------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 6 sequences from file GREAB_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 6 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GREAB_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: GREA_ECOLI 158 GREA_HAEIN 158 GREA_MYCLE 202 GREA_RICPR 162 GREB_ECOLI 158 GREB_HAEIN 158 Pratt run started at Thu Feb 6 19:43:05 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 27.6904 6( 6) I-x(4)-E-x(3,5)-K-x(3,4)-S-x(2)-S-P-x(4)-L 2: 27.1904 6( 6) G-D-x(2)-E-N-x(2)-Y-x(3,5)-R-x(0,2)-E 3: 23.0203 6( 6) D-x(2)-E-N-x(2)-Y-x(3,5)-R-x(0,2)-E 4: 20.3503 6( 6) L-x(2)-E-L-x(2)-L-x(3,4)-R 5: 19.3503 6( 6) K-x(3,4)-S-x(2)-S-P-x(1,3)-A 6: 18.8503 6( 6) S-x(2)-S-P-x(1,3)-A-x(0,2)-L 7: 18.8503 6( 6) E-N-x(2)-Y-x(3,5)-R-x(0,2)-E 8: 16.1802 6( 6) E-L-x(2)-L-x(3,4)-R 9: 15.6802 8( 6) E-x(0,1)-L-x(2)-L-x(3,4)-R 10: 15.6802 6( 6) L-x(1,2)-E-x(0,1)-L-x(2)-L 11: 15.1802 8( 6) R-x(2)-G-x(0,1)-D-x(0,2)-E 12: 14.6802 6( 6) S-P-x(1,3)-A-x(0,2)-L 13: 14.6802 6( 6) V-G-x(0,2)-E-x(2,4)-K 14: 14.6802 7( 6) I-x(0,2)-V-G-x(0,2)-E 15: 14.6802 7( 6) T-x(2,4)-I-x(4)-E-x(3,5)-K 16: 14.6802 6( 6) T-x(3,5)-V-x(0,2)-G-x(2)-E 17: 14.6802 6( 6) N-x(2)-Y-x(3,5)-R-x(0,2)-E 18: 12.5102 8( 6) D-x(2)-E-x(3)-Y 19: 12.5102 6( 6) A-x(4)-D-x(2)-E 20: 12.0102 10( 6) D-x(1,2)-V-x(3)-T Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 69.0951 6( 6) L-[DEKR]-x-E-L-x(2)-L-x(3,4)-R-x(2)-[IV]-x(3)-[IV]-[ANST]-x(3)-[AES]-x-G-D-x(2)-E-N-[AG]-[DEG]-Y-x(2)-[AGN]-[KR]-[EKR] B 2: 62.7017 6( 6) E-L-x(2)-L-x(3,4)-R-x(2)-[IV]-x(3)-[IV]-[ANST]-x(3)-[AES]-x-G-D-x(2)-E-N-[AG]-[DEG]-Y-x(2)-[AGN]-[KR]-[EKR] C 3: 62.2017 8( 6) E-x(0,1)-L-x(2)-L-x(3,4)-R-x(2)-[IV]-x(3)-[IV]-[ANST]-x(3)-[AES]-x-G-D-x(2)-E-N-[AG]-[DEG]-Y-x(2)-[AGN]-[KR]-[EKR] D 4: 57.8015 6( 6) I-[AV]-[GT]-x(2)-E-x(3,5)-K-x(3,4)-S-[IPV]-[ADN]-S-P-[ILMV]-[AG]-x-[AG]-L-[IL]-x(4)-[DG]-[DE] E 5: 50.8542 6( 6) K-x(3,4)-S-[IPV]-[ADN]-S-P-x(1,3)-A-x-[AGI]-x-[AIL]-x(2)-[EGST]-x-[DGT]-[DR]-x(3)-[IV]-x-[NT]-[GP]-x-[GT] F 6: 47.6774 6( 6) L-x(1,2)-E-x(0,1)-L-x(2)-L-x(3)-[ER]-x(3)-[AIV]-x(4)-[ADST]-x(3)-[AES]-x-[DG]-x(3)-[EN]-[GN]-[AG]-x-[HY]-x(3)-[EKR]-[EKR] G 7: 39.3651 6( 6) G-D-x(2)-E-N-[AG]-[DEG]-Y-x(3,5)-R-x(0,2)-E-x-[DQ]-x(3)-[ER] H 8: 38.6840 7( 6) T-x(2,4)-I-[AV]-[GT]-x(2)-E-x(3,5)-K-x(2)-[ILV]-x(3)-[NS]-[PS]-x-[AIL]-x(2)-[AGL]-[IL] I 9: 38.6070 6( 6) R-x(2)-G-x(0,1)-D-x(0,2)-E-x(4)-[EHK]-[ADN]-x(2)-[ES]-x-[DQ]-[AGS]-x(2)-[AE]-x(2)-[IL]-x(3)-[EQT] J 10: 35.1950 6( 6) D-x(2)-E-N-[AG]-[DEG]-Y-x(3,5)-R-x(0,2)-E-x-[DQ]-x(3)-[ER] K 11: 33.8403 6( 6) S-[IPV]-[ADN]-S-P-x(1,3)-A-x(0,2)-L-[IL]-x(4)-[DG]-[DE] L 12: 31.0578 6( 6) D-x(2)-E-N-[AG]-[DEG]-Y-x(2)-[AGN]-[KR]-[EKR] M 13: 31.0250 6( 6) E-N-[AG]-[DEG]-Y-x(3,5)-R-x(0,2)-E-x-[DQ]-x(3)-[ER] N 14: 30.5851 6( 6) A-x-[AES]-x-[GN]-D-x(2)-E-[EN]-[AG]-[DE]-x(3)-[AGN] O 15: 27.4271 6( 6) V-G-x(0,2)-E-x(2,4)-K-x(2)-[GILV]-x(3)-[NPS]-[GPS]-x-[AIV]-x(2)-[GLV] P 16: 26.8549 6( 6) N-[AG]-[DEG]-Y-x(3,5)-R-x(0,2)-E-x-[DQ]-x(3)-[ER] Q 17: 24.3771 6( 6) S-P-x(1,3)-A-x(0,2)-L-[IL]-x(4)-[DG]-[DE] R 18: 21.5664 6( 6) I-[AV]-[GT]-x(2)-E-x(3,5)-K-x(3,4)-S S 19: 14.6802 7( 6) I-x(0,2)-V-G-x(0,2)-E T 20: 14.6802 6( 6) T-x(3,5)-V-x(0,2)-G-x(2)-E Best patterns with alignements: fitness hits(seqs) Pattern A 1: 69.0951 6( 6) L-[DEKR]-x-E-L-x(2)-L-x(3,4)-R-x(2)-[IV]-x(3)-[IV]-[ANST]-x(3)-[AES]-x-G-D-x(2)-E-N-[AG]-[DEG]-Y-x(2)-[AGN]-[KR]-[EKR] Occurences: 6(6) GREA_ECOLI : 14- 53: rgaek LReELdfLksvrRpeIiaaIAearEhGDlkENAEYhaARE qqgfc GREA_HAEIN : 14- 53: rgaeq LReELdfLknvrRpeIikaIAearEhGDlkENAEYhaARE qqgfc GREA_MYCLE : 55- 93: eshdr LKaELdqLian-RpvIaaeINdrrEeGDlrENGGYhaARE eqgqq GREA_RICPR : 15- 54: kgfkk LEhELkhLkhveRkkIsedIAearEhGDlsENAEYeaARE kqafi GREB_ECOLI : 14- 53: egyek LKqELnyLwreeRpeVtkkVTwaaSlGDrsENADYqyNKK rlrei GREB_HAEIN : 15- 54: qgwla LDqELkfLwkeeRpkVtqaVSdaaAlGDrsENAEYiyGKR rlrei B 2: 62.7017 6( 6) E-L-x(2)-L-x(3,4)-R-x(2)-[IV]-x(3)-[IV]-[ANST]-x(3)-[AES]-x-G-D-x(2)-E-N-[AG]-[DEG]-Y-x(2)-[AGN]-[KR]-[EKR] Occurences: 6(6) GREA_ECOLI : 17- 53: eklre ELdfLksvrRpeIiaaIAearEhGDlkENAEYhaARE qqgfc GREA_HAEIN : 17- 53: eqlre ELdfLknvrRpeIikaIAearEhGDlkENAEYhaARE qqgfc GREA_MYCLE : 58- 93: drlka ELdqLian-RpvIaaeINdrrEeGDlrENGGYhaARE eqgqq GREA_RICPR : 18- 54: kkleh ELkhLkhveRkkIsedIAearEhGDlsENAEYeaARE kqafi GREB_ECOLI : 17- 53: eklkq ELnyLwreeRpeVtkkVTwaaSlGDrsENADYqyNKK rlrei GREB_HAEIN : 18- 54: laldq ELkfLwkeeRpkVtqaVSdaaAlGDrsENAEYiyGKR rlrei C 3: 62.2017 8( 6) E-x(0,1)-L-x(2)-L-x(3,4)-R-x(2)-[IV]-x(3)-[IV]-[ANST]-x(3)-[AES]-x-G-D-x(2)-E-N-[AG]-[DEG]-Y-x(2)-[AGN]-[KR]-[EKR] Occurences: 8(6) GREA_ECOLI : 16- 53: aeklr EeLdfLksvrRpeIiaaIAearEhGDlkENAEYhaARE qqgfc GREA_ECOLI : 17- 53: eklre E-LdfLksvrRpeIiaaIAearEhGDlkENAEYhaARE qqgfc GREA_HAEIN : 16- 53: aeqlr EeLdfLknvrRpeIikaIAearEhGDlkENAEYhaARE qqgfc GREA_HAEIN : 17- 53: eqlre E-LdfLknvrRpeIikaIAearEhGDlkENAEYhaARE qqgfc GREA_MYCLE : 58- 93: drlka E-LdqLian-RpvIaaeINdrrEeGDlrENGGYhaARE eqgqq GREA_RICPR : 18- 54: kkleh E-LkhLkhveRkkIsedIAearEhGDlsENAEYeaARE kqafi GREB_ECOLI : 17- 53: eklkq E-LnyLwreeRpeVtkkVTwaaSlGDrsENADYqyNKK rlrei GREB_HAEIN : 18- 54: laldq E-LkfLwkeeRpkVtqaVSdaaAlGDrsENAEYiyGKR rlrei D 4: 57.8015 6( 6) I-[AV]-[GT]-x(2)-E-x(3,5)-K-x(3,4)-S-[IPV]-[ADN]-S-P-[ILMV]-[AG]-x-[AG]-L-[IL]-x(4)-[DG]-[DE] Occurences: 6(6) GREA_ECOLI : 107- 137: eqtyr IVGddEadf--KqnliSVNSPIArGLIgkeeDD vvvik GREA_HAEIN : 107- 137: evtyr IVGddEadi--KsgliSVNSPIArGLIgkelDD tvnit GREA_MYCLE : 146- 178: tetfl IATrqEgvnegKlevySPNSPLGgALIdakvGE trsyt GREA_RICPR : 107- 137: evtyi IVGeyEadit-Kkrv-SIASPIAkALIgksvGD fvevt GREB_ECOLI : 105- 135: thrfr IVGydEifgr-Kdyi-SIDSPMArALLkkevGD lavvn GREB_HAEIN : 106- 136: tkqyr IVGcdEfapa-Knwi-SIDSPVArALIgktlDD evrve E 5: 50.8542 6( 6) K-x(3,4)-S-[IPV]-[ADN]-S-P-x(1,3)-A-x-[AGI]-x-[AIL]-x(2)-[EGST]-x-[DGT]-[DR]-x(3)-[IV]-x-[NT]-[GP]-x-[GT] Occurences: 6(6) GREA_ECOLI : 116- 146: deadf KqnliSVNSPi--ArGlIgkEeDDvvvIkTPgG evefe GREA_HAEIN : 116- 146: deadi KsgliSVNSPi--ArGlIgkElDDtvnItTPgG vvefd GREA_MYCLE : 157- 189: gvneg KlevySPNSPlggAlIdAkvGeTRsytVpNGnT vqvtl GREA_RICPR : 117- 146: eadit Kkrv-SIASPi--AkAlIgkSvGDfveVtTPkG lksye GREB_ECOLI : 115- 144: eifgr Kdyi-SIDSPm--ArAlLkkEvGDlavVnTPaG easwy GREB_HAEIN : 116- 145: efapa Knwi-SIDSPv--ArAlIgkTlDDevrVeTPsG fitly F 6: 47.6774 6( 6) L-x(1,2)-E-x(0,1)-L-x(2)-L-x(3)-[ER]-x(3)-[AIV]-x(4)-[ADST]-x(3)-[AES]-x-[DG]-x(3)-[EN]-[GN]-[AG]-x-[HY]-x(3)-[EKR]-[EKR] Occurences: 6(6) GREA_ECOLI : 14- 53: rgaek LreE-LdfLksvRrpeIiaaiAearEhGdlkENAeYhaaRE qqgfc GREA_ECOLI : 14- 53: rgaek Lr-EeLdfLksvRrpeIiaaiAearEhGdlkENAeYhaaRE qqgfc GREA_HAEIN : 14- 53: rgaeq LreE-LdfLknvRrpeIikaiAearEhGdlkENAeYhaaRE qqgfc GREA_HAEIN : 14- 53: rgaeq Lr-EeLdfLknvRrpeIikaiAearEhGdlkENAeYhaaRE qqgfc GREA_MYCLE : 55- 94: eshdr LkaE-LdqLianRpviAaeinDrreEgDlreNGGyHaarEE qgqqe GREA_RICPR : 15- 54: kgfkk LehE-LkhLkhvErkkIsediAearEhGdlsENAeYeaaRE kqafi GREB_ECOLI : 14- 53: egyek LkqE-LnyLwreErpeVtkkvTwaaSlGdrsENAdYqynKK rlrei GREB_HAEIN : 15- 54: qgwla LdqE-LkfLwkeErpkVtqavSdaaAlGdrsENAeYiygKR rlrei G 7: 39.3651 6( 6) G-D-x(2)-E-N-[AG]-[DEG]-Y-x(3,5)-R-x(0,2)-E-x-[DQ]-x(3)-[ER] Occurences: 6(6) GREA_ECOLI : 40- 59: eareh GDlkENAEYhaa--R--EqQgfcE grikd GREA_HAEIN : 40- 59: eareh GDlkENAEYhaa--R--EqQgfcE griqe GREA_MYCLE : 80- 99: drree GDlrENGGYhaa--R--EeQgqqE arirq GREA_RICPR : 41- 60: eareh GDlsENAEYeaa--R--EkQafiE grike GREB_ECOLI : 40- 63: waasl GDrsENADYqynkkRlrEiDrrvR yltkc GREB_HAEIN : 41- 64: daaal GDrsENAEYiygkrRlrEiDrrvR fltkr H 8: 38.6840 7( 6) T-x(2,4)-I-[AV]-[GT]-x(2)-E-x(3,5)-K-x(2)-[ILV]-x(3)-[NS]-[PS]-x-[AIL]-x(2)-[AGL]-[IL] Occurences: 7(6) GREA_ECOLI : 104- 130: sdeeq Tyr--IVGddEadf--KqnLisvNSpIarGL igkee GREA_HAEIN : 104- 130: tdeev Tyr--IVGddEadi--KsgLisvNSpIarGL igkel GREA_MYCLE : 141- 171: ddksd TetflIATrqEgvnegKleVyspNSpLggAL idakv GREA_MYCLE : 143- 171: ksdte Tfl--IATrqEgvnegKleVyspNSpLggAL idakv GREA_RICPR : 104- 131: teeev Tyi--IVGeyEadit-KkrVsiaSPiAkaLI gksvg GREB_ECOLI : 100- 129: nddgv ThrfrIVGydEifgr-KdyIsidSPmAraLL kkevg GREB_HAEIN : 101- 130: neege TkqyrIVGcdEfapa-KnwIsidSPvAraLI gktld I 9: 38.6070 6( 6) R-x(2)-G-x(0,1)-D-x(0,2)-E-x(4)-[EHK]-[ADN]-x(2)-[ES]-x-[DQ]-[AGS]-x(2)-[AE]-x(2)-[IL]-x(3)-[EQT] Occurences: 6(6) GREA_ECOLI : 37- 66: aiaea RehG-DlkEnaeyHAarEqQGfcEgrIkdiE aklsn GREA_HAEIN : 37- 66: aiaea RehG-DlkEnaeyHAarEqQGfcEgrIqeiE gklgn GREA_MYCLE : 77- 106: eindr ReeG-DlrEnggyHAarEeQGqqEarIrqlQ dllni GREA_RICPR : 38- 67: diaea RehG-DlsEnaeyEAarEkQAfiEgrIkelE dmtar GREB_ECOLI : 104- 132: vthrf RivGyD--EifgrKDyiSiDSpmAraLlkkE vgdla GREB_HAEIN : 105- 133: etkqy RivGcD--EfapaKNwiSiDSpvAraLigkT lddev J 10: 35.1950 6( 6) D-x(2)-E-N-[AG]-[DEG]-Y-x(3,5)-R-x(0,2)-E-x-[DQ]-x(3)-[ER] Occurences: 6(6) GREA_ECOLI : 41- 59: arehg DlkENAEYhaa--R--EqQgfcE grikd GREA_HAEIN : 41- 59: arehg DlkENAEYhaa--R--EqQgfcE griqe GREA_MYCLE : 81- 99: rreeg DlrENGGYhaa--R--EeQgqqE arirq GREA_RICPR : 42- 60: arehg DlsENAEYeaa--R--EkQafiE grike GREB_ECOLI : 41- 63: aaslg DrsENADYqynkkRlrEiDrrvR yltkc GREB_HAEIN : 42- 64: aaalg DrsENAEYiygkrRlrEiDrrvR fltkr K 11: 33.8403 6( 6) S-[IPV]-[ADN]-S-P-x(1,3)-A-x(0,2)-L-[IL]-x(4)-[DG]-[DE] Occurences: 6(6) GREA_ECOLI : 121- 137: kqnli SVNSPi--ArgLIgkeeDD vvvik GREA_HAEIN : 121- 137: ksgli SVNSPi--ArgLIgkelDD tvnit GREA_MYCLE : 162- 178: klevy SPNSPlggA--LIdakvGE trsyt GREA_RICPR : 121- 137: tkkrv SIASPiakA--LIgksvGD fvevt GREA_RICPR : 121- 137: tkkrv SIASPi--AkaLIgksvGD fvevt GREB_ECOLI : 119- 135: rkdyi SIDSPmarA--LLkkevGD lavvn GREB_ECOLI : 119- 135: rkdyi SIDSPm--AraLLkkevGD lavvn GREB_HAEIN : 120- 136: aknwi SIDSPvarA--LIgktlDD evrve GREB_HAEIN : 120- 136: aknwi SIDSPv--AraLIgktlDD evrve L 12: 31.0578 6( 6) D-x(2)-E-N-[AG]-[DEG]-Y-x(2)-[AGN]-[KR]-[EKR] Occurences: 6(6) GREA_ECOLI : 41- 53: arehg DlkENAEYhaARE qqgfc GREA_HAEIN : 41- 53: arehg DlkENAEYhaARE qqgfc GREA_MYCLE : 81- 93: rreeg DlrENGGYhaARE eqgqq GREA_RICPR : 42- 54: arehg DlsENAEYeaARE kqafi GREB_ECOLI : 41- 53: aaslg DrsENADYqyNKK rlrei GREB_HAEIN : 42- 54: aaalg DrsENAEYiyGKR rlrei M 13: 31.0250 6( 6) E-N-[AG]-[DEG]-Y-x(3,5)-R-x(0,2)-E-x-[DQ]-x(3)-[ER] Occurences: 6(6) GREA_ECOLI : 44- 59: hgdlk ENAEYhaa--R--EqQgfcE grikd GREA_HAEIN : 44- 59: hgdlk ENAEYhaa--R--EqQgfcE griqe GREA_MYCLE : 84- 99: egdlr ENGGYhaa--R--EeQgqqE arirq GREA_RICPR : 45- 60: hgdls ENAEYeaa--R--EkQafiE grike GREB_ECOLI : 44- 63: lgdrs ENADYqynkkRlrEiDrrvR yltkc GREB_HAEIN : 45- 64: lgdrs ENAEYiygkrRlrEiDrrvR fltkr N 14: 30.5851 6( 6) A-x-[AES]-x-[GN]-D-x(2)-E-[EN]-[AG]-[DE]-x(3)-[AGN] Occurences: 6(6) GREA_ECOLI : 36- 51: aaiae ArEhGDlkENAEyhaA reqqg GREA_HAEIN : 36- 51: kaiae ArEhGDlkENAEyhaA reqqg GREA_MYCLE : 70- 85: nrpvi AaEiNDrrEEGDlreN ggyha GREA_RICPR : 37- 52: ediae ArEhGDlsENAEyeaA rekqa GREB_ECOLI : 36- 51: kkvtw AaSlGDrsENADyqyN kkrlr GREB_HAEIN : 37- 52: qavsd AaAlGDrsENAEyiyG krrlr O 15: 27.4271 6( 6) V-G-x(0,2)-E-x(2,4)-K-x(2)-[GILV]-x(3)-[NPS]-[GPS]-x-[AIV]-x(2)-[GLV] Occurences: 6(6) GREA_ECOLI : 108- 129: qtyri VGddEadf-KqnLisvNSpIarG ligke GREA_HAEIN : 108- 129: vtyri VGddEadi-KsgLisvNSpIarG ligke GREA_MYCLE : 114- 132: lniak VG--Eap--KqsGvalPGsVvkV yyndd GREA_RICPR : 108- 130: vtyii VGeyEaditKkrVsiaSPiAkaL igksv GREB_ECOLI : 106- 128: hrfri VGydEifgrKdyIsidSPmAraL lkkev GREB_HAEIN : 107- 129: kqyri VGcdEfapaKnwIsidSPvAraL igktl P 16: 26.8549 6( 6) N-[AG]-[DEG]-Y-x(3,5)-R-x(0,2)-E-x-[DQ]-x(3)-[ER] Occurences: 6(6) GREA_ECOLI : 45- 59: gdlke NAEYhaa--R--EqQgfcE grikd GREA_HAEIN : 45- 59: gdlke NAEYhaa--R--EqQgfcE griqe GREA_MYCLE : 85- 99: gdlre NGGYhaa--R--EeQgqqE arirq GREA_RICPR : 46- 60: gdlse NAEYeaa--R--EkQafiE grike GREB_ECOLI : 45- 63: gdrse NADYqynkkRlrEiDrrvR yltkc GREB_HAEIN : 46- 64: gdrse NAEYiygkrRlrEiDrrvR fltkr Q 17: 24.3771 6( 6) S-P-x(1,3)-A-x(0,2)-L-[IL]-x(4)-[DG]-[DE] Occurences: 6(6) GREA_ECOLI : 124- 137: lisvn SPi--ArgLIgkeeDD vvvik GREA_HAEIN : 124- 137: lisvn SPi--ArgLIgkelDD tvnit GREA_MYCLE : 165- 178: vyspn SPlggA--LIdakvGE trsyt GREA_RICPR : 124- 137: rvsia SPiakA--LIgksvGD fvevt GREA_RICPR : 124- 137: rvsia SPi--AkaLIgksvGD fvevt GREB_ECOLI : 122- 135: yisid SPmarA--LLkkevGD lavvn GREB_ECOLI : 122- 135: yisid SPm--AraLLkkevGD lavvn GREB_HAEIN : 123- 136: wisid SPvarA--LIgktlDD evrve GREB_HAEIN : 123- 136: wisid SPv--AraLIgktlDD evrve R 18: 21.5664 6( 6) I-[AV]-[GT]-x(2)-E-x(3,5)-K-x(3,4)-S Occurences: 6(6) GREA_ECOLI : 107- 121: eqtyr IVGddEadf--KqnliS vnspi GREA_HAEIN : 107- 121: evtyr IVGddEadi--KsgliS vnspi GREA_MYCLE : 146- 162: tetfl IATrqEgvnegKlevyS pnspl GREA_RICPR : 107- 121: evtyi IVGeyEadit-Kkrv-S iaspi GREB_ECOLI : 105- 119: thrfr IVGydEifgr-Kdyi-S idspm GREB_HAEIN : 106- 120: tkqyr IVGcdEfapa-Knwi-S idspv S 19: 14.6802 7( 6) I-x(0,2)-V-G-x(0,2)-E Occurences: 7(6) GREA_ECOLI : 107- 112: eqtyr I--VGddE adfkq GREA_HAEIN : 107- 112: evtyr I--VGddE adiks GREA_MYCLE : 111- 116: qdlln IakVG--E apkqs GREA_RICPR : 106- 110: eevty Ii-VG--E yeadi GREA_RICPR : 106- 112: eevty Ii-VGeyE aditk GREA_RICPR : 107- 110: evtyi I--VG--E yeadi GREA_RICPR : 107- 112: evtyi I--VGeyE aditk GREB_ECOLI : 105- 110: thrfr I--VGydE ifgrk GREB_HAEIN : 106- 111: tkqyr I--VGcdE fapak T 20: 14.6802 6( 6) T-x(3,5)-V-x(0,2)-G-x(2)-E Occurences: 6(6) GREA_ECOLI : 104- 112: sdeeq Tyri--V--GddE adfkq GREA_HAEIN : 104- 112: tdeev Tyri--V--GddE adiks GREA_MYCLE : 148- 159: tflia Trqeg-VneGklE vyspn GREA_RICPR : 104- 112: teeev Tyii--V--GeyE aditk GREB_ECOLI : 100- 110: nddgv ThrfriV--GydE ifgrk GREB_HAEIN : 101- 111: neege TkqyriV--GcdE fapak Number of patterns evaluated by Pratt:1773 Total running time: 1 seconds