------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 30 sequences from file G_PROTEIN_RECEP_F2_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 30 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename G_PROTEIN_RECEP_F2_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CALR_HUMAN 490 CALR_PIG 482 CLRA_RAT 479 CLRB_RAT 516 CRFR_HUMAN 444 CRFR_MOUSE 415 CRFR_RAT 415 DIHR_MANSE 395 GIPR_MESAU 462 GIPR_RAT 455 GLPR_HUMAN 463 GLPR_RAT 463 GLR_RAT 485 GRFR_HUMAN 423 GRFR_MOUSE 423 GRFR_PIG 451 GRFR_RAT 464 PACR_HUMAN 468 PACR_RAT 523 PTRR_DIDMA 585 PTRR_HUMAN 593 PTRR_MOUSE 591 PTRR_RAT 591 SCRC_RAT 449 VIPR_HUMAN 457 VIPR_RAT 459 VIPS_HUMAN 438 VIPS_MOUSE 437 VIPS_RAT 437 YOW3_CAEEL 522 Pratt run started at Thu Feb 6 19:45:25 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 23.0203 30( 30) Q-G-x(2)-V-x(3,5)-Y-x(1,3)-N-x(2)-V 2: 20.8503 30( 30) G-x(2)-V-x(4)-C-x(2)-N-x(2)-V 3: 18.8503 30( 30) G-x(2)-V-x(3,5)-Y-x(1,3)-N-x(2)-V 4: 16.6802 30( 30) Y-C-x(2)-N-x(2)-V 5: 16.6802 30( 30) V-x(4)-C-x(2)-N-x(2)-V 6: 15.6802 30( 30) C-x(2,3)-N-x-E-x(0,1)-V 7: 15.6802 30( 30) T-x(2,3)-L-x(1,2)-L-x-G 8: 15.1802 30( 30) T-x(2)-L-x(0,2)-L-x(1,2)-G 9: 15.1802 31( 30) V-x(3,4)-C-x(2)-N-x(0,2)-V 10: 15.1802 30( 30) N-x(2)-W-x(0,2)-L-x(4,5)-Y 11: 14.6802 33( 30) T-x(2)-L-x(0,2)-L-x(1,3)-G 12: 14.6802 50( 30) L-x(2)-A-x(1,3)-L-x(1,3)-L 13: 12.5102 39( 30) L-x(2)-L-x-G 14: 12.5102 71( 30) L-x(2)-L-L 15: 12.5102 80( 30) L-x-L-x(2)-L 16: 12.5102 30( 30) W-G-x-P 17: 12.5102 36( 30) G-W-x(2)-P 18: 12.5102 36( 30) E-x(2)-Y-L 19: 12.5102 32( 30) D-x(3)-C-W 20: 12.0102 32( 30) N-x-E-x(0,1)-V Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 38.2375 30( 30) G-[FLM]-x-V-[AS]-x-[FIL]-x-C-[FY]-x-N-x-[ES]-V-x(3)-[FILV] B 2: 31.3445 30( 30) Q-G-[FLM]-x-V-x(3,5)-Y-x(1,3)-N-x-[ES]-V-x(3)-[FILV] C 3: 31.1904 30( 30) V-[AS]-x-[FIL]-x-C-[FY]-x-N-x-[ES]-V-x(3)-[FILV] D 4: 28.4674 30( 30) Q-G-x(2)-V-x(3,5)-Y-x(1,3)-N-x-[ES]-V-x(3)-[FILV] E 5: 27.1744 30( 30) G-[FLM]-x-V-x(3,5)-Y-x(1,3)-N-x-[ES]-V-x(3)-[FILV] F 6: 21.7274 30( 30) Q-G-[FLM]-x-V-x(3,5)-Y-x(1,3)-N G 7: 21.5122 30( 30) E-[AG]-x-Y-L-x(2)-[AL]-[ILV] H 8: 20.6212 30( 30) V-x(3,4)-C-[FY]-x-N-x(0,2)-V-x(3)-[FILV] I 9: 20.3429 30( 30) T-x(2)-L-x(0,2)-L-x(1,3)-G-x(4)-[ILMV]-[FL] J 10: 19.0505 30( 30) L-x-[GIPV]-L-x-G-x(4)-[FILMV]-[FILV] K 11: 18.8503 30( 30) Q-G-x(2)-V-x(3,5)-Y-x(1,3)-N L 12: 17.8420 30( 30) N-x(2)-W-x(0,2)-L-x(4,5)-Y-x(4)-[ILV] M 13: 17.5573 30( 30) G-[FLM]-x-V-x(3,5)-Y-x(1,3)-N N 14: 16.6802 30( 30) Y-C-x(2)-N-x(2)-V O 15: 15.6802 30( 30) C-x(2,3)-N-x-E-x(0,1)-V P 16: 15.6802 30( 30) T-x(2,3)-L-x(1,2)-L-x-G Q 17: 15.1802 30( 30) T-x(2)-L-x(0,2)-L-x(1,2)-G R 18: 15.1035 36( 30) G-W-[AGS]-x-P S 19: 14.7666 59( 30) L-x-L-x(2)-L-[FILV] T 20: 14.6802 50( 30) L-x(2)-A-x(1,3)-L-x(1,3)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 38.2375 30( 30) G-[FLM]-x-V-[AS]-x-[FIL]-x-C-[FY]-x-N-x-[ES]-V-x(3)-[FILV] Occurences: 30(30) CALR_HUMAN : 400- 418: lihfq GFfVAtIyCFcNnEVqttV krqwa CALR_PIG : 385- 403: lihfq GFfVAiIyCFcNhEVqgaL krqwn CLRA_RAT : 384- 402: lihfq GFfVAtIyCFcNhEVqvtL krqwa CLRB_RAT : 421- 439: lihfq GFfVAtIyCFcNhEVqvtL krqwa CRFR_HUMAN : 385- 403: lesfq GFfVSvFyCFlNsEVrsaI rkrwh CRFR_MOUSE : 356- 374: lesfq GFfVSvFyCFlNsEVrsaI rkrwr CRFR_RAT : 356- 374: lesfq GFfVSvFyCFlNsEVrsaI rkrwr DIHR_MANSE : 337- 355: mlstq GFtVAlFyCFmNtEVrhaI ryhve GIPR_MESAU : 382- 400: lssfq GFlVSvLyCFiNkEVqseI rrswr GIPR_RAT : 382- 400: lssfq GFlVSvLyCFiNkEVqseI rrlrl GLPR_HUMAN : 395- 413: ftsfq GLmVAiLyCFvNnEVqleF rkswe GLPR_RAT : 395- 413: ftsfq GFmVAvLyCFvNnEVqmeF rkswe GLR_RAT : 394- 412: fssfq GLlVAvLyCFlNkEVqaeL lrrwr GRFR_HUMAN : 369- 387: lgsfq GFiVAiLyCFlNqEVrteI srkwh GRFR_MOUSE : 369- 387: lgsfq GFiVAvLyCFlNqEVrteI srkwy GRFR_PIG : 369- 387: lgsfq GFiVAiLyCFlNqEVrteI srrwh GRFR_RAT : 410- 428: lgsfq GFvVAvLyCFlNqEVrteI srkwy PACR_HUMAN : 393- 411: lgsfq GFvVAvLyCFlNgEVqaeI krkwr PACR_RAT : 448- 466: lgsfq GFvVAvLyCFlNgEVqaeI krkwr PTRR_DIDMA : 446- 464: fnsfq GFfVAiIyCFcNgEVqaeI kksws PTRR_HUMAN : 452- 470: fnsfq GFfVAiIyCFcNgEVqaeI kksws PTRR_MOUSE : 452- 470: fnsfq GFfVAiIyCFcNgEVqaeI rksws PTRR_RAT : 452- 470: fnsfq GFfVAiIyCFcNgEVqaeI rksws SCRC_RAT : 381- 399: lgsfq GLvVAvLyCFlNgEVqleV qkkwr VIPR_HUMAN : 381- 399: vgsfq GFvVAiLyCFlNgEVqaeL rrkwr VIPR_RAT : 383- 401: vgsfq GFvVAiLyCFlNgEVqaeL rrkwr VIPS_HUMAN : 368- 386: lgsfq GLvVAvLyCFlNsEVqceL krkwr VIPS_MOUSE : 367- 385: vgsfq GLvVAvLyCFlNsEVqceL krrwr VIPS_RAT : 367- 385: vgsfq GLvVAvLyCFlNsEVqceL krrwr YOW3_CAEEL : 463- 481: lnglq GMfVSfIvCYtNrSVvecV lkfws B 2: 31.3445 30( 30) Q-G-[FLM]-x-V-x(3,5)-Y-x(1,3)-N-x-[ES]-V-x(3)-[FILV] Occurences: 30(30) CALR_HUMAN : 399- 418: slihf QGFfVati--YcfcNnEVqttV krqwa CALR_PIG : 384- 403: slihf QGFfVaii--YcfcNhEVqgaL krqwn CLRA_RAT : 383- 402: slihf QGFfVati--YcfcNhEVqvtL krqwa CLRB_RAT : 420- 439: slihf QGFfVati--YcfcNhEVqvtL krqwa CRFR_HUMAN : 384- 403: flesf QGFfVsvf--YcflNsEVrsaI rkrwh CRFR_MOUSE : 355- 374: flesf QGFfVsvf--YcflNsEVrsaI rkrwr CRFR_RAT : 355- 374: flesf QGFfVsvf--YcflNsEVrsaI rkrwr DIHR_MANSE : 336- 355: lmlst QGFtValf--YcfmNtEVrhaI ryhve GIPR_MESAU : 381- 400: flssf QGFlVsvl--YcfiNkEVqseI rrswr GIPR_RAT : 381- 400: flssf QGFlVsvl--YcfiNkEVqseI rrlrl GLPR_HUMAN : 394- 413: sftsf QGLmVail--YcfvNnEVqleF rkswe GLPR_RAT : 394- 413: sftsf QGFmVavl--YcfvNnEVqmeF rkswe GLR_RAT : 393- 412: ffssf QGLlVavl--YcflNkEVqaeL lrrwr GRFR_HUMAN : 368- 387: glgsf QGFiVail--YcflNqEVrteI srkwh GRFR_MOUSE : 368- 387: glgsf QGFiVavl--YcflNqEVrteI srkwy GRFR_PIG : 368- 387: glgsf QGFiVail--YcflNqEVrteI srrwh GRFR_RAT : 409- 428: glgsf QGFvVavl--YcflNqEVrteI srkwy PACR_HUMAN : 392- 411: glgsf QGFvVavl--YcflNgEVqaeI krkwr PACR_RAT : 447- 466: glgsf QGFvVavl--YcflNgEVqaeI krkwr PTRR_DIDMA : 445- 464: lfnsf QGFfVaii--YcfcNgEVqaeI kksws PTRR_HUMAN : 451- 470: lfnsf QGFfVaii--YcfcNgEVqaeI kksws PTRR_MOUSE : 451- 470: lfnsf QGFfVaii--YcfcNgEVqaeI rksws PTRR_RAT : 451- 470: lfnsf QGFfVaii--YcfcNgEVqaeI rksws SCRC_RAT : 380- 399: algsf QGLvVavl--YcflNgEVqleV qkkwr VIPR_HUMAN : 380- 399: vvgsf QGFvVail--YcflNgEVqaeL rrkwr VIPR_RAT : 382- 401: vvgsf QGFvVail--YcflNgEVqaeL rrkwr VIPS_HUMAN : 367- 386: clgsf QGLvVavl--YcflNsEVqceL krkwr VIPS_MOUSE : 366- 385: cvgsf QGLvVavl--YcflNsEVqceL krrwr VIPS_RAT : 366- 385: cvgsf QGLvVavl--YcflNsEVqceL krrwr YOW3_CAEEL : 462- 481: slngl QGMfVsfivcYt--NrSVvecV lkfws C 3: 31.1904 30( 30) V-[AS]-x-[FIL]-x-C-[FY]-x-N-x-[ES]-V-x(3)-[FILV] Occurences: 30(30) CALR_HUMAN : 403- 418: fqgff VAtIyCFcNnEVqttV krqwa CALR_PIG : 388- 403: fqgff VAiIyCFcNhEVqgaL krqwn CLRA_RAT : 387- 402: fqgff VAtIyCFcNhEVqvtL krqwa CLRB_RAT : 424- 439: fqgff VAtIyCFcNhEVqvtL krqwa CRFR_HUMAN : 388- 403: fqgff VSvFyCFlNsEVrsaI rkrwh CRFR_MOUSE : 359- 374: fqgff VSvFyCFlNsEVrsaI rkrwr CRFR_RAT : 359- 374: fqgff VSvFyCFlNsEVrsaI rkrwr DIHR_MANSE : 340- 355: tqgft VAlFyCFmNtEVrhaI ryhve GIPR_MESAU : 385- 400: fqgfl VSvLyCFiNkEVqseI rrswr GIPR_RAT : 385- 400: fqgfl VSvLyCFiNkEVqseI rrlrl GLPR_HUMAN : 398- 413: fqglm VAiLyCFvNnEVqleF rkswe GLPR_RAT : 398- 413: fqgfm VAvLyCFvNnEVqmeF rkswe GLR_RAT : 397- 412: fqgll VAvLyCFlNkEVqaeL lrrwr GRFR_HUMAN : 372- 387: fqgfi VAiLyCFlNqEVrteI srkwh GRFR_MOUSE : 372- 387: fqgfi VAvLyCFlNqEVrteI srkwy GRFR_PIG : 372- 387: fqgfi VAiLyCFlNqEVrteI srrwh GRFR_RAT : 413- 428: fqgfv VAvLyCFlNqEVrteI srkwy PACR_HUMAN : 396- 411: fqgfv VAvLyCFlNgEVqaeI krkwr PACR_RAT : 451- 466: fqgfv VAvLyCFlNgEVqaeI krkwr PTRR_DIDMA : 449- 464: fqgff VAiIyCFcNgEVqaeI kksws PTRR_HUMAN : 455- 470: fqgff VAiIyCFcNgEVqaeI kksws PTRR_MOUSE : 455- 470: fqgff VAiIyCFcNgEVqaeI rksws PTRR_RAT : 455- 470: fqgff VAiIyCFcNgEVqaeI rksws SCRC_RAT : 384- 399: fqglv VAvLyCFlNgEVqleV qkkwr VIPR_HUMAN : 384- 399: fqgfv VAiLyCFlNgEVqaeL rrkwr VIPR_RAT : 386- 401: fqgfv VAiLyCFlNgEVqaeL rrkwr VIPS_HUMAN : 371- 386: fqglv VAvLyCFlNsEVqceL krkwr VIPS_MOUSE : 370- 385: fqglv VAvLyCFlNsEVqceL krrwr VIPS_RAT : 370- 385: fqglv VAvLyCFlNsEVqceL krrwr YOW3_CAEEL : 466- 481: lqgmf VSfIvCYtNrSVvecV lkfws D 4: 28.4674 30( 30) Q-G-x(2)-V-x(3,5)-Y-x(1,3)-N-x-[ES]-V-x(3)-[FILV] Occurences: 30(30) CALR_HUMAN : 399- 418: slihf QGffVati--YcfcNnEVqttV krqwa CALR_PIG : 384- 403: slihf QGffVaii--YcfcNhEVqgaL krqwn CLRA_RAT : 383- 402: slihf QGffVati--YcfcNhEVqvtL krqwa CLRB_RAT : 420- 439: slihf QGffVati--YcfcNhEVqvtL krqwa CRFR_HUMAN : 384- 403: flesf QGffVsvf--YcflNsEVrsaI rkrwh CRFR_MOUSE : 355- 374: flesf QGffVsvf--YcflNsEVrsaI rkrwr CRFR_RAT : 355- 374: flesf QGffVsvf--YcflNsEVrsaI rkrwr DIHR_MANSE : 336- 355: lmlst QGftValf--YcfmNtEVrhaI ryhve GIPR_MESAU : 381- 400: flssf QGflVsvl--YcfiNkEVqseI rrswr GIPR_RAT : 381- 400: flssf QGflVsvl--YcfiNkEVqseI rrlrl GLPR_HUMAN : 394- 413: sftsf QGlmVail--YcfvNnEVqleF rkswe GLPR_RAT : 394- 413: sftsf QGfmVavl--YcfvNnEVqmeF rkswe GLR_RAT : 393- 412: ffssf QGllVavl--YcflNkEVqaeL lrrwr GRFR_HUMAN : 368- 387: glgsf QGfiVail--YcflNqEVrteI srkwh GRFR_MOUSE : 368- 387: glgsf QGfiVavl--YcflNqEVrteI srkwy GRFR_PIG : 368- 387: glgsf QGfiVail--YcflNqEVrteI srrwh GRFR_RAT : 409- 428: glgsf QGfvVavl--YcflNqEVrteI srkwy PACR_HUMAN : 392- 411: glgsf QGfvVavl--YcflNgEVqaeI krkwr PACR_RAT : 447- 466: glgsf QGfvVavl--YcflNgEVqaeI krkwr PTRR_DIDMA : 445- 464: lfnsf QGffVaii--YcfcNgEVqaeI kksws PTRR_HUMAN : 451- 470: lfnsf QGffVaii--YcfcNgEVqaeI kksws PTRR_MOUSE : 451- 470: lfnsf QGffVaii--YcfcNgEVqaeI rksws PTRR_RAT : 451- 470: lfnsf QGffVaii--YcfcNgEVqaeI rksws SCRC_RAT : 380- 399: algsf QGlvVavl--YcflNgEVqleV qkkwr VIPR_HUMAN : 380- 399: vvgsf QGfvVail--YcflNgEVqaeL rrkwr VIPR_RAT : 382- 401: vvgsf QGfvVail--YcflNgEVqaeL rrkwr VIPS_HUMAN : 367- 386: clgsf QGlvVavl--YcflNsEVqceL krkwr VIPS_MOUSE : 366- 385: cvgsf QGlvVavl--YcflNsEVqceL krrwr VIPS_RAT : 366- 385: cvgsf QGlvVavl--YcflNsEVqceL krrwr YOW3_CAEEL : 462- 481: slngl QGmfVsfivcYt--NrSVvecV lkfws E 5: 27.1744 30( 30) G-[FLM]-x-V-x(3,5)-Y-x(1,3)-N-x-[ES]-V-x(3)-[FILV] Occurences: 30(30) CALR_HUMAN : 400- 418: lihfq GFfVati--YcfcNnEVqttV krqwa CALR_PIG : 385- 403: lihfq GFfVaii--YcfcNhEVqgaL krqwn CLRA_RAT : 384- 402: lihfq GFfVati--YcfcNhEVqvtL krqwa CLRB_RAT : 421- 439: lihfq GFfVati--YcfcNhEVqvtL krqwa CRFR_HUMAN : 385- 403: lesfq GFfVsvf--YcflNsEVrsaI rkrwh CRFR_MOUSE : 356- 374: lesfq GFfVsvf--YcflNsEVrsaI rkrwr CRFR_RAT : 356- 374: lesfq GFfVsvf--YcflNsEVrsaI rkrwr DIHR_MANSE : 337- 355: mlstq GFtValf--YcfmNtEVrhaI ryhve GIPR_MESAU : 382- 400: lssfq GFlVsvl--YcfiNkEVqseI rrswr GIPR_RAT : 382- 400: lssfq GFlVsvl--YcfiNkEVqseI rrlrl GLPR_HUMAN : 395- 413: ftsfq GLmVail--YcfvNnEVqleF rkswe GLPR_RAT : 395- 413: ftsfq GFmVavl--YcfvNnEVqmeF rkswe GLR_RAT : 394- 412: fssfq GLlVavl--YcflNkEVqaeL lrrwr GRFR_HUMAN : 369- 387: lgsfq GFiVail--YcflNqEVrteI srkwh GRFR_MOUSE : 369- 387: lgsfq GFiVavl--YcflNqEVrteI srkwy GRFR_PIG : 369- 387: lgsfq GFiVail--YcflNqEVrteI srrwh GRFR_RAT : 410- 428: lgsfq GFvVavl--YcflNqEVrteI srkwy PACR_HUMAN : 393- 411: lgsfq GFvVavl--YcflNgEVqaeI krkwr PACR_RAT : 448- 466: lgsfq GFvVavl--YcflNgEVqaeI krkwr PTRR_DIDMA : 446- 464: fnsfq GFfVaii--YcfcNgEVqaeI kksws PTRR_HUMAN : 452- 470: fnsfq GFfVaii--YcfcNgEVqaeI kksws PTRR_MOUSE : 452- 470: fnsfq GFfVaii--YcfcNgEVqaeI rksws PTRR_RAT : 452- 470: fnsfq GFfVaii--YcfcNgEVqaeI rksws SCRC_RAT : 381- 399: lgsfq GLvVavl--YcflNgEVqleV qkkwr VIPR_HUMAN : 381- 399: vgsfq GFvVail--YcflNgEVqaeL rrkwr VIPR_RAT : 383- 401: vgsfq GFvVail--YcflNgEVqaeL rrkwr VIPS_HUMAN : 368- 386: lgsfq GLvVavl--YcflNsEVqceL krkwr VIPS_MOUSE : 367- 385: vgsfq GLvVavl--YcflNsEVqceL krrwr VIPS_RAT : 367- 385: vgsfq GLvVavl--YcflNsEVqceL krrwr YOW3_CAEEL : 463- 481: lnglq GMfVsfivcYt--NrSVvecV lkfws F 6: 21.7274 30( 30) Q-G-[FLM]-x-V-x(3,5)-Y-x(1,3)-N Occurences: 30(30) CALR_HUMAN : 399- 411: slihf QGFfVati--YcfcN nevqt CALR_PIG : 384- 396: slihf QGFfVaii--YcfcN hevqg CLRA_RAT : 383- 395: slihf QGFfVati--YcfcN hevqv CLRB_RAT : 420- 432: slihf QGFfVati--YcfcN hevqv CRFR_HUMAN : 384- 396: flesf QGFfVsvf--YcflN sevrs CRFR_MOUSE : 355- 367: flesf QGFfVsvf--YcflN sevrs CRFR_RAT : 355- 367: flesf QGFfVsvf--YcflN sevrs DIHR_MANSE : 336- 348: lmlst QGFtValf--YcfmN tevrh GIPR_MESAU : 381- 393: flssf QGFlVsvl--YcfiN kevqs GIPR_RAT : 381- 393: flssf QGFlVsvl--YcfiN kevqs GLPR_HUMAN : 394- 406: sftsf QGLmVail--YcfvN nevql GLPR_RAT : 394- 406: sftsf QGFmVavl--YcfvN nevqm GLR_RAT : 393- 405: ffssf QGLlVavl--YcflN kevqa GRFR_HUMAN : 368- 380: glgsf QGFiVail--YcflN qevrt GRFR_MOUSE : 368- 380: glgsf QGFiVavl--YcflN qevrt GRFR_PIG : 368- 380: glgsf QGFiVail--YcflN qevrt GRFR_RAT : 409- 421: glgsf QGFvVavl--YcflN qevrt PACR_HUMAN : 392- 404: glgsf QGFvVavl--YcflN gevqa PACR_RAT : 447- 459: glgsf QGFvVavl--YcflN gevqa PTRR_DIDMA : 445- 457: lfnsf QGFfVaii--YcfcN gevqa PTRR_HUMAN : 451- 463: lfnsf QGFfVaii--YcfcN gevqa PTRR_MOUSE : 451- 463: lfnsf QGFfVaii--YcfcN gevqa PTRR_RAT : 451- 463: lfnsf QGFfVaii--YcfcN gevqa SCRC_RAT : 380- 392: algsf QGLvVavl--YcflN gevql VIPR_HUMAN : 380- 392: vvgsf QGFvVail--YcflN gevqa VIPR_RAT : 382- 394: vvgsf QGFvVail--YcflN gevqa VIPS_HUMAN : 367- 379: clgsf QGLvVavl--YcflN sevqc VIPS_MOUSE : 366- 378: cvgsf QGLvVavl--YcflN sevqc VIPS_RAT : 366- 378: cvgsf QGLvVavl--YcflN sevqc YOW3_CAEEL : 462- 474: slngl QGMfVsfivcYt--N rsvve G 7: 21.5122 30( 30) E-[AG]-x-Y-L-x(2)-[AL]-[ILV] Occurences: 30(30) CALR_HUMAN : 256- 264: fwmlc EGiYLhtLI vvavf CALR_PIG : 241- 249: fwmlc EGvYLhtLI vvsvf CLRA_RAT : 240- 248: fwmlc EGiYLhtLI vmavf CLRB_RAT : 277- 285: fwmlc EGiYLhtLI vmavf CRFR_HUMAN : 238- 246: fwmfg EGcYLhtAI vltys CRFR_MOUSE : 209- 217: fwmfg EGcYLhtAI vltys CRFR_RAT : 209- 217: fwmfg EGcYLhtAI vltys DIHR_MANSE : 177- 185: fwmlv EGlYLymLV vetft GIPR_MESAU : 234- 242: twllv EGvYLhhLL vivgg GIPR_RAT : 234- 242: twllv EGvYLhhLL vvvrr GLPR_HUMAN : 247- 255: ywllv EGvYLytLL afsvf GLPR_RAT : 247- 255: ywllv EGvYLytLL afsvf GLR_RAT : 246- 254: cwllv EGvYLysLL sittf GRFR_HUMAN : 223- 231: swlla EAvYLncLL astsp GRFR_MOUSE : 223- 231: swlla EAvYLscLL astsp GRFR_PIG : 223- 231: swlla EAvYLtcLL astsp GRFR_RAT : 223- 231: swlla EAvYLscLL astsp PACR_HUMAN : 247- 255: fwlfi EGlYLftLL vetff PACR_RAT : 246- 254: fwlfi EGlYLftLL vetff PTRR_DIDMA : 296- 304: ywilv EGlYLhsLI fmaff PTRR_HUMAN : 302- 310: ywilv EGlYLhsLI fmaff PTRR_MOUSE : 302- 310: ywilv EGlYLhsLI fmaff PTRR_RAT : 302- 310: ywilv EGlYLhsLI fmaff SCRC_RAT : 236- 244: awllv EGlYLhtLL aisff VIPR_HUMAN : 236- 244: fwllv EGlYLytLL avsff VIPR_RAT : 237- 245: fwllv EGlYLytLL avsff VIPS_HUMAN : 223- 231: fwllv EGlYLhtLL vamlp VIPS_MOUSE : 222- 230: ywllv EGlYLhtLL vailp VIPS_RAT : 222- 230: ywllv EGlYLhtLL vailp YOW3_CAEEL : 320- 328: twmla EAvYLwrLL htaqh H 8: 20.6212 30( 30) V-x(3,4)-C-[FY]-x-N-x(0,2)-V-x(3)-[FILV] Occurences: 30(30) CALR_HUMAN : 403- 418: fqgff VatiyCFcNneVqttV krqwa CALR_PIG : 388- 403: fqgff VaiiyCFcNheVqgaL krqwn CLRA_RAT : 387- 402: fqgff VatiyCFcNheVqvtL krqwa CLRB_RAT : 424- 439: fqgff VatiyCFcNheVqvtL krqwa CRFR_HUMAN : 388- 403: fqgff VsvfyCFlNseVrsaI rkrwh CRFR_MOUSE : 359- 374: fqgff VsvfyCFlNseVrsaI rkrwr CRFR_RAT : 359- 374: fqgff VsvfyCFlNseVrsaI rkrwr DIHR_MANSE : 340- 355: tqgft ValfyCFmNteVrhaI ryhve GIPR_MESAU : 385- 400: fqgfl VsvlyCFiNkeVqseI rrswr GIPR_RAT : 385- 400: fqgfl VsvlyCFiNkeVqseI rrlrl GLPR_HUMAN : 398- 413: fqglm VailyCFvNneVqleF rkswe GLPR_RAT : 398- 413: fqgfm VavlyCFvNneVqmeF rkswe GLR_RAT : 397- 412: fqgll VavlyCFlNkeVqaeL lrrwr GRFR_HUMAN : 372- 387: fqgfi VailyCFlNqeVrteI srkwh GRFR_MOUSE : 372- 387: fqgfi VavlyCFlNqeVrteI srkwy GRFR_PIG : 372- 387: fqgfi VailyCFlNqeVrteI srrwh GRFR_RAT : 413- 428: fqgfv VavlyCFlNqeVrteI srkwy PACR_HUMAN : 396- 411: fqgfv VavlyCFlNgeVqaeI krkwr PACR_RAT : 451- 466: fqgfv VavlyCFlNgeVqaeI krkwr PTRR_DIDMA : 449- 464: fqgff VaiiyCFcNgeVqaeI kksws PTRR_HUMAN : 455- 470: fqgff VaiiyCFcNgeVqaeI kksws PTRR_MOUSE : 455- 470: fqgff VaiiyCFcNgeVqaeI rksws PTRR_RAT : 455- 470: fqgff VaiiyCFcNgeVqaeI rksws SCRC_RAT : 384- 399: fqglv VavlyCFlNgeVqleV qkkwr VIPR_HUMAN : 384- 399: fqgfv VailyCFlNgeVqaeL rrkwr VIPR_RAT : 386- 401: fqgfv VailyCFlNgeVqaeL rrkwr VIPS_HUMAN : 371- 386: fqglv VavlyCFlNseVqceL krkwr VIPS_MOUSE : 370- 385: fqglv VavlyCFlNseVqceL krrwr VIPS_RAT : 370- 385: fqglv VavlyCFlNseVqceL krrwr YOW3_CAEEL : 466- 481: lqgmf VsfivCYtNrsVvecV lkfws I 9: 20.3429 30( 30) T-x(2)-L-x(0,2)-L-x(1,3)-G-x(4)-[ILMV]-[FL] Occurences: 30(30) CALR_HUMAN : 361- 375: kavka TmiLvpLl--GiqfvVF pwrps CALR_PIG : 346- 360: kavra TliLvpLl--GvqfvVL pwrps CLRA_RAT : 345- 359: kavka TmvLvpLl--GiqfvVF pwrps CLRB_RAT : 382- 396: kavka TmvLvpLl--GiqfvVF pwrps CRFR_HUMAN : 345- 359: kavka TlvLlpLl--GitymLF fvnpg CRFR_HUMAN : 345- 359: kavka TlvL--LpllGitymLF fvnpg CRFR_MOUSE : 316- 330: kavka TlvLlpLl--GitymLF fvnpg CRFR_MOUSE : 316- 330: kavka TlvL--LpllGitymLF fvnpg CRFR_RAT : 316- 330: kavka TlvLlpLl--GitymLF fvnpg CRFR_RAT : 316- 330: kavka TlvL--LpllGitymLF fvnpg DIHR_MANSE : 328- 343: yafdy TraLm-LstqGftvaLF ycfmn GIPR_MESAU : 340- 354: rlars TltLvpLl--GvhevVF apvte GIPR_RAT : 340- 354: rlars TltLmpLl--GvhevVF apvte GLPR_HUMAN : 353- 367: rlaks TltLipLl--GthevIF afvmd GLPR_RAT : 353- 367: rlaks TltLipLl--GthevIF afvmd GLR_RAT : 352- 366: rlars TltLipLl--GvhevVF afvtd GRFR_HUMAN : 331- 345: rlsks TlfLipLf--GihyiIF nflpd GRFR_MOUSE : 331- 345: rlsks TllLipLf--GihyiIF nflpd GRFR_PIG : 331- 345: rlsks TllLipLf--GihyvIF nflpd GRFR_RAT : 372- 386: rlsks TllLipLf--GihyiIF nflpd PACR_HUMAN : 355- 369: rlars TllLipLf--GihytVF afspe PACR_RAT : 410- 424: rlars TllLipLf--GihytVF afspe PTRR_DIDMA : 404- 418: kllks TlvLmpLf--GvhyiVF matpy PTRR_HUMAN : 410- 424: kllks TlvLmpLf--GvhyiVF matpy PTRR_MOUSE : 410- 424: kllrs TlvLvpLf--GvhytVF malpy PTRR_RAT : 410- 424: kllrs TlvLvpLf--GvhytVF malpy SCRC_RAT : 344- 358: rlaks TllLipLf--GihyiVF afspe VIPR_HUMAN : 343- 357: rlars TllLipLf--GvhyiMF affpd VIPR_RAT : 345- 359: rlaks TllLipLf--GihyvMF affpd VIPS_HUMAN : 330- 344: rlaks TllLipLf--GvhymVF avfpi VIPS_MOUSE : 329- 343: rlaks TllLipLf--GvhymVF aafpi VIPS_RAT : 329- 343: rlaks TllLipLf--GvhymVF aafpi YOW3_CAEEL : 386- 399: ewmii TpsL--Lam-GvnllLL glivy J 10: 19.0505 30( 30) L-x-[GIPV]-L-x-G-x(4)-[FILMV]-[FILV] Occurences: 30(30) CALR_HUMAN : 364- 375: katmi LvPLlGiqfvVF pwrps CALR_PIG : 349- 360: ratli LvPLlGvqfvVL pwrps CLRA_RAT : 348- 359: katmv LvPLlGiqfvVF pwrps CLRB_RAT : 385- 396: katmv LvPLlGiqfvVF pwrps CRFR_HUMAN : 348- 359: katlv LlPLlGitymLF fvnpg CRFR_MOUSE : 319- 330: katlv LlPLlGitymLF fvnpg CRFR_RAT : 319- 330: katlv LlPLlGitymLF fvnpg DIHR_MANSE : 300- 311: kallv LiPLlGitnlLV lcgps GIPR_MESAU : 343- 354: rstlt LvPLlGvhevVF apvte GIPR_RAT : 343- 354: rstlt LmPLlGvhevVF apvte GLPR_HUMAN : 356- 367: kstlt LiPLlGthevIF afvmd GLPR_RAT : 356- 367: kstlt LiPLlGthevIF afvmd GLR_RAT : 355- 366: rstlt LiPLlGvhevVF afvtd GRFR_HUMAN : 334- 345: kstlf LiPLfGihyiIF nflpd GRFR_MOUSE : 334- 345: kstll LiPLfGihyiIF nflpd GRFR_PIG : 334- 345: kstll LiPLfGihyvIF nflpd GRFR_RAT : 375- 386: kstll LiPLfGihyiIF nflpd PACR_HUMAN : 358- 369: rstll LiPLfGihytVF afspe PACR_RAT : 413- 424: rstll LiPLfGihytVF afspe PTRR_DIDMA : 407- 418: kstlv LmPLfGvhyiVF matpy PTRR_HUMAN : 413- 424: kstlv LmPLfGvhyiVF matpy PTRR_MOUSE : 413- 424: rstlv LvPLfGvhytVF malpy PTRR_RAT : 413- 424: rstlv LvPLfGvhytVF malpy SCRC_RAT : 347- 358: kstll LiPLfGihyiVF afspe VIPR_HUMAN : 346- 357: rstll LiPLfGvhyiMF affpd VIPR_RAT : 348- 359: kstll LiPLfGihyvMF affpd VIPS_HUMAN : 333- 344: kstll LiPLfGvhymVF avfpi VIPS_MOUSE : 332- 343: kstll LiPLfGvhymVF aafpi VIPS_RAT : 332- 343: kstll LiPLfGvhymVF aafpi YOW3_CAEEL : 458- 469: vtdqs LnGLqGmfvsFI vcytn K 11: 18.8503 30( 30) Q-G-x(2)-V-x(3,5)-Y-x(1,3)-N Occurences: 30(30) CALR_HUMAN : 399- 411: slihf QGffVati--YcfcN nevqt CALR_PIG : 384- 396: slihf QGffVaii--YcfcN hevqg CLRA_RAT : 383- 395: slihf QGffVati--YcfcN hevqv CLRB_RAT : 420- 432: slihf QGffVati--YcfcN hevqv CRFR_HUMAN : 384- 396: flesf QGffVsvf--YcflN sevrs CRFR_MOUSE : 355- 367: flesf QGffVsvf--YcflN sevrs CRFR_RAT : 355- 367: flesf QGffVsvf--YcflN sevrs DIHR_MANSE : 336- 348: lmlst QGftValf--YcfmN tevrh GIPR_MESAU : 381- 393: flssf QGflVsvl--YcfiN kevqs GIPR_RAT : 381- 393: flssf QGflVsvl--YcfiN kevqs GLPR_HUMAN : 394- 406: sftsf QGlmVail--YcfvN nevql GLPR_RAT : 394- 406: sftsf QGfmVavl--YcfvN nevqm GLR_RAT : 393- 405: ffssf QGllVavl--YcflN kevqa GRFR_HUMAN : 368- 380: glgsf QGfiVail--YcflN qevrt GRFR_MOUSE : 368- 380: glgsf QGfiVavl--YcflN qevrt GRFR_PIG : 368- 380: glgsf QGfiVail--YcflN qevrt GRFR_RAT : 409- 421: glgsf QGfvVavl--YcflN qevrt PACR_HUMAN : 392- 404: glgsf QGfvVavl--YcflN gevqa PACR_RAT : 447- 459: glgsf QGfvVavl--YcflN gevqa PTRR_DIDMA : 445- 457: lfnsf QGffVaii--YcfcN gevqa PTRR_HUMAN : 451- 463: lfnsf QGffVaii--YcfcN gevqa PTRR_MOUSE : 451- 463: lfnsf QGffVaii--YcfcN gevqa PTRR_RAT : 451- 463: lfnsf QGffVaii--YcfcN gevqa SCRC_RAT : 380- 392: algsf QGlvVavl--YcflN gevql VIPR_HUMAN : 380- 392: vvgsf QGfvVail--YcflN gevqa VIPR_RAT : 382- 394: vvgsf QGfvVail--YcflN gevqa VIPS_HUMAN : 367- 379: clgsf QGlvVavl--YcflN sevqc VIPS_MOUSE : 366- 378: cvgsf QGlvVavl--YcflN sevqc VIPS_RAT : 366- 378: cvgsf QGlvVavl--YcflN sevqc YOW3_CAEEL : 462- 474: slngl QGmfVsfivcYt--N rsvve L 12: 17.8420 30( 30) N-x(2)-W-x(0,2)-L-x(4,5)-Y-x(4)-[ILV] Occurences: 30(30) CALR_HUMAN : 249- 264: ymmac NyfWm-Lcegi-YlhtlI vvavf CALR_PIG : 234- 249: ymmsc NyfWm-Lcegv-YlhtlI vvsvf CLRA_RAT : 233- 248: ymmac NyfWm-Lcegi-YlhtlI vmavf CLRB_RAT : 270- 285: ymmac NyfWm-Lcegi-YlhtlI vmavf CRFR_HUMAN : 213- 229: evhqs NvgWcrLvtaa-YnyfhV tnffw CRFR_MOUSE : 184- 200: evhqs NvaWcrLvtaa-YnyfhV tnffw CRFR_RAT : 184- 200: evhqs NvaWcrLvtaa-YnyfhV tnffw DIHR_MANSE : 170- 185: yfylt NffWm-Lvegl-YlymlV vetft GIPR_MESAU : 227- 242: ycvga NytWl-Lvegv-YlhhlL vivgg GIPR_MESAU : 227- 242: ycvga NytW--LlvegvYlhhlL vivgg GIPR_RAT : 227- 242: ycvga NytWl-Lvegv-YlhhlL vvvrr GIPR_RAT : 227- 242: ycvga NytW--LlvegvYlhhlL vvvrr GLPR_HUMAN : 240- 255: ycvaa NyyWl-Lvegv-YlytlL afsvf GLPR_HUMAN : 240- 255: ycvaa NyyW--LlvegvYlytlL afsvf GLPR_RAT : 240- 255: ycvaa NyyWl-Lvegv-YlytlL afsvf GLPR_RAT : 240- 255: ycvaa NyyW--LlvegvYlytlL afsvf GLR_RAT : 239- 254: ygiia NycWl-Lvegv-YlyslL sittf GLR_RAT : 239- 254: ygiia NycW--LlvegvYlyslL sittf GRFR_HUMAN : 216- 231: fatmt NfsWl-Laeav-YlnclL astsp GRFR_HUMAN : 216- 231: fatmt NfsW--LlaeavYlnclL astsp GRFR_MOUSE : 216- 231: latmt NfsWl-Laeav-YlsclL astsp GRFR_MOUSE : 216- 231: latmt NfsW--LlaeavYlsclL astsp GRFR_PIG : 216- 231: fatmt NfsWl-Laeav-YltclL astsp GRFR_PIG : 216- 231: fatmt NfsW--LlaeavYltclL astsp GRFR_RAT : 216- 231: fatmt NfsWl-Laeav-YlsclL astsp GRFR_RAT : 216- 231: fatmt NfsW--LlaeavYlsclL astsp PACR_HUMAN : 240- 255: ycvvs NyfW--LfieglYlftlL vetff PACR_RAT : 239- 254: ycvvs NyfW--LfieglYlftlL vetff PTRR_DIDMA : 289- 304: yfltt NyyWi-Lvegl-YlhslI fmaff PTRR_HUMAN : 295- 310: yflat NyyWi-Lvegl-YlhslI fmaff PTRR_MOUSE : 295- 310: yflat NyyWi-Lvegl-YlhslI fmaff PTRR_RAT : 295- 310: yflat NyyWi-Lvegl-YlhslI fmaff SCRC_RAT : 229- 244: ycima NyaWl-Lvegl-YlhtlL aisff SCRC_RAT : 229- 244: ycima NyaW--LlveglYlhtlL aisff VIPR_HUMAN : 229- 244: ycvma NffWl-Lvegl-YlytlL avsff VIPR_HUMAN : 229- 244: ycvma NffW--LlveglYlytlL avsff VIPR_RAT : 230- 245: ycvma NffWl-Lvegl-YlytlL avsff VIPR_RAT : 230- 245: ycvma NffW--LlveglYlytlL avsff VIPS_HUMAN : 216- 231: ycima NffWl-Lvegl-YlhtlL vamlp VIPS_HUMAN : 216- 231: ycima NffW--LlveglYlhtlL vamlp VIPS_MOUSE : 215- 230: ycima NfyWl-Lvegl-YlhtlL vailp VIPS_MOUSE : 215- 230: ycima NfyW--LlveglYlhtlL vailp VIPS_RAT : 215- 230: ycima NfyWl-Lvegl-YlhtlL vailp VIPS_RAT : 215- 230: ycima NfyW--LlveglYlhtlL vailp YOW3_CAEEL : 313- 328: ylrlt NftWm-Laeav-YlwrlL htaqh M 13: 17.5573 30( 30) G-[FLM]-x-V-x(3,5)-Y-x(1,3)-N Occurences: 30(30) CALR_HUMAN : 400- 411: lihfq GFfVati--YcfcN nevqt CALR_PIG : 385- 396: lihfq GFfVaii--YcfcN hevqg CLRA_RAT : 384- 395: lihfq GFfVati--YcfcN hevqv CLRB_RAT : 421- 432: lihfq GFfVati--YcfcN hevqv CRFR_HUMAN : 385- 396: lesfq GFfVsvf--YcflN sevrs CRFR_MOUSE : 356- 367: lesfq GFfVsvf--YcflN sevrs CRFR_RAT : 356- 367: lesfq GFfVsvf--YcflN sevrs DIHR_MANSE : 337- 348: mlstq GFtValf--YcfmN tevrh GIPR_MESAU : 382- 393: lssfq GFlVsvl--YcfiN kevqs GIPR_RAT : 382- 393: lssfq GFlVsvl--YcfiN kevqs GLPR_HUMAN : 395- 406: ftsfq GLmVail--YcfvN nevql GLPR_RAT : 395- 406: ftsfq GFmVavl--YcfvN nevqm GLR_RAT : 394- 405: fssfq GLlVavl--YcflN kevqa GRFR_HUMAN : 369- 380: lgsfq GFiVail--YcflN qevrt GRFR_MOUSE : 369- 380: lgsfq GFiVavl--YcflN qevrt GRFR_PIG : 369- 380: lgsfq GFiVail--YcflN qevrt GRFR_RAT : 410- 421: lgsfq GFvVavl--YcflN qevrt PACR_HUMAN : 393- 404: lgsfq GFvVavl--YcflN gevqa PACR_RAT : 448- 459: lgsfq GFvVavl--YcflN gevqa PTRR_DIDMA : 446- 457: fnsfq GFfVaii--YcfcN gevqa PTRR_HUMAN : 452- 463: fnsfq GFfVaii--YcfcN gevqa PTRR_MOUSE : 452- 463: fnsfq GFfVaii--YcfcN gevqa PTRR_RAT : 452- 463: fnsfq GFfVaii--YcfcN gevqa SCRC_RAT : 381- 392: lgsfq GLvVavl--YcflN gevql VIPR_HUMAN : 381- 392: vgsfq GFvVail--YcflN gevqa VIPR_RAT : 383- 394: vgsfq GFvVail--YcflN gevqa VIPS_HUMAN : 368- 379: lgsfq GLvVavl--YcflN sevqc VIPS_MOUSE : 367- 378: vgsfq GLvVavl--YcflN sevqc VIPS_RAT : 367- 378: vgsfq GLvVavl--YcflN sevqc YOW3_CAEEL : 463- 474: lnglq GMfVsfivcYt--N rsvve N 14: 16.6802 30( 30) Y-C-x(2)-N-x(2)-V Occurences: 30(30) CALR_HUMAN : 407- 414: fvati YCfcNneV qttvk CALR_PIG : 392- 399: fvaii YCfcNheV qgalk CLRA_RAT : 391- 398: fvati YCfcNheV qvtlk CLRB_RAT : 428- 435: fvati YCfcNheV qvtlk CRFR_HUMAN : 392- 399: fvsvf YCflNseV rsair CRFR_MOUSE : 363- 370: fvsvf YCflNseV rsair CRFR_RAT : 363- 370: fvsvf YCflNseV rsair DIHR_MANSE : 344- 351: tvalf YCfmNteV rhair GIPR_MESAU : 389- 396: lvsvl YCfiNkeV qseir GIPR_RAT : 389- 396: lvsvl YCfiNkeV qseir GLPR_HUMAN : 402- 409: mvail YCfvNneV qlefr GLPR_RAT : 402- 409: mvavl YCfvNneV qmefr GLR_RAT : 401- 408: lvavl YCflNkeV qaell GRFR_HUMAN : 376- 383: ivail YCflNqeV rteis GRFR_MOUSE : 376- 383: ivavl YCflNqeV rteis GRFR_PIG : 376- 383: ivail YCflNqeV rteis GRFR_RAT : 417- 424: vvavl YCflNqeV rteis PACR_HUMAN : 400- 407: vvavl YCflNgeV qaeik PACR_RAT : 455- 462: vvavl YCflNgeV qaeik PTRR_DIDMA : 453- 460: fvaii YCfcNgeV qaeik PTRR_HUMAN : 459- 466: fvaii YCfcNgeV qaeik PTRR_MOUSE : 459- 466: fvaii YCfcNgeV qaeir PTRR_RAT : 459- 466: fvaii YCfcNgeV qaeir SCRC_RAT : 388- 395: vvavl YCflNgeV qlevq VIPR_HUMAN : 388- 395: vvail YCflNgeV qaelr VIPR_RAT : 390- 397: vvail YCflNgeV qaelr VIPS_HUMAN : 375- 382: vvavl YCflNseV qcelk VIPS_MOUSE : 374- 381: vvavl YCflNseV qcelk VIPS_RAT : 374- 381: vvavl YCflNseV qcelk YOW3_CAEEL : 128- 135: csaar YCcrNtlV kyhhr O 15: 15.6802 30( 30) C-x(2,3)-N-x-E-x(0,1)-V Occurences: 30(30) CALR_HUMAN : 408- 414: vatiy Cfc-NnE-V qttvk CALR_PIG : 393- 399: vaiiy Cfc-NhE-V qgalk CLRA_RAT : 392- 398: vatiy Cfc-NhE-V qvtlk CLRB_RAT : 429- 435: vatiy Cfc-NhE-V qvtlk CRFR_HUMAN : 393- 399: vsvfy Cfl-NsE-V rsair CRFR_MOUSE : 364- 370: vsvfy Cfl-NsE-V rsair CRFR_RAT : 364- 370: vsvfy Cfl-NsE-V rsair DIHR_MANSE : 345- 351: valfy Cfm-NtE-V rhair GIPR_MESAU : 390- 396: vsvly Cfi-NkE-V qseir GIPR_RAT : 390- 396: vsvly Cfi-NkE-V qseir GLPR_HUMAN : 403- 409: vaily Cfv-NnE-V qlefr GLPR_RAT : 403- 409: vavly Cfv-NnE-V qmefr GLR_RAT : 402- 408: vavly Cfl-NkE-V qaell GRFR_HUMAN : 377- 383: vaily Cfl-NqE-V rteis GRFR_MOUSE : 377- 383: vavly Cfl-NqE-V rteis GRFR_PIG : 377- 383: vaily Cfl-NqE-V rteis GRFR_RAT : 418- 424: vavly Cfl-NqE-V rteis PACR_HUMAN : 401- 407: vavly Cfl-NgE-V qaeik PACR_RAT : 456- 462: vavly Cfl-NgE-V qaeik PTRR_DIDMA : 454- 460: vaiiy Cfc-NgE-V qaeik PTRR_HUMAN : 460- 466: vaiiy Cfc-NgE-V qaeik PTRR_MOUSE : 460- 466: vaiiy Cfc-NgE-V qaeir PTRR_RAT : 460- 466: vaiiy Cfc-NgE-V qaeir SCRC_RAT : 389- 395: vavly Cfl-NgE-V qlevq VIPR_HUMAN : 389- 395: vaily Cfl-NgE-V qaelr VIPR_RAT : 391- 397: vaily Cfl-NgE-V qaelr VIPS_HUMAN : 376- 382: vavly Cfl-NsE-V qcelk VIPS_MOUSE : 375- 381: vavly Cfl-NsE-V qcelk VIPS_RAT : 375- 381: vavly Cfl-NsE-V qcelk YOW3_CAEEL : 78- 86: vsdki CncyNrEyV ynipe P 16: 15.6802 30( 30) T-x(2,3)-L-x(1,2)-L-x-G Occurences: 30(30) CALR_HUMAN : 361- 369: kavka Tmi-LvpLlG iqfvv CALR_PIG : 346- 354: kavra Tli-LvpLlG vqfvv CLRA_RAT : 345- 353: kavka Tmv-LvpLlG iqfvv CLRB_RAT : 382- 390: kavka Tmv-LvpLlG iqfvv CRFR_HUMAN : 345- 353: kavka TlvlLp-LlG ityml CRFR_HUMAN : 345- 353: kavka Tlv-LlpLlG ityml CRFR_MOUSE : 316- 324: kavka TlvlLp-LlG ityml CRFR_MOUSE : 316- 324: kavka Tlv-LlpLlG ityml CRFR_RAT : 316- 324: kavka TlvlLp-LlG ityml CRFR_RAT : 316- 324: kavka Tlv-LlpLlG ityml DIHR_MANSE : 307- 314: pllgi Tnl-Lv-LcG psdds GIPR_MESAU : 340- 348: rlars Tlt-LvpLlG vhevv GIPR_RAT : 340- 348: rlars Tlt-LmpLlG vhevv GLPR_HUMAN : 353- 361: rlaks Tlt-LipLlG thevi GLPR_RAT : 353- 361: rlaks Tlt-LipLlG thevi GLR_RAT : 352- 360: rlars Tlt-LipLlG vhevv GRFR_HUMAN : 331- 339: rlsks Tlf-LipLfG ihyii GRFR_MOUSE : 331- 339: rlsks Tll-LipLfG ihyii GRFR_PIG : 331- 339: rlsks Tll-LipLfG ihyvi GRFR_RAT : 372- 380: rlsks Tll-LipLfG ihyii PACR_HUMAN : 355- 363: rlars Tll-LipLfG ihytv PACR_RAT : 410- 418: rlars Tll-LipLfG ihytv PTRR_DIDMA : 404- 412: kllks Tlv-LmpLfG vhyiv PTRR_HUMAN : 410- 418: kllks Tlv-LmpLfG vhyiv PTRR_MOUSE : 410- 418: kllrs Tlv-LvpLfG vhytv PTRR_RAT : 410- 418: kllrs Tlv-LvpLfG vhytv SCRC_RAT : 344- 352: rlaks Tll-LipLfG ihyiv VIPR_HUMAN : 343- 351: rlars Tll-LipLfG vhyim VIPR_RAT : 345- 353: rlaks Tll-LipLfG ihyvm VIPS_HUMAN : 330- 338: rlaks Tll-LipLfG vhymv VIPS_MOUSE : 329- 337: rlaks Tll-LipLfG vhymv VIPS_RAT : 329- 337: rlaks Tll-LipLfG vhymv YOW3_CAEEL : 454- 463: tyyqv TdqsLngLqG mfvsf Q 17: 15.1802 30( 30) T-x(2)-L-x(0,2)-L-x(1,2)-G Occurences: 30(30) CALR_HUMAN : 361- 369: kavka TmiLvpLl-G iqfvv CALR_PIG : 346- 354: kavra TliLvpLl-G vqfvv CLRA_RAT : 345- 353: kavka TmvLvpLl-G iqfvv CLRB_RAT : 382- 390: kavka TmvLvpLl-G iqfvv CRFR_HUMAN : 345- 353: kavka TlvLlpLl-G ityml CRFR_MOUSE : 316- 324: kavka TlvLlpLl-G ityml CRFR_RAT : 316- 324: kavka TlvLlpLl-G ityml DIHR_MANSE : 307- 314: pllgi TnlLv-Lc-G psdds GIPR_MESAU : 340- 348: rlars TltLvpLl-G vhevv GIPR_RAT : 340- 348: rlars TltLmpLl-G vhevv GLPR_HUMAN : 353- 361: rlaks TltLipLl-G thevi GLPR_RAT : 353- 361: rlaks TltLipLl-G thevi GLR_RAT : 352- 360: rlars TltLipLl-G vhevv GRFR_HUMAN : 331- 339: rlsks TlfLipLf-G ihyii GRFR_MOUSE : 331- 339: rlsks TllLipLf-G ihyii GRFR_PIG : 331- 339: rlsks TllLipLf-G ihyvi GRFR_RAT : 372- 380: rlsks TllLipLf-G ihyii PACR_HUMAN : 355- 363: rlars TllLipLf-G ihytv PACR_RAT : 410- 418: rlars TllLipLf-G ihytv PTRR_DIDMA : 404- 412: kllks TlvLmpLf-G vhyiv PTRR_HUMAN : 410- 418: kllks TlvLmpLf-G vhyiv PTRR_MOUSE : 410- 418: kllrs TlvLvpLf-G vhytv PTRR_RAT : 410- 418: kllrs TlvLvpLf-G vhytv SCRC_RAT : 344- 352: rlaks TllLipLf-G ihyiv VIPR_HUMAN : 343- 351: rlars TllLipLf-G vhyim VIPR_RAT : 345- 353: rlaks TllLipLf-G ihyvm VIPS_HUMAN : 330- 338: rlaks TllLipLf-G vhymv VIPS_MOUSE : 329- 337: rlaks TllLipLf-G vhymv VIPS_RAT : 329- 337: rlaks TllLipLf-G vhymv YOW3_CAEEL : 386- 393: ewmii TpsL--LamG vnlll R 18: 15.1035 36( 30) G-W-[AGS]-x-P Occurences: 36(30) CALR_HUMAN : 282- 286: wyyll GWGfP lvptt CALR_PIG : 267- 271: wyhvl GWGfP liptt CLRA_RAT : 266- 270: wyyll GWGfP ivpti CLRB_RAT : 303- 307: wyyll GWGfP ivpti CRFR_HUMAN : 264- 268: mfici GWGvP fpiiv CRFR_MOUSE : 235- 239: mfvci GWGvP fpiiv CRFR_RAT : 235- 239: mfvci GWGvP fpiiv DIHR_MANSE : 203- 207: vytti GWGaP avfit GIPR_MESAU : 260- 264: cylll GWGaP alfvi GIPR_RAT : 260- 264: cylll GWGaP alfvi GLPR_HUMAN : 273- 277: lyvsi GWGvP llfvv GLPR_RAT : 273- 277: lylsi GWGvP llfvi GLR_RAT : 272- 276: lylci GWGsP llfvi GRFR_HUMAN : 100- 104: dctit GWSeP fppyp GRFR_HUMAN : 249- 253: wlvla GWGlP vlftg GRFR_MOUSE : 100- 104: dctit GWSnP fppyp GRFR_MOUSE : 249- 253: wlvla GWGlP vlctg GRFR_PIG : 100- 104: dcttt GWSeP fppyp GRFR_PIG : 249- 253: wlvla GWGlP llftg GRFR_RAT : 100- 104: dctit GWSdP fppyp GRFR_RAT : 249- 253: wlvla GWGlP vlctg PACR_HUMAN : 122- 126: ncted GWSeP fphyf PACR_HUMAN : 273- 277: wytii GWGtP tvcvt PACR_RAT : 121- 125: ncted GWSeP fphyf PACR_RAT : 272- 276: wytii GWGtP tvcvt PTRR_DIDMA : 322- 326: gftlf GWGlP avfva PTRR_HUMAN : 328- 332: gftvf GWGlP avfva PTRR_MOUSE : 328- 332: gftif GWGlP avfva PTRR_RAT : 328- 332: gftif GWGlP avfva SCRC_RAT : 262- 266: afvll GWGsP aifva VIPR_HUMAN : 262- 266: gyili GWGvP stftm VIPR_RAT : 263- 267: gyili GWGvP svfit VIPS_HUMAN : 248- 252: aylli GWGlP tvcig VIPS_MOUSE : 247- 251: aylli GWGiP svcig VIPS_RAT : 247- 251: aylli GWGiP svcig YOW3_CAEEL : 194- 198: vcrsn GWAtP evnaa S 19: 14.7666 59( 30) L-x-L-x(2)-L-[FILV] Occurences: 59(30) CALR_HUMAN : 10- 16: ftsrc LaLflLL nhptp CALR_PIG : 347- 353: avrat LiLvpLL gvqfv CLRA_RAT : 11- 17: lnrft LlLllLV sptpv CLRB_RAT : 11- 17: lnrft LlLllLV sptpv CRFR_HUMAN : 346- 352: avkat LvLlpLL gitym CRFR_MOUSE : 317- 323: avkat LvLlpLL gitym CRFR_RAT : 317- 323: avkat LvLlpLL gitym DIHR_MANSE : 179- 185: mlveg LyLymLV vetft DIHR_MANSE : 263- 269: lvgla LnLffLI rimwv DIHR_MANSE : 298- 304: atkal LvLipLL gitnl GIPR_MESAU : 10- 16: prlll LcLwgLL lqqae GIPR_MESAU : 144- 150: tvgys LsLgtLL lalli GIPR_MESAU : 149- 155: lslgt LlLalLI lslfr GIPR_MESAU : 341- 347: larst LtLvpLL gvhev GIPR_RAT : 3- 9: mp LrLllLL lwlwg GIPR_RAT : 144- 150: tvgys LsLatLL lalli GIPR_RAT : 149- 155: lslat LlLalLI lslfr GIPR_RAT : 341- 347: larst LtLmpLL gvhev GLPR_HUMAN : 8- 14: gapgp LrLalLL lgmvg GLPR_HUMAN : 354- 360: lakst LtLipLL gthev GLPR_RAT : 8- 14: vtpsl LrLalLL lgavg GLPR_RAT : 354- 360: lakst LtLipLL gthev GLR_RAT : 152- 158: tvgys LsLgaLL lalvi GLR_RAT : 159- 165: lgall LaLviLL glrkl GLR_RAT : 353- 359: larst LtLipLL gvhev GRFR_HUMAN : 332- 338: lskst LfLipLF gihyi GRFR_MOUSE : 332- 338: lskst LlLipLF gihyi GRFR_PIG : 332- 338: lskst LlLipLF gihyv GRFR_RAT : 373- 379: lskst LlLipLF gihyi PACR_HUMAN : 249- 255: lfieg LyLftLL vetff PACR_HUMAN : 356- 362: larst LlLipLF gihyt PACR_RAT : 7- 13: arvlq LsLtaLL lpvai PACR_RAT : 248- 254: lfieg LyLftLL vetff PACR_RAT : 411- 417: larst LlLipLF gihyt PTRR_DIDMA : 298- 304: ilveg LyLhsLI fmaff PTRR_DIDMA : 405- 411: llkst LvLmpLF gvhyi PTRR_HUMAN : 304- 310: ilveg LyLhsLI fmaff PTRR_HUMAN : 411- 417: llkst LvLmpLF gvhyi PTRR_MOUSE : 304- 310: ilveg LyLhsLI fmaff PTRR_MOUSE : 411- 417: llrst LvLvpLF gvhyt PTRR_RAT : 304- 310: ilveg LyLhsLI fmaff PTRR_RAT : 411- 417: llrst LvLvpLF gvhyt SCRC_RAT : 11- 17: rprls LlLlrLL lltka SCRC_RAT : 12- 18: prlsl LlLrlLL ltkaa SCRC_RAT : 238- 244: llveg LyLhtLL aisff SCRC_RAT : 345- 351: lakst LlLipLF gihyi VIPR_HUMAN : 152- 158: tigyg LsLatLL vatai VIPR_HUMAN : 238- 244: llveg LyLytLL avsff VIPR_HUMAN : 344- 350: larst LlLipLF gvhyi VIPR_RAT : 153- 159: tigys LsLasLL vamai VIPR_RAT : 239- 245: llveg LyLytLL avsff VIPR_RAT : 346- 352: lakst LlLipLF gihyv VIPS_HUMAN : 225- 231: llveg LyLhtLL vamlp VIPS_HUMAN : 331- 337: lakst LlLipLF gvhym VIPS_MOUSE : 224- 230: llveg LyLhtLL vailp VIPS_MOUSE : 330- 336: lakst LlLipLF gvhym VIPS_RAT : 224- 230: llveg LyLhtLL vailp VIPS_RAT : 330- 336: lakst LlLipLF gvhym YOW3_CAEEL : 396- 402: amgvn LlLlgLI vyilv T 20: 14.6802 50( 30) L-x(2)-A-x(1,3)-L-x(1,3)-L Occurences: 50(30) CALR_HUMAN : 142- 151: ftpek LknAyv-Lyy-L aivgh CALR_PIG : 143- 152: ftpdk LqnAyi-Lyy-L aivgh CLRA_RAT : 142- 151: ftpdk LhnAyv-Lyy-L alvgh CLRB_RAT : 142- 151: ftpdk LhnAyv-Lyy-L alvgh CRFR_HUMAN : 9- 16: hpqlr LvkAl--Ll--L glnpv CRFR_HUMAN : 9- 18: hpqlr LvkAlllLg--L npvsa CRFR_HUMAN : 9- 18: hpqlr LvkAll-Llg-L npvsa CRFR_HUMAN : 9- 18: hpqlr LvkAl--LllgL npvsa CRFR_HUMAN : 134- 142: islva LlvAfv-Lf--L rlrpg CRFR_HUMAN : 134- 144: islva LlvAfv-LflrL rpgct CRFR_MOUSE : 9- 16: rpqlr LvkAl--Ll--L glnpv CRFR_MOUSE : 9- 18: rpqlr LvkAlllLg--L npvst CRFR_MOUSE : 9- 18: rpqlr LvkAll-Llg-L npvst CRFR_MOUSE : 9- 18: rpqlr LvkAl--LllgL npvst CRFR_MOUSE : 134- 142: islva LlvAfv-Lf--L rlrsi CRFR_MOUSE : 134- 144: islva LlvAfv-LflrL rsirc CRFR_RAT : 9- 16: rpqlr LvkAl--Ll--L glnpv CRFR_RAT : 9- 18: rpqlr LvkAlllLg--L npvst CRFR_RAT : 9- 18: rpqlr LvkAll-Llg-L npvst CRFR_RAT : 9- 18: rpqlr LvkAl--LllgL npvst CRFR_RAT : 134- 142: islva LlvAfv-Lf--L rlrsi CRFR_RAT : 134- 144: islva LlvAfv-LflrL rsirc DIHR_MANSE : 96- 103: lagys LslAv--Ls--L avfvf GIPR_MESAU : 149- 156: lslgt LllAl--Li--L slfrr GIPR_MESAU : 149- 158: lslgt LllAlliLs--L frrlh GIPR_MESAU : 149- 158: lslgt LllAl--LilsL frrlh GIPR_MESAU : 334- 343: cpdyr LrlArstLt--L vpllg GIPR_RAT : 144- 151: tvgys LslAt--Ll--L allil GIPR_RAT : 144- 153: tvgys LslAtllLa--L lilsl GIPR_RAT : 144- 153: tvgys LslAtl-Lla-L lilsl GIPR_RAT : 144- 154: tvgys LslAtllLal-L ilslf GIPR_RAT : 144- 153: tvgys LslAt--LllaL lilsl GIPR_RAT : 144- 154: tvgys LslAtl-LlalL ilslf GIPR_RAT : 149- 156: lslat LllAl--Li--L slfrr GIPR_RAT : 149- 158: lslat LllAlliLs--L frrlh GIPR_RAT : 149- 158: lslat LllAl--LilsL frrlh GIPR_RAT : 334- 343: cpdyr LrlArstLt--L mpllg GLPR_HUMAN : 8- 15: gapgp LrlAl--Ll--L gmvgr GLPR_RAT : 8- 15: vtpsl LrlAl--Ll--L gavgr GLPR_RAT : 50- 60: qcqrf LteApl-LatgL fcnrt GLR_RAT : 157- 167: lslga LllAlviLlg-L rklhc GLR_RAT : 395- 404: ssfqg LlvAv--LycfL nkevq GRFR_HUMAN : 144- 154: isiva LfvAitiLva-L rrlhc GRFR_HUMAN : 221- 230: nfswl LaeAvy-Lnc-L lasts GRFR_HUMAN : 221- 231: nfswl LaeAvy-LnclL astsp GRFR_HUMAN : 245- 255: rafww LvlAgwgLpv-L ftgtw GRFR_MOUSE : 4- 13: mdg LmwAtriLc--L lslcg GRFR_MOUSE : 4- 14: mdg LmwAtriLcl-L slcgv GRFR_MOUSE : 144- 154: isiva LcvAiaiLva-L rrlhc GRFR_MOUSE : 221- 230: nfswl LaeAvy-Lsc-L lasts GRFR_MOUSE : 221- 231: nfswl LaeAvy-LsclL astsp GRFR_MOUSE : 245- 255: pafww LvlAgwgLpv-L ctgtw GRFR_PIG : 144- 154: vsava LfvAiaiLva-L rrlhc GRFR_PIG : 221- 230: nfswl LaeAvy-Ltc-L lasts GRFR_PIG : 221- 231: nfswl LaeAvy-LtclL astsp GRFR_PIG : 245- 254: rafww LvlAgwgLp--L lftgt GRFR_PIG : 245- 255: rafww LvlAgwgLpl-L ftgtw GRFR_RAT : 4- 13: mds LlwAtwvLc--L lnlwg GRFR_RAT : 4- 14: mds LlwAtwvLcl-L nlwgv GRFR_RAT : 144- 154: isiva LcvAiaiLva-L rrlhc GRFR_RAT : 221- 230: nfswl LaeAvy-Lsc-L lasts GRFR_RAT : 221- 231: nfswl LaeAvy-LsclL astsp GRFR_RAT : 245- 255: pafww LvlAgwgLpv-L ctgtw PACR_HUMAN : 349- 358: essiy LrlArstLl--L iplfg PACR_RAT : 404- 413: lstit LrlArstLl--L iplfg PTRR_DIDMA : 199- 206: islgs LtvAv--Li--L gyfrr PTRR_HUMAN : 202- 209: vslas LtvAv--Li--L ayfrr PTRR_MOUSE : 202- 209: mslas LtvAv--Li--L ayfrr PTRR_RAT : 202- 209: mslas LtvAv--Li--L ayfrr SCRC_RAT : 382- 391: gsfqg LvvAv--LycfL ngevq VIPR_HUMAN : 157- 166: lslat LlvAtaiLs--L frklh VIPR_RAT : 158- 167: lslas LlvAmaiLs--L frklh VIPS_HUMAN : 5- 14: mrtl LppAl--LtcwL lapvn VIPS_HUMAN : 369- 378: gsfqg LvvAv--LycfL nsevq VIPS_MOUSE : 368- 377: gsfqg LvvAv--LycfL nsevq VIPS_RAT : 368- 377: gsfqg LvvAv--LycfL nsevq YOW3_CAEEL : 237- 246: asvif LipAvflLt--L lrpir YOW3_CAEEL : 237- 246: asvif LipAvf-Llt-L lrpir YOW3_CAEEL : 237- 247: asvif LipAvflLtl-L rpirc YOW3_CAEEL : 237- 247: asvif LipAvf-LltlL rpirc YOW3_CAEEL : 318- 327: nftwm LaeAvy-Lwr-L lhtaq YOW3_CAEEL : 318- 328: nftwm LaeAvy-LwrlL htaqh Number of patterns evaluated by Pratt:5428 Total running time: 15 seconds