------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 13 sequences from file GRPE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 13 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GRPE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: GRP1_CHLTR 190 GRP2_CHLTR 190 GRPE_BACSU 186 GRPE_BORBU 187 GRPE_CLOAB 200 GRPE_ECOLI 197 GRPE_HAEIN 234 GRPE_LACLA 179 GRPE_METMA 209 GRPE_MYCTU 235 GRPE_STAAU 208 GRPE_STRCO 225 GRPE_YEAST 228 Pratt run started at Thu Feb 6 19:43:06 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.0102 15( 13) D-x(3)-R-x(0,1)-A 2: 12.0102 18( 13) L-x(3,4)-A-x(3)-N 3: 11.5102 16( 13) R-x(3)-V-x(0,2)-V 4: 11.5102 21( 13) E-x(0,1)-S-x(0,1)-E 5: 11.5102 27( 13) E-x(0,2)-A-x(3)-E 6: 11.0102 36( 13) E-x(2,4)-S-x(0,1)-E 7: 11.0102 32( 13) E-x(0,2)-S-x(0,1)-E 8: 11.0102 53( 13) E-x(2,4)-E-x(0,1)-E 9: 11.0102 30( 13) E-x(3,4)-E-x(1,3)-S 10: 11.0102 23( 13) A-x(2,3)-E-x(0,2)-E 11: 11.0102 19( 13) E-x(0,1)-L-x(1,3)-L 12: 11.0102 24( 13) K-x(3,5)-E-x(2,3)-E 13: 11.0102 34( 13) E-x(0,1)-A-x(1,3)-E 14: 11.0102 19( 13) R-x(0,1)-R-x(3,5)-E 15: 11.0102 17( 13) R-x(0,2)-R-x(2,3)-E 16: 11.0102 16( 13) N-x(1,2)-R-x(0,2)-R 17: 11.0102 15( 13) R-x(2,3)-A-x(3,5)-N 18: 11.0102 29( 13) E-x(3,4)-K-x(1,3)-L 19: 11.0102 22( 13) A-x(1,2)-E-x(1,3)-E 20: 11.0102 26( 13) A-x(1,3)-E-x(1,2)-E Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 15.1808 17( 13) L-x(3,4)-A-[DE]-x(2)-N B 2: 15.0740 18( 13) E-x(0,2)-A-x-[AENQST]-x-E-[AEGQS] C 3: 14.6893 13( 13) R-x-[AS]-x-V-x(0,2)-V D 4: 14.2193 14( 13) D-[DNRS]-x(2)-R-x(0,1)-A E 5: 13.6042 17( 13) E-x(3,4)-K-x(1,3)-L-[EQR] F 6: 13.2661 23( 13) E-x(0,1)-A-x(1,3)-E-[AEGQ] G 7: 12.6282 16( 13) E-x(0,1)-L-x(1,3)-L-x-[DENQRS] H 8: 12.6258 32( 13) E-x(2,4)-E-x(0,1)-E-x-[ENPQST] I 9: 12.2486 23( 13) E-x(3,4)-E-x(1,3)-S-[ADEGNQST] J 10: 11.5102 21( 13) E-x(0,1)-S-x(0,1)-E K 11: 11.0102 36( 13) E-x(2,4)-S-x(0,1)-E L 12: 11.0102 32( 13) E-x(0,2)-S-x(0,1)-E M 13: 11.0102 23( 13) A-x(2,3)-E-x(0,2)-E N 14: 11.0102 24( 13) K-x(3,5)-E-x(2,3)-E O 15: 11.0102 19( 13) R-x(0,1)-R-x(3,5)-E P 16: 11.0102 17( 13) R-x(0,2)-R-x(2,3)-E Q 17: 11.0102 16( 13) N-x(1,2)-R-x(0,2)-R R 18: 11.0102 15( 13) R-x(2,3)-A-x(3,5)-N S 19: 11.0102 22( 13) A-x(1,2)-E-x(1,3)-E T 20: 11.0102 26( 13) A-x(1,3)-E-x(1,2)-E Best patterns with alignements: fitness hits(seqs) Pattern A 1: 15.1808 17( 13) L-x(3,4)-A-[DE]-x(2)-N Occurences: 17(13) GRP1_CHLTR : 45- 53: kndry Lmal-AEaeN srkrl GRP2_CHLTR : 45- 53: qndry Lmal-AEaeN srkrl GRPE_BACSU : 55- 64: ekenk LlrvqADfeN ykrrs GRPE_BACSU : 56- 64: kenkl Lrvq-ADfeN ykrrs GRPE_BORBU : 53- 61: lkdly Lrkq-AEfeN frkrl GRPE_CLOAB : 73- 82: aakdr LlrlsAEyeN yrnrt GRPE_CLOAB : 74- 82: akdrl Lrls-AEyeN yrnrt GRPE_ECOLI : 63- 71: erdgi Lrvk-AEmeN lrrrt GRPE_HAEIN : 101- 110: keqdi LlrsrAEieN lrrrt GRPE_HAEIN : 102- 110: eqdil Lrsr-AEieN lrrrt GRPE_LACLA : 53- 61: wenkf Lrvs-AEmqN vqrrg GRPE_METMA : 70- 79: ilkdq LfrlaADfdN frkrt GRPE_MYCTU : 62- 71: eltad LqrvqADfaN yrkra GRPE_STAAU : 78- 86: neeky Lrly-AEfeN ykrri GRPE_STRCO : 63- 72: ertad LqrlqAEyqN yrrrv GRPE_YEAST : 88- 97: elkdr LlrsvADfrN lqqvt GRPE_YEAST : 89- 97: lkdrl Lrsv-ADfrN lqqvt B 2: 15.0740 18( 13) E-x(0,2)-A-x-[AENQST]-x-E-[AEGQS] Occurences: 18(13) GRP1_CHLTR : 137- 143: npylh E--AvEiEE ttdip GRP2_CHLTR : 137- 143: npylh E--AvEiEE tttip GRPE_BACSU : 19- 27: eqeii EeqAaAdEQ qeetn GRPE_BACSU : 20- 27: qeiie Eq-AaAdEQ qeetn GRPE_BACSU : 96- 103: aldsf Er-AlQvEA dneqt GRPE_BORBU : 145- 151: dpsrh E--AiSiEE keglk GRPE_CLOAB : 114- 121: tldnl Er-AaStEG saedi GRPE_ECOLI : 24- 32: mdqhe EieAvEpEA saeqv GRPE_ECOLI : 26- 32: qheei E--AvEpEA saeqv GRPE_HAEIN : 91- 98: lktqi Ee-AaNkEQ dillr GRPE_HAEIN : 92- 98: ktqie E--AaNkEQ dillr GRPE_LACLA : 93- 100: sldnl Er-AlAvEG ltddv GRPE_METMA : 24- 30: eaers E--ArNsES paeka GRPE_MYCTU : 148- 154: dpvlh E--AvQhEG dggqg GRPE_STAAU : 118- 125: aidni Er-AlQiEG ddetf GRPE_STRCO : 24- 32: tpdda EpqAaSeEG aapag GRPE_STRCO : 211- 219: dssga EddAgTkES ggpde GRPE_YEAST : 47- 53: rfysd E--AkSeES kenne C 3: 14.6893 13( 13) R-x-[AS]-x-V-x(0,2)-V Occurences: 13(13) GRP1_CHLTR : 168- 174: gdrpi RvAkVk-V akfpt GRP2_CHLTR : 168- 174: gdrpi RvAkVk-V aklpa GRPE_BACSU : 178- 184: kdrvi RpSmVk-V nq GRPE_BORBU : 176- 182: ndril RtAkVk-V aqskn GRPE_CLOAB : 192- 198: gdkvl RhSmVk-V an GRPE_ECOLI : 186- 192: ngrti RaAmVt-V akaka GRPE_HAEIN : 226- 232: ngrvi RpAmVm-V aa GRPE_LACLA : 171- 176: herll RpAmV--V vaq GRPE_LACLA : 171- 177: herll RpAmVv-V aq GRPE_METMA : 194- 200: nekvv RpAlVs-V arspe GRPE_MYCTU : 180- 186: geqvl RhAlVg-V vdtvv GRPE_MYCTU : 180- 187: geqvl RhAlVgvV dtvvv GRPE_STAAU : 200- 206: kdrvl RpSmVk-V nq GRPE_STRCO : 179- 185: gerti RpArVa-V aepqp GRPE_YEAST : 216- 223: ndrvi RpAkVgiV kgeen D 4: 14.2193 14( 13) D-[DNRS]-x(2)-R-x(0,1)-A Occurences: 14(13) GRP1_CHLTR : 164- 170: gykig DRpiRvA kvkva GRP2_CHLTR : 164- 170: gykig DRpiRvA kvkva GRPE_BACSU : 93- 98: llpal DSfeR-A lqvea GRPE_BORBU : 90- 95: vvnfl DNleR-A inssk GRPE_BORBU : 172- 178: gycyn DRilRtA kvkva GRPE_CLOAB : 111- 116: mlptl DNleR-A asteg GRPE_CLOAB : 111- 117: mlptl DNleRaA stegs GRPE_ECOLI : 100- 105: llpvi DSldR-A levad GRPE_HAEIN : 139- 144: ilnti DNleR-A latpa GRPE_LACLA : 90- 95: ilssl DNleR-A laveg GRPE_METMA : 108- 113: fvevt DNfdR-A iksar GRPE_MYCTU : 100- 105: llgvl DDleR-A rkhgh GRPE_STAAU : 115- 120: ilpai DNieR-A lqieg GRPE_STRCO : 101- 106: llpvl DDvgR-A rehge GRPE_YEAST : 212- 218: gftln DRviRpA kvgiv E 5: 13.6042 17( 13) E-x(3,4)-K-x(1,3)-L-[EQR] Occurences: 17(13) GRP1_CHLTR : 52- 59: alaea Ensr-Kr--LQ kerte GRP2_CHLTR : 29- 38: qvlqq EnanlKae-LQ eqndr GRP2_CHLTR : 52- 59: alaea Ensr-Kr--LQ kerte GRPE_BACSU : 49- 57: lqgll EekenKl--LR vqadf GRPE_BACSU : 50- 57: qglle Eken-Kl--LR vqadf GRPE_BORBU : 44- 54: aelen EisnlKdlyLR kqaef GRPE_BORBU : 60- 67: kqaef Enfr-Kr--LE kekdn GRPE_CLOAB : 65- 75: eklkn EldaaKdrlLR lsaey GRPE_ECOLI : 81- 89: teldi Ekah-Kfa-LE kfine GRPE_HAEIN : 120- 128: teqdv Ekah-Kfa-LE kfskd GRPE_LACLA : 47- 54: qklat Ewen-Kf--LR vsaem GRPE_METMA : 89- 97: tarqm Eenr-Ksv-LE qvlld GRPE_MYCTU : 103- 112: vlddl Erar-KhghLE sgplk GRPE_STAAU : 72- 79: qqlad Enee-Ky--LR lyaef GRPE_STRCO : 124- 133: vaesl EttvaKlg-LQ qfgke GRPE_YEAST : 63- 71: edlte EqseiKk--LE sqlsa GRPE_YEAST : 80- 90: saktk EaselKdrlLR svadf F 6: 13.2661 23( 13) E-x(0,1)-A-x(1,3)-E-[AEGQ] Occurences: 23(13) GRP1_CHLTR : 137- 143: npylh E-AveiEE ttdip GRP2_CHLTR : 137- 143: npylh E-AveiEE tttip GRPE_BACSU : 20- 27: qeiie EqAaadEQ qeetn GRPE_BACSU : 96- 103: aldsf ErAlqvEA dneqt GRPE_BACSU : 102- 107: ralqv E-Adn-EQ tksll GRPE_BACSU : 124- 130: hrqlv E-AlkkEG veaie GRPE_BACSU : 132- 136: kkegv E-Ai--EA vgqef GRPE_BORBU : 145- 151: dpsrh E-AisiEE keglk GRPE_CLOAB : 114- 121: tldnl ErAastEG saedi GRPE_ECOLI : 26- 32: qheei E-AvepEA saeqv GRPE_ECOLI : 31- 36: eavep E-Asa-EQ vdprd GRPE_ECOLI : 48- 54: kvanl E-AqlaEA qtrer GRPE_HAEIN : 91- 98: lktqi EeAankEQ dillr GRPE_HAEIN : 92- 98: ktqie EaAnk-EQ dillr GRPE_HAEIN : 92- 98: ktqie E-AankEQ dillr GRPE_LACLA : 93- 100: sldnl ErAlavEG ltddv GRPE_METMA : 19- 25: ernqk E-AersEA rnses GRPE_METMA : 56- 62: aeknp EeAcr-EE neilk GRPE_METMA : 57- 62: eknpe E-Acr-EE neilk GRPE_MYCTU : 148- 154: dpvlh E-AvqhEG dggqg GRPE_STAAU : 42- 46: ghlqd E-Ai--EE tsden GRPE_STAAU : 118- 125: aidni ErAlqiEG ddetf GRPE_STRCO : 199- 204: tvkpa EdAa--EA qdssg GRPE_YEAST : 47- 52: rfysd E-Aks-EE skenn G 7: 12.6282 16( 13) E-x(0,1)-L-x(1,3)-L-x-[DENQRS] Occurences: 16(13) GRP1_CHLTR : 22- 28: pssdn E-Lqt-LqQ enanl GRP2_CHLTR : 22- 28: pspdn E-Lqv-LqQ enanl GRPE_BACSU : 43- 49: qnqin E-Lqg-LlE ekenk GRPE_BACSU : 43- 50: qnqin E-LqglLeE kenkl GRPE_BORBU : 27- 33: ksqkk EnLn--LvN sdkki GRPE_CLOAB : 51- 57: enlse EnLk--LkD enekl GRPE_CLOAB : 105- 112: sdvin EmLpt-LdN leraa GRPE_ECOLI : 124- 129: mvegi E-Lt--LkS mldvv GRPE_HAEIN : 164- 169: lfdgv E-Lt--LkE lvstv GRPE_LACLA : 114- 122: lemvq EsLisaLkE egvee GRPE_METMA : 64- 72: creen EiLkdqLfR laadf GRPE_MYCTU : 57- 64: edkva E-LtadLqR vqadf GRPE_STAAU : 65- 71: dqkin E-Lqq-LaD eneek GRPE_STAAU : 142- 150: vqmvh EsLinaLkD nglev GRPE_STRCO : 95- 102: anlls ElLpv-LdD vgrar GRPE_STRCO : 95- 102: anlls E-LlpvLdD vgrar GRPE_YEAST : 83- 90: tkeas E-LkdrLlR svadf GRPE_YEAST : 170- 177: rkhgi EkLdp-LgE pfdpn H 8: 12.6258 32( 13) E-x(2,4)-E-x(0,1)-E-x-[ENPQST] Occurences: 32(13) GRP1_CHLTR : 137- 145: npylh EaveiE-EtT dipeg GRP1_CHLTR : 137- 144: npylh Eav--EiEeT tdipe GRP1_CHLTR : 149- 157: ttdip EgtilE-EfT kgyki GRP2_CHLTR : 137- 145: npylh EaveiE-EtT tipeg GRP2_CHLTR : 137- 144: npylh Eav--EiEeT ttipe GRP2_CHLTR : 149- 157: tttip EgtilE-EfT kgyki GRPE_BACSU : 8- 16: ekqtv EqnetE-EqE iieeq GRPE_BACSU : 8- 15: ekqtv Eqn--EtEeQ eiiee GRPE_BACSU : 26- 32: qaaad Eqq--E-EtN esell GRPE_BORBU : 5- 13: mekk Etks-EsEkT nkqdn GRPE_BORBU : 145- 153: dpsrh EaisiE-EkE glknp GRPE_CLOAB : 21- 28: tiasq Eei--EvEgN seess GRPE_CLOAB : 26- 33: eeiev Egns-E-EsS keees GRPE_CLOAB : 30- 38: vegns EesskE-EeS nnsei GRPE_CLOAB : 30- 39: vegns EesskEeEsN nseis GRPE_CLOAB : 31- 38: egnse Essk-E-EeS nnsei GRPE_CLOAB : 31- 39: egnse EsskeE-EsN nseis GRPE_CLOAB : 31- 39: egnse Essk-EeEsN nseis GRPE_ECOLI : 24- 33: mdqhe EieavEpEaS aeqvd GRPE_ECOLI : 26- 33: qheei Eav--EpEaS aeqvd GRPE_HAEIN : 45- 52: qeqkv Eip--EvEkQ eevvv GRPE_HAEIN : 53- 61: evekq EevvvE-EtQ qaehs GRPE_HAEIN : 54- 61: vekqe Evvv-E-EtQ qaehs GRPE_LACLA : 12- 19: eeikn Ekvd-E-EvT eelte GRPE_LACLA : 16- 23: nekvd Eevt-E-ElT eeale GRPE_LACLA : 17- 23: ekvde Evt--E-ElT eeale GRPE_LACLA : 28- 36: teeal EdiveE-EiN eldea GRPE_LACLA : 28- 36: teeal Ediv-EeEiN eldea GRPE_LACLA : 122- 129: isalk Eegv-E-EvS yesfd GRPE_LACLA : 123- 129: salke Egv--E-EvS yesfd GRPE_METMA : 14- 23: nmdsk ErnqkEaErS earns GRPE_METMA : 45- 54: vspen EpsspEaEkN peeac GRPE_METMA : 56- 64: aeknp EeacrE-EnE ilkdq GRPE_METMA : 57- 64: eknpe Eacr-E-EnE ilkdq GRPE_MYCTU : 226- 233: adtsg Eqa--EsEpS gs GRPE_STAAU : 13- 20: veknt Estv-E-EtN ikqni GRPE_STAAU : 42- 48: ghlqd Eai--E-EtS denvi GRPE_STRCO : 4- 12: mte EtpgfE-EkP dvpsg GRPE_YEAST : 58- 65: skenn Edlt-E-EqS eikkl I 9: 12.2486 23( 13) E-x(3,4)-E-x(1,3)-S-[ADEGNQST] Occurences: 23(13) GRP1_CHLTR : 11- 19: ntsse EiqtsEp--SS dnelq GRP1_CHLTR : 11- 20: ntsse EiqtsEps-SD nelqt GRP2_CHLTR : 118- 126: kqife EkgvvEy--SS kgelf GRPE_BACSU : 26- 35: qaaad Eqqe-EtneSE llqnq GRPE_BORBU : 40- 47: dkkia Elen-Ei--SN lkdly GRPE_CLOAB : 21- 30: tiasq EeievEgn-SE esske GRPE_CLOAB : 22- 30: iasqe Eiev-Egn-SE esske GRPE_CLOAB : 26- 33: eeiev Egns-Ee--SS keees GRPE_CLOAB : 30- 39: vegns EesskEee-SN nseis GRPE_CLOAB : 31- 39: egnse EsskeEe--SN nseis GRPE_CLOAB : 31- 39: egnse Essk-Eee-SN nseis GRPE_CLOAB : 37- 45: sskee EsnnsEi--SD enlse GRPE_CLOAB : 42- 50: esnns Eisd-Enl-SE enlkl GRPE_ECOLI : 24- 34: mdqhe EieavEpeaSA eqvdp GRPE_ECOLI : 26- 34: qheei EavepEa--SA eqvdp GRPE_HAEIN : 59- 67: evvve EtqqaEh--SQ efdpl GRPE_HAEIN : 164- 173: lfdgv EltlkElv-ST vgrfg GRPE_LACLA : 110- 119: vkkgl Emvq-EsliSA lkeeg GRPE_METMA : 14- 24: nmdsk ErnqkEaerSE arnse GRPE_METMA : 19- 29: ernqk EaersEarnSE spaek GRPE_MYCTU : 226- 234: adtsg EqaesEp--SG s GRPE_STAAU : 42- 49: ghlqd Eaie-Et--SD envie GRPE_STRCO : 199- 208: tvkpa Edaa-EaqdSS gaedd GRPE_YEAST : 58- 66: skenn EdlteEq--SE ikkle GRPE_YEAST : 58- 66: skenn Edlt-Eeq-SE ikkle GRPE_YEAST : 66- 76: teeqs EikklEsqlSA ktkea J 10: 11.5102 21( 13) E-x(0,1)-S-x(0,1)-E Occurences: 21(13) GRP1_CHLTR : 82- 85: flppm E-SmE kalgf GRP2_CHLTR : 82- 85: flpsi E-SmE kalgf GRPE_BACSU : 33- 35: qeetn E-S-E llqnq GRPE_BORBU : 9- 11: ketks E-S-E ktnkq GRPE_CLOAB : 31- 35: egnse EsSkE eesnn GRPE_CLOAB : 42- 46: esnns EiSdE nlsee GRPE_CLOAB : 120- 124: raast EgSaE dikkg GRPE_ECOLI : 31- 35: eavep EaSaE qvdpr GRPE_HAEIN : 64- 68: etqqa EhSqE fdple GRPE_LACLA : 127- 131: eegve EvSyE sfdhn GRPE_METMA : 21- 24: nqkea ErS-E arnse GRPE_METMA : 169- 172: aihhi EtS-E vpdnt GRPE_MYCTU : 229- 231: sgeqa E-S-E psgs GRPE_STAAU : 6- 9: mtnkd E-SvE kntes GRPE_STAAU : 46- 50: deaie EtSdE nviee GRPE_STAAU : 180- 183: dnpdf E-SgE itqel GRPE_STRCO : 121- 124: fksva E-SlE ttvak GRPE_YEAST : 51- 55: deaks EeSkE nnedl GRPE_YEAST : 52- 55: eakse E-SkE nnedl GRPE_YEAST : 63- 66: edlte EqS-E ikkle GRPE_YEAST : 80- 83: saktk EaS-E lkdrl K 11: 11.0102 36( 13) E-x(2,4)-S-x(0,1)-E Occurences: 36(13) GRP1_CHLTR : 3- 10: mt EtpntSsE eiqts GRP1_CHLTR : 10- 16: pntss EeiqtS-E pssdn GRP1_CHLTR : 11- 16: ntsse Eiqt-S-E pssdn GRP2_CHLTR : 3- 10: mt EtpntSsE eiqts GRP2_CHLTR : 10- 16: pntss EeiqtS-E pspdn GRP2_CHLTR : 11- 16: ntsse Eiqt-S-E pspdn GRPE_BACSU : 29- 35: adeqq EetneS-E llqnq GRPE_BACSU : 30- 35: deqqe Etne-S-E llqnq GRPE_BORBU : 5- 9: mekk Etk--S-E sektn GRPE_BORBU : 5- 11: mekk EtkseS-E ktnkq GRPE_BORBU : 145- 150: dpsrh Eai--SiE ekegl GRPE_CLOAB : 14- 21: vtmed EetiaSqE eieve GRPE_CLOAB : 15- 21: tmede Etia-SqE eieve GRPE_CLOAB : 24- 30: sqeei EvegnS-E esske GRPE_CLOAB : 24- 31: sqeei EvegnSeE sskee GRPE_CLOAB : 26- 30: eeiev Egn--S-E esske GRPE_CLOAB : 26- 31: eeiev Egn--SeE sskee GRPE_CLOAB : 30- 35: vegns Ees--SkE eesnn GRPE_CLOAB : 36- 42: esske EesnnS-E isden GRPE_CLOAB : 37- 42: sskee Esnn-S-E isden GRPE_CLOAB : 46- 50: seisd Enl--S-E enlkl GRPE_CLOAB : 46- 51: seisd Enl--SeE nlklk GRPE_CLOAB : 114- 120: tldnl Eraa-StE gsaed GRPE_CLOAB : 147- 152: sklgi Eeip-S-E gkfdp GRPE_CLOAB : 148- 152: klgie Eip--S-E gkfdp GRPE_ECOLI : 29- 35: eieav Epea-SaE qvdpr GRPE_HAEIN : 34- 39: qfcft Ekkm-S-E qeqkv GRPE_LACLA : 126- 131: keegv Eev--SyE sfdhn GRPE_METMA : 8- 14: ksrkk Enmd-SkE rnqke GRPE_METMA : 19- 24: ernqk Eaer-S-E arnse GRPE_METMA : 24- 29: eaers Earn-S-E spaek GRPE_METMA : 37- 43: aekag Etkv-SpE nepss GRPE_METMA : 43- 50: tkvsp EnepsSpE aeknp GRPE_METMA : 45- 50: vspen Eps--SpE aeknp GRPE_MYCTU : 226- 231: adtsg Eqae-S-E psgs GRPE_STAAU : 45- 50: qdeai Eet--SdE nviee GRPE_STRCO : 24- 30: tpdda EpqaaS-E egaap GRPE_STRCO : 24- 31: tpdda EpqaaSeE gaapa GRPE_YEAST : 47- 51: rfysd Eak--S-E esken GRPE_YEAST : 47- 52: rfysd Eak--SeE skenn GRPE_YEAST : 62- 66: nedlt Eeq--S-E ikkle GRPE_YEAST : 138- 145: nafke EdlqkSkE isdly L 12: 11.0102 32( 13) E-x(0,2)-S-x(0,1)-E Occurences: 32(13) GRP1_CHLTR : 82- 85: flppm E--SmE kalgf GRP2_CHLTR : 82- 85: flpsi E--SmE kalgf GRPE_BACSU : 33- 35: qeetn E--S-E llqnq GRPE_BORBU : 5- 9: mekk EtkS-E sektn GRPE_BORBU : 9- 11: ketks E--S-E ktnkq GRPE_BORBU : 145- 150: dpsrh EaiSiE ekegl GRPE_CLOAB : 26- 30: eeiev EgnS-E esske GRPE_CLOAB : 26- 31: eeiev EgnSeE sskee GRPE_CLOAB : 30- 35: vegns EesSkE eesnn GRPE_CLOAB : 31- 35: egnse Es-SkE eesnn GRPE_CLOAB : 42- 46: esnns Ei-SdE nlsee GRPE_CLOAB : 46- 50: seisd EnlS-E enlkl GRPE_CLOAB : 46- 51: seisd EnlSeE nlklk GRPE_CLOAB : 120- 124: raast Eg-SaE dikkg GRPE_CLOAB : 148- 152: klgie EipS-E gkfdp GRPE_ECOLI : 31- 35: eavep Ea-SaE qvdpr GRPE_HAEIN : 64- 68: etqqa Eh-SqE fdple GRPE_LACLA : 126- 131: keegv EevSyE sfdhn GRPE_LACLA : 127- 131: eegve Ev-SyE sfdhn GRPE_METMA : 21- 24: nqkea Er-S-E arnse GRPE_METMA : 45- 50: vspen EpsSpE aeknp GRPE_METMA : 169- 172: aihhi Et-S-E vpdnt GRPE_MYCTU : 229- 231: sgeqa E--S-E psgs GRPE_STAAU : 6- 9: mtnkd E--SvE kntes GRPE_STAAU : 45- 50: qdeai EetSdE nviee GRPE_STAAU : 46- 50: deaie Et-SdE nviee GRPE_STAAU : 180- 183: dnpdf E--SgE itqel GRPE_STRCO : 121- 124: fksva E--SlE ttvak GRPE_YEAST : 47- 51: rfysd EakS-E esken GRPE_YEAST : 47- 52: rfysd EakSeE skenn GRPE_YEAST : 51- 55: deaks Ee-SkE nnedl GRPE_YEAST : 52- 55: eakse E--SkE nnedl GRPE_YEAST : 62- 66: nedlt EeqS-E ikkle GRPE_YEAST : 63- 66: edlte Eq-S-E ikkle GRPE_YEAST : 80- 83: saktk Ea-S-E lkdrl M 13: 11.0102 23( 13) A-x(2,3)-E-x(0,2)-E Occurences: 23(13) GRP1_CHLTR : 47- 52: drylm Ala-Ea-E nsrkr GRP1_CHLTR : 138- 143: pylhe AveiE--E ttdip GRP2_CHLTR : 47- 52: drylm Ala-Ea-E nsrkr GRP2_CHLTR : 138- 143: pylhe AveiE--E tttip GRPE_BACSU : 22- 29: iieeq AaadEqqE etnes GRPE_BACSU : 23- 29: ieeqa Aad-EqqE etnes GRPE_BACSU : 125- 132: rqlve AlkkEgvE aieav GRPE_BORBU : 39- 44: sdkki Ael-En-E isnlk GRPE_BORBU : 146- 151: psrhe AisiE--E keglk GRPE_BORBU : 146- 153: psrhe AisiEekE glknp GRPE_CLOAB : 18- 22: deeti Asq-E--E ieveg GRPE_CLOAB : 18- 24: deeti AsqeEi-E vegns GRPE_CLOAB : 18- 24: deeti Asq-EeiE vegns GRPE_ECOLI : 118- 124: npdms Amv-EgiE ltlks GRPE_HAEIN : 77- 83: leeai ArvqEl-E eqlkt GRPE_HAEIN : 77- 84: leeai ArvqEleE qlktq GRPE_HAEIN : 149- 154: alatp Ank-Ed-E svkal GRPE_LACLA : 119- 123: eslis Alk-E--E gveev GRPE_LACLA : 119- 126: eslis AlkeEgvE evsye GRPE_METMA : 58- 62: knpee Acr-E--E neilk GRPE_METMA : 58- 64: knpee AcreEn-E ilkdq GRPE_METMA : 58- 64: knpee Acr-EenE ilkdq GRPE_METMA : 85- 90: frkrt ArqmE--E nrksv GRPE_METMA : 201- 206: alvsv ArspE--E aek GRPE_METMA : 201- 208: alvsv ArspEeaE k GRPE_MYCTU : 134- 140: glglv AfgaEg-E dfdpv GRPE_STAAU : 70- 75: elqql AdenE--E kylrl GRPE_STRCO : 27- 31: daepq Aas-E--E gaapa GRPE_YEAST : 48- 52: fysde Aks-E--E skenn GRPE_YEAST : 48- 55: fysde AkseEskE nnedl GRPE_YEAST : 76- 83: esqls AktkEasE lkdrl GRPE_YEAST : 134- 138: ghaln Afk-E--E dlqks N 14: 11.0102 24( 13) K-x(3,5)-E-x(2,3)-E Occurences: 24(13) GRP1_CHLTR : 56- 64: aensr Krlqk-Ert-E mmqya GRP2_CHLTR : 56- 64: aensr Krlqk-Ert-E mmqya GRPE_BACSU : 4- 11: see Kqtv--Eqn-E teeqe GRPE_BACSU : 127- 135: lveal Kkegv-Eai-E avgqe GRPE_BACSU : 128- 135: vealk Kegv--Eai-E avgqe GRPE_BORBU : 36- 44: lvnsd Kkia--ElenE isnlk GRPE_BORBU : 130- 137: kkynl Kkfg--Eng-E nfdps GRPE_CLOAB : 7- 15: qekds Kdvtm-Ede-E tiasq GRPE_CLOAB : 143- 152: knsls Klgie-EipsE gkfdp GRPE_ECOLI : 136- 144: ldvvr Kfgv--EviaE tnvpl GRPE_HAEIN : 35- 45: fcfte KkmseqEqkvE ipeve GRPE_HAEIN : 36- 45: cftek Kmseq-EqkvE ipeve GRPE_LACLA : 6- 16: mseet KeeiknEkvdE evtee GRPE_LACLA : 10- 20: tkeei KnekvdEevtE eltee GRPE_LACLA : 13- 20: eikne Kvde--Evt-E eltee GRPE_LACLA : 13- 21: eikne Kvde--EvteE lteea GRPE_LACLA : 106- 114: ltddv Kkgl--EmvqE slisa GRPE_LACLA : 121- 131: lisal KeegveEvsyE sfdhn GRPE_METMA : 53- 61: speae Knpe--EacrE eneil GRPE_MYCTU : 21- 30: vtvtd KrridpEtg-E vrhvp GRPE_STAAU : 4- 13: mtn Kdesv-EkntE stvee GRPE_STAAU : 36- 45: qaees KghlqdEai-E etsde GRPE_STAAU : 36- 46: qaees KghlqdEaieE tsden GRPE_STRCO : 117- 124: lvggf Ksva--Esl-E ttvak GRPE_YEAST : 49- 58: ysdea KseeskEnn-E dltee GRPE_YEAST : 54- 62: ksees Kenn--EdltE eqsei O 15: 11.0102 19( 13) R-x(0,1)-R-x(3,5)-E Occurences: 19(13) GRP1_CHLTR : 55- 61: eaens RkRlqk--E rtemm GRP2_CHLTR : 55- 61: eaens RkRlqk--E rtemm GRPE_BACSU : 67- 72: fenyk R-Rsrl--E measq GRPE_BACSU : 67- 74: fenyk R-RsrlemE asqky GRPE_BACSU : 68- 74: enykr RsRlem--E asqky GRPE_BORBU : 63- 69: efenf RkRlek--E kdnfv GRPE_CLOAB : 84- 90: eyeny RnRtak--E kegiy GRPE_CLOAB : 84- 92: eyeny RnRtakekE giytd GRPE_ECOLI : 73- 81: emenl RrRteldiE kahkf GRPE_ECOLI : 74- 81: menlr R-RteldiE kahkf GRPE_HAEIN : 103- 109: qdill RsRaei--E nlrrr GRPE_HAEIN : 112- 120: eienl RrRteqdvE kahkf GRPE_HAEIN : 113- 120: ienlr R-RteqdvE kahkf GRPE_LACLA : 64- 69: mqnvq R-Rgne--E rlqlv GRPE_METMA : 81- 89: dfdnf RkRtarqmE enrks GRPE_MYCTU : 22- 27: tvtdk R-Ridp--E tgevr GRPE_MYCTU : 104- 112: lddle RaRkhghlE sgplk GRPE_STAAU : 89- 94: fenyk R-Riqk--E neink GRPE_STAAU : 89- 96: fenyk R-RiqkenE inkty GRPE_STRCO : 79- 86: rrrve RdRvavk-E vavan GRPE_STRCO : 105- 111: lddvg RaRehg--E lvggf GRPE_YEAST : 40- 47: vgsmr RmRfysd-E aksee P 16: 11.0102 17( 13) R-x(0,2)-R-x(2,3)-E Occurences: 17(13) GRP1_CHLTR : 55- 61: eaens Rk-RlqkE rtemm GRP2_CHLTR : 55- 61: eaens Rk-RlqkE rtemm GRPE_BACSU : 67- 72: fenyk R--RsrlE measq GRPE_BACSU : 67- 74: fenyk RrsRlemE asqky GRPE_BACSU : 68- 74: enykr Rs-RlemE asqky GRPE_BORBU : 63- 69: efenf Rk-RlekE kdnfv GRPE_CLOAB : 72- 79: daakd RllRlsaE yenyr GRPE_CLOAB : 84- 90: eyeny Rn-RtakE kegiy GRPE_ECOLI : 73- 77: emenl R--Rrt-E ldiek GRPE_HAEIN : 103- 109: qdill Rs-RaeiE nlrrr GRPE_HAEIN : 112- 116: eienl R--Rrt-E qdvek GRPE_LACLA : 64- 68: mqnvq R--Rgn-E erlql GRPE_LACLA : 64- 69: mqnvq R--RgneE rlqlv GRPE_METMA : 83- 89: dnfrk RtaRqm-E enrks GRPE_METMA : 83- 90: dnfrk RtaRqmeE nrksv GRPE_MYCTU : 22- 27: tvtdk R--RidpE tgevr GRPE_STAAU : 89- 94: fenyk R--RiqkE neink GRPE_STRCO : 74- 78: eyqny R--Rrv-E rdrva GRPE_STRCO : 105- 111: lddvg Ra-RehgE lvggf GRPE_YEAST : 154- 161: lytgv RmtRdvfE ntlrk Q 17: 11.0102 16( 13) N-x(1,2)-R-x(0,2)-R Occurences: 16(13) GRP1_CHLTR : 53- 57: laeae Ns-Rk-R lqker GRP2_CHLTR : 53- 57: laeae Ns-Rk-R lqker GRPE_BACSU : 64- 68: qadfe NykR--R srlem GRPE_BACSU : 64- 70: qadfe NykRrsR lemea GRPE_BORBU : 61- 65: qaefe Nf-Rk-R lekek GRPE_BORBU : 171- 176: kgycy Nd-RilR takvk GRPE_CLOAB : 82- 86: saeye Ny-Rn-R takek GRPE_ECOLI : 71- 74: kaeme Nl-R--R rteld GRPE_ECOLI : 71- 75: kaeme NlrR--R teldi GRPE_ECOLI : 71- 75: kaeme Nl-Rr-R teldi GRPE_ECOLI : 181- 186: kgytl Ng-RtiR aamvt GRPE_HAEIN : 110- 113: raeie Nl-R--R rteqd GRPE_HAEIN : 110- 114: raeie NlrR--R teqdv GRPE_HAEIN : 110- 114: raeie Nl-Rr-R teqdv GRPE_HAEIN : 221- 226: kgytl Ng-RviR pamvm GRPE_LACLA : 61- 65: saemq NvqR--R gneer GRPE_METMA : 79- 83: aadfd Nf-Rk-R tarqm GRPE_MYCTU : 71- 75: qadfa Ny-Rk-R alrdq GRPE_STAAU : 86- 90: yaefe NykR--R iqken GRPE_STRCO : 72- 75: qaeyq Ny-R--R rverd GRPE_STRCO : 72- 76: qaeyq NyrR--R verdr GRPE_STRCO : 72- 76: qaeyq Ny-Rr-R verdr GRPE_YEAST : 211- 216: lgftl Nd-RviR pakvg R 18: 11.0102 15( 13) R-x(2,3)-A-x(3,5)-N Occurences: 15(13) GRP1_CHLTR : 43- 53: keknd RylmAlaeaeN srkrl GRP2_CHLTR : 43- 53: qeqnd RylmAlaeaeN srkrl GRPE_BACSU : 57- 64: enkll Rvq-Adfe--N ykrrs GRPE_BORBU : 54- 61: kdlyl Rkq-Aefe--N frkrl GRPE_CLOAB : 75- 82: kdrll Rls-Aeye--N yrnrt GRPE_ECOLI : 64- 71: rdgil Rvk-Aeme--N lrrrt GRPE_HAEIN : 103- 110: qdill Rsr-Aeie--N lrrrt GRPE_HAEIN : 143- 150: idnle Ral-Atpa--N kedes GRPE_LACLA : 54- 61: enkfl Rvs-Aemq--N vqrrg GRPE_METMA : 72- 79: kdqlf Rla-Adfd--N frkrt GRPE_METMA : 81- 91: dfdnf RkrtArqmeeN rksvl GRPE_MYCTU : 64- 71: tadlq Rvq-Adfa--N yrkra GRPE_STAAU : 79- 86: eekyl Rly-Aefe--N ykrri GRPE_STRCO : 65- 72: tadlq Rlq-Aeyq--N yrrrv GRPE_YEAST : 90- 97: kdrll Rsv-Adfr--N lqqvt S 19: 11.0102 22( 13) A-x(1,2)-E-x(1,3)-E Occurences: 22(13) GRP1_CHLTR : 47- 52: drylm AlaEa--E nsrkr GRP1_CHLTR : 138- 142: pylhe Av-Ei--E ettdi GRP1_CHLTR : 138- 143: pylhe Av-Eie-E ttdip GRP2_CHLTR : 47- 52: drylm AlaEa--E nsrkr GRP2_CHLTR : 138- 142: pylhe Av-Ei--E ettti GRP2_CHLTR : 138- 143: pylhe Av-Eie-E tttip GRPE_BACSU : 23- 29: ieeqa AadEqq-E etnes GRPE_BACSU : 23- 30: ieeqa AadEqqeE tnese GRPE_BACSU : 24- 29: eeqaa Ad-Eqq-E etnes GRPE_BACSU : 24- 30: eeqaa Ad-EqqeE tnese GRPE_BORBU : 39- 44: sdkki AelEn--E isnlk GRPE_CLOAB : 18- 24: deeti AsqEei-E vegns GRPE_CLOAB : 88- 92: yrnrt Ak-Ek--E giytd GRPE_CLOAB : 117- 124: nlera AstEgsaE dikkg GRPE_ECOLI : 27- 31: heeie Av-Ep--E asaeq GRPE_ECOLI : 118- 124: npdms AmvEgi-E ltlks GRPE_HAEIN : 149- 154: alatp AnkEd--E svkal GRPE_LACLA : 26- 32: eltee Al-EdivE eeine GRPE_LACLA : 45- 49: eaqkl At-Ew--E nkflr GRPE_LACLA : 119- 126: eslis AlkEegvE evsye GRPE_METMA : 58- 64: knpee AcrEen-E ilkdq GRPE_MYCTU : 194- 198: tvvvd Aa-El--E svddg GRPE_STAAU : 43- 50: hlqde AieEtsdE nviee GRPE_STAAU : 70- 74: elqql Ad-En--E ekylr GRPE_STAAU : 70- 75: elqql Ad-Ene-E kylrl GRPE_STRCO : 106- 111: ddvgr Ar-Ehg-E lvggf GRPE_YEAST : 48- 55: fysde AksEeskE nnedl T 20: 11.0102 26( 13) A-x(1,3)-E-x(1,2)-E Occurences: 26(13) GRP1_CHLTR : 47- 52: drylm Ala-Ea-E nsrkr GRP1_CHLTR : 138- 142: pylhe Av--Ei-E ettdi GRP1_CHLTR : 138- 143: pylhe Av--EieE ttdip GRP2_CHLTR : 47- 52: drylm Ala-Ea-E nsrkr GRP2_CHLTR : 138- 142: pylhe Av--Ei-E ettti GRP2_CHLTR : 138- 143: pylhe Av--EieE tttip GRPE_BACSU : 22- 29: iieeq AaadEqqE etnes GRPE_BACSU : 23- 29: ieeqa Aad-EqqE etnes GRPE_BACSU : 24- 29: eeqaa Ad--EqqE etnes GRPE_BACSU : 125- 132: rqlve AlkkEgvE aieav GRPE_BORBU : 39- 44: sdkki Ael-En-E isnlk GRPE_BORBU : 146- 153: psrhe AisiEekE glknp GRPE_CLOAB : 18- 24: deeti AsqeEi-E vegns GRPE_CLOAB : 18- 24: deeti Asq-EeiE vegns GRPE_CLOAB : 88- 92: yrnrt Ak--Ek-E giytd GRPE_ECOLI : 27- 31: heeie Av--Ep-E asaeq GRPE_ECOLI : 118- 124: npdms Amv-EgiE ltlks GRPE_HAEIN : 77- 83: leeai ArvqEl-E eqlkt GRPE_HAEIN : 77- 84: leeai ArvqEleE qlktq GRPE_HAEIN : 149- 154: alatp Ank-Ed-E svkal GRPE_LACLA : 45- 49: eaqkl At--Ew-E nkflr GRPE_LACLA : 119- 126: eslis AlkeEgvE evsye GRPE_METMA : 58- 64: knpee AcreEn-E ilkdq GRPE_METMA : 58- 64: knpee Acr-EenE ilkdq GRPE_METMA : 201- 208: alvsv ArspEeaE k GRPE_MYCTU : 134- 140: glglv AfgaEg-E dfdpv GRPE_MYCTU : 194- 198: tvvvd Aa--El-E svddg GRPE_STAAU : 70- 74: elqql Ad--En-E ekylr GRPE_STAAU : 70- 75: elqql Ad--EneE kylrl GRPE_STRCO : 106- 111: ddvgr Ar--EhgE lvggf GRPE_YEAST : 48- 55: fysde AkseEskE nnedl GRPE_YEAST : 76- 83: esqls AktkEasE lkdrl Number of patterns evaluated by Pratt:1150 Total running time: 1 seconds