------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 6 sequences from file GTP_CYCLOHYDROL_1_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 6 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GTP_CYCLOHYDROL_1_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: GCH1_BACSU 190 GCH1_ECOLI 221 GCH1_HAEIN 218 GCH1_HUMAN 250 GCH1_MOUSE 241 GCH1_RAT 241 Pratt run started at Thu Feb 6 19:43:16 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 69.3909 6( 6) G-x(5)-Y-x-P-x(3,4)-V-x-G-L-S-K-x(2)-R-x-V-x(5)-R-x-Q-x-Q-E-R-x-T-x(3,5)-A 2: 65.2208 6( 6) Y-x-P-x(3,4)-V-x-G-L-S-K-x(2)-R-x-V-x(5)-R-x-Q-x-Q-E-R-x-T-x(3,5)-A 3: 65.2208 7( 6) V-x(1,3)-Y-x-P-x(3,4)-V-x-G-L-S-K-x(2)-R-x-V-x(5)-R-x-Q-x-Q-E-R-x-T 4: 61.0508 6( 6) P-x(3,4)-V-x-G-L-S-K-x(2)-R-x-V-x(5)-R-x-Q-x-Q-E-R-x-T-x(3,5)-A 5: 60.5508 6( 6) K-x(0,2)-V-x-G-L-S-K-x(2)-R-x-V-x(5)-R-x-Q-x-Q-E-R-x-T-x(3,5)-A 6: 60.5508 6( 6) E-x-V-x-V-x-D-I-x(3)-S-x-C-E-H-H-x-V-x(3)-G-x(1,3)-V-x(1,3)-Y-x-P 7: 57.3807 6( 6) V-x-G-L-S-K-x(2)-R-x-V-x(5)-R-x-Q-x-Q-E-R-x-T-x(3,5)-A 8: 56.3807 6( 6) V-x-V-x-D-I-x(3)-S-x-C-E-H-H-x-V-x(3)-G-x(1,3)-V-x(1,3)-Y-x-P 9: 53.7107 7( 6) E-x(3,4)-V-x-D-I-x(3)-S-x-C-E-H-H-x-V-x(3)-G-x(5)-Y-x-P 10: 53.2107 6( 6) G-L-S-K-x(2)-R-x-V-x(5)-R-x-Q-x-Q-E-R-x-T-x(3,5)-A 11: 52.7107 7( 6) E-x(1,2)-V-x-V-x-D-I-x(3)-S-x-C-E-H-H-x-V-x(3)-G-x(1,3)-V 12: 52.2107 6( 6) V-x-D-I-x(3)-S-x-C-E-H-H-x-V-x(3)-G-x(1,3)-V-x(1,3)-Y-x-P 13: 49.0406 6( 6) L-S-K-x(2)-R-x-V-x(5)-R-x-Q-x-Q-E-R-x-T-x(3,5)-A 14: 48.0406 6( 6) D-I-x(3)-S-x-C-E-H-H-x-V-x(3)-G-x(1,3)-V-x(1,3)-Y-x-P 15: 44.8706 6( 6) S-K-x(2)-R-x-V-x(5)-R-x-Q-x-Q-E-R-x-T-x(3,5)-A 16: 43.8706 6( 6) I-x(3)-S-x-C-E-H-H-x-V-x(3)-G-x(1,3)-V-x(1,3)-Y-x-P 17: 40.7005 6( 6) K-x(2)-R-x-V-x(5)-R-x-Q-x-Q-E-R-x-T-x(3,5)-A 18: 39.7005 6( 6) S-x-C-E-H-H-x-V-x(3)-G-x(1,3)-V-x(1,3)-Y-x-P 19: 36.5305 6( 6) T-x(0,2)-L-x(4)-V-x-V-x(3)-A-x-H-x-C-x(3)-R-G 20: 36.5305 6( 6) R-x-V-x(5)-R-x-Q-x-Q-E-R-x-T-x(3,5)-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 116.6200 7( 6) V-x(1,3)-Y-x-P-x(3,4)-V-x-G-L-S-K-[IL]-[AN]-R-[AI]-V-[EQS]-x(2)-[AS]-x-R-[LP]-Q-[LV]-Q-E-R-[IL]-T-x-[QT]-[IL]-[AL]-x-[AS]-[FIL]-x-[ET]-x-L-x-[PT] B 2: 113.3270 6( 6) T-x(0,2)-L-x-[PT]-x-[DGN]-V-x-V-x-[IV]-[DEK]-A-x-H-x-C-[MV]-x(2)-R-G-[IV]-[QR]-[DK]-x-[GNT]-[AS]-x-T-[TV]-T-[ST]-[AST]-x(2)-G-[LV]-F-x-[DES]-[DS]-x(2)-[AT]-R-x-E C 3: 111.7113 6( 6) G-[KR]-[AV]-x-[IV]-[AG]-Y-x-P-x(3,4)-V-x-G-L-S-K-[IL]-[AN]-R-[AI]-V-[EQS]-x(2)-[AS]-x-R-[LP]-Q-[LV]-Q-E-R-[IL]-T-x(3,5)-A-x-[AQST]-x(3)-[AEGQT] D 4: 105.5159 6( 6) K-x(0,2)-V-x-G-L-S-K-[IL]-[AN]-R-[AI]-V-[EQS]-x(2)-[AS]-x-R-[LP]-Q-[LV]-Q-E-R-[IL]-T-x(3,5)-A-x-[AQST]-x(3)-[AEGQT]-x(2)-[DGNP]-x-[AG]-V-x-[IV]-x-[AIV] E 5: 104.2956 6( 6) Y-x-P-x(3,4)-V-x-G-L-S-K-[IL]-[AN]-R-[AI]-V-[EQS]-x(2)-[AS]-x-R-[LP]-Q-[LV]-Q-E-R-[IL]-T-x(3,5)-A-x-[AQST]-x(3)-[AEGQT]-x(2)-[DGNP]-x-[AG]-V F 6: 103.3504 6( 6) P-x(3,4)-V-x-G-L-S-K-[IL]-[AN]-R-[AI]-V-[EQS]-x(2)-[AS]-x-R-[LP]-Q-[LV]-Q-E-R-[IL]-T-x(3,5)-A-x-[AQST]-x(3)-[AEGQT]-x(2)-[DGNP]-x-[AG]-V-x-[IV] G 7: 102.3458 6( 6) V-x-G-L-S-K-[IL]-[AN]-R-[AI]-V-[EQS]-x(2)-[AS]-x-R-[LP]-Q-[LV]-Q-E-R-[IL]-T-x(3,5)-A-x-[AQST]-x(3)-[AEGQT]-x(2)-[DGNP]-x-[AG]-V-x-[IV]-x-[AIV] H 8: 101.6536 6( 6) G-L-S-K-[IL]-[AN]-R-[AI]-V-[EQS]-x(2)-[AS]-x-R-[LP]-Q-[LV]-Q-E-R-[IL]-T-x(3,5)-A-x-[AQST]-x(3)-[AEGQT]-x(2)-[DGNP]-x-[AG]-V-x-[IV]-x-[AIV]-x(4)-[MV] I 9: 97.4836 6( 6) L-S-K-[IL]-[AN]-R-[AI]-V-[EQS]-x(2)-[AS]-x-R-[LP]-Q-[LV]-Q-E-R-[IL]-T-x(3,5)-A-x-[AQST]-x(3)-[AEGQT]-x(2)-[DGNP]-x-[AG]-V-x-[IV]-x-[AIV]-x(4)-[MV] J 10: 93.3135 6( 6) S-K-[IL]-[AN]-R-[AI]-V-[EQS]-x(2)-[AS]-x-R-[LP]-Q-[LV]-Q-E-R-[IL]-T-x(3,5)-A-x-[AQST]-x(3)-[AEGQT]-x(2)-[DGNP]-x-[AG]-V-x-[IV]-x-[AIV]-x(4)-[MV] K 11: 90.6961 7( 6) E-x(3,4)-V-x-D-I-[ADT]-[FLM]-x-S-x-C-E-H-H-[FL]-V-[PT]-[FI]-x-G-[KR]-[AV]-x-[IV]-[AG]-Y-x-P-x(4)-[ILV]-[GT]-[GL] L 12: 89.1435 6( 6) K-[IL]-[AN]-R-[AI]-V-[EQS]-x(2)-[AS]-x-R-[LP]-Q-[LV]-Q-E-R-[IL]-T-x(3,5)-A-x-[AQST]-x(3)-[AEGQT]-x(2)-[DGNP]-x-[AG]-V-x-[IV]-x-[AIV]-x(4)-[MV] M 13: 88.2742 6( 6) E-[LM]-V-x-V-x-D-I-[ADT]-[FLM]-x-S-x-C-E-H-H-[FL]-V-[PT]-[FI]-x-G-x(1,3)-V-x(1,3)-Y-x-P-x(4)-[ILV]-[GT]-[GL] N 14: 80.5372 6( 6) V-x-V-x-D-I-[ADT]-[FLM]-x-S-x-C-E-H-H-[FL]-V-[PT]-[FI]-x-G-x(1,3)-V-x(1,3)-Y-x-P-x(4)-[ILV]-[GT]-[GL] O 15: 78.4459 7( 6) E-x(1,2)-V-x-V-x-D-I-[ADT]-[FLM]-x-S-x-C-E-H-H-[FL]-V-[PT]-[FI]-x-G-x(1,3)-V-x(2)-[AGI]-x(2)-[DGP]-x(3)-[GTV]-[GIL] P 16: 78.4178 6( 6) R-[AI]-V-[EQS]-x(2)-[AS]-x-R-[LP]-Q-[LV]-Q-E-R-[IL]-T-x(3,5)-A-x-[AQST]-x(3)-[AEGQT]-x(2)-[DGNP]-x-[AG]-V-x-[IV]-x-[AIV]-x(4)-[MV] Q 17: 76.3672 6( 6) V-x-D-I-[ADT]-[FLM]-x-S-x-C-E-H-H-[FL]-V-[PT]-[FI]-x-G-x(1,3)-V-x(1,3)-Y-x-P-x(4)-[ILV]-[GT]-[GL] R 18: 75.0716 6( 6) E-[LM]-V-x-V-x-D-I-[ADT]-[FLM]-x-S-x-C-E-H-H-[FL]-V-[PT]-[FI]-x-G-x(1,3)-V-x(1,3)-Y S 19: 72.1971 6( 6) D-I-[ADT]-[FLM]-x-S-x-C-E-H-H-[FL]-V-[PT]-[FI]-x-G-x(1,3)-V-x(1,3)-Y-x-P-x(4)-[ILV]-[GT]-[GL] T 20: 68.0271 6( 6) I-[ADT]-[FLM]-x-S-x-C-E-H-H-[FL]-V-[PT]-[FI]-x-G-x(1,3)-V-x(1,3)-Y-x-P-x(4)-[ILV]-[GT]-[GL] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 116.6200 7( 6) V-x(1,3)-Y-x-P-x(3,4)-V-x-G-L-S-K-[IL]-[AN]-R-[AI]-V-[EQS]-x(2)-[AS]-x-R-[LP]-Q-[LV]-Q-E-R-[IL]-T-x-[QT]-[IL]-[AL]-x-[AS]-[FIL]-x-[ET]-x-L-x-[PT] Occurences: 7(6) GCH1_BACSU : 91- 137: ygkah Va--YiPrggkVtGLSKLARAVEavAkRPQLQERITsTIAeSIvEtLdP hgvmv GCH1_ECOLI : 123- 168: dgkat Va--YiPkds-ViGLSKINRIVQffAqRPQVQERLTqQILiALqTlLgT nnvav GCH1_HAEIN : 120- 167: tidgk VcvaYyPkdw-ViGLSKINRIVSffAqRPQVQERLTeQLLtAFqTiLeT ddvav GCH1_HAEIN : 122- 167: dgkvc Va--YyPkdw-ViGLSKINRIVSffAqRPQVQERLTeQLLtAFqTiLeT ddvav GCH1_HUMAN : 152- 199: pfvgk VhigYlPnkq-VlGLSKLARIVEiySrRLQVQERLTkQIAvAItEaLrP agvgv GCH1_MOUSE : 143- 190: pfvgr VhigYlPnkq-VlGLSKLARIVEiySrRLQVQERLTkQIAvAItEaLqP agvgv GCH1_RAT : 143- 190: pfvgr VhigYlPnkq-VlGLSKLARIVEiySrRLQVQERLTkQIAvAItEaLqP agvgv B 2: 113.3270 6( 6) T-x(0,2)-L-x-[PT]-x-[DGN]-V-x-V-x-[IV]-[DEK]-A-x-H-x-C-[MV]-x(2)-R-G-[IV]-[QR]-[DK]-x-[GNT]-[AS]-x-T-[TV]-T-[ST]-[AST]-x(2)-G-[LV]-F-x-[DES]-[DS]-x(2)-[AT]-R-x-E Occurences: 6(6) GCH1_BACSU : 134- 181: esive T--LdPhGVmVvVEAeHmCMtmRGVRKpGAkTVTSAvrGVFkDDaaARaE vlehi GCH1_ECOLI : 164- 212: lialq Tl-LgTnNVaVsIDAvHyCVkaRGIRDaTSaTTTTSlgGLFkSSqnTRhE flrav GCH1_HAEIN : 163- 211: ltafq Ti-LeTdDVaVyVKAtHfCVkaRGIRDtNSyTVTSAygGVFlEDrdTRkE flatv GCH1_HUMAN : 194- 243: iavai TeaLrPaGVgVvVEAtHmCMvmRGVQKmNSkTVTSTmlGVFrEDpkTReE fltli GCH1_MOUSE : 185- 234: iavai TeaLqPaGVgVvIEAtHmCMvmRGVQKmNSkTVTSTmlGVFrEDpkTReE fltli GCH1_RAT : 185- 234: iavai TeaLqPaGVgVvIEAtHmCMvmRGVQKmNSkTVTSTmlGVFrEDpkTReE fltli C 3: 111.7113 6( 6) G-[KR]-[AV]-x-[IV]-[AG]-Y-x-P-x(3,4)-V-x-G-L-S-K-[IL]-[AN]-R-[AI]-V-[EQS]-x(2)-[AS]-x-R-[LP]-Q-[LV]-Q-E-R-[IL]-T-x(3,5)-A-x-[AQST]-x(3)-[AEGQT] Occurences: 6(6) GCH1_BACSU : 87- 134: lvpfy GKAhVAYiPrggkVtGLSKLARAVEavAkRPQLQERITsti--AeSiveT ldphg GCH1_ECOLI : 119- 167: fvtid GKAtVAYiPkds-ViGLSKINRIVQffAqRPQVQERLTqqiliAlQtllG tnnva GCH1_HAEIN : 118- 166: fvtid GKVcVAYyPkdw-ViGLSKINRIVSffAqRPQVQERLTeqlltAfQtilE tddva GCH1_HUMAN : 150- 196: lvpfv GKVhIGYlPnkq-VlGLSKLARIVEiySrRLQVQERLTkqi--AvAiteA lrpag GCH1_MOUSE : 141- 187: lvpfv GRVhIGYlPnkq-VlGLSKLARIVEiySrRLQVQERLTkqi--AvAiteA lqpag GCH1_MOUSE : 141- 189: lvpfv GRVhIGYlPnkq-VlGLSKLARIVEiySrRLQVQERLTkqiavAiTealQ pagvg GCH1_RAT : 141- 187: lvpfv GRVhIGYlPnkq-VlGLSKLARIVEiySrRLQVQERLTkqi--AvAiteA lqpag GCH1_RAT : 141- 189: lvpfv GRVhIGYlPnkq-VlGLSKLARIVEiySrRLQVQERLTkqiavAiTealQ pagvg D 4: 105.5159 6( 6) K-x(0,2)-V-x-G-L-S-K-[IL]-[AN]-R-[AI]-V-[EQS]-x(2)-[AS]-x-R-[LP]-Q-[LV]-Q-E-R-[IL]-T-x(3,5)-A-x-[AQST]-x(3)-[AEGQT]-x(2)-[DGNP]-x-[AG]-V-x-[IV]-x-[AIV] Occurences: 6(6) GCH1_BACSU : 99- 144: iprgg K--VtGLSKLARAVEavAkRPQLQERITsti--AeSiveTldPhGVmVvV eaehm GCH1_ECOLI : 128- 177: vayip KdsViGLSKINRIVQffAqRPQVQERLTqqiliAlQtllGtnNvAVsIdA vhycv GCH1_HAEIN : 127- 176: vayyp KdwViGLSKINRIVSffAqRPQVQERLTeqlltAfQtilEtdDvAVyVkA thfcv GCH1_HUMAN : 160- 206: gylpn Kq-VlGLSKLARIVEiySrRLQVQERLTkqi--AvAiteAlrPaGVgVvV eathm GCH1_MOUSE : 151- 197: gylpn Kq-VlGLSKLARIVEiySrRLQVQERLTkqi--AvAiteAlqPaGVgVvI eathm GCH1_MOUSE : 151- 199: gylpn Kq-VlGLSKLARIVEiySrRLQVQERLTkqiavAiTealQpaGvGVvIeA thmcm GCH1_RAT : 151- 197: gylpn Kq-VlGLSKLARIVEiySrRLQVQERLTkqi--AvAiteAlqPaGVgVvI eathm GCH1_RAT : 151- 199: gylpn Kq-VlGLSKLARIVEiySrRLQVQERLTkqiavAiTealQpaGvGVvIeA thmcm E 5: 104.2956 6( 6) Y-x-P-x(3,4)-V-x-G-L-S-K-[IL]-[AN]-R-[AI]-V-[EQS]-x(2)-[AS]-x-R-[LP]-Q-[LV]-Q-E-R-[IL]-T-x(3,5)-A-x-[AQST]-x(3)-[AEGQT]-x(2)-[DGNP]-x-[AG]-V Occurences: 6(6) GCH1_BACSU : 93- 140: kahva YiPrggkVtGLSKLARAVEavAkRPQLQERITsti--AeSiveTldPhGV mvvve GCH1_ECOLI : 125- 173: katva YiPkds-ViGLSKINRIVQffAqRPQVQERLTqqiliAlQtllGtnNvAV sidav GCH1_HAEIN : 124- 172: kvcva YyPkdw-ViGLSKINRIVSffAqRPQVQERLTeqlltAfQtilEtdDvAV yvkat GCH1_HUMAN : 156- 202: kvhig YlPnkq-VlGLSKLARIVEiySrRLQVQERLTkqi--AvAiteAlrPaGV gvvve GCH1_MOUSE : 147- 193: rvhig YlPnkq-VlGLSKLARIVEiySrRLQVQERLTkqi--AvAiteAlqPaGV gvvie GCH1_MOUSE : 147- 195: rvhig YlPnkq-VlGLSKLARIVEiySrRLQVQERLTkqiavAiTealQpaGvGV vieat GCH1_RAT : 147- 193: rvhig YlPnkq-VlGLSKLARIVEiySrRLQVQERLTkqi--AvAiteAlqPaGV gvvie GCH1_RAT : 147- 195: rvhig YlPnkq-VlGLSKLARIVEiySrRLQVQERLTkqiavAiTealQpaGvGV vieat F 6: 103.3504 6( 6) P-x(3,4)-V-x-G-L-S-K-[IL]-[AN]-R-[AI]-V-[EQS]-x(2)-[AS]-x-R-[LP]-Q-[LV]-Q-E-R-[IL]-T-x(3,5)-A-x-[AQST]-x(3)-[AEGQT]-x(2)-[DGNP]-x-[AG]-V-x-[IV] Occurences: 6(6) GCH1_BACSU : 95- 142: hvayi PrggkVtGLSKLARAVEavAkRPQLQERITsti--AeSiveTldPhGVmV vveae GCH1_ECOLI : 127- 175: tvayi Pkds-ViGLSKINRIVQffAqRPQVQERLTqqiliAlQtllGtnNvAVsI davhy GCH1_HAEIN : 126- 174: cvayy Pkdw-ViGLSKINRIVSffAqRPQVQERLTeqlltAfQtilEtdDvAVyV kathf GCH1_HUMAN : 158- 204: higyl Pnkq-VlGLSKLARIVEiySrRLQVQERLTkqi--AvAiteAlrPaGVgV vveat GCH1_MOUSE : 149- 195: higyl Pnkq-VlGLSKLARIVEiySrRLQVQERLTkqi--AvAiteAlqPaGVgV vieat GCH1_MOUSE : 149- 197: higyl Pnkq-VlGLSKLARIVEiySrRLQVQERLTkqiavAiTealQpaGvGVvI eathm GCH1_RAT : 149- 195: higyl Pnkq-VlGLSKLARIVEiySrRLQVQERLTkqi--AvAiteAlqPaGVgV vieat GCH1_RAT : 149- 197: higyl Pnkq-VlGLSKLARIVEiySrRLQVQERLTkqiavAiTealQpaGvGVvI eathm G 7: 102.3458 6( 6) V-x-G-L-S-K-[IL]-[AN]-R-[AI]-V-[EQS]-x(2)-[AS]-x-R-[LP]-Q-[LV]-Q-E-R-[IL]-T-x(3,5)-A-x-[AQST]-x(3)-[AEGQT]-x(2)-[DGNP]-x-[AG]-V-x-[IV]-x-[AIV] Occurences: 6(6) GCH1_BACSU : 100- 144: prggk VtGLSKLARAVEavAkRPQLQERITsti--AeSiveTldPhGVmVvV eaehm GCH1_ECOLI : 131- 177: ipkds ViGLSKINRIVQffAqRPQVQERLTqqiliAlQtllGtnNvAVsIdA vhycv GCH1_HAEIN : 130- 176: ypkdw ViGLSKINRIVSffAqRPQVQERLTeqlltAfQtilEtdDvAVyVkA thfcv GCH1_HUMAN : 162- 206: lpnkq VlGLSKLARIVEiySrRLQVQERLTkqi--AvAiteAlrPaGVgVvV eathm GCH1_MOUSE : 153- 197: lpnkq VlGLSKLARIVEiySrRLQVQERLTkqi--AvAiteAlqPaGVgVvI eathm GCH1_MOUSE : 153- 199: lpnkq VlGLSKLARIVEiySrRLQVQERLTkqiavAiTealQpaGvGVvIeA thmcm GCH1_RAT : 153- 197: lpnkq VlGLSKLARIVEiySrRLQVQERLTkqi--AvAiteAlqPaGVgVvI eathm GCH1_RAT : 153- 199: lpnkq VlGLSKLARIVEiySrRLQVQERLTkqiavAiTealQpaGvGVvIeA thmcm H 8: 101.6536 6( 6) G-L-S-K-[IL]-[AN]-R-[AI]-V-[EQS]-x(2)-[AS]-x-R-[LP]-Q-[LV]-Q-E-R-[IL]-T-x(3,5)-A-x-[AQST]-x(3)-[AEGQT]-x(2)-[DGNP]-x-[AG]-V-x-[IV]-x-[AIV]-x(4)-[MV] Occurences: 6(6) GCH1_BACSU : 102- 149: ggkvt GLSKLARAVEavAkRPQLQERITsti--AeSiveTldPhGVmVvVeaehM cmtmr GCH1_ECOLI : 133- 182: kdsvi GLSKINRIVQffAqRPQVQERLTqqiliAlQtllGtnNvAVsIdAvhycV kargi GCH1_HAEIN : 132- 181: kdwvi GLSKINRIVSffAqRPQVQERLTeqlltAfQtilEtdDvAVyVkAthfcV kargi GCH1_HUMAN : 164- 211: nkqvl GLSKLARIVEiySrRLQVQERLTkqi--AvAiteAlrPaGVgVvVeathM cmvmr GCH1_MOUSE : 155- 202: nkqvl GLSKLARIVEiySrRLQVQERLTkqi--AvAiteAlqPaGVgVvIeathM cmvmr GCH1_MOUSE : 155- 204: nkqvl GLSKLARIVEiySrRLQVQERLTkqiavAiTealQpaGvGVvIeAthmcM vmrgv GCH1_RAT : 155- 202: nkqvl GLSKLARIVEiySrRLQVQERLTkqi--AvAiteAlqPaGVgVvIeathM cmvmr GCH1_RAT : 155- 204: nkqvl GLSKLARIVEiySrRLQVQERLTkqiavAiTealQpaGvGVvIeAthmcM vmrgv I 9: 97.4836 6( 6) L-S-K-[IL]-[AN]-R-[AI]-V-[EQS]-x(2)-[AS]-x-R-[LP]-Q-[LV]-Q-E-R-[IL]-T-x(3,5)-A-x-[AQST]-x(3)-[AEGQT]-x(2)-[DGNP]-x-[AG]-V-x-[IV]-x-[AIV]-x(4)-[MV] Occurences: 6(6) GCH1_BACSU : 103- 149: gkvtg LSKLARAVEavAkRPQLQERITsti--AeSiveTldPhGVmVvVeaehM cmtmr GCH1_ECOLI : 134- 182: dsvig LSKINRIVQffAqRPQVQERLTqqiliAlQtllGtnNvAVsIdAvhycV kargi GCH1_HAEIN : 133- 181: dwvig LSKINRIVSffAqRPQVQERLTeqlltAfQtilEtdDvAVyVkAthfcV kargi GCH1_HUMAN : 165- 211: kqvlg LSKLARIVEiySrRLQVQERLTkqi--AvAiteAlrPaGVgVvVeathM cmvmr GCH1_MOUSE : 156- 202: kqvlg LSKLARIVEiySrRLQVQERLTkqi--AvAiteAlqPaGVgVvIeathM cmvmr GCH1_MOUSE : 156- 204: kqvlg LSKLARIVEiySrRLQVQERLTkqiavAiTealQpaGvGVvIeAthmcM vmrgv GCH1_RAT : 156- 202: kqvlg LSKLARIVEiySrRLQVQERLTkqi--AvAiteAlqPaGVgVvIeathM cmvmr GCH1_RAT : 156- 204: kqvlg LSKLARIVEiySrRLQVQERLTkqiavAiTealQpaGvGVvIeAthmcM vmrgv J 10: 93.3135 6( 6) S-K-[IL]-[AN]-R-[AI]-V-[EQS]-x(2)-[AS]-x-R-[LP]-Q-[LV]-Q-E-R-[IL]-T-x(3,5)-A-x-[AQST]-x(3)-[AEGQT]-x(2)-[DGNP]-x-[AG]-V-x-[IV]-x-[AIV]-x(4)-[MV] Occurences: 6(6) GCH1_BACSU : 104- 149: kvtgl SKLARAVEavAkRPQLQERITsti--AeSiveTldPhGVmVvVeaehM cmtmr GCH1_ECOLI : 135- 182: svigl SKINRIVQffAqRPQVQERLTqqiliAlQtllGtnNvAVsIdAvhycV kargi GCH1_HAEIN : 134- 181: wvigl SKINRIVSffAqRPQVQERLTeqlltAfQtilEtdDvAVyVkAthfcV kargi GCH1_HUMAN : 166- 211: qvlgl SKLARIVEiySrRLQVQERLTkqi--AvAiteAlrPaGVgVvVeathM cmvmr GCH1_MOUSE : 157- 202: qvlgl SKLARIVEiySrRLQVQERLTkqi--AvAiteAlqPaGVgVvIeathM cmvmr GCH1_MOUSE : 157- 204: qvlgl SKLARIVEiySrRLQVQERLTkqiavAiTealQpaGvGVvIeAthmcM vmrgv GCH1_RAT : 157- 202: qvlgl SKLARIVEiySrRLQVQERLTkqi--AvAiteAlqPaGVgVvIeathM cmvmr GCH1_RAT : 157- 204: qvlgl SKLARIVEiySrRLQVQERLTkqiavAiTealQpaGvGVvIeAthmcM vmrgv K 11: 90.6961 7( 6) E-x(3,4)-V-x-D-I-[ADT]-[FLM]-x-S-x-C-E-H-H-[FL]-V-[PT]-[FI]-x-G-[KR]-[AV]-x-[IV]-[AG]-Y-x-P-x(4)-[ILV]-[GT]-[GL] Occurences: 7(6) GCH1_BACSU : 64- 102: fgenh EelvlVkDIAFhSmCEHHLVPFyGKAhVAYiPrggkVTG lskla GCH1_BACSU : 65- 102: genhe Elvl-VkDIAFhSmCEHHLVPFyGKAhVAYiPrggkVTG lskla GCH1_ECOLI : 97- 134: kmkvd Emvt-VrDITLtStCEHHFVTIdGKAtVAYiPkdsvIGL skinr GCH1_HAEIN : 96- 133: qmkvs Emvq-VnDITLtStCEHHFVTIdGKVcVAYyPkdwvIGL skinr GCH1_HUMAN : 128- 165: dedhd Emvi-VkDIDMfSmCEHHLVPFvGKVhIGYlPnkqvLGL sklar GCH1_MOUSE : 119- 156: dedhd Emvi-VkDIDMfSmCEHHLVPFvGRVhIGYlPnkqvLGL sklar GCH1_RAT : 119- 156: dedhd Emvi-VkDIDMfSmCEHHLVPFvGRVhIGYlPnkqvLGL sklar L 12: 89.1435 6( 6) K-[IL]-[AN]-R-[AI]-V-[EQS]-x(2)-[AS]-x-R-[LP]-Q-[LV]-Q-E-R-[IL]-T-x(3,5)-A-x-[AQST]-x(3)-[AEGQT]-x(2)-[DGNP]-x-[AG]-V-x-[IV]-x-[AIV]-x(4)-[MV] Occurences: 6(6) GCH1_BACSU : 105- 149: vtgls KLARAVEavAkRPQLQERITsti--AeSiveTldPhGVmVvVeaehM cmtmr GCH1_ECOLI : 136- 182: vigls KINRIVQffAqRPQVQERLTqqiliAlQtllGtnNvAVsIdAvhycV kargi GCH1_HAEIN : 135- 181: vigls KINRIVSffAqRPQVQERLTeqlltAfQtilEtdDvAVyVkAthfcV kargi GCH1_HUMAN : 167- 211: vlgls KLARIVEiySrRLQVQERLTkqi--AvAiteAlrPaGVgVvVeathM cmvmr GCH1_MOUSE : 158- 202: vlgls KLARIVEiySrRLQVQERLTkqi--AvAiteAlqPaGVgVvIeathM cmvmr GCH1_MOUSE : 158- 204: vlgls KLARIVEiySrRLQVQERLTkqiavAiTealQpaGvGVvIeAthmcM vmrgv GCH1_RAT : 158- 202: vlgls KLARIVEiySrRLQVQERLTkqi--AvAiteAlqPaGVgVvIeathM cmvmr GCH1_RAT : 158- 204: vlgls KLARIVEiySrRLQVQERLTkqiavAiTealQpaGvGVvIeAthmcM vmrgv M 13: 88.2742 6( 6) E-[LM]-V-x-V-x-D-I-[ADT]-[FLM]-x-S-x-C-E-H-H-[FL]-V-[PT]-[FI]-x-G-x(1,3)-V-x(1,3)-Y-x-P-x(4)-[ILV]-[GT]-[GL] Occurences: 6(6) GCH1_BACSU : 65- 102: genhe ELVlVkDIAFhSmCEHHLVPFyGkahVa--YiPrggkVTG lskla GCH1_ECOLI : 97- 134: kmkvd EMVtVrDITLtStCEHHFVTIdGkatVa--YiPkdsvIGL skinr GCH1_HAEIN : 96- 133: qmkvs EMVqVnDITLtStCEHHFVTIdGkvcVa--YyPkdwvIGL skinr GCH1_HAEIN : 96- 133: qmkvs EMVqVnDITLtStCEHHFVTIdGk--VcvaYyPkdwvIGL skinr GCH1_HUMAN : 128- 165: dedhd EMViVkDIDMfSmCEHHLVPFvGk--VhigYlPnkqvLGL sklar GCH1_MOUSE : 119- 156: dedhd EMViVkDIDMfSmCEHHLVPFvGr--VhigYlPnkqvLGL sklar GCH1_RAT : 119- 156: dedhd EMViVkDIDMfSmCEHHLVPFvGr--VhigYlPnkqvLGL sklar N 14: 80.5372 6( 6) V-x-V-x-D-I-[ADT]-[FLM]-x-S-x-C-E-H-H-[FL]-V-[PT]-[FI]-x-G-x(1,3)-V-x(1,3)-Y-x-P-x(4)-[ILV]-[GT]-[GL] Occurences: 6(6) GCH1_BACSU : 67- 102: nheel VlVkDIAFhSmCEHHLVPFyGkahVa--YiPrggkVTG lskla GCH1_ECOLI : 99- 134: kvdem VtVrDITLtStCEHHFVTIdGkatVa--YiPkdsvIGL skinr GCH1_HAEIN : 98- 133: kvsem VqVnDITLtStCEHHFVTIdGkvcVa--YyPkdwvIGL skinr GCH1_HAEIN : 98- 133: kvsem VqVnDITLtStCEHHFVTIdGk--VcvaYyPkdwvIGL skinr GCH1_HUMAN : 130- 165: dhdem ViVkDIDMfSmCEHHLVPFvGk--VhigYlPnkqvLGL sklar GCH1_MOUSE : 121- 156: dhdem ViVkDIDMfSmCEHHLVPFvGr--VhigYlPnkqvLGL sklar GCH1_RAT : 121- 156: dhdem ViVkDIDMfSmCEHHLVPFvGr--VhigYlPnkqvLGL sklar O 15: 78.4459 7( 6) E-x(1,2)-V-x-V-x-D-I-[ADT]-[FLM]-x-S-x-C-E-H-H-[FL]-V-[PT]-[FI]-x-G-x(1,3)-V-x(2)-[AGI]-x(2)-[DGP]-x(3)-[GTV]-[GIL] Occurences: 7(6) GCH1_BACSU : 64- 102: fgenh EelVlVkDIAFhSmCEHHLVPFyGkahVayIprGgkvTG lskla GCH1_BACSU : 65- 102: genhe El-VlVkDIAFhSmCEHHLVPFyGkahVayIprGgkvTG lskla GCH1_ECOLI : 97- 134: kmkvd Em-VtVrDITLtStCEHHFVTIdGkatVayIpkDsviGL skinr GCH1_HAEIN : 96- 131: qmkvs Em-VqVnDITLtStCEHHFVTIdGk--VcvAyyPkdwVI glski GCH1_HUMAN : 128- 163: dedhd Em-ViVkDIDMfSmCEHHLVPFvGk--VhiGylPnkqVL glskl GCH1_MOUSE : 119- 154: dedhd Em-ViVkDIDMfSmCEHHLVPFvGr--VhiGylPnkqVL glskl GCH1_RAT : 119- 154: dedhd Em-ViVkDIDMfSmCEHHLVPFvGr--VhiGylPnkqVL glskl P 16: 78.4178 6( 6) R-[AI]-V-[EQS]-x(2)-[AS]-x-R-[LP]-Q-[LV]-Q-E-R-[IL]-T-x(3,5)-A-x-[AQST]-x(3)-[AEGQT]-x(2)-[DGNP]-x-[AG]-V-x-[IV]-x-[AIV]-x(4)-[MV] Occurences: 6(6) GCH1_BACSU : 108- 149: lskla RAVEavAkRPQLQERITsti--AeSiveTldPhGVmVvVeaehM cmtmr GCH1_ECOLI : 139- 182: lskin RIVQffAqRPQVQERLTqqiliAlQtllGtnNvAVsIdAvhycV kargi GCH1_HAEIN : 138- 181: lskin RIVSffAqRPQVQERLTeqlltAfQtilEtdDvAVyVkAthfcV kargi GCH1_HUMAN : 170- 211: lskla RIVEiySrRLQVQERLTkqi--AvAiteAlrPaGVgVvVeathM cmvmr GCH1_MOUSE : 161- 202: lskla RIVEiySrRLQVQERLTkqi--AvAiteAlqPaGVgVvIeathM cmvmr GCH1_MOUSE : 161- 204: lskla RIVEiySrRLQVQERLTkqiavAiTealQpaGvGVvIeAthmcM vmrgv GCH1_RAT : 161- 202: lskla RIVEiySrRLQVQERLTkqi--AvAiteAlqPaGVgVvIeathM cmvmr GCH1_RAT : 161- 204: lskla RIVEiySrRLQVQERLTkqiavAiTealQpaGvGVvIeAthmcM vmrgv Q 17: 76.3672 6( 6) V-x-D-I-[ADT]-[FLM]-x-S-x-C-E-H-H-[FL]-V-[PT]-[FI]-x-G-x(1,3)-V-x(1,3)-Y-x-P-x(4)-[ILV]-[GT]-[GL] Occurences: 6(6) GCH1_BACSU : 69- 102: eelvl VkDIAFhSmCEHHLVPFyGkahVa--YiPrggkVTG lskla GCH1_ECOLI : 101- 134: demvt VrDITLtStCEHHFVTIdGkatVa--YiPkdsvIGL skinr GCH1_HAEIN : 100- 133: semvq VnDITLtStCEHHFVTIdGkvcVa--YyPkdwvIGL skinr GCH1_HAEIN : 100- 133: semvq VnDITLtStCEHHFVTIdGk--VcvaYyPkdwvIGL skinr GCH1_HUMAN : 132- 165: demvi VkDIDMfSmCEHHLVPFvGk--VhigYlPnkqvLGL sklar GCH1_MOUSE : 123- 156: demvi VkDIDMfSmCEHHLVPFvGr--VhigYlPnkqvLGL sklar GCH1_RAT : 123- 156: demvi VkDIDMfSmCEHHLVPFvGr--VhigYlPnkqvLGL sklar R 18: 75.0716 6( 6) E-[LM]-V-x-V-x-D-I-[ADT]-[FLM]-x-S-x-C-E-H-H-[FL]-V-[PT]-[FI]-x-G-x(1,3)-V-x(1,3)-Y Occurences: 6(6) GCH1_BACSU : 65- 93: genhe ELVlVkDIAFhSmCEHHLVPFyGkahVa--Y iprgg GCH1_ECOLI : 97- 125: kmkvd EMVtVrDITLtStCEHHFVTIdGkatVa--Y ipkds GCH1_HAEIN : 96- 124: qmkvs EMVqVnDITLtStCEHHFVTIdGkvcVa--Y ypkdw GCH1_HAEIN : 96- 124: qmkvs EMVqVnDITLtStCEHHFVTIdGk--VcvaY ypkdw GCH1_HUMAN : 128- 156: dedhd EMViVkDIDMfSmCEHHLVPFvGk--VhigY lpnkq GCH1_MOUSE : 119- 147: dedhd EMViVkDIDMfSmCEHHLVPFvGr--VhigY lpnkq GCH1_RAT : 119- 147: dedhd EMViVkDIDMfSmCEHHLVPFvGr--VhigY lpnkq S 19: 72.1971 6( 6) D-I-[ADT]-[FLM]-x-S-x-C-E-H-H-[FL]-V-[PT]-[FI]-x-G-x(1,3)-V-x(1,3)-Y-x-P-x(4)-[ILV]-[GT]-[GL] Occurences: 6(6) GCH1_BACSU : 71- 102: lvlvk DIAFhSmCEHHLVPFyGkahVa--YiPrggkVTG lskla GCH1_ECOLI : 103- 134: mvtvr DITLtStCEHHFVTIdGkatVa--YiPkdsvIGL skinr GCH1_HAEIN : 102- 133: mvqvn DITLtStCEHHFVTIdGkvcVa--YyPkdwvIGL skinr GCH1_HAEIN : 102- 133: mvqvn DITLtStCEHHFVTIdGk--VcvaYyPkdwvIGL skinr GCH1_HUMAN : 134- 165: mvivk DIDMfSmCEHHLVPFvGk--VhigYlPnkqvLGL sklar GCH1_MOUSE : 125- 156: mvivk DIDMfSmCEHHLVPFvGr--VhigYlPnkqvLGL sklar GCH1_RAT : 125- 156: mvivk DIDMfSmCEHHLVPFvGr--VhigYlPnkqvLGL sklar T 20: 68.0271 6( 6) I-[ADT]-[FLM]-x-S-x-C-E-H-H-[FL]-V-[PT]-[FI]-x-G-x(1,3)-V-x(1,3)-Y-x-P-x(4)-[ILV]-[GT]-[GL] Occurences: 6(6) GCH1_BACSU : 72- 102: vlvkd IAFhSmCEHHLVPFyGkahVa--YiPrggkVTG lskla GCH1_ECOLI : 104- 134: vtvrd ITLtStCEHHFVTIdGkatVa--YiPkdsvIGL skinr GCH1_HAEIN : 103- 133: vqvnd ITLtStCEHHFVTIdGkvcVa--YyPkdwvIGL skinr GCH1_HAEIN : 103- 133: vqvnd ITLtStCEHHFVTIdGk--VcvaYyPkdwvIGL skinr GCH1_HUMAN : 135- 165: vivkd IDMfSmCEHHLVPFvGk--VhigYlPnkqvLGL sklar GCH1_MOUSE : 126- 156: vivkd IDMfSmCEHHLVPFvGr--VhigYlPnkqvLGL sklar GCH1_RAT : 126- 156: vivkd IDMfSmCEHHLVPFvGr--VhigYlPnkqvLGL sklar Number of patterns evaluated by Pratt:5974 Total running time: 2 seconds