGGTNFRvllVkIrsG kkrtv HXK2_RAT : 84- 100: eflal DLGGTNFRvlrVrVtdN glqrv HXK2_RAT : 532- 548: dflal DLGGTNFRvllVrVrnG krrgv HXK3_RAT : 542- 558: dflal DLGGTNFRvllVrVaeG svqit HXKA_YEAST : 86- 102: nylai DLGGTNLRvvlVkLsgN htfdt HXKB_YEAST : 86- 100: dflai DLGGTNLRv--VlVklG gdrtf HXKB_YEAST : 86- 102: dflai DLGGTNLRvvlVkLggD rtfdt HXKG_YEAST : 85- 101: vllaa DLGGTNFRicsVnLhgD htfsm HXKH_HUMAN : 79- 95: dflsl DLGGTNFRvmlVkVgeG eegqw HXKH_RAT : 78- 94: dflsl DLGGTNFRvmlVkVgeG eagqw HXKP_HUMAN : 78- 94: dflsl DLGGTNFRvmlVkVgeG eegqw HXKP_RAT : 78- 94: dflsl DLGGTNFRvmlVkVgeG eagqw HXK_KLULA : 86- 100: dflal DLGGTNLRv--VlVklG gnhdf HXK_KLULA : 86- 102: dflal DLGGTNLRvvlVkLggN hdfdt HXK_PLAFA : 102- 116: tyyai DFGGTNFRa--VrAslD gkgki HXK_SCHPO : 90- 106: sylal DLGGTNLRvcaVeVqgN gkfdi I 9: 33.2030 19( 16) G-S-G-x-G-A-A-[ILMV]-x-[AST]-x-[LV] Occurences: 19(16) HXK1_BOVIN : 896- 907: llsed GSGkGAALiTaV gvrlr HXK1_HUMAN : 448- 459: llses GSGkGAAMvTaV ayrla HXK1_HUMAN : 896- 907: llsed GSGkGAALiTaV gvrlr HXK1_MOUSE : 448- 459: llses GSGkGAAMvTaV ayrla HXK1_MOUSE : 896- 907: llsed GSGkGAALiTaV gvrlr HXK1_RAT : 896- 907: llsed GSGkGAALiTaV gvrlr HXK2_RAT : 448- 459: lrsed GSGkGAAMvTaV ayrla HXK2_RAT : 896- 907: lesed GSGkGAALiTaV acrir HXK3_RAT : 903- 914: lqsed GSGkGAALvTrV acrlt HXKA_YEAST : 458- 469: vpaed GSGaGAAViAaL sekri HXKB_YEAST : 459- 470: vpaed GSGaGAAViAaL aqkri HXKG_YEAST : 488- 499: kiakd GSGvGAALcAlV a HXKH_HUMAN : 445- 456: iesee GSGrGAALvSaV ackka HXKH_RAT : 444- 455: iesee GSGrGAALvSaV ackka HXKP_HUMAN : 444- 455: iesee GSGrGAALvSaV ackka HXKP_RAT : 444- 455: iesee GSGrGAALvSaV ackka HXK_KLULA : 458- 469: vaaed GSGvGAAIiAcL tqkrl HXK_PLAFA : 471- 482: ipadd GSGkGAAItAaV ialna HXK_SCHPO : 455- 466: ipaed GSGvGAALvSaL eakgk J 10: 33.1648 21( 16) G-x-I-[FILV]-G-T-G-[CSTV]-N-x(2,3)-Y Occurences: 21(16) HXK1_BOVIN : 227- 238: qhcev GlIIGTGTNac-Y meelr HXK1_BOVIN : 675- 686: ptcev GlIVGTGSNac-Y meemk HXK1_HUMAN : 227- 238: qhcev GlIIGTGTNac-Y meelr HXK1_HUMAN : 675- 686: ptcev GlIVGTGSNac-Y meemk HXK1_MOUSE : 227- 238: qqcev GlIIGTGTNac-Y meelr HXK1_MOUSE : 675- 686: pscei GlIVGTGSNac-Y meemk HXK1_RAT : 227- 238: qqcev GlIIGTGTNac-Y meelr HXK1_RAT : 675- 686: ptcei GlIVGTGTNac-Y meemk HXK2_RAT : 227- 238: qncei GlIVGTGSNac-Y meemr HXK2_RAT : 675- 686: phcev GlIVGTGSNac-Y meemr HXK3_RAT : 682- 693: pccem GlIVGTGTNac-Y meelr HXKA_YEAST : 229- 241: petkm GvIFGTGVNgafY dvvsd HXKB_YEAST : 229- 240: petkm GvIFGTGVNga-Y ydvcs HXKB_YEAST : 229- 241: petkm GvIFGTGVNgayY dvcsd HXKG_YEAST : 247- 258: sepvi GcIFGTGTNgc-Y meein HXKH_HUMAN : 224- 235: hqcev GmIVGTGCNac-Y meemq HXKH_RAT : 223- 234: rqcev GmIVGTGCNac-Y meemq HXKP_HUMAN : 223- 234: hqcev GmIVGTGCNac-Y meemq HXKP_RAT : 223- 234: rqcev GmIVGTGCNac-Y meemq HXK_KLULA : 228- 239: pqtkm GiIIGTGVNga-Y ydvvs HXK_KLULA : 228- 240: pqtkm GiIIGTGVNgayY dvvsg HXK_PLAFA : 263- 274: ppcyi GiILGTGSNgc-Y yepew HXK_PLAFA : 263- 275: ppcyi GiILGTGSNgcyY epewk HXK_SCHPO : 232- 243: pgtei GvIFGTGCNac-Y iekfs K 11: 32.2033 17( 16) G-G-T-N-[FL]-R-x(1,3)-V-x-[AILV]-x(2)-[DGN] Occurences: 17(16) HXK1_BOVIN : 534- 548: laldl GGTNFRvllVkIrsG kkstv HXK1_HUMAN : 534- 548: laldl GGTNFRvllVkIrsG kkrtv HXK1_MOUSE : 534- 548: laldl GGTNFRvllVkIrsG kkrtv HXK1_RAT : 534- 548: laldl GGTNFRvllVkIrsG kkrtv HXK2_RAT : 86- 100: laldl GGTNFRvlrVrVtdN glqrv HXK2_RAT : 534- 548: laldl GGTNFRvllVrVrnG krrgv HXK3_RAT : 544- 558: laldl GGTNFRvllVrVaeG svqit HXKA_YEAST : 88- 102: laidl GGTNLRvvlVkLsgN htfdt HXKB_YEAST : 88- 100: laidl GGTNLRv--VlVklG gdrtf HXKB_YEAST : 88- 102: laidl GGTNLRvvlVkLggD rtfdt HXKG_YEAST : 87- 101: laadl GGTNFRicsVnLhgD htfsm HXKH_HUMAN : 81- 95: lsldl GGTNFRvmlVkVgeG eegqw HXKH_RAT : 80- 94: lsldl GGTNFRvmlVkVgeG eagqw HXKP_HUMAN : 80- 94: lsldl GGTNFRvmlVkVgeG eegqw HXKP_RAT : 80- 94: lsldl GGTNFRvmlVkVgeG eagqw HXK_KLULA : 88- 100: laldl GGTNLRv--VlVklG gnhdf HXK_KLULA : 88- 102: laldl GGTNLRvvlVkLggN hdfdt HXK_PLAFA : 104- 116: yaidf GGTNFRa--VrAslD gkgki HXK_SCHPO : 92- 106: laldl GGTNLRvcaVeVqgN gkfdi L 12: 29.0330 19( 16) S-G-x-G-A-A-[ILMV]-x-[AST]-x-[LV] Occurences: 19(16) HXK1_BOVIN : 897- 907: lsedg SGkGAALiTaV gvrlr HXK1_HUMAN : 449- 459: lsesg SGkGAAMvTaV ayrla HXK1_HUMAN : 897- 907: lsedg SGkGAALiTaV gvrlr HXK1_MOUSE : 449- 459: lsesg SGkGAAMvTaV ayrla HXK1_MOUSE : 897- 907: lsedg SGkGAALiTaV gvrlr HXK1_RAT : 897- 907: lsedg SGkGAALiTaV gvrlr HXK2_RAT : 449- 459: rsedg SGkGAAMvTaV ayrla HXK2_RAT : 897- 907: esedg SGkGAALiTaV acrir HXK3_RAT : 904- 914: qsedg SGkGAALvTrV acrlt HXKA_YEAST : 459- 469: paedg SGaGAAViAaL sekri HXKB_YEAST : 460- 470: paedg SGaGAAViAaL aqkri HXKG_YEAST : 489- 499: iakdg SGvGAALcAlV a HXKH_HUMAN : 446- 456: eseeg SGrGAALvSaV ackka HXKH_RAT : 445- 455: eseeg SGrGAALvSaV ackka HXKP_HUMAN : 445- 455: eseeg SGrGAALvSaV ackka HXKP_RAT : 445- 455: eseeg SGrGAALvSaV ackka HXK_KLULA : 459- 469: aaedg SGvGAAIiAcL tqkrl HXK_PLAFA : 472- 482: paddg SGkGAAItAaV ialna HXK_SCHPO : 456- 466: paedg SGvGAALvSaL eakgk M 13: 28.9948 21( 16) I-[FILV]-G-T-G-[CSTV]-N-x(2,3)-Y Occurences: 21(16) HXK1_BOVIN : 229- 238: cevgl IIGTGTNac-Y meelr HXK1_BOVIN : 677- 686: cevgl IVGTGSNac-Y meemk HXK1_HUMAN : 229- 238: cevgl IIGTGTNac-Y meelr HXK1_HUMAN : 677- 686: cevgl IVGTGSNac-Y meemk HXK1_MOUSE : 229- 238: cevgl IIGTGTNac-Y meelr HXK1_MOUSE : 677- 686: ceigl IVGTGSNac-Y meemk HXK1_RAT : 229- 238: cevgl IIGTGTNac-Y meelr HXK1_RAT : 677- 686: ceigl IVGTGTNac-Y meemk HXK2_RAT : 229- 238: ceigl IVGTGSNac-Y meemr HXK2_RAT : 677- 686: cevgl IVGTGSNac-Y meemr HXK3_RAT : 684- 693: cemgl IVGTGTNac-Y meelr HXKA_YEAST : 231- 241: tkmgv IFGTGVNgafY dvvsd HXKB_YEAST : 231- 240: tkmgv IFGTGVNga-Y ydvcs HXKB_YEAST : 231- 241: tkmgv IFGTGVNgayY dvcsd HXKG_YEAST : 249- 258: pvigc IFGTGTNgc-Y meein HXKH_HUMAN : 226- 235: cevgm IVGTGCNac-Y meemq HXKH_RAT : 225- 234: cevgm IVGTGCNac-Y meemq HXKP_HUMAN : 225- 234: cevgm IVGTGCNac-Y meemq HXKP_RAT : 225- 234: cevgm IVGTGCNac-Y meemq HXK_KLULA : 230- 239: tkmgi IIGTGVNga-Y ydvvs HXK_KLULA : 230- 240: tkmgi IIGTGVNgayY dvvsg HXK_PLAFA : 265- 274: cyigi ILGTGSNgc-Y yepew HXK_PLAFA : 265- 275: cyigi ILGTGSNgcyY epewk HXK_SCHPO : 234- 243: teigv IFGTGCNac-Y iekfs N 14: 28.0333 17( 16) G-T-N-[FL]-R-x(1,3)-V-x-[AILV]-x(2)-[DGN] Occurences: 17(16) HXK1_BOVIN : 535- 548: aldlg GTNFRvllVkIrsG kkstv HXK1_HUMAN : 535- 548: aldlg GTNFRvllVkIrsG kkrtv HXK1_MOUSE : 535- 548: aldlg GTNFRvllVkIrsG kkrtv HXK1_RAT : 535- 548: aldlg GTNFRvllVkIrsG kkrtv HXK2_RAT : 87- 100: aldlg GTNFRvlrVrVtdN glqrv HXK2_RAT : 535- 548: aldlg GTNFRvllVrVrnG krrgv HXK3_RAT : 545- 558: aldlg GTNFRvllVrVaeG svqit HXKA_YEAST : 89- 102: aidlg GTNLRvvlVkLsgN htfdt HXKB_YEAST : 89- 100: aidlg GTNLRv--VlVklG gdrtf HXKB_YEAST : 89- 102: aidlg GTNLRvvlVkLggD rtfdt HXKG_YEAST : 88- 101: aadlg GTNFRicsVnLhgD htfsm HXKH_HUMAN : 82- 95: sldlg GTNFRvmlVkVgeG eegqw HXKH_RAT : 81- 94: sldlg GTNFRvmlVkVgeG eagqw HXKP_HUMAN : 81- 94: sldlg GTNFRvmlVkVgeG eegqw HXKP_RAT : 81- 94: sldlg GTNFRvmlVkVgeG eagqw HXK_KLULA : 89- 100: aldlg GTNLRv--VlVklG gnhdf HXK_KLULA : 89- 102: aldlg GTNLRvvlVkLggN hdfdt HXK_PLAFA : 105- 116: aidfg GTNFRa--VrAslD gkgki HXK_SCHPO : 93- 106: aldlg GTNLRvcaVeVqgN gkfdi O 15: 27.2437 17( 16) L-x(2)-W-T-K-G-F-[DEKR] Occurences: 17(16) HXK1_BOVIN : 616- 624: ldagi LitWTKGFK atdcv HXK1_HUMAN : 616- 624: ldagi LitWTKGFK atdcv HXK1_MOUSE : 616- 624: ldcgi LitWTKGFK atdcv HXK1_RAT : 616- 624: ldcgi LisWTKGFK atdce HXK2_RAT : 168- 176: ldesf LvsWTKGFK ssgve HXK2_RAT : 616- 624: ldqsi LlkWTKGFK asgce HXK3_RAT : 181- 189: ldkst LisWTKGFR csgve HXKA_YEAST : 171- 179: inegi LqrWTKGFD ipnve HXKB_YEAST : 171- 179: inegi LqrWTKGFD ipnie HXKG_YEAST : 177- 185: lnsgt LirWTKGFR iadtv HXKH_HUMAN : 165- 173: idkgi LlnWTKGFK asgae HXKH_RAT : 164- 172: ldkgi LlnWTKGFK asgae HXKP_HUMAN : 164- 172: idkgi LlnWTKGFK asgae HXKP_RAT : 164- 172: ldkgi LlnWTKGFK asgae HXK_KLULA : 170- 178: insgv LqrWTKGFD iegve HXK_PLAFA : 196- 204: incsi LidWTKGFE tgrat HXK_SCHPO : 173- 181: indas LvaWTKGFD idgve P 16: 26.7437 22( 16) L-x(1,2)-W-T-K-G-F-[DEKR] Occurences: 22(16) HXK1_BOVIN : 616- 624: ldagi LitWTKGFK atdcv HXK1_HUMAN : 616- 624: ldagi LitWTKGFK atdcv HXK1_MOUSE : 616- 624: ldcgi LitWTKGFK atdcv HXK1_RAT : 616- 624: ldcgi LisWTKGFK atdce HXK2_RAT : 168- 176: ldesf LvsWTKGFK ssgve HXK2_RAT : 616- 624: ldqsi LlkWTKGFK asgce HXK2_RAT : 617- 624: dqsil Lk-WTKGFK asgce HXK3_RAT : 181- 189: ldkst LisWTKGFR csgve HXKA_YEAST : 171- 179: inegi LqrWTKGFD ipnve HXKB_YEAST : 171- 179: inegi LqrWTKGFD ipnie HXKG_YEAST : 177- 185: lnsgt LirWTKGFR iadtv HXKH_HUMAN : 165- 173: idkgi LlnWTKGFK asgae HXKH_HUMAN : 166- 173: dkgil Ln-WTKGFK asgae HXKH_RAT : 164- 172: ldkgi LlnWTKGFK asgae HXKH_RAT : 165- 172: dkgil Ln-WTKGFK asgae HXKP_HUMAN : 164- 172: idkgi LlnWTKGFK asgae HXKP_HUMAN : 165- 172: dkgil Ln-WTKGFK asgae HXKP_RAT : 164- 172: ldkgi LlnWTKGFK asgae HXKP_RAT : 165- 172: dkgil Ln-WTKGFK asgae HXK_KLULA : 170- 178: insgv LqrWTKGFD iegve HXK_PLAFA : 196- 204: incsi LidWTKGFE tgrat HXK_SCHPO : 173- 181: indas LvaWTKGFD idgve Q 17: 24.8629 21( 16) G-x-G-A-A-[ILMV]-x-[AST]-x-[LV] Occurences: 21(16) HXK1_BOVIN : 450- 459: sesgt GkGAAMvTaV ayrla HXK1_BOVIN : 898- 907: sedgs GkGAALiTaV gvrlr HXK1_HUMAN : 450- 459: sesgs GkGAAMvTaV ayrla HXK1_HUMAN : 898- 907: sedgs GkGAALiTaV gvrlr HXK1_MOUSE : 450- 459: sesgs GkGAAMvTaV ayrla HXK1_MOUSE : 898- 907: sedgs GkGAALiTaV gvrlr HXK1_RAT : 450- 459: sesgt GkGAAMvTaV ayrla HXK1_RAT : 898- 907: sedgs GkGAALiTaV gvrlr HXK2_RAT : 450- 459: sedgs GkGAAMvTaV ayrla HXK2_RAT : 898- 907: sedgs GkGAALiTaV acrir HXK3_RAT : 905- 914: sedgs GkGAALvTrV acrlt HXKA_YEAST : 460- 469: aedgs GaGAAViAaL sekri HXKB_YEAST : 461- 470: aedgs GaGAAViAaL aqkri HXKG_YEAST : 490- 499: akdgs GvGAALcAlV a HXKH_HUMAN : 447- 456: seegs GrGAALvSaV ackka HXKH_RAT : 446- 455: seegs GrGAALvSaV ackka HXKP_HUMAN : 446- 455: seegs GrGAALvSaV ackka HXKP_RAT : 446- 455: seegs GrGAALvSaV ackka HXK_KLULA : 460- 469: aedgs GvGAAIiAcL tqkrl HXK_PLAFA : 473- 482: addgs GkGAAItAaV ialna HXK_SCHPO : 457- 466: aedgs GvGAALvSaL eakgk R 18: 23.0736 17( 16) W-T-K-G-F-[DEKR] Occurences: 17(16) HXK1_BOVIN : 619- 624: gilit WTKGFK atdcv HXK1_HUMAN : 619- 624: gilit WTKGFK atdcv HXK1_MOUSE : 619- 624: gilit WTKGFK atdcv HXK1_RAT : 619- 624: gilis WTKGFK atdce HXK2_RAT : 171- 176: sflvs WTKGFK ssgve HXK2_RAT : 619- 624: sillk WTKGFK asgce HXK3_RAT : 184- 189: stlis WTKGFR csgve HXKA_YEAST : 174- 179: gilqr WTKGFD ipnve HXKB_YEAST : 174- 179: gilqr WTKGFD ipnie HXKG_YEAST : 180- 185: gtlir WTKGFR iadtv HXKH_HUMAN : 168- 173: gilln WTKGFK asgae HXKH_RAT : 167- 172: gilln WTKGFK asgae HXKP_HUMAN : 167- 172: gilln WTKGFK asgae HXKP_RAT : 167- 172: gilln WTKGFK asgae HXK_KLULA : 173- 178: gvlqr WTKGFD iegve HXK_PLAFA : 199- 204: silid WTKGFE tgrat HXK_SCHPO : 176- 181: aslva WTKGFD idgve S 19: 22.5683 21( 16) G-T-G-[CSTV]-N-x(2,3)-Y Occurences: 21(16) HXK1_BOVIN : 231- 238: vglii GTGTNac-Y meelr HXK1_BOVIN : 679- 686: vgliv GTGSNac-Y meemk HXK1_HUMAN : 231- 238: vglii GTGTNac-Y meelr HXK1_HUMAN : 679- 686: vgliv GTGSNac-Y meemk HXK1_MOUSE : 231- 238: vglii GTGTNac-Y meelr HXK1_MOUSE : 679- 686: igliv GTGSNac-Y meemk HXK1_RAT : 231- 238: vglii GTGTNac-Y meelr HXK1_RAT : 679- 686: igliv GTGTNac-Y meemk HXK2_RAT : 231- 238: igliv GTGSNac-Y meemr HXK2_RAT : 679- 686: vgliv GTGSNac-Y meemr HXK3_RAT : 686- 693: mgliv GTGTNac-Y meelr HXKA_YEAST : 233- 241: mgvif GTGVNgafY dvvsd HXKB_YEAST : 233- 240: mgvif GTGVNga-Y ydvcs HXKB_YEAST : 233- 241: mgvif GTGVNgayY dvcsd HXKG_YEAST : 251- 258: igcif GTGTNgc-Y meein HXKH_HUMAN : 228- 235: vgmiv GTGCNac-Y meemq HXKH_RAT : 227- 234: vgmiv GTGCNac-Y meemq HXKP_HUMAN : 227- 234: vgmiv GTGCNac-Y meemq HXKP_RAT : 227- 234: vgmiv GTGCNac-Y meemq HXK_KLULA : 232- 239: mgiii GTGVNga-Y ydvvs HXK_KLULA : 232- 240: mgiii GTGVNgayY dvvsg HXK_PLAFA : 267- 274: igiil GTGSNgc-Y yepew HXK_PLAFA : 267- 275: igiil GTGSNgcyY epewk HXK_SCHPO : 236- 243: igvif GTGCNac-Y iekfs T 20: 18.9036 17( 16) T-K-G-F-[DEKR] Occurences: 17(16) HXK1_BOVIN : 620- 624: ilitw TKGFK atdcv HXK1_HUMAN : 620- 624: ilitw TKGFK atdcv HXK1_MOUSE : 620- 624: ilitw TKGFK atdcv HXK1_RAT : 620- 624: ilisw TKGFK atdce HXK2_RAT : 172- 176: flvsw TKGFK ssgve HXK2_RAT : 620- 624: illkw TKGFK asgce HXK3_RAT : 185- 189: tlisw TKGFR csgve HXKA_YEAST : 175- 179: ilqrw TKGFD ipnve HXKB_YEAST : 175- 179: ilqrw TKGFD ipnie HXKG_YEAST : 181- 185: tlirw TKGFR iadtv HXKH_HUMAN : 169- 173: illnw TKGFK asgae HXKH_RAT : 168- 172: illnw TKGFK asgae HXKP_HUMAN : 168- 172: illnw TKGFK asgae HXKP_RAT : 168- 172: illnw TKGFK asgae HXK_KLULA : 174- 178: vlqrw TKGFD iegve HXK_PLAFA : 200- 204: ilidw TKGFE tgrat HXK_SCHPO : 177- 181: slvaw TKGFD idgve Number of patterns evaluated by Pratt:14103 Total running time: 23 seconds