------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file HESB PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename HESB.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: HEB1_ANAVA 123 HEB2_ANAVA 123 HESB_ANASP 113 HESB_PLEBO 121 YADR_ECOLI 114 YADR_HAEIN 114 YFHF_ECOLI 107 YFHF_HAEIN 107 YNIS_BRAJA 118 YNIU_RHOSH 106 Pratt run started at Thu Feb 6 19:53:42 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 39.7005 12( 10) G-x(2,4)-F-x(1,3)-N-P-N-x(4)-C-x-C-G-x-S-F 2: 27.1904 10( 10) F-x(3)-N-P-N-x(4)-C-x(0,2)-G-x(1,3)-G 3: 27.1904 11( 10) G-x(0,2)-F-x(3)-N-P-N-x(4)-C-x(0,2)-G 4: 23.0203 10( 10) N-P-N-x(4)-C-x(0,2)-G-x(1,3)-G 5: 23.0203 17( 10) F-x(1,3)-N-P-N-x(4)-C-x(0,2)-G 6: 20.8503 10( 10) C-x-C-G-x-S-F 7: 18.8503 10( 10) P-N-x(4)-C-x(0,2)-G-x(1,3)-G 8: 16.6802 10( 10) C-G-x-S-F 9: 16.6802 10( 10) G-C-x-G-x(2)-Y 10: 16.1802 18( 10) G-x(0,1)-C-x-G-x(2)-Y 11: 15.1802 12( 10) G-C-x(0,1)-G-x(0,2)-F 12: 15.1802 14( 10) V-x(3,5)-G-C-x(0,1)-G 13: 14.6802 10( 10) N-x(4)-C-x(0,2)-G-x(1,3)-G 14: 12.5102 10( 10) G-x-S-F 15: 12.5102 10( 10) C-x-G-x(2)-Y 16: 12.0102 20( 10) G-C-x(0,1)-G 17: 12.0102 10( 10) G-x(3)-D-x(1,2)-V 18: 12.0102 15( 10) L-x(1,2)-G-x(3)-D 19: 11.5102 10( 10) C-G-x(1,3)-G 20: 11.5102 29( 10) G-x(0,1)-C-x(0,1)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 78.0554 13( 10) L-x(1,2)-G-x(2)-[ILV]-D-[FY]-[TV]-x-[AEGS]-[GLP]-x-[DEGNS]-[EST]-x-F-x(3)-N-P-N-[AV]-x-[DEGST]-[EGNST]-C-[GS]-C-G-x-S-F B 2: 49.8569 12( 10) G-x(2,4)-F-x(1,3)-N-P-N-[AV]-x-[DEGST]-[EGNST]-C-[GS]-C-G-x-S-F C 3: 42.5063 11( 10) G-x(0,2)-F-x(3)-N-P-N-[AV]-x-[DEGST]-[EGNST]-C-x(0,2)-G-x-S-F D 4: 42.0702 10( 10) G-x(2)-[FILV]-D-x(1,2)-V-x-[ADEGS]-[GLP]-x(2)-[EST]-[GI]-x(4)-[NV]-x(2)-[AV]-x-[DEGST]-x(2)-[GS]-x-[GQ]-x(2)-[FIV] E 5: 38.3363 17( 10) F-x(1,3)-N-P-N-[AV]-x-[DEGST]-[EGNST]-C-x(0,2)-G-x-S-F F 6: 37.3854 10( 10) F-x(3)-N-P-N-[AV]-x-[DEGST]-[EGNST]-C-x(0,2)-G-x(1,3)-G-x-[RS] G 7: 33.2154 10( 10) N-P-N-[AV]-x-[DEGST]-[EGNST]-C-x(0,2)-G-x(1,3)-G-x-[RS] H 8: 29.0453 10( 10) P-N-[AV]-x-[DEGST]-[EGNST]-C-x(0,2)-G-x(1,3)-G-x-[RS] I 9: 24.8753 10( 10) N-[AV]-x-[DEGST]-[EGNST]-C-x(0,2)-G-x(1,3)-G-x-[RS] J 10: 24.0308 10( 10) C-[GS]-C-G-x-S-F K 11: 23.9950 10( 10) G-C-[ANS]-G-x(2)-Y-x-[FILM]-x-[FILV] L 12: 23.4950 18( 10) G-x(0,1)-C-[ANS]-G-x(2)-Y-x-[FILM]-x-[FILV] M 13: 20.8447 10( 10) G-C-x(0,1)-G-x(2)-Y-x-[FILM]-x-[FILV] N 14: 20.4063 14( 10) V-x(3,5)-G-C-x(0,1)-G-x(2)-[FY]-x-[FILMV] O 15: 20.3447 18( 10) G-x(0,1)-C-x(0,1)-G-x(2)-Y-x-[FILM]-x-[FILV] P 16: 19.8250 10( 10) C-[ANS]-G-x(2)-Y-x-[FILM]-x-[FILV] Q 17: 16.6802 10( 10) C-G-x-S-F R 18: 15.1802 12( 10) G-C-x(0,1)-G-x(0,2)-F S 19: 14.7294 10( 10) C-G-x(1,3)-G-x-[RS] T 20: 12.5102 10( 10) G-x-S-F Best patterns with alignements: fitness hits(seqs) Pattern A 1: 78.0554 13( 10) L-x(1,2)-G-x(2)-[ILV]-D-[FY]-[TV]-x-[AEGS]-[GLP]-x-[DEGNS]-[EST]-x-F-x(3)-N-P-N-[AV]-x-[DEGST]-[EGNST]-C-[GS]-C-G-x-S-F Occurences: 13(10) HEB1_ANAVA : 76- 110: aksap LleGivIDFVeGLvESgFkftNPNAtSTCGCGkSF kagdc HEB1_ANAVA : 77- 110: ksapl Le-GivIDFVeGLvESgFkftNPNAtSTCGCGkSF kagdc HEB2_ANAVA : 76- 110: sqsap LleGvvVDFVdGLlESgFkfsNPNAtDTCGCGkSF qagnc HEB2_ANAVA : 77- 110: qsapl Le-GvvVDFVdGLlESgFkfsNPNAtDTCGCGkSF qagnc HESB_ANASP : 76- 110: aksap LleGivIDFVeGLvESgFkftNPNAtSTCGCGkSF kgg HESB_ANASP : 77- 110: ksapl Le-GivIDFVeGLvESgFkftNPNAtSTCGCGkSF kgg HESB_PLEBO : 74- 108: pqaaa LinGvvVDFVeGLmDSgFkfsNPNAtDTCGCGqSF qagdc YADR_ECOLI : 79- 112: mslqy Lv-GgsVDYTeGLeGSrFivtNPNAkSTCGCGsSF si YADR_HAEIN : 79- 112: mslqy Li-GgtVDYTeGLeGSrFtvnNPNAtSTCGCGsSF si YFHF_ECOLI : 72- 105: kslqf Ld-GtqLDFVkEGlNEgFkftNPNVkDECGCGeSF hv YFHF_HAEIN : 72- 105: kslvy Ln-GieLDYVkEGlNEgFkynNPNVkESCGCGeSF hv YNIS_BRAJA : 72- 105: ksreh La-GttIDFVlAPeSSgFtfhNPNAaTNCSCGkSF gcrkh YNIU_RHOSH : 72- 105: qsgty Ln-GvtIDFVtSLeGTgFvfdNPNAkGGCGCGkSF c B 2: 49.8569 12( 10) G-x(2,4)-F-x(1,3)-N-P-N-[AV]-x-[DEGST]-[EGNST]-C-[GS]-C-G-x-S-F Occurences: 12(10) HEB1_ANAVA : 92- 110: glves Gfk--Ft--NPNAtSTCGCGkSF kagdc HEB2_ANAVA : 92- 110: glles Gfk--Fs--NPNAtDTCGCGkSF qagnc HESB_ANASP : 92- 110: glves Gfk--Ft--NPNAtSTCGCGkSF kgg HESB_PLEBO : 90- 108: glmds Gfk--Fs--NPNAtDTCGCGqSF qagdc YADR_ECOLI : 92- 112: tegle Gsr--FivtNPNAkSTCGCGsSF si YADR_HAEIN : 92- 112: tegle Gsr--FtvnNPNAtSTCGCGsSF si YFHF_ECOLI : 83- 105: dfvke GlnegFkftNPNVkDECGCGeSF hv YFHF_ECOLI : 87- 105: eglne Gfk--Ft--NPNVkDECGCGeSF hv YFHF_HAEIN : 83- 105: dyvke GlnegFkynNPNVkESCGCGeSF hv YNIS_BRAJA : 87- 105: apess Gft--Fh--NPNAaTNCSCGkSF gcrkh YNIU_RHOSH : 85- 105: vtsle GtgfvFd--NPNAkGGCGCGkSF c YNIU_RHOSH : 85- 105: vtsle Gtg--FvfdNPNAkGGCGCGkSF c YNIU_RHOSH : 87- 105: slegt Gfv--Fd--NPNAkGGCGCGkSF c C 3: 42.5063 11( 10) G-x(0,2)-F-x(3)-N-P-N-[AV]-x-[DEGST]-[EGNST]-C-x(0,2)-G-x-S-F Occurences: 11(10) HEB1_ANAVA : 92- 110: glves G--FkftNPNAtSTCgcGkSF kagdc HEB2_ANAVA : 92- 110: glles G--FkfsNPNAtDTCgcGkSF qagnc HESB_ANASP : 92- 110: glves G--FkftNPNAtSTCgcGkSF kgg HESB_PLEBO : 90- 108: glmds G--FkfsNPNAtDTCgcGqSF qagdc YADR_ECOLI : 92- 112: tegle GsrFivtNPNAkSTCgcGsSF si YADR_HAEIN : 92- 112: tegle GsrFtvnNPNAtSTCgcGsSF si YFHF_ECOLI : 87- 105: eglne G--FkftNPNVkDECgcGeSF hv YFHF_HAEIN : 87- 105: eglne G--FkynNPNVkESCgcGeSF hv YNIS_BRAJA : 87- 105: apess G--FtfhNPNAaTNCscGkSF gcrkh YNIU_RHOSH : 85- 105: vtsle GtgFvfdNPNAkGGCgcGkSF c YNIU_RHOSH : 87- 105: slegt G--FvfdNPNAkGGCgcGkSF c D 4: 42.0702 10( 10) G-x(2)-[FILV]-D-x(1,2)-V-x-[ADEGS]-[GLP]-x(2)-[EST]-[GI]-x(4)-[NV]-x(2)-[AV]-x-[DEGST]-x(2)-[GS]-x-[GQ]-x(2)-[FIV] Occurences: 10(10) HEB1_ANAVA : 79- 110: aplle GivIDf-VeGLveSGfkftNpnAtStcGcGksF kagdc HEB2_ANAVA : 79- 110: aplle GvvVDf-VdGLleSGfkfsNpnAtDtcGcGksF qagnc HESB_ANASP : 79- 110: aplle GivIDf-VeGLveSGfkftNpnAtStcGcGksF kgg HESB_PLEBO : 77- 108: aalin GvvVDf-VeGLmdSGfkfsNpnAtDtcGcGqsF qagdc YADR_ECOLI : 48- 80: sgfqy GftFDdqVnEGdmTIekqgVglVvDpmSlQylV ggsvd YADR_HAEIN : 48- 80: sgfqy GftFDekVnDGdlTIeksgVqlViDpmSlQylI ggtvd YFHF_ECOLI : 74- 105: lqfld GtqLDf-VkEGlnEGfkftNpnVkDecGcGesF hv YFHF_HAEIN : 74- 105: lvyln GieLDy-VkEGlnEGfkynNpnVkEscGcGesF hv YNIS_BRAJA : 74- 105: rehla GttIDf-VlAPesSGftfhNpnAaTncScGksF gcrkh YNIU_RHOSH : 74- 105: gtyln GvtIDf-VtSLegTGfvfdNpnAkGgcGcGksF c E 5: 38.3363 17( 10) F-x(1,3)-N-P-N-[AV]-x-[DEGST]-[EGNST]-C-x(0,2)-G-x-S-F Occurences: 17(10) HEB1_ANAVA : 93- 110: lvesg FkftNPNAtSTCgcGkSF kagdc HEB1_ANAVA : 95- 110: esgfk Ft--NPNAtSTCgcGkSF kagdc HEB2_ANAVA : 93- 110: llesg FkfsNPNAtDTCgcGkSF qagnc HEB2_ANAVA : 95- 110: esgfk Fs--NPNAtDTCgcGkSF qagnc HESB_ANASP : 93- 110: lvesg FkftNPNAtSTCgcGkSF kgg HESB_ANASP : 95- 110: esgfk Ft--NPNAtSTCgcGkSF kgg HESB_PLEBO : 91- 108: lmdsg FkfsNPNAtDTCgcGqSF qagdc HESB_PLEBO : 93- 108: dsgfk Fs--NPNAtDTCgcGqSF qagdc YADR_ECOLI : 95- 112: legsr FivtNPNAkSTCgcGsSF si YADR_HAEIN : 95- 112: legsr FtvnNPNAtSTCgcGsSF si YFHF_ECOLI : 88- 105: glneg FkftNPNVkDECgcGeSF hv YFHF_ECOLI : 90- 105: negfk Ft--NPNVkDECgcGeSF hv YFHF_HAEIN : 88- 105: glneg FkynNPNVkESCgcGeSF hv YNIS_BRAJA : 88- 105: pessg FtfhNPNAaTNCscGkSF gcrkh YNIS_BRAJA : 90- 105: ssgft Fh--NPNAaTNCscGkSF gcrkh YNIU_RHOSH : 88- 105: legtg FvfdNPNAkGGCgcGkSF c YNIU_RHOSH : 90- 105: gtgfv Fd--NPNAkGGCgcGkSF c F 6: 37.3854 10( 10) F-x(3)-N-P-N-[AV]-x-[DEGST]-[EGNST]-C-x(0,2)-G-x(1,3)-G-x-[RS] Occurences: 10(10) HEB1_ANAVA : 93- 109: lvesg FkftNPNAtSTC--Gc--GkS fkagd HEB2_ANAVA : 93- 109: llesg FkfsNPNAtDTC--Gc--GkS fqagn HESB_ANASP : 93- 109: lvesg FkftNPNAtSTC--Gc--GkS fkgg HESB_PLEBO : 91- 107: lmdsg FkfsNPNAtDTC--Gc--GqS fqagd YADR_ECOLI : 95- 111: legsr FivtNPNAkSTC--Gc--GsS fsi YADR_HAEIN : 95- 111: legsr FtvnNPNAtSTC--Gc--GsS fsi YFHF_ECOLI : 88- 104: glneg FkftNPNVkDEC--Gc--GeS fhv YFHF_HAEIN : 88- 104: glneg FkynNPNVkESC--Gc--GeS fhv YNIS_BRAJA : 88- 108: pessg FtfhNPNAaTNCscGksfGcR khvqa YNIU_RHOSH : 88- 104: legtg FvfdNPNAkGGC--Gc--GkS fc G 7: 33.2154 10( 10) N-P-N-[AV]-x-[DEGST]-[EGNST]-C-x(0,2)-G-x(1,3)-G-x-[RS] Occurences: 10(10) HEB1_ANAVA : 97- 109: gfkft NPNAtSTC--Gc--GkS fkagd HEB2_ANAVA : 97- 109: gfkfs NPNAtDTC--Gc--GkS fqagn HESB_ANASP : 97- 109: gfkft NPNAtSTC--Gc--GkS fkgg HESB_PLEBO : 95- 107: gfkfs NPNAtDTC--Gc--GqS fqagd YADR_ECOLI : 99- 111: rfivt NPNAkSTC--Gc--GsS fsi YADR_HAEIN : 99- 111: rftvn NPNAtSTC--Gc--GsS fsi YFHF_ECOLI : 92- 104: gfkft NPNVkDEC--Gc--GeS fhv YFHF_HAEIN : 92- 104: gfkyn NPNVkESC--Gc--GeS fhv YNIS_BRAJA : 92- 108: gftfh NPNAaTNCscGksfGcR khvqa YNIU_RHOSH : 92- 104: gfvfd NPNAkGGC--Gc--GkS fc H 8: 29.0453 10( 10) P-N-[AV]-x-[DEGST]-[EGNST]-C-x(0,2)-G-x(1,3)-G-x-[RS] Occurences: 10(10) HEB1_ANAVA : 98- 109: fkftn PNAtSTC--Gc--GkS fkagd HEB2_ANAVA : 98- 109: fkfsn PNAtDTC--Gc--GkS fqagn HESB_ANASP : 98- 109: fkftn PNAtSTC--Gc--GkS fkgg HESB_PLEBO : 96- 107: fkfsn PNAtDTC--Gc--GqS fqagd YADR_ECOLI : 100- 111: fivtn PNAkSTC--Gc--GsS fsi YADR_HAEIN : 100- 111: ftvnn PNAtSTC--Gc--GsS fsi YFHF_ECOLI : 93- 104: fkftn PNVkDEC--Gc--GeS fhv YFHF_HAEIN : 93- 104: fkynn PNVkESC--Gc--GeS fhv YNIS_BRAJA : 93- 108: ftfhn PNAaTNCscGksfGcR khvqa YNIU_RHOSH : 93- 104: fvfdn PNAkGGC--Gc--GkS fc I 9: 24.8753 10( 10) N-[AV]-x-[DEGST]-[EGNST]-C-x(0,2)-G-x(1,3)-G-x-[RS] Occurences: 10(10) HEB1_ANAVA : 99- 109: kftnp NAtSTC--Gc--GkS fkagd HEB2_ANAVA : 99- 109: kfsnp NAtDTC--Gc--GkS fqagn HESB_ANASP : 99- 109: kftnp NAtSTC--Gc--GkS fkgg HESB_PLEBO : 97- 107: kfsnp NAtDTC--Gc--GqS fqagd YADR_ECOLI : 101- 111: ivtnp NAkSTC--Gc--GsS fsi YADR_HAEIN : 101- 111: tvnnp NAtSTC--Gc--GsS fsi YFHF_ECOLI : 94- 104: kftnp NVkDEC--Gc--GeS fhv YFHF_HAEIN : 94- 104: kynnp NVkESC--Gc--GeS fhv YNIS_BRAJA : 94- 108: tfhnp NAaTNCscGksfGcR khvqa YNIU_RHOSH : 94- 104: vfdnp NAkGGC--Gc--GkS fc J 10: 24.0308 10( 10) C-[GS]-C-G-x-S-F Occurences: 10(10) HEB1_ANAVA : 104- 110: natst CGCGkSF kagdc HEB2_ANAVA : 104- 110: natdt CGCGkSF qagnc HESB_ANASP : 104- 110: natst CGCGkSF kgg HESB_PLEBO : 102- 108: natdt CGCGqSF qagdc YADR_ECOLI : 106- 112: nakst CGCGsSF si YADR_HAEIN : 106- 112: natst CGCGsSF si YFHF_ECOLI : 99- 105: nvkde CGCGeSF hv YFHF_HAEIN : 99- 105: nvkes CGCGeSF hv YNIS_BRAJA : 99- 105: naatn CSCGkSF gcrkh YNIU_RHOSH : 99- 105: nakgg CGCGkSF c K 11: 23.9950 10( 10) G-C-[ANS]-G-x(2)-Y-x-[FILM]-x-[FILV] Occurences: 10(10) HEB1_ANAVA : 39- 49: svkdg GCSGyeYlMdV tsqpq HEB2_ANAVA : 39- 49: avedg GCSGyqYsIkI inapq HESB_ANASP : 39- 49: svkdg GCSGyeYlMdV tsqpq HESB_PLEBO : 37- 47: gvsdg GCSGyqYtLdI anepk YADR_ECOLI : 41- 51: yitgg GCSGfqYgFtF ddqvn YADR_HAEIN : 41- 51: yitgg GCSGfqYgFtF dekvn YFHF_ECOLI : 34- 44: axeps GCSGmaYvLeF vdept YFHF_HAEIN : 34- 44: gvkts GCSGlaYvLeF vdvln YNIS_BRAJA : 34- 44: mieag GCNGfkYkMgI adepk YNIU_RHOSH : 34- 44: mvqsg GCAGlkYgMsL eltea L 12: 23.4950 18( 10) G-x(0,1)-C-[ANS]-G-x(2)-Y-x-[FILM]-x-[FILV] Occurences: 18(10) HEB1_ANAVA : 38- 49: isvkd GgCSGyeYlMdV tsqpq HEB1_ANAVA : 39- 49: svkdg G-CSGyeYlMdV tsqpq HEB2_ANAVA : 38- 49: vaved GgCSGyqYsIkI inapq HEB2_ANAVA : 39- 49: avedg G-CSGyqYsIkI inapq HESB_ANASP : 38- 49: vsvkd GgCSGyeYlMdV tsqpq HESB_ANASP : 39- 49: svkdg G-CSGyeYlMdV tsqpq HESB_PLEBO : 36- 47: vgvsd GgCSGyqYtLdI anepk HESB_PLEBO : 37- 47: gvsdg G-CSGyqYtLdI anepk YADR_ECOLI : 40- 51: vyitg GgCSGfqYgFtF ddqvn YADR_ECOLI : 41- 51: yitgg G-CSGfqYgFtF ddqvn YADR_HAEIN : 40- 51: vyitg GgCSGfqYgFtF dekvn YADR_HAEIN : 41- 51: yitgg G-CSGfqYgFtF dekvn YFHF_ECOLI : 34- 44: axeps G-CSGmaYvLeF vdept YFHF_HAEIN : 34- 44: gvkts G-CSGlaYvLeF vdvln YNIS_BRAJA : 33- 44: vmiea GgCNGfkYkMgI adepk YNIS_BRAJA : 34- 44: mieag G-CNGfkYkMgI adepk YNIU_RHOSH : 33- 44: lmvqs GgCAGlkYgMsL eltea YNIU_RHOSH : 34- 44: mvqsg G-CAGlkYgMsL eltea M 13: 20.8447 10( 10) G-C-x(0,1)-G-x(2)-Y-x-[FILM]-x-[FILV] Occurences: 10(10) HEB1_ANAVA : 39- 49: svkdg GCsGyeYlMdV tsqpq HEB2_ANAVA : 39- 49: avedg GCsGyqYsIkI inapq HESB_ANASP : 39- 49: svkdg GCsGyeYlMdV tsqpq HESB_PLEBO : 37- 47: gvsdg GCsGyqYtLdI anepk YADR_ECOLI : 41- 51: yitgg GCsGfqYgFtF ddqvn YADR_HAEIN : 41- 51: yitgg GCsGfqYgFtF dekvn YFHF_ECOLI : 34- 44: axeps GCsGmaYvLeF vdept YFHF_HAEIN : 34- 44: gvkts GCsGlaYvLeF vdvln YNIS_BRAJA : 34- 44: mieag GCnGfkYkMgI adepk YNIU_RHOSH : 34- 44: mvqsg GCaGlkYgMsL eltea N 14: 20.4063 14( 10) V-x(3,5)-G-C-x(0,1)-G-x(2)-[FY]-x-[FILMV] Occurences: 14(10) HEB1_ANAVA : 35- 47: giris Vkdg--GCsGyeYlM dvtsq HEB2_ANAVA : 33- 47: qrgir VavedgGCsGyqYsI kiina HEB2_ANAVA : 35- 47: girva Vedg--GCsGyqYsI kiina HESB_ANASP : 33- 47: tkgir VsvkdgGCsGyeYlM dvtsq HESB_ANASP : 35- 47: girvs Vkdg--GCsGyeYlM dvtsq HESB_PLEBO : 31- 45: tkgir VgvsdgGCsGyqYtL diane HESB_PLEBO : 33- 45: girvg Vsdg--GCsGyqYtL diane YADR_ECOLI : 35- 49: nlklr VyitggGCsGfqYgF tfddq YADR_HAEIN : 35- 49: dlklr VyitggGCsGfqYgF tfdek YFHF_ECOLI : 95- 107: ftnpn Vkdec-GC-GesFhV YFHF_HAEIN : 30- 42: glrlg Vkts--GCsGlaYvL efvdv YFHF_HAEIN : 95- 107: ynnpn Vkesc-GC-GesFhV YNIS_BRAJA : 28- 42: agglr VmieagGCnGfkYkM giade YNIU_RHOSH : 30- 42: glrlm Vqsg--GCaGlkYgM slelt O 15: 20.3447 18( 10) G-x(0,1)-C-x(0,1)-G-x(2)-Y-x-[FILM]-x-[FILV] Occurences: 18(10) HEB1_ANAVA : 38- 49: isvkd GgCsGyeYlMdV tsqpq HEB1_ANAVA : 39- 49: svkdg G-CsGyeYlMdV tsqpq HEB2_ANAVA : 38- 49: vaved GgCsGyqYsIkI inapq HEB2_ANAVA : 39- 49: avedg G-CsGyqYsIkI inapq HESB_ANASP : 38- 49: vsvkd GgCsGyeYlMdV tsqpq HESB_ANASP : 39- 49: svkdg G-CsGyeYlMdV tsqpq HESB_PLEBO : 36- 47: vgvsd GgCsGyqYtLdI anepk HESB_PLEBO : 37- 47: gvsdg G-CsGyqYtLdI anepk YADR_ECOLI : 40- 51: vyitg GgCsGfqYgFtF ddqvn YADR_ECOLI : 41- 51: yitgg G-CsGfqYgFtF ddqvn YADR_HAEIN : 40- 51: vyitg GgCsGfqYgFtF dekvn YADR_HAEIN : 41- 51: yitgg G-CsGfqYgFtF dekvn YFHF_ECOLI : 34- 44: axeps G-CsGmaYvLeF vdept YFHF_HAEIN : 34- 44: gvkts G-CsGlaYvLeF vdvln YNIS_BRAJA : 33- 44: vmiea GgCnGfkYkMgI adepk YNIS_BRAJA : 34- 44: mieag G-CnGfkYkMgI adepk YNIU_RHOSH : 33- 44: lmvqs GgCaGlkYgMsL eltea YNIU_RHOSH : 34- 44: mvqsg G-CaGlkYgMsL eltea P 16: 19.8250 10( 10) C-[ANS]-G-x(2)-Y-x-[FILM]-x-[FILV] Occurences: 10(10) HEB1_ANAVA : 40- 49: vkdgg CSGyeYlMdV tsqpq HEB2_ANAVA : 40- 49: vedgg CSGyqYsIkI inapq HESB_ANASP : 40- 49: vkdgg CSGyeYlMdV tsqpq HESB_PLEBO : 38- 47: vsdgg CSGyqYtLdI anepk YADR_ECOLI : 42- 51: itggg CSGfqYgFtF ddqvn YADR_HAEIN : 42- 51: itggg CSGfqYgFtF dekvn YFHF_ECOLI : 35- 44: xepsg CSGmaYvLeF vdept YFHF_HAEIN : 35- 44: vktsg CSGlaYvLeF vdvln YNIS_BRAJA : 35- 44: ieagg CNGfkYkMgI adepk YNIU_RHOSH : 35- 44: vqsgg CAGlkYgMsL eltea Q 17: 16.6802 10( 10) C-G-x-S-F Occurences: 10(10) HEB1_ANAVA : 106- 110: tstcg CGkSF kagdc HEB2_ANAVA : 106- 110: tdtcg CGkSF qagnc HESB_ANASP : 106- 110: tstcg CGkSF kgg HESB_PLEBO : 104- 108: tdtcg CGqSF qagdc YADR_ECOLI : 108- 112: kstcg CGsSF si YADR_HAEIN : 108- 112: tstcg CGsSF si YFHF_ECOLI : 101- 105: kdecg CGeSF hv YFHF_HAEIN : 101- 105: kescg CGeSF hv YNIS_BRAJA : 101- 105: atncs CGkSF gcrkh YNIU_RHOSH : 101- 105: kggcg CGkSF c R 18: 15.1802 12( 10) G-C-x(0,1)-G-x(0,2)-F Occurences: 12(10) HEB1_ANAVA : 105- 110: atstc GC-GksF kagdc HEB2_ANAVA : 105- 110: atdtc GC-GksF qagnc HESB_ANASP : 105- 110: atstc GC-GksF kgg HESB_PLEBO : 103- 108: atdtc GC-GqsF qagdc YADR_ECOLI : 41- 45: yitgg GCsG--F qygft YADR_ECOLI : 107- 112: akstc GC-GssF si YADR_HAEIN : 41- 45: yitgg GCsG--F qygft YADR_HAEIN : 107- 112: atstc GC-GssF si YFHF_ECOLI : 100- 105: vkdec GC-GesF hv YFHF_HAEIN : 100- 105: vkesc GC-GesF hv YNIS_BRAJA : 34- 38: mieag GCnG--F kykmg YNIU_RHOSH : 100- 105: akggc GC-GksF c S 19: 14.7294 10( 10) C-G-x(1,3)-G-x-[RS] Occurences: 10(10) HEB1_ANAVA : 104- 109: natst CGc--GkS fkagd HEB2_ANAVA : 104- 109: natdt CGc--GkS fqagn HESB_ANASP : 104- 109: natst CGc--GkS fkgg HESB_PLEBO : 102- 107: natdt CGc--GqS fqagd YADR_ECOLI : 106- 111: nakst CGc--GsS fsi YADR_HAEIN : 106- 111: natst CGc--GsS fsi YFHF_ECOLI : 99- 104: nvkde CGc--GeS fhv YFHF_HAEIN : 99- 104: nvkes CGc--GeS fhv YNIS_BRAJA : 101- 108: atncs CGksfGcR khvqa YNIU_RHOSH : 99- 104: nakgg CGc--GkS fc T 20: 12.5102 10( 10) G-x-S-F Occurences: 10(10) HEB1_ANAVA : 107- 110: stcgc GkSF kagdc HEB2_ANAVA : 107- 110: dtcgc GkSF qagnc HESB_ANASP : 107- 110: stcgc GkSF kgg HESB_PLEBO : 105- 108: dtcgc GqSF qagdc YADR_ECOLI : 109- 112: stcgc GsSF si YADR_HAEIN : 109- 112: stcgc GsSF si YFHF_ECOLI : 102- 105: decgc GeSF hv YFHF_HAEIN : 102- 105: escgc GeSF hv YNIS_BRAJA : 102- 105: tncsc GkSF gcrkh YNIU_RHOSH : 102- 105: ggcgc GkSF c Number of patterns evaluated by Pratt:436 Total running time: 1 seconds