------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file GUANYLATE_KINASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GUANYLATE_KINASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: DLG1_DROME 960 KGUA_BOVIN 197 KGUA_ECOLI 207 KGUA_HAEIN 208 KGUA_PIG 197 KGUA_YEAST 186 MPP1_HUMAN 466 PSD9_RAT 724 VA57_VACCC 193 VA57_VACCV 193 Pratt run started at Thu Feb 6 19:44:40 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 32.3604 10( 10) T-T-R-x(0,1)-P-x(0,1)-R-x(2)-E-x(2)-G-x(2)-Y 2: 28.1904 10( 10) T-R-x(0,1)-P-x(0,1)-R-x(2)-E-x(2)-G-x(2)-Y 3: 27.6904 14( 10) V-x(3,5)-T-x(0,1)-R-x(2)-R-x(2)-E-x(2)-G-x(2)-Y 4: 24.0203 10( 10) R-x(0,1)-P-x(0,1)-R-x(2)-E-x(2)-G-x(2)-Y 5: 20.3503 11( 10) P-x(0,1)-R-x(2)-E-x(2)-G-x(2)-Y 6: 19.8503 11( 10) T-x(1,3)-R-x(2)-E-x(2)-G-x(2)-Y 7: 16.6802 10( 10) R-x(2)-E-x(2)-G-x(2)-Y 8: 16.1802 12( 10) E-x(4,5)-I-x(4)-F-x-E 9: 16.1802 10( 10) E-x(2)-G-x(2)-Y-x(2,3)-S 10: 15.6802 11( 10) E-x(5)-G-x(3,4)-G-x(0,1)-S 11: 15.1802 15( 10) S-x(2,4)-T-x(0,1)-R-x(5)-E 12: 14.6802 12( 10) S-x(1,3)-S-G-x(0,2)-G 13: 12.5102 10( 10) I-x(4)-F-x-E 14: 12.5102 10( 10) R-x-P-R 15: 12.5102 12( 10) S-G-x-G 16: 12.0102 14( 10) R-x(2,3)-R-x(2)-E 17: 12.0102 10( 10) L-x(3)-L-x(1,2)-R 18: 12.0102 13( 10) L-x(2,3)-L-x(2)-R 19: 12.0102 10( 10) G-N-x(2,3)-G 20: 12.0102 11( 10) G-x(0,1)-N-x(2)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 46.5830 10( 10) T-T-R-x(0,1)-P-x(0,1)-R-x(2)-E-x(2)-G-x-[DEH]-Y-x-[FY]-[IV]-[NST]-x-[DER] B 2: 42.4130 10( 10) T-R-x(0,1)-P-x(0,1)-R-x(2)-E-x(2)-G-x-[DEH]-Y-x-[FY]-[IV]-[NST]-x-[DER] C 3: 41.9130 14( 10) V-x(3,5)-T-x(0,1)-R-x(2)-R-x(2)-E-x(2)-G-x-[DEH]-Y-x-[FY]-[IV]-[NST]-x-[DER] D 4: 38.2429 10( 10) R-x(0,1)-P-x(0,1)-R-x(2)-E-x(2)-G-x-[DEH]-Y-x-[FY]-[IV]-[NST]-x-[DER] E 5: 37.5999 12( 10) E-x(4,5)-I-x(4)-F-[IL]-E-x-[AGT]-x(3)-[DGS]-x(2)-[FY]-x-[GST]-x(3)-[APST]-[AIV]-x-[AEQT] F 6: 35.0729 10( 10) R-x(2)-R-x(2)-E-x(2)-G-x-[DEH]-Y-x-[FY]-[IV]-[NST]-x-[DER] G 7: 34.5729 11( 10) P-x(0,1)-R-x(2)-E-x(2)-G-x-[DEH]-Y-x-[FY]-[IV]-[NST]-x-[DER] H 8: 34.0729 11( 10) T-x(1,3)-R-x(2)-E-x(2)-G-x-[DEH]-Y-x-[FY]-[IV]-[NST]-x-[DER] I 9: 33.9298 10( 10) I-x(4)-F-[IL]-E-x-[AGT]-x(3)-[DGS]-x(2)-[FY]-x-[GST]-x(3)-[APST]-[AIV]-x-[AEQT] J 10: 31.6973 10( 10) G-N-x(2,3)-G-x(4)-[AGST]-[GIV]-x-[ADEQT]-x(4)-[GN]-x(2)-[ACPTV]-x-[ILM]-x-[ILV]-[DENT] K 11: 30.9028 10( 10) R-x(2)-E-x(2)-G-x-[DEH]-Y-x-[FY]-[IV]-[NST]-x-[DER] L 12: 30.6432 10( 10) I-x(4)-F-x-E-x-[AGT]-x(3)-[DGS]-x(2)-[FY]-x-[GST]-x(3)-[APST]-[AIV]-x-[AEQT] M 13: 21.6280 15( 10) S-x(2,4)-T-x(0,1)-R-x(2)-[RS]-x(2)-E-x(2)-[EG] N 14: 19.8503 10( 10) T-T-R-x(0,1)-P-x(0,1)-R O 15: 19.4056 10( 10) E-x(2)-G-x(2)-Y-x(2,3)-S-x(2)-[AE] P 16: 19.1882 11( 10) G-x(0,1)-N-x(2)-G-[GST]-x(3)-[AEQST]-[GIV] Q 17: 18.3602 10( 10) S-G-x-G-x-[ST]-x-[AIL] R 18: 18.3517 11( 10) E-x(5)-G-x(3,4)-G-x(0,1)-S-x(2)-[AGQ] S 19: 16.9194 12( 10) S-x(1,3)-S-G-x(0,2)-G-x(4)-[AILV] T 20: 15.6802 10( 10) T-R-x(0,1)-P-x(0,1)-R Best patterns with alignements: fitness hits(seqs) Pattern A 1: 46.5830 10( 10) T-T-R-x(0,1)-P-x(0,1)-R-x(2)-E-x(2)-G-x-[DEH]-Y-x-[FY]-[IV]-[NST]-x-[DER] Occurences: 10(10) DLG1_DROME : 802- 822: scvph TTR-PkReyEvdGrDYhFVSsR eqmer KGUA_BOVIN : 38- 58: fsvsh TTRdP-RpgEenGkDYyFVTrE vmqrd KGUA_ECOLI : 40- 60: vsvsh TTRqP-RpgEvhGeHYfFVNhD efkem KGUA_HAEIN : 40- 60: vsvsh TTRaP-RpgEveGvHYyFVSkE efesl KGUA_PIG : 38- 58: fsvsh TTRdP-RpgEenGkDYyFVTrE vmqrd KGUA_YEAST : 36- 56: fsvss TTRtP-RagEvnGkDYnFVSvD efksm MPP1_HUMAN : 317- 337: ypfpy TTRpP-RksEedGkEYhFIStE emtrn MPP1_HUMAN : 317- 337: ypfpy TTR-PpRksEedGkEYhFIStE emtrn PSD9_RAT : 566- 586: scvph TTR-PkReyEidGrDYhFVSsR ekmek VA57_VACCC : 36- 56: fvvsh TTRfP-RpmEreGvDYhYVNrE aiwkg VA57_VACCV : 36- 56: fvvsh TTRfP-RpmEreGvDYhYVNrE aiwkg B 2: 42.4130 10( 10) T-R-x(0,1)-P-x(0,1)-R-x(2)-E-x(2)-G-x-[DEH]-Y-x-[FY]-[IV]-[NST]-x-[DER] Occurences: 10(10) DLG1_DROME : 803- 822: cvpht TR-PkReyEvdGrDYhFVSsR eqmer KGUA_BOVIN : 39- 58: svsht TRdP-RpgEenGkDYyFVTrE vmqrd KGUA_ECOLI : 41- 60: svsht TRqP-RpgEvhGeHYfFVNhD efkem KGUA_HAEIN : 41- 60: svsht TRaP-RpgEveGvHYyFVSkE efesl KGUA_PIG : 39- 58: svsht TRdP-RpgEenGkDYyFVTrE vmqrd KGUA_YEAST : 37- 56: svsst TRtP-RagEvnGkDYnFVSvD efksm MPP1_HUMAN : 318- 337: pfpyt TRpP-RksEedGkEYhFIStE emtrn MPP1_HUMAN : 318- 337: pfpyt TR-PpRksEedGkEYhFIStE emtrn PSD9_RAT : 567- 586: cvpht TR-PkReyEidGrDYhFVSsR ekmek VA57_VACCC : 37- 56: vvsht TRfP-RpmEreGvDYhYVNrE aiwkg VA57_VACCV : 37- 56: vvsht TRfP-RpmEreGvDYhYVNrE aiwkg C 3: 41.9130 14( 10) V-x(3,5)-T-x(0,1)-R-x(2)-R-x(2)-E-x(2)-G-x-[DEH]-Y-x-[FY]-[IV]-[NST]-x-[DER] Occurences: 14(10) DLG1_DROME : 799- 822: kfgsc Vpht--T-RpkReyEvdGrDYhFVSsR eqmer KGUA_BOVIN : 35- 58: ifgfs Vsht--T-RdpRpgEenGkDYyFVTrE vmqrd KGUA_ECOLI : 35- 60: lydtq VsvshtT-RqpRpgEvhGeHYfFVNhD efkem KGUA_ECOLI : 35- 60: lydtq Vsvsh-TtRqpRpgEvhGeHYfFVNhD efkem KGUA_ECOLI : 37- 60: dtqvs Vsht--T-RqpRpgEvhGeHYfFVNhD efkem KGUA_HAEIN : 35- 60: stqkm VsvshtT-RapRpgEveGvHYyFVSkE efesl KGUA_HAEIN : 35- 60: stqkm Vsvsh-TtRapRpgEveGvHYyFVSkE efesl KGUA_HAEIN : 37- 60: qkmvs Vsht--T-RapRpgEveGvHYyFVSkE efesl KGUA_PIG : 35- 58: ifgfs Vsht--T-RdpRpgEenGkDYyFVTrE vmqrd KGUA_YEAST : 33- 56: sfgfs Vsst--T-RtpRagEvnGkDYnFVSvD efksm MPP1_HUMAN : 311- 337: npekf VypfpyTtRppRksEedGkEYhFIStE emtrn PSD9_RAT : 563- 586: kfgsc Vpht--T-RpkReyEidGrDYhFVSsR ekmek VA57_VACCC : 32- 56: eyfgf Vvsht-T-RfpRpmEreGvDYhYVNrE aiwkg VA57_VACCC : 32- 56: eyfgf Vvsh--TtRfpRpmEreGvDYhYVNrE aiwkg VA57_VACCC : 33- 56: yfgfv Vsht--T-RfpRpmEreGvDYhYVNrE aiwkg VA57_VACCV : 32- 56: eyfgf Vvsht-T-RfpRpmEreGvDYhYVNrE aiwkg VA57_VACCV : 32- 56: eyfgf Vvsh--TtRfpRpmEreGvDYhYVNrE aiwkg VA57_VACCV : 33- 56: yfgfv Vsht--T-RfpRpmEreGvDYhYVNrE aiwkg D 4: 38.2429 10( 10) R-x(0,1)-P-x(0,1)-R-x(2)-E-x(2)-G-x-[DEH]-Y-x-[FY]-[IV]-[NST]-x-[DER] Occurences: 10(10) DLG1_DROME : 804- 822: vphtt R-PkReyEvdGrDYhFVSsR eqmer KGUA_BOVIN : 40- 58: vshtt RdP-RpgEenGkDYyFVTrE vmqrd KGUA_ECOLI : 42- 60: vshtt RqP-RpgEvhGeHYfFVNhD efkem KGUA_HAEIN : 42- 60: vshtt RaP-RpgEveGvHYyFVSkE efesl KGUA_PIG : 40- 58: vshtt RdP-RpgEenGkDYyFVTrE vmqrd KGUA_YEAST : 38- 56: vsstt RtP-RagEvnGkDYnFVSvD efksm MPP1_HUMAN : 319- 337: fpytt RpP-RksEedGkEYhFIStE emtrn MPP1_HUMAN : 319- 337: fpytt R-PpRksEedGkEYhFIStE emtrn PSD9_RAT : 568- 586: vphtt R-PkReyEidGrDYhFVSsR ekmek VA57_VACCC : 38- 56: vshtt RfP-RpmEreGvDYhYVNrE aiwkg VA57_VACCV : 38- 56: vshtt RfP-RpmEreGvDYhYVNrE aiwkg E 5: 37.5999 12( 10) E-x(4,5)-I-x(4)-F-[IL]-E-x-[AGT]-x(3)-[DGS]-x(2)-[FY]-x-[GST]-x(3)-[APST]-[AIV]-x-[AEQT] Occurences: 12(10) DLG1_DROME : 823- 854: fvssr EqmerdIqnhlFIEaGqynDnlYgTsvaSVrE vaekg KGUA_BOVIN : 58- 89: yfvtr EvmqrdIaagdFIEhAefsGnlYgTskaAVrA vqamn KGUA_ECOLI : 61- 91: fvnhd Efkem-IsrdaFLEhAevfGnyYgTsreAIeQ vlatg KGUA_HAEIN : 60- 91: yfvsk EefeslIeqdlFLEyAkvfGgnYyGtslPAiE enlak KGUA_HAEIN : 61- 91: fvske Efesl-IeqdlFLEyAkvfGgnYyGtslPAiE enlak KGUA_PIG : 58- 89: yfvtr EvmqrdIaagdFIEhAefsGnlYgTskaAVrA vqamn KGUA_YEAST : 57- 87: fvsvd Efksm-IknneFIEwAqfsGnyYgStvaSVkQ vsksg MPP1_HUMAN : 337- 368: hfist EemtrnIsaneFLEfGsyqGnmFgTkfeTVhQ ihkqn MPP1_HUMAN : 338- 368: fiste Emtrn-IsaneFLEfGsyqGnmFgTkfeTVhQ ihkqn PSD9_RAT : 587- 618: fvssr EkmekdIqahkFIEaGqynShlYgTsvqSVrE vaeqg VA57_VACCC : 56- 87: hyvnr EaiwkgIaagnFLEhTeflGniYgTsktAVnT aainn VA57_VACCV : 56- 87: hyvnr EaiwkgIaagnFLEhTeflGniYgTsktAVnT aainn F 6: 35.0729 10( 10) R-x(2)-R-x(2)-E-x(2)-G-x-[DEH]-Y-x-[FY]-[IV]-[NST]-x-[DER] Occurences: 10(10) DLG1_DROME : 804- 822: vphtt RpkReyEvdGrDYhFVSsR eqmer KGUA_BOVIN : 40- 58: vshtt RdpRpgEenGkDYyFVTrE vmqrd KGUA_ECOLI : 42- 60: vshtt RqpRpgEvhGeHYfFVNhD efkem KGUA_HAEIN : 42- 60: vshtt RapRpgEveGvHYyFVSkE efesl KGUA_PIG : 40- 58: vshtt RdpRpgEenGkDYyFVTrE vmqrd KGUA_YEAST : 38- 56: vsstt RtpRagEvnGkDYnFVSvD efksm MPP1_HUMAN : 319- 337: fpytt RppRksEedGkEYhFIStE emtrn PSD9_RAT : 568- 586: vphtt RpkReyEidGrDYhFVSsR ekmek VA57_VACCC : 38- 56: vshtt RfpRpmEreGvDYhYVNrE aiwkg VA57_VACCV : 38- 56: vshtt RfpRpmEreGvDYhYVNrE aiwkg G 7: 34.5729 11( 10) P-x(0,1)-R-x(2)-E-x(2)-G-x-[DEH]-Y-x-[FY]-[IV]-[NST]-x-[DER] Occurences: 11(10) DLG1_DROME : 805- 822: phttr PkReyEvdGrDYhFVSsR eqmer KGUA_BOVIN : 42- 58: httrd P-RpgEenGkDYyFVTrE vmqrd KGUA_ECOLI : 44- 60: httrq P-RpgEvhGeHYfFVNhD efkem KGUA_HAEIN : 44- 60: httra P-RpgEveGvHYyFVSkE efesl KGUA_PIG : 42- 58: httrd P-RpgEenGkDYyFVTrE vmqrd KGUA_YEAST : 40- 56: sttrt P-RagEvnGkDYnFVSvD efksm MPP1_HUMAN : 320- 337: pyttr PpRksEedGkEYhFIStE emtrn MPP1_HUMAN : 321- 337: yttrp P-RksEedGkEYhFIStE emtrn PSD9_RAT : 569- 586: phttr PkReyEidGrDYhFVSsR ekmek VA57_VACCC : 40- 56: httrf P-RpmEreGvDYhYVNrE aiwkg VA57_VACCV : 40- 56: httrf P-RpmEreGvDYhYVNrE aiwkg H 8: 34.0729 11( 10) T-x(1,3)-R-x(2)-E-x(2)-G-x-[DEH]-Y-x-[FY]-[IV]-[NST]-x-[DER] Occurences: 11(10) DLG1_DROME : 803- 822: cvpht TrpkReyEvdGrDYhFVSsR eqmer KGUA_BOVIN : 39- 58: svsht TrdpRpgEenGkDYyFVTrE vmqrd KGUA_ECOLI : 41- 60: svsht TrqpRpgEvhGeHYfFVNhD efkem KGUA_HAEIN : 41- 60: svsht TrapRpgEveGvHYyFVSkE efesl KGUA_PIG : 39- 58: svsht TrdpRpgEenGkDYyFVTrE vmqrd KGUA_YEAST : 37- 56: svsst TrtpRagEvnGkDYnFVSvD efksm KGUA_YEAST : 39- 56: ssttr Tp--RagEvnGkDYnFVSvD efksm MPP1_HUMAN : 318- 337: pfpyt TrppRksEedGkEYhFIStE emtrn PSD9_RAT : 567- 586: cvpht TrpkReyEidGrDYhFVSsR ekmek VA57_VACCC : 37- 56: vvsht TrfpRpmEreGvDYhYVNrE aiwkg VA57_VACCV : 37- 56: vvsht TrfpRpmEreGvDYhYVNrE aiwkg I 9: 33.9298 10( 10) I-x(4)-F-[IL]-E-x-[AGT]-x(3)-[DGS]-x(2)-[FY]-x-[GST]-x(3)-[APST]-[AIV]-x-[AEQT] Occurences: 10(10) DLG1_DROME : 829- 854: qmerd IqnhlFIEaGqynDnlYgTsvaSVrE vaekg KGUA_BOVIN : 64- 89: vmqrd IaagdFIEhAefsGnlYgTskaAVrA vqamn KGUA_ECOLI : 66- 91: efkem IsrdaFLEhAevfGnyYgTsreAIeQ vlatg KGUA_HAEIN : 66- 91: efesl IeqdlFLEyAkvfGgnYyGtslPAiE enlak KGUA_PIG : 64- 89: vmqrd IaagdFIEhAefsGnlYgTskaAVrA vqamn KGUA_YEAST : 62- 87: efksm IknneFIEwAqfsGnyYgStvaSVkQ vsksg MPP1_HUMAN : 343- 368: emtrn IsaneFLEfGsyqGnmFgTkfeTVhQ ihkqn PSD9_RAT : 593- 618: kmekd IqahkFIEaGqynShlYgTsvqSVrE vaeqg VA57_VACCC : 62- 87: aiwkg IaagnFLEhTeflGniYgTsktAVnT aainn VA57_VACCV : 62- 87: aiwkg IaagnFLEhTeflGniYgTsktAVnT aainn J 10: 31.6973 10( 10) G-N-x(2,3)-G-x(4)-[AGST]-[GIV]-x-[ADEQT]-x(4)-[GN]-x(2)-[ACPTV]-x-[ILM]-x-[ILV]-[DENT] Occurences: 10(10) DLG1_DROME : 46- 72: iqler GNsglGfsiaGGtDnphiGtdTsIyIT klisg KGUA_BOVIN : 77- 102: haefs GNly-GtskaAVrAvqamNriCvLdVD lqgvr KGUA_ECOLI : 79- 104: haevf GNyy-GtsreAIeQvlatGvdVfLdID wqgaq KGUA_HAEIN : 80- 105: akvfg GNyy-GtslpAIeEnlakGidVfLdID wqgaq KGUA_PIG : 77- 102: haefs GNly-GtskaAVrAvqamNriCvLdVD lqgvr KGUA_YEAST : 75- 100: waqfs GNyy-GstvaSVkQvsksGktCiLdID mqgvk MPP1_HUMAN : 356- 381: fgsyq GNmf-GtkfeTVhQihkqNkiAiLdIE pqtlk PSD9_RAT : 71- 97: itler GNsglGfsiaGGtDnphiGddPsIfIT kiipg VA57_VACCC : 75- 100: htefl GNiy-GtsktAVnTaainNriCvMdLN idgvr VA57_VACCV : 75- 100: htefl GNiy-GtsktAVnTaainNriCvMdLN idgvr K 11: 30.9028 10( 10) R-x(2)-E-x(2)-G-x-[DEH]-Y-x-[FY]-[IV]-[NST]-x-[DER] Occurences: 10(10) DLG1_DROME : 807- 822: ttrpk ReyEvdGrDYhFVSsR eqmer KGUA_BOVIN : 43- 58: ttrdp RpgEenGkDYyFVTrE vmqrd KGUA_ECOLI : 45- 60: ttrqp RpgEvhGeHYfFVNhD efkem KGUA_HAEIN : 45- 60: ttrap RpgEveGvHYyFVSkE efesl KGUA_PIG : 43- 58: ttrdp RpgEenGkDYyFVTrE vmqrd KGUA_YEAST : 41- 56: ttrtp RagEvnGkDYnFVSvD efksm MPP1_HUMAN : 322- 337: ttrpp RksEedGkEYhFIStE emtrn PSD9_RAT : 571- 586: ttrpk ReyEidGrDYhFVSsR ekmek VA57_VACCC : 41- 56: ttrfp RpmEreGvDYhYVNrE aiwkg VA57_VACCV : 41- 56: ttrfp RpmEreGvDYhYVNrE aiwkg L 12: 30.6432 10( 10) I-x(4)-F-x-E-x-[AGT]-x(3)-[DGS]-x(2)-[FY]-x-[GST]-x(3)-[APST]-[AIV]-x-[AEQT] Occurences: 10(10) DLG1_DROME : 829- 854: qmerd IqnhlFiEaGqynDnlYgTsvaSVrE vaekg KGUA_BOVIN : 64- 89: vmqrd IaagdFiEhAefsGnlYgTskaAVrA vqamn KGUA_ECOLI : 66- 91: efkem IsrdaFlEhAevfGnyYgTsreAIeQ vlatg KGUA_HAEIN : 66- 91: efesl IeqdlFlEyAkvfGgnYyGtslPAiE enlak KGUA_PIG : 64- 89: vmqrd IaagdFiEhAefsGnlYgTskaAVrA vqamn KGUA_YEAST : 62- 87: efksm IknneFiEwAqfsGnyYgStvaSVkQ vsksg MPP1_HUMAN : 343- 368: emtrn IsaneFlEfGsyqGnmFgTkfeTVhQ ihkqn PSD9_RAT : 593- 618: kmekd IqahkFiEaGqynShlYgTsvqSVrE vaeqg VA57_VACCC : 62- 87: aiwkg IaagnFlEhTeflGniYgTsktAVnT aainn VA57_VACCV : 62- 87: aiwkg IaagnFlEhTeflGniYgTsktAVnT aainn M 13: 21.6280 15( 10) S-x(2,4)-T-x(0,1)-R-x(2)-[RS]-x(2)-E-x(2)-[EG] Occurences: 15(10) DLG1_DROME : 797- 813: pdkfg ScvphTtRpkReyEvdG rdyhf KGUA_BOVIN : 34- 49: sifgf SvshtT-RdpRpgEenG kdyyf KGUA_BOVIN : 34- 49: sifgf Svsh-TtRdpRpgEenG kdyyf KGUA_BOVIN : 36- 49: fgfsv Sht--T-RdpRpgEenG kdyyf KGUA_ECOLI : 36- 51: ydtqv SvshtT-RqpRpgEvhG ehyff KGUA_ECOLI : 36- 51: ydtqv Svsh-TtRqpRpgEvhG ehyff KGUA_ECOLI : 38- 51: tqvsv Sht--T-RqpRpgEvhG ehyff KGUA_HAEIN : 36- 51: tqkmv SvshtT-RapRpgEveG vhyyf KGUA_HAEIN : 36- 51: tqkmv Svsh-TtRapRpgEveG vhyyf KGUA_HAEIN : 38- 51: kmvsv Sht--T-RapRpgEveG vhyyf KGUA_PIG : 34- 49: sifgf SvshtT-RdpRpgEenG kdyyf KGUA_PIG : 34- 49: sifgf Svsh-TtRdpRpgEenG kdyyf KGUA_PIG : 36- 49: fgfsv Sht--T-RdpRpgEenG kdyyf KGUA_YEAST : 32- 47: dsfgf SvsstT-RtpRagEvnG kdynf KGUA_YEAST : 32- 47: dsfgf Svss-TtRtpRagEvnG kdynf KGUA_YEAST : 34- 47: fgfsv Sst--T-RtpRagEvnG kdynf MPP1_HUMAN : 335- 350: eyhfi SteemT-RniSanEflE fgsyq PSD9_RAT : 561- 577: pdkfg ScvphTtRpkReyEidG rdyhf VA57_VACCC : 34- 47: fgfvv Sht--T-RfpRpmEreG vdyhy VA57_VACCV : 34- 47: fgfvv Sht--T-RfpRpmEreG vdyhy N 14: 19.8503 10( 10) T-T-R-x(0,1)-P-x(0,1)-R Occurences: 10(10) DLG1_DROME : 802- 807: scvph TTR-PkR eyevd KGUA_BOVIN : 38- 43: fsvsh TTRdP-R pgeen KGUA_ECOLI : 40- 45: vsvsh TTRqP-R pgevh KGUA_HAEIN : 40- 45: vsvsh TTRaP-R pgeve KGUA_PIG : 38- 43: fsvsh TTRdP-R pgeen KGUA_YEAST : 36- 41: fsvss TTRtP-R agevn MPP1_HUMAN : 317- 322: ypfpy TTRpP-R kseed MPP1_HUMAN : 317- 322: ypfpy TTR-PpR kseed PSD9_RAT : 566- 571: scvph TTR-PkR eyeid VA57_VACCC : 36- 41: fvvsh TTRfP-R pmere VA57_VACCV : 36- 41: fvvsh TTRfP-R pmere O 15: 19.4056 10( 10) E-x(2)-G-x(2)-Y-x(2,3)-S-x(2)-[AE] Occurences: 10(10) DLG1_DROME : 810- 823: pkrey EvdGrdYhfvSsrE qmerd KGUA_BOVIN : 74- 86: fieha EfsGnlYgt-SkaA vravq KGUA_ECOLI : 76- 88: fleha EvfGnyYgt-SreA ieqvl KGUA_HAEIN : 48- 61: aprpg EveGvhYyfvSkeE fesli KGUA_PIG : 74- 86: fieha EfsGnlYgt-SkaA vravq KGUA_YEAST : 44- 57: tprag EvnGkdYnfvSvdE fksmi MPP1_HUMAN : 325- 338: pprks EedGkeYhfiSteE mtrni PSD9_RAT : 574- 587: pkrey EidGrdYhfvSsrE kmekd VA57_VACCC : 72- 84: fleht EflGniYgt-SktA vntaa VA57_VACCV : 72- 84: fleht EflGniYgt-SktA vntaa P 16: 19.1882 11( 10) G-x(0,1)-N-x(2)-G-[GST]-x(3)-[AEQST]-[GIV] Occurences: 11(10) DLG1_DROME : 497- 508: gpqgl GfNivGGedgQG iyvsf KGUA_BOVIN : 77- 87: haefs G-NlyGTskaAV ravqa KGUA_ECOLI : 79- 89: haevf G-NyyGTsreAI eqvla KGUA_HAEIN : 79- 90: yakvf GgNyyGTslpAI eenla KGUA_HAEIN : 80- 90: akvfg G-NyyGTslpAI eenla KGUA_PIG : 77- 87: haefs G-NlyGTskaAV ravqa KGUA_YEAST : 75- 85: waqfs G-NyyGStvaSV kqvsk MPP1_HUMAN : 356- 366: fgsyq G-NmfGTkfeTV hqihk PSD9_RAT : 324- 335: gstgl GfNivGGedgEG ifisf VA57_VACCC : 75- 85: htefl G-NiyGTsktAV ntaai VA57_VACCV : 75- 85: htefl G-NiyGTsktAV ntaai Q 17: 18.3602 10( 10) S-G-x-G-x-[ST]-x-[AIL] Occurences: 10(10) DLG1_DROME : 48- 55: lergn SGlGfSiA ggtdn KGUA_BOVIN : 12- 19: vlsgp SGaGkStL lkkll KGUA_ECOLI : 13- 20: ivsap SGaGkSsL iqall KGUA_HAEIN : 13- 20: ilsap SGaGkSsL isall KGUA_PIG : 12- 19: vlsgp SGaGkStL lkkll KGUA_YEAST : 10- 17: visgp SGtGkStL lkklf MPP1_HUMAN : 291- 298: vliga SGvGpShI knall PSD9_RAT : 73- 80: lergn SGlGfSiA ggtdn VA57_VACCC : 14- 21: ilsgp SGsGkTaI akrlw VA57_VACCV : 14- 21: ilsgp SGlGkTaI akrlw R 18: 18.3517 11( 10) E-x(5)-G-x(3,4)-G-x(0,1)-S-x(2)-[AGQ] Occurences: 11(10) DLG1_DROME : 154- 170: gpkvi EidlvkGgkglGfSiaG gignq KGUA_BOVIN : 71- 86: agdfi EhaefsGnly-GtSkaA vravq KGUA_ECOLI : 73- 88: rdafl EhaevfGnyy-GtSreA ieqvl KGUA_HAEIN : 73- 89: qdlfl EyakvfGgnyyGtSlpA ieenl KGUA_PIG : 71- 86: agdfi EhaefsGnly-GtSkaA vravq KGUA_YEAST : 69- 83: nnefi EwaqfsGnyy-G-StvA svkqv MPP1_HUMAN : 45- 60: lntvt EdmytnGspapG-SpaQ vkgqe PSD9_RAT : 65- 81: emeye EitlerGnsglGfSiaG gtdnp PSD9_RAT : 160- 176: aekvm EiklikGpkglGfSiaG gvgnq VA57_VACCC : 69- 84: agnfl EhteflGniy-GtSktA vntaa VA57_VACCV : 69- 84: agnfl EhteflGniy-GtSktA vntaa S 19: 16.9194 12( 10) S-x(1,3)-S-G-x(0,2)-G-x(4)-[AILV] Occurences: 12(10) DLG1_DROME : 250- 259: qhltt Sa--SG--GggggL ssgqq KGUA_BOVIN : 9- 20: rpvvl Sgp-SGa-GkstlL kkllq KGUA_ECOLI : 10- 21: tlyiv Sap-SGa-GksslI qallk KGUA_HAEIN : 10- 21: nlyil Sap-SGa-GksslI salla KGUA_PIG : 9- 20: rpvvl Sgp-SGa-GkstlL kkllq KGUA_YEAST : 7- 18: rpivi Sgp-SGt-GkstlL kklfa MPP1_HUMAN : 6- 17: mtlka SegeSG--GsmhtA lsdly PSD9_RAT : 509- 520: akdwg Ss--SGsqGredsV lsyet VA57_VACCC : 7- 20: sgivk SiilSGpsGsgktA iakrl VA57_VACCC : 11- 22: ksiil Sgp-SGs-GktaiA krlwe VA57_VACCV : 7- 20: sgivk SiilSGpsGlgktA iakrl VA57_VACCV : 11- 22: ksiil Sgp-SGl-GktaiA krlwe T 20: 15.6802 10( 10) T-R-x(0,1)-P-x(0,1)-R Occurences: 10(10) DLG1_DROME : 803- 807: cvpht TR-PkR eyevd KGUA_BOVIN : 39- 43: svsht TRdP-R pgeen KGUA_ECOLI : 41- 45: svsht TRqP-R pgevh KGUA_HAEIN : 41- 45: svsht TRaP-R pgeve KGUA_PIG : 39- 43: svsht TRdP-R pgeen KGUA_YEAST : 37- 41: svsst TRtP-R agevn MPP1_HUMAN : 318- 322: pfpyt TRpP-R kseed MPP1_HUMAN : 318- 322: pfpyt TR-PpR kseed PSD9_RAT : 567- 571: cvpht TR-PkR eyeid VA57_VACCC : 37- 41: vvsht TRfP-R pmere VA57_VACCV : 37- 41: vvsht TRfP-R pmere Number of patterns evaluated by Pratt:2569 Total running time: 3 seconds