------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file GTP1_OBG PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GTP1_OBG.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: 128U_DROME 368 DRG_MOUSE 367 DRG_XENLA 367 GTP1_SCHPO 364 OBG_BACSU 428 YAD6_YEAST 369 YHBZ_ECOLI 390 YHBZ_HAEIN 390 YKK3_CAEEL 573 YRB1_HALCU 370 Pratt run started at Thu Feb 6 19:43:07 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 32.8604 10( 10) P-G-x-I-x-G-A-x(2)-G-x-G-x(0,1)-G 2: 32.3604 10( 10) D-x-P-G-x(0,1)-I-x(1,2)-G-A-x(2)-G-x-G 3: 28.6904 10( 10) G-x-I-x-G-A-x(2)-G-x-G-x(0,1)-G 4: 28.1904 10( 10) P-G-x(0,1)-I-x(1,2)-G-A-x(2)-G-x-G 5: 27.6904 13( 10) A-x(0,1)-Y-x-F-T-T-L-x(1,3)-P 6: 27.1904 10( 10) Y-x-F-T-T-L-x(1,3)-P-x(0,2)-G 7: 25.0203 10( 10) A-x(5)-G-x-P-x(2)-G-K-S 8: 24.5203 10( 10) I-x-G-A-x(2)-G-x-G-x(0,1)-G 9: 24.0203 16( 10) I-x(1,2)-G-A-x(2)-G-x-G-x(0,1)-G 10: 24.0203 10( 10) G-x(0,1)-I-x(1,2)-G-A-x(2)-G-x-G 11: 23.5203 10( 10) L-x(0,2)-I-x(1,2)-G-A-x(2)-G-x-G 12: 23.0203 10( 10) F-T-T-L-x(1,3)-P-x(0,2)-G 13: 20.8503 10( 10) G-x-P-x(2)-G-K-S 14: 20.3503 10( 10) G-A-x(2)-G-x-G-x(0,1)-G 15: 20.3503 10( 10) A-x(4)-L-x(2,3)-G-x(3)-G-x(3)-G 16: 19.8503 16( 10) L-x(1,3)-G-x(3)-G-A-x(2)-G 17: 19.8503 10( 10) I-x(2)-L-x(2,3)-G-x(4,5)-A-x(2)-G 18: 19.3503 10( 10) G-x(3,5)-V-x(0,1)-A-x(2)-G-x(4)-G 19: 19.3503 13( 10) G-x(2,4)-V-x(0,1)-A-x(2)-G-x(4)-G 20: 18.8503 10( 10) T-T-L-x(1,3)-P-x(0,2)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 114.7713 10( 10) A-x-[IV]-[AG]-[FLM]-[ILV]-G-[FLM]-P-[NS]-[AV]-G-K-S-[ST]-[FL]-[IL]-[NRS]-x-[ILMV]-[AST]-x-[ATV]-x-[PS]-x(2)-[AG]-[ADEGS]-Y-x-F-T-T-L-[NTV]-[ACPTV]-x-[LP]-G-x-[ILV]-x(3)-[DGN]-[AEGS] B 2: 113.4751 10( 10) G-[FLM]-P-[NS]-[AV]-G-K-S-[ST]-[FL]-[IL]-[NRS]-x-[ILMV]-[AST]-x-[ATV]-x-[PS]-x(2)-[AG]-[ADEGS]-Y-x-F-T-T-L-[NTV]-[ACPTV]-x-[LP]-G-x-[ILV]-x(3)-[DGN]-[AEGS]-x(3)-[LMV]-[LMV]-[AD]-x-[ILP]-[GP] C 3: 77.9350 13( 10) A-x(0,1)-Y-x-F-T-T-L-x(1,3)-P-[GNS]-x-[GILV]-x(4)-[AD]-x(4)-[FL]-[DV]-[LMV]-[AP]-[DG]-[IL]-[IP]-[DEG]-[GL]-[AI]-x-[DGQ]-[AG]-x-[DEGQ]-x(4)-[GIV] D 4: 72.8027 10( 10) P-G-[IL]-I-[DE]-G-A-x-[DEGQ]-G-x-G-x(0,1)-G-x-[EQR]-x-[ILV]-x(2)-[AIL]-[EKR]-x-[ACT]-[DNR]-[LV]-[ILV]-[FILV]-x-[ILMV]-[FILV]-[DGS] E 5: 68.6327 10( 10) G-[IL]-I-[DE]-G-A-x-[DEGQ]-G-x-G-x(0,1)-G-x-[EQR]-x-[ILV]-x(2)-[AIL]-[EKR]-x-[ACT]-[DNR]-[LV]-[ILV]-[FILV]-x-[ILMV]-[FILV]-[DGS] F 6: 66.7516 10( 10) Y-x-F-T-T-L-x(1,3)-P-x(0,2)-G-x-[ILV]-x(3)-[DGN]-[AEGS]-x(3)-[LMV]-[LMV]-[AD]-x-[ILP]-[GP]-[GIL]-[IL]-x-[EG]-[AG]-x(2)-[DEGQ]-x-[AGV] G 7: 62.5816 10( 10) F-T-T-L-x(1,3)-P-x(0,2)-G-x-[ILV]-x(3)-[DGN]-[AEGS]-x(3)-[LMV]-[LMV]-[AD]-x-[ILP]-[GP]-[GIL]-[IL]-x-[EG]-[AG]-x(2)-[DEGQ]-x-[AGV] H 8: 61.1760 10( 10) I-[DE]-G-A-x-[DEGQ]-G-x-G-x(0,1)-G-x-[EQR]-x-[ILV]-x(2)-[AIL]-[EKR]-x-[ACT]-[DNR]-[LV]-[ILV]-[FILV]-x-[ILMV]-[FILV]-[DGS] I 9: 58.4115 10( 10) T-T-L-x(1,3)-P-x(0,2)-G-x-[ILV]-x(3)-[DGN]-[AEGS]-x(3)-[LMV]-[LMV]-[AD]-x-[ILP]-[GP]-[GIL]-[IL]-x-[EG]-[AG]-x(2)-[DEGQ]-x-[AGV] J 10: 57.5054 16( 10) I-x(1,2)-G-A-x-[DEGQ]-G-x-G-x(0,1)-G-x-[EQR]-x-[ILV]-x(2)-[AIL]-[EKR]-x-[ACT]-[DNR]-[LV]-[ILV]-[FILV]-x-[ILMV]-[FILV]-[DGS] K 11: 53.8354 10( 10) G-A-x-[DEGQ]-G-x-G-x(0,1)-G-x-[EQR]-x-[ILV]-x(2)-[AIL]-[EKR]-x-[ACT]-[DNR]-[LV]-[ILV]-[FILV]-x-[ILMV]-[FILV]-[DGS] L 12: 39.9059 10( 10) D-[ILV]-P-G-x(0,1)-I-x(1,2)-G-A-x-[DEGQ]-G-x-G-x(4)-[FIV] M 13: 35.2751 10( 10) A-x-[IL]-[PQ]-x-L-x(2,3)-G-[AIL]-x-[DEQ]-G-[AV]-x(2)-G N 14: 33.0740 10( 10) P-G-x(0,1)-I-x(1,2)-G-A-x-[DEGQ]-G-x-G-x(4)-[FIV] O 15: 31.0242 10( 10) G-x(3,5)-V-x(0,1)-A-x(2)-G-x(4)-G-x-[STV]-x-[FL]-x-[NST]-x(4)-[AT] P 16: 31.0242 13( 10) G-x(2,4)-V-x(0,1)-A-x(2)-G-x(4)-G-x-[STV]-x-[FL]-x-[NST]-x(4)-[AT] Q 17: 28.9874 16( 10) L-x(1,3)-G-[AIL]-[AI]-[DE]-G-A-x(2)-G R 18: 28.9040 10( 10) G-x(0,1)-I-x(1,2)-G-A-x-[DEGQ]-G-x-G-x(4)-[FIV] S 19: 28.4040 10( 10) L-x(0,2)-I-x(1,2)-G-A-x-[DEGQ]-G-x-G-x(4)-[FIV] T 20: 22.5121 10( 10) D-[ILV]-P-G-x(0,1)-I-x(1,2)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 114.7713 10( 10) A-x-[IV]-[AG]-[FLM]-[ILV]-G-[FLM]-P-[NS]-[AV]-G-K-S-[ST]-[FL]-[IL]-[NRS]-x-[ILMV]-[AST]-x-[ATV]-x-[PS]-x(2)-[AG]-[ADEGS]-Y-x-F-T-T-L-[NTV]-[ACPTV]-x-[LP]-G-x-[ILV]-x(3)-[DGN]-[AEGS] Occurences: 10(10) 128U_DROME : 65- 111: aktgd ArVGFVGFPSVGKSTLLSnLAgVySevAAYeFTTLTTvPGcIkykGA kiqll DRG_MOUSE : 65- 111: aktgd ArIGFVGFPSVGKSTLLSnLAgVySevAAYeFTTLTTvPGvIrykGA kiqll DRG_XENLA : 65- 111: aktgd ArIGFVGFPSVGKSTLLSnLAgVySevAAYeFTTLTTvPGvVrykGA kiqll GTP1_SCHPO : 63- 109: lksgd ArVAFIGFPSVGKSTLLSaITkTkSatASYeFTTLTAiPGvLeydGA eiqml OBG_BACSU : 159- 205: elkvl AdVGLVGFPSVGKSTLLSvVSsAkPkiADYhFTTLVPnLGmVetdDG rsfvm YAD6_YEAST : 66- 112: artgv AsVGFVGFPSVGKSTLLSkLTgTeSeaAEYeFTTLVTvPGvIrykGA kiqml YHBZ_ECOLI : 160- 206: elmll AdVGMLGMPNAGKSTFIRaVSaAkPkvADYpFTTLVPsLGvVrmdNE ksfvv YHBZ_HAEIN : 160- 206: elmll AdVGMLGLPNAGKSTFIRaVSaAkPkvADYpFTTLVPsLGvVkvdDS hsfvv YKK3_CAEEL : 63- 109: mksgd ArVAMVGFPSVGKSTLLSsMTsThSeaAGYeFTTLTCiPGvIsynGA niqll YRB1_HALCU : 62- 108: eqhgd AtVALVGFPSVGKSSLINaMTnAdSevGAYeFTTLNVnPGmLeyrGA niqll B 2: 113.4751 10( 10) G-[FLM]-P-[NS]-[AV]-G-K-S-[ST]-[FL]-[IL]-[NRS]-x-[ILMV]-[AST]-x-[ATV]-x-[PS]-x(2)-[AG]-[ADEGS]-Y-x-F-T-T-L-[NTV]-[ACPTV]-x-[LP]-G-x-[ILV]-x(3)-[DGN]-[AEGS]-x(3)-[LMV]-[LMV]-[AD]-x-[ILP]-[GP] Occurences: 10(10) 128U_DROME : 71- 120: rvgfv GFPSVGKSTLLSnLAgVySevAAYeFTTLTTvPGcIkykGAkiqLLDlPG iiega DRG_MOUSE : 71- 120: rigfv GFPSVGKSTLLSnLAgVySevAAYeFTTLTTvPGvIrykGAkiqLLDlPG iiega DRG_XENLA : 71- 120: rigfv GFPSVGKSTLLSnLAgVySevAAYeFTTLTTvPGvVrykGAkiqLLDlPG iiega GTP1_SCHPO : 69- 118: rvafi GFPSVGKSTLLSaITkTkSatASYeFTTLTAiPGvLeydGAeiqMLDlPG iiega OBG_BACSU : 165- 214: dvglv GFPSVGKSTLLSvVSsAkPkiADYhFTTLVPnLGmVetdDGrsfVMAdLP glieg YAD6_YEAST : 72- 121: svgfv GFPSVGKSTLLSkLTgTeSeaAEYeFTTLVTvPGvIrykGAkiqMLDlPG iidga YHBZ_ECOLI : 166- 215: dvgml GMPNAGKSTFIRaVSaAkPkvADYpFTTLVPsLGvVrmdNEksfVVAdIP glieg YHBZ_HAEIN : 166- 215: dvgml GLPNAGKSTFIRaVSaAkPkvADYpFTTLVPsLGvVkvdDShsfVVAdIP glieg YKK3_CAEEL : 69- 118: rvamv GFPSVGKSTLLSsMTsThSeaAGYeFTTLTCiPGvIsynGAniqLLDlPG iiega YRB1_HALCU : 68- 117: tvalv GFPSVGKSSLINaMTnAdSevGAYeFTTLNVnPGmLeyrGAniqLLDvPG liega C 3: 77.9350 13( 10) A-x(0,1)-Y-x-F-T-T-L-x(1,3)-P-[GNS]-x-[GILV]-x(4)-[AD]-x(4)-[FL]-[DV]-[LMV]-[AP]-[DG]-[IL]-[IP]-[DEG]-[GL]-[AI]-x-[DGQ]-[AG]-x-[DEGQ]-x(4)-[GIV] Occurences: 13(10) 128U_DROME : 92- 135: vysev AaYeFTTLttvPGcIkykgAkiqlLDLPGIIEGAkDGkGrgrqV iavar 128U_DROME : 93- 135: yseva A-YeFTTLttvPGcIkykgAkiqlLDLPGIIEGAkDGkGrgrqV iavar DRG_MOUSE : 92- 135: vysev AaYeFTTLttvPGvIrykgAkiqlLDLPGIIEGAkDGkGrgrqV iavar DRG_MOUSE : 93- 135: yseva A-YeFTTLttvPGvIrykgAkiqlLDLPGIIEGAkDGkGrgrqV iavar DRG_XENLA : 92- 135: vysev AaYeFTTLttvPGvVrykgAkiqlLDLPGIIEGAkDGkGrgrqV iavar DRG_XENLA : 93- 135: yseva A-YeFTTLttvPGvVrykgAkiqlLDLPGIIEGAkDGkGrgrqV iavar GTP1_SCHPO : 90- 133: tksat AsYeFTTLtaiPGvLeydgAeiqmLDLPGIIEGAsQGrGgrqaV saart OBG_BACSU : 186- 227: akpki AdYhFTTLv--PNlGmvetDdgrsFVMADLPGLIeGAhQgvglG hqflr YAD6_YEAST : 93- 136: tesea AeYeFTTLvtvPGvIrykgAkiqmLDLPGIIDGAkDGrGrgkqV iavar YHBZ_ECOLI : 187- 228: akpkv AdYpFTTLv--PSlGvvrmDneksFVVADIPGLIeGAaEgaglG irflk YHBZ_HAEIN : 187- 228: akpkv AdYpFTTLv--PSlGvvkvDdshsFVVADIPGLIeGAaDgaglG irflk YKK3_CAEEL : 90- 133: thsea AgYeFTTLtciPGvIsyngAniqlLDLPGIIEGAsQGkGrgrqV isvak YRB1_HALCU : 90- 132: dsevg A-YeFTTLnvnPGmLeyrgAniqlLDVPGLIEGAaGGrGggkeI lsvir D 4: 72.8027 10( 10) P-G-[IL]-I-[DE]-G-A-x-[DEGQ]-G-x-G-x(0,1)-G-x-[EQR]-x-[ILV]-x(2)-[AIL]-[EKR]-x-[ACT]-[DNR]-[LV]-[ILV]-[FILV]-x-[ILMV]-[FILV]-[DGS] Occurences: 10(10) 128U_DROME : 119- 150: qlldl PGIIEGAkDGkGrGrQvIavARtCNLIFmVLD clkpl DRG_MOUSE : 119- 150: qlldl PGIIEGAkDGkGrGrQvIavARtCNLILiVLD vlkpl DRG_XENLA : 119- 150: qlldl PGIIEGAkDGkGrGrQvIavARtCNLILiVLD vlkpl GTP1_SCHPO : 117- 147: qmldl PGIIEGAsQGrG-GrQaVsaARtADLILmVFG cykkl OBG_BACSU : 214- 245: vmadl PGLIEGAhQGvGlGhQfLrhIErTRVIVhVID msgle YAD6_YEAST : 120- 151: qmldl PGIIDGAkDGrGrGkQvIavARtCNLLFiILD vnkpl YHBZ_ECOLI : 215- 246: vvadi PGLIEGAaEGaGlGiRfLkhLErCRVLLhLID idpid YHBZ_HAEIN : 215- 246: vvadi PGLIEGAaDGaGlGiRfLkhLErCRVLIhLVD iapid YKK3_CAEEL : 117- 148: qlldl PGIIEGAsQGkGrGrQvIsvAKtADLILmMLD agksd YRB1_HALCU : 116- 147: qlldv PGLIEGAaGGrGgGkEiLsvIRgADLVIfVLS afeie E 5: 68.6327 10( 10) G-[IL]-I-[DE]-G-A-x-[DEGQ]-G-x-G-x(0,1)-G-x-[EQR]-x-[ILV]-x(2)-[AIL]-[EKR]-x-[ACT]-[DNR]-[LV]-[ILV]-[FILV]-x-[ILMV]-[FILV]-[DGS] Occurences: 10(10) 128U_DROME : 120- 150: lldlp GIIEGAkDGkGrGrQvIavARtCNLIFmVLD clkpl DRG_MOUSE : 120- 150: lldlp GIIEGAkDGkGrGrQvIavARtCNLILiVLD vlkpl DRG_XENLA : 120- 150: lldlp GIIEGAkDGkGrGrQvIavARtCNLILiVLD vlkpl GTP1_SCHPO : 118- 147: mldlp GIIEGAsQGrG-GrQaVsaARtADLILmVFG cykkl OBG_BACSU : 215- 245: madlp GLIEGAhQGvGlGhQfLrhIErTRVIVhVID msgle YAD6_YEAST : 121- 151: mldlp GIIDGAkDGrGrGkQvIavARtCNLLFiILD vnkpl YHBZ_ECOLI : 216- 246: vadip GLIEGAaEGaGlGiRfLkhLErCRVLLhLID idpid YHBZ_HAEIN : 216- 246: vadip GLIEGAaDGaGlGiRfLkhLErCRVLIhLVD iapid YKK3_CAEEL : 118- 148: lldlp GIIEGAsQGkGrGrQvIsvAKtADLILmMLD agksd YRB1_HALCU : 117- 147: lldvp GLIEGAaGGrGgGkEiLsvIRgADLVIfVLS afeie F 6: 66.7516 10( 10) Y-x-F-T-T-L-x(1,3)-P-x(0,2)-G-x-[ILV]-x(3)-[DGN]-[AEGS]-x(3)-[LMV]-[LMV]-[AD]-x-[ILP]-[GP]-[GIL]-[IL]-x-[EG]-[AG]-x(2)-[DEGQ]-x-[AGV] Occurences: 10(10) 128U_DROME : 94- 130: sevaa YeFTTLttvP--GcIkykGAkiqLLDlPGIIeGAkdGkG rgrqv DRG_MOUSE : 94- 130: sevaa YeFTTLttvP--GvIrykGAkiqLLDlPGIIeGAkdGkG rgrqv DRG_XENLA : 94- 130: sevaa YeFTTLttvP--GvVrykGAkiqLLDlPGIIeGAkdGkG rgrqv GTP1_SCHPO : 92- 128: satas YeFTTLtaiP--GvLeydGAeiqMLDlPGIIeGAsqGrG grqav OBG_BACSU : 188- 224: pkiad YhFTTLv--PnlGmVetdDGrsfVMAdLPGLiEGahQgV glghq YAD6_YEAST : 95- 131: seaae YeFTTLvtvP--GvIrykGAkiqMLDlPGIIdGAkdGrG rgkqv YHBZ_ECOLI : 189- 225: pkvad YpFTTLv--PslGvVrmdNEksfVVAdIPGLiEGaaEgA glgir YHBZ_HAEIN : 189- 225: pkvad YpFTTLv--PslGvVkvdDShsfVVAdIPGLiEGaaDgA glgir YKK3_CAEEL : 92- 128: seaag YeFTTLtciP--GvIsynGAniqLLDlPGIIeGAsqGkG rgrqv YRB1_HALCU : 91- 127: sevga YeFTTLnvnP--GmLeyrGAniqLLDvPGLIeGAagGrG ggkei G 7: 62.5816 10( 10) F-T-T-L-x(1,3)-P-x(0,2)-G-x-[ILV]-x(3)-[DGN]-[AEGS]-x(3)-[LMV]-[LMV]-[AD]-x-[ILP]-[GP]-[GIL]-[IL]-x-[EG]-[AG]-x(2)-[DEGQ]-x-[AGV] Occurences: 10(10) 128U_DROME : 96- 130: vaaye FTTLttvP--GcIkykGAkiqLLDlPGIIeGAkdGkG rgrqv DRG_MOUSE : 96- 130: vaaye FTTLttvP--GvIrykGAkiqLLDlPGIIeGAkdGkG rgrqv DRG_XENLA : 96- 130: vaaye FTTLttvP--GvVrykGAkiqLLDlPGIIeGAkdGkG rgrqv GTP1_SCHPO : 94- 128: tasye FTTLtaiP--GvLeydGAeiqMLDlPGIIeGAsqGrG grqav OBG_BACSU : 190- 224: iadyh FTTLv--PnlGmVetdDGrsfVMAdLPGLiEGahQgV glghq YAD6_YEAST : 97- 131: aaeye FTTLvtvP--GvIrykGAkiqMLDlPGIIdGAkdGrG rgkqv YHBZ_ECOLI : 191- 225: vadyp FTTLv--PslGvVrmdNEksfVVAdIPGLiEGaaEgA glgir YHBZ_HAEIN : 191- 225: vadyp FTTLv--PslGvVkvdDShsfVVAdIPGLiEGaaDgA glgir YKK3_CAEEL : 94- 128: aagye FTTLtciP--GvIsynGAniqLLDlPGIIeGAsqGkG rgrqv YRB1_HALCU : 93- 127: vgaye FTTLnvnP--GmLeyrGAniqLLDvPGLIeGAagGrG ggkei H 8: 61.1760 10( 10) I-[DE]-G-A-x-[DEGQ]-G-x-G-x(0,1)-G-x-[EQR]-x-[ILV]-x(2)-[AIL]-[EKR]-x-[ACT]-[DNR]-[LV]-[ILV]-[FILV]-x-[ILMV]-[FILV]-[DGS] Occurences: 10(10) 128U_DROME : 122- 150: dlpgi IEGAkDGkGrGrQvIavARtCNLIFmVLD clkpl DRG_MOUSE : 122- 150: dlpgi IEGAkDGkGrGrQvIavARtCNLILiVLD vlkpl DRG_XENLA : 122- 150: dlpgi IEGAkDGkGrGrQvIavARtCNLILiVLD vlkpl GTP1_SCHPO : 120- 147: dlpgi IEGAsQGrG-GrQaVsaARtADLILmVFG cykkl OBG_BACSU : 217- 245: dlpgl IEGAhQGvGlGhQfLrhIErTRVIVhVID msgle YAD6_YEAST : 123- 151: dlpgi IDGAkDGrGrGkQvIavARtCNLLFiILD vnkpl YHBZ_ECOLI : 218- 246: dipgl IEGAaEGaGlGiRfLkhLErCRVLLhLID idpid YHBZ_HAEIN : 218- 246: dipgl IEGAaDGaGlGiRfLkhLErCRVLIhLVD iapid YKK3_CAEEL : 120- 148: dlpgi IEGAsQGkGrGrQvIsvAKtADLILmMLD agksd YRB1_HALCU : 119- 147: dvpgl IEGAaGGrGgGkEiLsvIRgADLVIfVLS afeie I 9: 58.4115 10( 10) T-T-L-x(1,3)-P-x(0,2)-G-x-[ILV]-x(3)-[DGN]-[AEGS]-x(3)-[LMV]-[LMV]-[AD]-x-[ILP]-[GP]-[GIL]-[IL]-x-[EG]-[AG]-x(2)-[DEGQ]-x-[AGV] Occurences: 10(10) 128U_DROME : 97- 130: aayef TTLttvP--GcIkykGAkiqLLDlPGIIeGAkdGkG rgrqv DRG_MOUSE : 97- 130: aayef TTLttvP--GvIrykGAkiqLLDlPGIIeGAkdGkG rgrqv DRG_XENLA : 97- 130: aayef TTLttvP--GvVrykGAkiqLLDlPGIIeGAkdGkG rgrqv GTP1_SCHPO : 95- 128: asyef TTLtaiP--GvLeydGAeiqMLDlPGIIeGAsqGrG grqav OBG_BACSU : 191- 224: adyhf TTLv--PnlGmVetdDGrsfVMAdLPGLiEGahQgV glghq YAD6_YEAST : 98- 131: aeyef TTLvtvP--GvIrykGAkiqMLDlPGIIdGAkdGrG rgkqv YHBZ_ECOLI : 192- 225: adypf TTLv--PslGvVrmdNEksfVVAdIPGLiEGaaEgA glgir YHBZ_HAEIN : 192- 225: adypf TTLv--PslGvVkvdDShsfVVAdIPGLiEGaaDgA glgir YKK3_CAEEL : 95- 128: agyef TTLtciP--GvIsynGAniqLLDlPGIIeGAsqGkG rgrqv YRB1_HALCU : 94- 127: gayef TTLnvnP--GmLeyrGAniqLLDvPGLIeGAagGrG ggkei J 10: 57.5054 16( 10) I-x(1,2)-G-A-x-[DEGQ]-G-x-G-x(0,1)-G-x-[EQR]-x-[ILV]-x(2)-[AIL]-[EKR]-x-[ACT]-[DNR]-[LV]-[ILV]-[FILV]-x-[ILMV]-[FILV]-[DGS] Occurences: 16(10) 128U_DROME : 121- 150: ldlpg IieGAkDGkGrGrQvIavARtCNLIFmVLD clkpl 128U_DROME : 122- 150: dlpgi Ie-GAkDGkGrGrQvIavARtCNLIFmVLD clkpl DRG_MOUSE : 121- 150: ldlpg IieGAkDGkGrGrQvIavARtCNLILiVLD vlkpl DRG_MOUSE : 122- 150: dlpgi Ie-GAkDGkGrGrQvIavARtCNLILiVLD vlkpl DRG_XENLA : 121- 150: ldlpg IieGAkDGkGrGrQvIavARtCNLILiVLD vlkpl DRG_XENLA : 122- 150: dlpgi Ie-GAkDGkGrGrQvIavARtCNLILiVLD vlkpl GTP1_SCHPO : 119- 147: ldlpg IieGAsQGrG-GrQaVsaARtADLILmVFG cykkl GTP1_SCHPO : 120- 147: dlpgi Ie-GAsQGrG-GrQaVsaARtADLILmVFG cykkl OBG_BACSU : 217- 245: dlpgl Ie-GAhQGvGlGhQfLrhIErTRVIVhVID msgle YAD6_YEAST : 122- 151: ldlpg IidGAkDGrGrGkQvIavARtCNLLFiILD vnkpl YAD6_YEAST : 123- 151: dlpgi Id-GAkDGrGrGkQvIavARtCNLLFiILD vnkpl YHBZ_ECOLI : 218- 246: dipgl Ie-GAaEGaGlGiRfLkhLErCRVLLhLID idpid YHBZ_HAEIN : 218- 246: dipgl Ie-GAaDGaGlGiRfLkhLErCRVLIhLVD iapid YKK3_CAEEL : 119- 148: ldlpg IieGAsQGkGrGrQvIsvAKtADLILmMLD agksd YKK3_CAEEL : 120- 148: dlpgi Ie-GAsQGkGrGrQvIsvAKtADLILmMLD agksd YRB1_HALCU : 119- 147: dvpgl Ie-GAaGGrGgGkEiLsvIRgADLVIfVLS afeie K 11: 53.8354 10( 10) G-A-x-[DEGQ]-G-x-G-x(0,1)-G-x-[EQR]-x-[ILV]-x(2)-[AIL]-[EKR]-x-[ACT]-[DNR]-[LV]-[ILV]-[FILV]-x-[ILMV]-[FILV]-[DGS] Occurences: 10(10) 128U_DROME : 124- 150: pgiie GAkDGkGrGrQvIavARtCNLIFmVLD clkpl DRG_MOUSE : 124- 150: pgiie GAkDGkGrGrQvIavARtCNLILiVLD vlkpl DRG_XENLA : 124- 150: pgiie GAkDGkGrGrQvIavARtCNLILiVLD vlkpl GTP1_SCHPO : 122- 147: pgiie GAsQGrG-GrQaVsaARtADLILmVFG cykkl OBG_BACSU : 219- 245: pglie GAhQGvGlGhQfLrhIErTRVIVhVID msgle YAD6_YEAST : 125- 151: pgiid GAkDGrGrGkQvIavARtCNLLFiILD vnkpl YHBZ_ECOLI : 220- 246: pglie GAaEGaGlGiRfLkhLErCRVLLhLID idpid YHBZ_HAEIN : 220- 246: pglie GAaDGaGlGiRfLkhLErCRVLIhLVD iapid YKK3_CAEEL : 122- 148: pgiie GAsQGkGrGrQvIsvAKtADLILmMLD agksd YRB1_HALCU : 121- 147: pglie GAaGGrGgGkEiLsvIRgADLVIfVLS afeie L 12: 39.9059 10( 10) D-[ILV]-P-G-x(0,1)-I-x(1,2)-G-A-x-[DEGQ]-G-x-G-x(4)-[FIV] Occurences: 10(10) 128U_DROME : 117- 135: kiqll DLPGiIe-GAkDGkGrgrqV iavar 128U_DROME : 117- 135: kiqll DLPG-IieGAkDGkGrgrqV iavar DRG_MOUSE : 117- 135: kiqll DLPGiIe-GAkDGkGrgrqV iavar DRG_MOUSE : 117- 135: kiqll DLPG-IieGAkDGkGrgrqV iavar DRG_XENLA : 117- 135: kiqll DLPGiIe-GAkDGkGrgrqV iavar DRG_XENLA : 117- 135: kiqll DLPG-IieGAkDGkGrgrqV iavar GTP1_SCHPO : 115- 133: eiqml DLPGiIe-GAsQGrGgrqaV saart GTP1_SCHPO : 115- 133: eiqml DLPG-IieGAsQGrGgrqaV saart OBG_BACSU : 212- 230: sfvma DLPGlIe-GAhQGvGlghqF lrhie YAD6_YEAST : 118- 136: kiqml DLPGiId-GAkDGrGrgkqV iavar YAD6_YEAST : 118- 136: kiqml DLPG-IidGAkDGrGrgkqV iavar YHBZ_ECOLI : 213- 231: sfvva DIPGlIe-GAaEGaGlgirF lkhle YHBZ_HAEIN : 213- 231: sfvva DIPGlIe-GAaDGaGlgirF lkhle YKK3_CAEEL : 115- 133: niqll DLPGiIe-GAsQGkGrgrqV isvak YKK3_CAEEL : 115- 133: niqll DLPG-IieGAsQGkGrgrqV isvak YRB1_HALCU : 114- 132: niqll DVPGlIe-GAaGGrGggkeI lsvir M 13: 35.2751 10( 10) A-x-[IL]-[PQ]-x-L-x(2,3)-G-[AIL]-x-[DEQ]-G-[AV]-x(2)-G Occurences: 10(10) 128U_DROME : 111- 128: ikykg AkIQlLdlpGIiEGAkdG kgrgr DRG_MOUSE : 111- 128: irykg AkIQlLdlpGIiEGAkdG kgrgr DRG_XENLA : 111- 128: vrykg AkIQlLdlpGIiEGAkdG kgrgr GTP1_SCHPO : 109- 126: leydg AeIQmLdlpGIiEGAsqG rggrq OBG_BACSU : 211- 227: rsfvm AdLPgLie-GAhQGVglG hqflr YAD6_YEAST : 112- 129: irykg AkIQmLdlpGIiDGAkdG rgrgk YHBZ_ECOLI : 212- 228: ksfvv AdIPgLie-GAaEGAglG irflk YHBZ_HAEIN : 212- 228: hsfvv AdIPgLie-GAaDGAglG irflk YKK3_CAEEL : 109- 126: isyng AnIQlLdlpGIiEGAsqG kgrgr YRB1_HALCU : 108- 125: leyrg AnIQlLdvpGLiEGAagG rgggk N 14: 33.0740 10( 10) P-G-x(0,1)-I-x(1,2)-G-A-x-[DEGQ]-G-x-G-x(4)-[FIV] Occurences: 10(10) 128U_DROME : 119- 135: qlldl PGiIe-GAkDGkGrgrqV iavar 128U_DROME : 119- 135: qlldl PG-IieGAkDGkGrgrqV iavar DRG_MOUSE : 119- 135: qlldl PGiIe-GAkDGkGrgrqV iavar DRG_MOUSE : 119- 135: qlldl PG-IieGAkDGkGrgrqV iavar DRG_XENLA : 119- 135: qlldl PGiIe-GAkDGkGrgrqV iavar DRG_XENLA : 119- 135: qlldl PG-IieGAkDGkGrgrqV iavar GTP1_SCHPO : 117- 133: qmldl PGiIe-GAsQGrGgrqaV saart GTP1_SCHPO : 117- 133: qmldl PG-IieGAsQGrGgrqaV saart OBG_BACSU : 214- 230: vmadl PGlIe-GAhQGvGlghqF lrhie YAD6_YEAST : 120- 136: qmldl PGiId-GAkDGrGrgkqV iavar YAD6_YEAST : 120- 136: qmldl PG-IidGAkDGrGrgkqV iavar YHBZ_ECOLI : 215- 231: vvadi PGlIe-GAaEGaGlgirF lkhle YHBZ_HAEIN : 215- 231: vvadi PGlIe-GAaDGaGlgirF lkhle YKK3_CAEEL : 117- 133: qlldl PGiIe-GAsQGkGrgrqV isvak YKK3_CAEEL : 117- 133: qlldl PG-IieGAsQGkGrgrqV isvak YRB1_HALCU : 116- 132: qlldv PGlIe-GAaGGrGggkeI lsvir O 15: 31.0242 10( 10) G-x(3,5)-V-x(0,1)-A-x(2)-G-x(4)-G-x-[STV]-x-[FL]-x-[NST]-x(4)-[AT] Occurences: 10(10) 128U_DROME : 53- 79: ggggt GeagfeV-AktGdarvGfVgFpSvgksT llsnl DRG_MOUSE : 54- 79: ggggp Gegfd-V-AktGdariGfVgFpSvgksT llsnl DRG_XENLA : 54- 79: ggggp Gegfd-V-AktGdariGfVgFpSvgksT llsnl GTP1_SCHPO : 61- 85: dvlks Gdar--V-AfiGfpsvGkStLlSaitkT ksata OBG_BACSU : 111- 136: dlteh Gqra--ViArgGrggrGnSrFaTpanpA pqlse YAD6_YEAST : 55- 80: sggga Gigfd-V-ArtGvasvGfVgFpSvgksT llskl YHBZ_ECOLI : 112- 137: dmtkh Gqrll-V-AkgGwhglGnTrFkSsvnrT prqkt YHBZ_HAEIN : 112- 137: dltqh Gqkml-V-AkgGyhglGnTrFkSsvnrA prqkt YKK3_CAEEL : 61- 85: dvmks Gdar--V-AmvGfpsvGkStLlSsmtsT hseaa YRB1_HALCU : 60- 84: aveqh Gdat--V-AlvGfpsvGkSsLiNamtnA dsevg P 16: 31.0242 13( 10) G-x(2,4)-V-x(0,1)-A-x(2)-G-x(4)-G-x-[STV]-x-[FL]-x-[NST]-x(4)-[AT] Occurences: 13(10) 128U_DROME : 56- 79: gtgea Gfe--V-AktGdarvGfVgFpSvgksT llsnl DRG_MOUSE : 54- 79: ggggp GegfdV-AktGdariGfVgFpSvgksT llsnl DRG_MOUSE : 56- 79: ggpge Gfd--V-AktGdariGfVgFpSvgksT llsnl DRG_XENLA : 54- 79: ggggp GegfdV-AktGdariGfVgFpSvgksT llsnl DRG_XENLA : 56- 79: ggpge Gfd--V-AktGdariGfVgFpSvgksT llsnl GTP1_SCHPO : 61- 85: dvlks Gdar-V-AfiGfpsvGkStLlSaitkT ksata OBG_BACSU : 111- 136: dlteh Gqra-ViArgGrggrGnSrFaTpanpA pqlse YAD6_YEAST : 55- 80: sggga GigfdV-ArtGvasvGfVgFpSvgksT llskl YAD6_YEAST : 57- 80: ggagi Gfd--V-ArtGvasvGfVgFpSvgksT llskl YHBZ_ECOLI : 112- 137: dmtkh GqrllV-AkgGwhglGnTrFkSsvnrT prqkt YHBZ_HAEIN : 112- 137: dltqh GqkmlV-AkgGyhglGnTrFkSsvnrA prqkt YKK3_CAEEL : 61- 85: dvmks Gdar-V-AmvGfpsvGkStLlSsmtsT hseaa YRB1_HALCU : 60- 84: aveqh Gdat-V-AlvGfpsvGkSsLiNamtnA dsevg Q 17: 28.9874 16( 10) L-x(1,3)-G-[AIL]-[AI]-[DE]-G-A-x(2)-G Occurences: 16(10) 128U_DROME : 116- 128: akiql LdlpGIIEGAkdG kgrgr 128U_DROME : 118- 128: iqlld Lp--GIIEGAkdG kgrgr DRG_MOUSE : 116- 128: akiql LdlpGIIEGAkdG kgrgr DRG_MOUSE : 118- 128: iqlld Lp--GIIEGAkdG kgrgr DRG_XENLA : 116- 128: akiql LdlpGIIEGAkdG kgrgr DRG_XENLA : 118- 128: iqlld Lp--GIIEGAkdG kgrgr GTP1_SCHPO : 114- 126: aeiqm LdlpGIIEGAsqG rggrq GTP1_SCHPO : 116- 126: iqmld Lp--GIIEGAsqG rggrq OBG_BACSU : 213- 223: fvmad Lp--GLIEGAhqG vglgh YAD6_YEAST : 117- 129: akiqm LdlpGIIDGAkdG rgrgk YAD6_YEAST : 119- 129: iqmld Lp--GIIDGAkdG rgrgk YHBZ_ECOLI : 217- 228: adipg Lie-GAAEGAglG irflk YHBZ_HAEIN : 217- 228: adipg Lie-GAADGAglG irflk YKK3_CAEEL : 114- 126: aniql LdlpGIIEGAsqG kgrgr YKK3_CAEEL : 116- 126: iqlld Lp--GIIEGAsqG kgrgr YRB1_HALCU : 113- 125: aniql LdvpGLIEGAagG rgggk R 18: 28.9040 10( 10) G-x(0,1)-I-x(1,2)-G-A-x-[DEGQ]-G-x-G-x(4)-[FIV] Occurences: 10(10) 128U_DROME : 120- 135: lldlp GiIe-GAkDGkGrgrqV iavar 128U_DROME : 120- 135: lldlp G-IieGAkDGkGrgrqV iavar DRG_MOUSE : 120- 135: lldlp GiIe-GAkDGkGrgrqV iavar DRG_MOUSE : 120- 135: lldlp G-IieGAkDGkGrgrqV iavar DRG_XENLA : 120- 135: lldlp GiIe-GAkDGkGrgrqV iavar DRG_XENLA : 120- 135: lldlp G-IieGAkDGkGrgrqV iavar GTP1_SCHPO : 118- 133: mldlp GiIe-GAsQGrGgrqaV saart GTP1_SCHPO : 118- 133: mldlp G-IieGAsQGrGgrqaV saart OBG_BACSU : 215- 230: madlp GlIe-GAhQGvGlghqF lrhie YAD6_YEAST : 121- 136: mldlp GiId-GAkDGrGrgkqV iavar YAD6_YEAST : 121- 136: mldlp G-IidGAkDGrGrgkqV iavar YHBZ_ECOLI : 216- 231: vadip GlIe-GAaEGaGlgirF lkhle YHBZ_HAEIN : 216- 231: vadip GlIe-GAaDGaGlgirF lkhle YKK3_CAEEL : 118- 133: lldlp GiIe-GAsQGkGrgrqV isvak YKK3_CAEEL : 118- 133: lldlp G-IieGAsQGkGrgrqV isvak YRB1_HALCU : 117- 132: lldvp GlIe-GAaGGrGggkeI lsvir S 19: 28.4040 10( 10) L-x(0,2)-I-x(1,2)-G-A-x-[DEGQ]-G-x-G-x(4)-[FIV] Occurences: 10(10) 128U_DROME : 118- 135: iqlld LpgIieGAkDGkGrgrqV iavar DRG_MOUSE : 118- 135: iqlld LpgIieGAkDGkGrgrqV iavar DRG_XENLA : 118- 135: iqlld LpgIieGAkDGkGrgrqV iavar GTP1_SCHPO : 116- 133: iqmld LpgIieGAsQGrGgrqaV saart OBG_BACSU : 216- 230: adlpg L--Ie-GAhQGvGlghqF lrhie YAD6_YEAST : 119- 136: iqmld LpgIidGAkDGrGrgkqV iavar YHBZ_ECOLI : 217- 231: adipg L--Ie-GAaEGaGlgirF lkhle YHBZ_HAEIN : 217- 231: adipg L--Ie-GAaDGaGlgirF lkhle YKK3_CAEEL : 116- 133: iqlld LpgIieGAsQGkGrgrqV isvak YRB1_HALCU : 118- 132: ldvpg L--Ie-GAaGGrGggkeI lsvir T 20: 22.5121 10( 10) D-[ILV]-P-G-x(0,1)-I-x(1,2)-G Occurences: 10(10) 128U_DROME : 117- 124: kiqll DLPGiIe-G akdgk 128U_DROME : 117- 124: kiqll DLPG-IieG akdgk DRG_MOUSE : 117- 124: kiqll DLPGiIe-G akdgk DRG_MOUSE : 117- 124: kiqll DLPG-IieG akdgk DRG_XENLA : 117- 124: kiqll DLPGiIe-G akdgk DRG_XENLA : 117- 124: kiqll DLPG-IieG akdgk GTP1_SCHPO : 115- 122: eiqml DLPGiIe-G asqgr GTP1_SCHPO : 115- 122: eiqml DLPG-IieG asqgr OBG_BACSU : 212- 219: sfvma DLPGlIe-G ahqgv YAD6_YEAST : 118- 125: kiqml DLPGiId-G akdgr YAD6_YEAST : 118- 125: kiqml DLPG-IidG akdgr YHBZ_ECOLI : 213- 220: sfvva DIPGlIe-G aaega YHBZ_HAEIN : 213- 220: sfvva DIPGlIe-G aadga YKK3_CAEEL : 115- 122: niqll DLPGiIe-G asqgk YKK3_CAEEL : 115- 122: niqll DLPG-IieG asqgk YRB1_HALCU : 114- 121: niqll DVPGlIe-G aaggr Number of patterns evaluated by Pratt:8528 Total running time: 7 seconds