------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 9 sequences from file G_GLU_TRANSPEPTIDASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 9 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename G_GLU_TRANSPEPTIDASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: GGT1_HUMAN 569 GGT2_HUMAN 198 GGT5_HUMAN 586 GGT_ECOLI 580 GGT_PIG 568 GGT_PSESP 575 GGT_RAT 568 PAC1_PSES3 557 PAC1_PSESV 557 Pratt run started at Thu Feb 6 19:44:55 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 31.3604 10( 9) T-x(4)-V-x(1,3)-D-x(0,2)-G-x(2)-V-x(2)-T-x-T-x-N 2: 27.6904 14( 9) V-x(2,3)-D-x(0,2)-G-x(2)-V-x(2)-T-x-T-x-N 3: 20.3503 9( 9) V-x(2)-T-x-T-x-N-x(2,3)-G 4: 20.3503 9( 9) G-x(5)-T-x-T-x-N-x(2,3)-G 5: 18.8503 12( 9) G-x(0,2)-G-x-A-x(0,2)-A-A 6: 16.1802 10( 9) N-x(2)-F-G-x(2,3)-V 7: 16.1802 13( 9) G-x(1,2)-G-G-x(4)-T 8: 16.1802 9( 9) V-x(4)-G-G-x(2,3)-I 9: 16.1802 9( 9) T-x-T-x-N-x(2,3)-G 10: 16.1802 9( 9) S-x(4,5)-D-G-x(2)-V 11: 16.1802 9( 9) T-x(3)-S-x(4)-D-x(1,2)-A 12: 15.6802 12( 9) A-x(3)-R-x(2,4)-G-x-P 13: 15.6802 14( 9) V-x(4)-G-x-A-x(0,2)-A 14: 15.6802 12( 9) A-x(3,4)-L-x(2,3)-G-x(5)-A 15: 15.6802 10( 9) G-G-x(1,2)-I-x(4,5)-A 16: 15.6802 13( 9) G-x(2)-G-G-x(2,4)-I 17: 15.6802 9( 9) G-x(2,3)-G-G-x(2,3)-I 18: 15.6802 15( 9) V-x(3,4)-G-G-x(2,3)-I 19: 15.6802 16( 9) V-x(4,5)-G-x(4,5)-T-x-T 20: 15.6802 13( 9) V-x(1,2)-V-x-G-x(2,3)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 65.8940 9( 9) G-[NS]-[AV]-V-[AS]-[AV]-T-x-T-[IL]-N-x(2,3)-G-x(2)-[FIV]-x(4)-[ST]-[GT]-x-[AIL]-x-[NP]-[ADN]-x(3)-[DEN]-[FL]-[CDGST] B 2: 55.3168 9( 9) V-[AS]-[AV]-T-x-T-[IL]-N-x(2,3)-G-x(2)-[FIV]-x(4)-[ST]-[GT]-x-[AIL]-x-[NP]-[ADN]-x(3)-[DEN]-[FL]-[CDGST] C 3: 53.8879 10( 9) T-x-[HY]-x(2)-V-x(1,3)-D-x(0,2)-G-[NS]-[AV]-V-[AS]-[AV]-T-x-T-[IL]-N-x(3)-[GI] D 4: 47.0453 14( 9) V-x(2,3)-D-x(0,2)-G-[NS]-[AV]-V-[AS]-[AV]-T-x-T-[IL]-N-x(3)-[GI] E 5: 44.7818 9( 9) T-x-T-[IL]-N-x(2,3)-G-x(2)-[FIV]-x(4)-[ST]-[GT]-x-[AIL]-x-[NP]-[ADN]-x(3)-[DEN]-[FL]-[CDGST] F 6: 41.3155 9( 9) T-[APST]-[HY]-x-S-x(4)-D-x(1,2)-A-[ADGV]-[ADS]-[ALV]-[AT]-x-[DT]-[ILP]-[GN] G 7: 33.9307 9( 9) V-x-[GI]-x-[AGPS]-G-G-x(2,3)-I-x(2)-[ADSTV]-[DTV]-[AGL]-x(2)-[IMV]-[ILMV] H 8: 30.7275 11( 9) A-x(3,4)-L-x(2,3)-G-x-[ACDNV]-x(3)-A-x-[AET]-x-[GLP]-x-[ALP]-x-[NTV]-x(3)-[GPV] I 9: 30.4515 9( 9) S-x(4,5)-D-G-[NRS]-x-V-[ASV]-[AIV]-[DT]-x(3)-[NT] J 10: 29.9226 10( 9) G-x(0,2)-G-x-A-x(0,2)-A-A-x-[ADES]-[ASTV]-x(2)-[ACGT]-[GLPV]-x-[GLPV] K 11: 27.9316 9( 9) G-x(2,3)-G-G-x(2,3)-I-x(2)-[ADSTV]-[DTV]-[AGL]-x(2)-[IMV]-[ILMV] L 12: 27.9316 14( 9) V-x(3,4)-G-G-x(2,3)-I-x(2)-[ADSTV]-[DTV]-[AGL]-x(2)-[IMV]-[ILMV] M 13: 25.8967 9( 9) V-[ALV]-x(2)-[DG]-G-x-A-x(0,2)-A-[AGTV]-[ASTV] N 14: 22.3580 11( 9) G-x-[AGLP]-G-G-x(2,4)-I-x(2)-[ADSTV]-[DTV] O 15: 21.0543 15( 9) V-x(4,5)-G-x(4,5)-T-x-T-[AIL]-x(3)-[FIL] P 16: 20.8921 13( 9) V-x(1,2)-V-x-G-x(2,3)-G-x(3)-[AI]-x-[AEGQT] Q 17: 20.2070 12( 9) A-x-[ACDGV]-x-R-x(2,4)-G-[DET]-P R 18: 18.3842 10( 9) N-x(2)-F-G-x(2,3)-V-x(4)-[EGST] S 19: 18.3842 13( 9) G-x(1,2)-G-G-[EGST]-x(3)-T T 20: 15.6802 10( 9) G-G-x(1,2)-I-x(4,5)-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 65.8940 9( 9) G-[NS]-[AV]-V-[AS]-[AV]-T-x-T-[IL]-N-x(2,3)-G-x(2)-[FIV]-x(4)-[ST]-[GT]-x-[AIL]-x-[NP]-[ADN]-x(3)-[DEN]-[FL]-[CDGST] Occurences: 9(9) GGT1_HUMAN : 391- 425: vvaed GSAVSATsTINlyfGskVrspvSGiLfNNemdDFS spsit GGT2_HUMAN : 30- 63: vvaed GSAVSATsTINly-GilFnnewTTsAlPAftnEFG appsp GGT5_HUMAN : 398- 432: vlged GSAVAATsTINtpfGamVysprTGiIlNNellDLC ercpw GGT_ECOLI : 401- 435: vvdkd GNAVAVTyTLNttfGtgIvageSGiLlNNqmdDFS akpgv GGT_PIG : 390- 424: vvsdd GSAVSATsTINlyfGskVrsriSGiLfNDemdDFS spnit GGT_PSESP : 386- 420: ivdkd GNAVSVTyTLNdwfGakVmangTGvLlNDemdDFT skvgv GGT_RAT : 390- 424: vvsed GSAVAATsTINlyfGskVlsrvSGiLfNDemdDFS spnft PAC1_PSES3 : 377- 411: vadam GNVVSATqTINglfGacVqipgTGmIaNNymyNFD phpgr PAC1_PSESV : 377- 411: vadam GNVVSATqTINglfGacVqtpgTGmIaNNymyNFD phpgr B 2: 55.3168 9( 9) V-[AS]-[AV]-T-x-T-[IL]-N-x(2,3)-G-x(2)-[FIV]-x(4)-[ST]-[GT]-x-[AIL]-x-[NP]-[ADN]-x(3)-[DEN]-[FL]-[CDGST] Occurences: 9(9) GGT1_HUMAN : 394- 425: edgsa VSATsTINlyfGskVrspvSGiLfNNemdDFS spsit GGT2_HUMAN : 33- 63: edgsa VSATsTINly-GilFnnewTTsAlPAftnEFG appsp GGT5_HUMAN : 401- 432: edgsa VAATsTINtpfGamVysprTGiIlNNellDLC ercpw GGT_ECOLI : 404- 435: kdgna VAVTyTLNttfGtgIvageSGiLlNNqmdDFS akpgv GGT_PIG : 393- 424: ddgsa VSATsTINlyfGskVrsriSGiLfNDemdDFS spnit GGT_PSESP : 389- 420: kdgna VSVTyTLNdwfGakVmangTGvLlNDemdDFT skvgv GGT_RAT : 393- 424: edgsa VAATsTINlyfGskVlsrvSGiLfNDemdDFS spnft PAC1_PSES3 : 380- 411: amgnv VSATqTINglfGacVqipgTGmIaNNymyNFD phpgr PAC1_PSESV : 380- 411: amgnv VSATqTINglfGacVqtpgTGmIaNNymyNFD phpgr C 3: 53.8879 10( 9) T-x-[HY]-x(2)-V-x(1,3)-D-x(0,2)-G-[NS]-[AV]-V-[AS]-[AV]-T-x-T-[IL]-N-x(3)-[GI] Occurences: 10(9) GGT1_HUMAN : 381- 405: pddgg TaHlsVvaeD--GSAVSATsTINlyfG skvrs GGT2_HUMAN : 20- 44: pddgg TaHlsVvaeD--GSAVSATsTINlygI lfnne GGT5_HUMAN : 388- 412: ghgtg TsHvsVlgeD--GSAVAATsTINtpfG amvys GGT_ECOLI : 391- 415: yesnq TtHysVvdkD--GNAVAVTyTLNttfG tgiva GGT_ECOLI : 391- 415: yesnq TtHysVv--DkdGNAVAVTyTLNttfG tgiva GGT_ECOLI : 392- 415: esnqt ThYsvVdk-D--GNAVAVTyTLNttfG tgiva GGT_PIG : 380- 404: pddag TaHlsVvsdD--GSAVSATsTINlyfG skvrs GGT_PIG : 380- 404: pddag TaHlsVvs-Dd-GSAVSATsTINlyfG skvrs GGT_PSESP : 377- 400: egsnt ThYsiVdk-D--GNAVSVTyTLNdwfG akvma GGT_RAT : 380- 404: pddgg TaHlsVvseD--GSAVAATsTINlyfG skvls PAC1_PSES3 : 367- 391: gesad TtHvtVa--DamGNVVSATqTINglfG acvqi PAC1_PSESV : 367- 391: gesad TtHvtVa--DamGNVVSATqTINglfG acvqt D 4: 47.0453 14( 9) V-x(2,3)-D-x(0,2)-G-[NS]-[AV]-V-[AS]-[AV]-T-x-T-[IL]-N-x(3)-[GI] Occurences: 14(9) GGT1_HUMAN : 386- 405: tahls VvaeD--GSAVSATsTINlyfG skvrs GGT1_HUMAN : 387- 405: ahlsv Vae-D--GSAVSATsTINlyfG skvrs GGT2_HUMAN : 25- 44: tahls VvaeD--GSAVSATsTINlygI lfnne GGT2_HUMAN : 26- 44: ahlsv Vae-D--GSAVSATsTINlygI lfnne GGT5_HUMAN : 393- 412: tshvs VlgeD--GSAVAATsTINtpfG amvys GGT_ECOLI : 396- 415: tthys VvdkD--GNAVAVTyTLNttfG tgiva GGT_ECOLI : 397- 415: thysv Vdk-D--GNAVAVTyTLNttfG tgiva GGT_PIG : 385- 404: tahls VvsdD--GSAVSATsTINlyfG skvrs GGT_PIG : 385- 404: tahls Vvs-Dd-GSAVSATsTINlyfG skvrs GGT_PIG : 386- 404: ahlsv Vsd-D--GSAVSATsTINlyfG skvrs GGT_PSESP : 382- 400: thysi Vdk-D--GNAVSVTyTLNdwfG akvma GGT_RAT : 385- 404: tahls VvseD--GSAVAATsTINlyfG skvls GGT_RAT : 386- 404: ahlsv Vse-D--GSAVAATsTINlyfG skvls PAC1_PSES3 : 370- 391: adtth VtvaDamGNVVSATqTINglfG acvqi PAC1_PSESV : 370- 391: adtth VtvaDamGNVVSATqTINglfG acvqt E 5: 44.7818 9( 9) T-x-T-[IL]-N-x(2,3)-G-x(2)-[FIV]-x(4)-[ST]-[GT]-x-[AIL]-x-[NP]-[ADN]-x(3)-[DEN]-[FL]-[CDGST] Occurences: 9(9) GGT1_HUMAN : 397- 425: savsa TsTINlyfGskVrspvSGiLfNNemdDFS spsit GGT2_HUMAN : 36- 63: savsa TsTINly-GilFnnewTTsAlPAftnEFG appsp GGT5_HUMAN : 404- 432: savaa TsTINtpfGamVysprTGiIlNNellDLC ercpw GGT_ECOLI : 407- 435: navav TyTLNttfGtgIvageSGiLlNNqmdDFS akpgv GGT_PIG : 396- 424: savsa TsTINlyfGskVrsriSGiLfNDemdDFS spnit GGT_PSESP : 392- 420: navsv TyTLNdwfGakVmangTGvLlNDemdDFT skvgv GGT_RAT : 396- 424: savaa TsTINlyfGskVlsrvSGiLfNDemdDFS spnft PAC1_PSES3 : 383- 411: nvvsa TqTINglfGacVqipgTGmIaNNymyNFD phpgr PAC1_PSESV : 383- 411: nvvsa TqTINglfGacVqtpgTGmIaNNymyNFD phpgr F 6: 41.3155 9( 9) T-[APST]-[HY]-x-S-x(4)-D-x(1,2)-A-[ADGV]-[ADS]-[ALV]-[AT]-x-[DT]-[ILP]-[GN] Occurences: 9(9) GGT1_HUMAN : 381- 401: pddgg TAHlSvvaeDgsAVSATsTIN lyfgs GGT2_HUMAN : 20- 40: pddgg TAHlSvvaeDgsAVSATsTIN lygil GGT5_HUMAN : 388- 408: ghgtg TSHvSvlgeDgsAVAATsTIN tpfga GGT_ECOLI : 391- 411: yesnq TTHySvvdkDgnAVAVTyTLN ttfgt GGT_PIG : 380- 400: pddag TAHlSvvsdDgsAVSATsTIN lyfgs GGT_PSESP : 376- 396: hegsn TTHySivdkDgnAVSVTyTLN dwfga GGT_RAT : 380- 400: pddgg TAHlSvvseDgsAVAATsTIN lyfgs PAC1_PSES3 : 165- 184: rgfvv TPYlSncitDn-AGDLArDPG laaml PAC1_PSESV : 165- 184: rgfvv TPYlSncitDn-AADLArDPG laaml G 7: 33.9307 9( 9) V-x-[GI]-x-[AGPS]-G-G-x(2,3)-I-x(2)-[ADSTV]-[DTV]-[AGL]-x(2)-[IMV]-[ILMV] Occurences: 9(9) GGT1_HUMAN : 468- 486: gqvrm VvGaAGGtq-IttATAlaII ynlwf GGT2_HUMAN : 97- 115: gqvrm VvGaAGGtq-IttDTAlaII ynlwf GGT5_HUMAN : 486- 504: qgskl ViGgAGGel-IisAVAqaIM sklwl GGT_ECOLI : 478- 496: gktwl VtGsPGGsr-IitTVLqmVV nsidy GGT_PIG : 467- 485: gqvrm VvGaSGGtq-IttSTAlaII hslwf GGT_PSESP : 463- 481: gktvm VvGtPGGsr-IitATLltML nmidy GGT_RAT : 467- 485: gkvrm VvGaSGGtq-IttSVAlaII nslwf PAC1_PSES3 : 66- 85: aepmm VgIlGGGlshIrlADGrhVV idnls PAC1_PSESV : 66- 85: aepmm VgIlGGGlshIrlADGrhVV idnls H 8: 30.7275 11( 9) A-x(3,4)-L-x(2,3)-G-x-[ACDNV]-x(3)-A-x-[AET]-x-[GLP]-x-[ALP]-x-[NTV]-x(3)-[GPV] Occurences: 11(9) GGT1_HUMAN : 484- 510: tatal AiiynLwf-GyDvkrAvEePrLhNqllP nvttv GGT2_HUMAN : 113- 139: tdtal AiiynLwf-GyDvkrAvEePrLhNkllP nvttv GGT5_HUMAN : 502- 528: savaq AimskLwl-GfDlraAiAaPiLhVnskG cveye GGT_ECOLI : 11- 36: flrrv Aiaa-Lls-GsCfsaAaApPaPpVsygV eedvf GGT_PIG : 483- 509: tstal AiihsLwf-GyDvkrAvEePrLhNqllP ntttl GGT_PSESP : 109- 135: plaat Anmy-LdkdGnVikgAsTtGyLaVgvpG tvsgm GGT_RAT : 483- 509: tsval AiinsLwf-GyDvkrAvEePrLhNqllP ntttv PAC1_PSES3 : 36- 63: plasa AgaqiLlagGnAidaAvAsLfAlTvaeP mmvgi PAC1_PSES3 : 38- 63: asaag Aqil-Lag-GnAidaAvAsLfAlTvaeP mmvgi PAC1_PSESV : 36- 63: plasa AgaqiLlagGnAidaAvAsLfAlTvaeP mmvgi PAC1_PSESV : 38- 63: asaag Aqil-Lag-GnAidaAvAsLfAlTvaeP mmvgi I 9: 30.4515 9( 9) S-x(4,5)-D-G-[NRS]-x-V-[ASV]-[AIV]-[DT]-x(3)-[NT] Occurences: 9(9) GGT1_HUMAN : 385- 401: gtahl Svvae-DGSaVSATstiN lyfgs GGT2_HUMAN : 24- 40: gtahl Svvae-DGSaVSATstiN lygil GGT5_HUMAN : 392- 408: gtshv Svlge-DGSaVAATstiN tpfga GGT_ECOLI : 395- 411: qtthy Svvdk-DGNaVAVTytlN ttfgt GGT_PIG : 384- 400: gtahl Svvsd-DGSaVSATstiN lyfgs GGT_PSESP : 380- 396: ntthy Sivdk-DGNaVSVTytlN dwfga GGT_RAT : 384- 400: gtahl Svvse-DGSaVAATstiN lyfgs PAC1_PSES3 : 74- 91: lgggl ShirlaDGRhVVIDnlsT apgka PAC1_PSESV : 74- 91: lgggl ShirlaDGRhVVIDnlsT apgka J 10: 29.9226 10( 9) G-x(0,2)-G-x-A-x(0,2)-A-A-x-[ADES]-[ASTV]-x(2)-[ACGT]-[GLPV]-x-[GLPV] Occurences: 10(9) GGT1_HUMAN : 61- 77: dalrd G--GsAvdAAiAAllCVgL mnahs GGT1_HUMAN : 552- 566: ivrta G--GwA--AAsDSrkGGeP agy GGT2_HUMAN : 181- 195: ivrta G--GwA--AAlDSrkGGeP agy GGT5_HUMAN : 395- 412: hvsvl GedGsAv-AAtSTinTPfG amvys GGT_ECOLI : 69- 85: dilke G--GnAvdAAvAVgyALaV thpqa GGT_PIG : 60- 76: dtlrd G--GsAvdAAiAAllCVgL mnahs GGT_PSESP : 55- 71: evlks G--GnAidAAvAVgyALaV vypaa GGT_RAT : 551- 565: vvrts G--GwA--AAsDSrkGGeP agy PAC1_PSES3 : 44- 60: qilla G--GnAidAAvASlfALtV aepmm PAC1_PSESV : 44- 60: qilla G--GnAidAAvASlfALtV aepmm K 11: 27.9316 9( 9) G-x(2,3)-G-G-x(2,3)-I-x(2)-[ADSTV]-[DTV]-[AGL]-x(2)-[IMV]-[ILMV] Occurences: 9(9) GGT1_HUMAN : 470- 486: vrmvv Gaa-GGtq-IttATAlaII ynlwf GGT2_HUMAN : 99- 115: vrmvv Gaa-GGtq-IttDTAlaII ynlwf GGT5_HUMAN : 488- 504: sklvi Gga-GGel-IisAVAqaIM sklwl GGT_ECOLI : 480- 496: twlvt Gsp-GGsr-IitTVLqmVV nsidy GGT_PIG : 469- 485: vrmvv Gas-GGtq-IttSTAlaII hslwf GGT_PSESP : 465- 481: tvmvv Gtp-GGsr-IitATLltML nmidy GGT_RAT : 469- 485: vrmvv Gas-GGtq-IttSVAlaII nslwf PAC1_PSES3 : 67- 85: epmmv GilgGGlshIrlADGrhVV idnls PAC1_PSESV : 67- 85: epmmv GilgGGlshIrlADGrhVV idnls L 12: 27.9316 14( 9) V-x(3,4)-G-G-x(2,3)-I-x(2)-[ADSTV]-[DTV]-[AGL]-x(2)-[IMV]-[ILMV] Occurences: 14(9) GGT1_HUMAN : 468- 486: gqvrm VvgaaGGtq-IttATAlaII ynlwf GGT1_HUMAN : 469- 486: qvrmv Vgaa-GGtq-IttATAlaII ynlwf GGT2_HUMAN : 97- 115: gqvrm VvgaaGGtq-IttDTAlaII ynlwf GGT2_HUMAN : 98- 115: qvrmv Vgaa-GGtq-IttDTAlaII ynlwf GGT5_HUMAN : 486- 504: qgskl ViggaGGel-IisAVAqaIM sklwl GGT_ECOLI : 478- 496: gktwl VtgspGGsr-IitTVLqmVV nsidy GGT_PIG : 467- 485: gqvrm VvgasGGtq-IttSTAlaII hslwf GGT_PIG : 468- 485: qvrmv Vgas-GGtq-IttSTAlaII hslwf GGT_PSESP : 463- 481: gktvm VvgtpGGsr-IitATLltML nmidy GGT_PSESP : 464- 481: ktvmv Vgtp-GGsr-IitATLltML nmidy GGT_RAT : 467- 485: gkvrm VvgasGGtq-IttSVAlaII nslwf GGT_RAT : 468- 485: kvrmv Vgas-GGtq-IttSVAlaII nslwf PAC1_PSES3 : 66- 85: aepmm VgilgGGlshIrlADGrhVV idnls PAC1_PSESV : 66- 85: aepmm VgilgGGlshIrlADGrhVV idnls M 13: 25.8967 9( 9) V-[ALV]-x(2)-[DG]-G-x-A-x(0,2)-A-[AGTV]-[ASTV] Occurences: 9(9) GGT1_HUMAN : 386- 398: tahls VVaeDGsAvsATS tinly GGT2_HUMAN : 25- 37: tahls VVaeDGsAvsATS tinly GGT5_HUMAN : 393- 404: tshvs VLgeDGsAv-AAT stint GGT5_HUMAN : 393- 405: tshvs VLgeDGsAvaATS tintp GGT_ECOLI : 396- 407: tthys VVdkDGnAv-AVT ytlnt GGT_PIG : 385- 397: tahls VVsdDGsAvsATS tinly GGT_PSESP : 51- 63: kvgve VLksGGnAidAAV avgya GGT_RAT : 385- 396: tahls VVseDGsAv-AAT stinl GGT_RAT : 385- 397: tahls VVseDGsAvaATS tinly PAC1_PSES3 : 542- 553: adgtp VAisGGlAr-AGA rfti PAC1_PSESV : 542- 553: adgtp VAisGGlAr-AGA rfti N 14: 22.3580 11( 9) G-x-[AGLP]-G-G-x(2,4)-I-x(2)-[ADSTV]-[DTV] Occurences: 11(9) GGT1_HUMAN : 84- 97: nahsm GiGGGlfltIynST trkae GGT1_HUMAN : 470- 481: vrmvv GaAGGtq--IttAT alaii GGT2_HUMAN : 99- 110: vrmvv GaAGGtq--IttDT alaii GGT5_HUMAN : 87- 100: npqsm GlGGGviftIynVT tgkve GGT5_HUMAN : 488- 499: sklvi GgAGGel--IisAV aqaim GGT_ECOLI : 480- 491: twlvt GsPGGsr--IitTV lqmvv GGT_PIG : 83- 96: nahsm GiGGGlfltIynST trkae GGT_PSESP : 465- 476: tvmvv GtPGGsr--IitAT lltml GGT_RAT : 83- 96: nahsm GiGGGlfftIynST trkae PAC1_PSES3 : 67- 80: epmmv GiLGGglshIrlAD grhvv PAC1_PSESV : 67- 80: epmmv GiLGGglshIrlAD grhvv O 15: 21.0543 15( 9) V-x(4,5)-G-x(4,5)-T-x-T-[AIL]-x(3)-[FIL] Occurences: 15(9) GGT1_HUMAN : 386- 404: tahls Vvaed-GsavsaTsTInlyF gskvr GGT1_HUMAN : 468- 486: gqvrm VvgaagGtqit-TaTAlaiI ynlwf GGT1_HUMAN : 468- 486: gqvrm Vvgaa-GgtqitTaTAlaiI ynlwf GGT1_HUMAN : 469- 486: qvrmv Vgaag-Gtqit-TaTAlaiI ynlwf GGT2_HUMAN : 97- 115: gqvrm VvgaagGtqit-TdTAlaiI ynlwf GGT2_HUMAN : 97- 115: gqvrm Vvgaa-GgtqitTdTAlaiI ynlwf GGT2_HUMAN : 98- 115: qvrmv Vgaag-Gtqit-TdTAlaiI ynlwf GGT5_HUMAN : 393- 411: tshvs Vlged-GsavaaTsTIntpF gamvy GGT_ECOLI : 396- 414: tthys Vvdkd-GnavavTyTLnttF gtgiv GGT_PIG : 385- 403: tahls Vvsdd-GsavsaTsTInlyF gskvr GGT_PIG : 467- 485: gqvrm VvgasgGtqit-TsTAlaiI hslwf GGT_PIG : 467- 485: gqvrm Vvgas-GgtqitTsTAlaiI hslwf GGT_PIG : 468- 485: qvrmv Vgasg-Gtqit-TsTAlaiI hslwf GGT_PSESP : 463- 481: gktvm VvgtpgGsrii-TaTLltmL nmidy GGT_PSESP : 463- 481: gktvm Vvgtp-GgsriiTaTLltmL nmidy GGT_PSESP : 464- 481: ktvmv Vgtpg-Gsrii-TaTLltmL nmidy GGT_RAT : 385- 403: tahls Vvsed-GsavaaTsTInlyF gskvl PAC1_PSES3 : 372- 390: tthvt Vadam-GnvvsaTqTInglF gacvq PAC1_PSESV : 372- 390: tthvt Vadam-GnvvsaTqTInglF gacvq P 16: 20.8921 13( 9) V-x(1,2)-V-x-G-x(2,3)-G-x(3)-[AI]-x-[AEGQT] Occurences: 13(9) GGT1_HUMAN : 132- 146: kggls Va-VpGeirGyelAhQ rhgrl GGT1_HUMAN : 465- 479: gqdgq VrmVvGaa-GgtqItT atala GGT2_HUMAN : 94- 108: gqdgq VrmVvGaa-GgtqItT dtala GGT5_HUMAN : 391- 404: tgtsh Vs-VlGed-GsavAaT stint GGT_ECOLI : 440- 455: sakpg VpnVyGlvgGdanAvG pnkrp GGT_PIG : 131- 145: eggls Va-VpGeirGyelAhQ rhgrl GGT_PIG : 464- 478: gedgq VrmVvGas-GgtqItT stala GGT_PSESP : 131- 145: tgyla Vg-VpGtvsGmeyArE kygtk GGT_PSESP : 461- 474: kdgkt Vm-VvGtp-GgsrIiT atllt GGT_PSESP : 461- 475: kdgkt Vm-VvGtpgGsriItA tlltm GGT_RAT : 131- 145: eggls Va-VpGeirGyelAhQ rhgrl GGT_RAT : 464- 478: dkdgk VrmVvGas-GgtqItT svala PAC1_PSES3 : 126- 140: vgaka Va-VpGalkGwceAlA rfgtl PAC1_PSESV : 126- 140: vgaka Va-VpGalkGwceAlA rfgtl Q 17: 20.2070 12( 9) A-x-[ACDGV]-x-R-x(2,4)-G-[DET]-P Occurences: 12(9) GGT1_HUMAN : 323- 333: eafrf AyAkRtll-GDP kfvdv GGT1_HUMAN : 557- 566: ggwaa AsDsRkg--GEP agy GGT2_HUMAN : 186- 195: ggwaa AlDsRkg--GEP agy GGT5_HUMAN : 329- 339: etlkf ArGqRwrl-GDP rshpk GGT_ECOLI : 333- 344: eaeky AyAdRseylGDP dfvkv GGT_PIG : 322- 332: eafrf AyAkRtll-GDP kfvnv GGT_PIG : 556- 565: sgwaa AsDsRkg--GEP agy GGT_PSESP : 319- 330: eamrh AyVdRnsylGDP dfvkn GGT_RAT : 322- 332: eafrf AyAkRtml-GDP kfvdv GGT_RAT : 556- 565: ggwaa AsDsRkg--GEP agy PAC1_PSES3 : 532- 541: gtltg AaCwRad--GTP vaisg PAC1_PSESV : 532- 541: gtltg AaCwRad--GTP vaisg R 18: 18.3842 10( 9) N-x(2)-F-G-x(2,3)-V-x(4)-[EGST] Occurences: 10(9) GGT1_HUMAN : 401- 413: atsti NlyFGsk-VrspvS gilfn GGT1_HUMAN : 488- 500: laiiy NlwFGyd-VkravE eprlh GGT2_HUMAN : 117- 129: laiiy NlwFGyd-VkravE eprlh GGT5_HUMAN : 408- 420: atsti NtpFGam-VysprT giiln GGT_ECOLI : 411- 424: vtytl NttFGtgiVagesG illnn GGT_PIG : 400- 412: atsti NlyFGsk-VrsriS gilfn GGT_PSESP : 396- 408: vtytl NdwFGak-VmangT gvlln GGT_RAT : 400- 412: atsti NlyFGsk-VlsrvS gilfn PAC1_PSES3 : 387- 399: atqti NglFGac-VqipgT gmian PAC1_PSESV : 387- 399: atqti NglFGac-VqtpgT gmian S 19: 18.3842 13( 9) G-x(1,2)-G-G-[EGST]-x(3)-T Occurences: 13(9) GGT1_HUMAN : 84- 92: nahsm Gi-GGGlflT iynst GGT1_HUMAN : 470- 479: vrmvv GaaGGTqitT atala GGT2_HUMAN : 99- 108: vrmvv GaaGGTqitT dtala GGT5_HUMAN : 87- 95: npqsm Gl-GGGvifT iynvt GGT_ECOLI : 480- 489: twlvt GspGGSriiT tvlqm GGT_PIG : 83- 91: nahsm Gi-GGGlflT iynst GGT_PIG : 469- 478: vrmvv GasGGTqitT stala GGT_PSESP : 77- 86: vypaa GniGGGgfmT iqlad GGT_PSESP : 465- 474: tvmvv GtpGGSriiT atllt GGT_RAT : 83- 91: nahsm Gi-GGGlffT iynst GGT_RAT : 469- 478: vrmvv GasGGTqitT svala PAC1_PSES3 : 358- 367: kswta GlsGGEsadT thvtv PAC1_PSESV : 358- 367: kswta GlsGGEsadT thvtv T 20: 15.6802 10( 9) G-G-x(1,2)-I-x(4,5)-A Occurences: 10(9) GGT1_HUMAN : 473- 482: vvgaa GGtqIttat-A laiiy GGT2_HUMAN : 102- 111: vvgaa GGtqIttdt-A laiiy GGT5_HUMAN : 491- 500: vigga GGelIisav-A qaims GGT_ECOLI : 259- 268: emqkn GGl-ItkedlA aykav GGT_PIG : 472- 481: vvgas GGtqIttst-A laiih GGT_PSESP : 55- 64: evlks GGnaIdaav-A vgyal GGT_RAT : 472- 481: vvgas GGtqIttsv-A laiin PAC1_PSES3 : 44- 53: qilla GGnaIdaav-A slfal PAC1_PSES3 : 239- 248: ymaan GGl-IdqadlA nyrie PAC1_PSESV : 44- 53: qilla GGnaIdaav-A slfal Number of patterns evaluated by Pratt:8069 Total running time: 7 seconds