------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file GRANULINS PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GRANULINS.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: GRN_CAVPO 591 GRN_HUMAN 593 GRN_MOUSE 589 GRN_RAT 588 PMD1_LOCMI 54 Pratt run started at Thu Feb 6 19:43:01 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 87.0711 5( 5) C-x(1,2)-E-x(2)-C-P-x(3)-T-C-C-x(4)-G-x(2)-G-C-C-P-x(4)-V-C-C-x-D-x(2)-H-C-C-P-x(4)-C 2: 78.2310 5( 5) P-x(0,1)-G-x(1,2)-T-C-C-x(4)-G-x(2)-G-C-C-P-x(4)-V-C-C-x-D-x(2)-H-C-C-P-x(4)-C 3: 78.2310 5( 5) C-x(1,2)-G-x(1,2)-T-C-C-x(4)-G-x(2)-G-C-C-P-x(4)-V-C-C-x-D-x(2)-H-C-C-P-x(4)-C 4: 74.5609 5( 5) G-x(1,2)-T-C-C-x(4)-G-x(2)-G-C-C-P-x(4)-V-C-C-x-D-x(2)-H-C-C-P-x(4)-C 5: 66.7208 5( 5) G-x-C-P-x(5)-C-C-x-D-x(2)-H-C-C-P-x-G-x(2)-C-D-x(2)-H-x-R-C 6: 65.7208 12( 5) C-x(4,5)-G-x(2)-G-C-C-P-x(4)-V-C-C-x-D-x(2)-H-C-C-P-x(4)-C-x(1,2)-E 7: 65.2208 5( 5) P-x(1,3)-G-x(3,4)-C-C-x(5)-V-C-C-x-D-x(2)-H-C-C-P-x-G-x(2)-C-x(4)-R-x-C 8: 61.5508 6( 5) G-x(3)-C-C-P-x(4)-V-C-C-x-D-x(2)-H-C-C-P-x-G-x(2)-C-x(0,2)-E 9: 58.3807 5( 5) C-C-P-x(3)-G-V-C-C-x-D-x(2)-H-C-C-P-x-G-x(2)-C 10: 57.8807 6( 5) G-C-C-P-x(4)-V-C-C-x-D-x(2)-H-C-C-P-x(4)-C-x(1,2)-E 11: 57.3807 5( 5) P-x(5)-C-C-x-D-x(2)-H-C-C-P-x-G-x(2)-C-D-x(2)-H-x(0,1)-R-x(0,1)-C 12: 54.2107 5( 5) C-C-x-D-x(2)-H-C-C-P-x-G-x(2)-C-D-x(2)-H-x-R-C 13: 54.2107 5( 5) C-P-x(3)-G-V-C-C-x-D-x(2)-H-C-C-P-x-G-x(2)-C 14: 53.7107 5( 5) C-C-x(0,1)-D-x(2)-H-C-C-P-x-G-x(2)-C-D-x(2)-H-x-R-C 15: 50.0406 5( 5) P-x(3)-G-V-C-C-x-D-x(2)-H-C-C-P-x-G-x(2)-C 16: 49.5406 6( 5) C-x(1,2)-D-G-x-H-C-C-P-x-G-x(2)-C-x(2)-D-x(3)-C-x-Q 17: 45.8706 5( 5) G-V-C-C-x-D-x(2)-H-C-C-P-x-G-x(2)-C 18: 45.3706 6( 5) D-x(0,1)-G-x-H-C-C-P-x-G-x(2)-C-x(2)-D-x(3)-C-x-Q 19: 44.3706 6( 5) V-C-C-x-D-x(2)-H-C-C-P-x-G-x(0,1)-T-x(0,2)-V 20: 40.7005 5( 5) C-x-D-G-x-H-C-C-P-x-G-x(2)-C-x(0,2)-D Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 119.3040 5( 5) C-x(1,2)-E-x(2)-C-P-[DEG]-[GT]-x-T-C-C-x(2)-[NPQ]-[QST]-G-x(2)-G-C-C-P-[FY]-x(2)-[AG]-V-C-C-x-D-x-[IV]-H-C-C-P-[AES]-x(3)-C-[DH]-[ET]-[DEQ] B 2: 108.7830 5( 5) P-x(0,1)-G-x(1,2)-T-C-C-x(2)-[NPQ]-[QST]-G-x(2)-G-C-C-P-[FY]-x(2)-[AG]-V-C-C-x-D-x-[IV]-H-C-C-P-[AES]-x(3)-C-[DH]-[ET]-[DEQ]-x(3)-C C 3: 108.7830 5( 5) C-x(1,2)-G-x(1,2)-T-C-C-x(2)-[NPQ]-[QST]-G-x(2)-G-C-C-P-[FY]-x(2)-[AG]-V-C-C-x-D-x-[IV]-H-C-C-P-[AES]-x(3)-C-[DH]-[ET]-[DEQ]-x(3)-C D 4: 105.1130 5( 5) G-x(1,2)-T-C-C-x(2)-[NPQ]-[QST]-G-x(2)-G-C-C-P-[FY]-x(2)-[AG]-V-C-C-x-D-x-[IV]-H-C-C-P-[AES]-x(3)-C-[DH]-[ET]-[DEQ]-x(3)-C E 5: 91.7064 5( 5) G-x-C-P-x(2)-[EQ]-[AG]-[SV]-C-C-x-D-x-[IV]-H-C-C-P-x-G-[AT]-x-C-D-x-[DV]-H-x-R-C-[IV]-[QST] F 6: 88.5245 5( 5) G-x-C-P-x(3)-[AG]-[SV]-C-C-x-D-x-[IV]-H-C-C-P-x-G-[AT]-x-C-D-x-[DV]-H-x-R-C-[IV]-[QST] G 7: 87.5176 5( 5) P-x(1,3)-G-x(3,4)-C-C-[PQ]-x(2)-[EH]-[AG]-V-C-C-x-D-x(2)-H-C-C-P-[AS]-G-x-[TV]-C-[DN]-x-[DK]-x-R-x-C H 8: 85.3544 5( 5) G-x-C-P-x(4)-[SV]-C-C-x-D-x-[IV]-H-C-C-P-x-G-[AT]-x-C-D-x-[DV]-H-x-R-C-[IV]-[QST] I 9: 82.3663 5( 5) P-x(2)-[EQ]-[AG]-[SV]-C-C-x-D-x-[IV]-H-C-C-P-x-G-[AT]-x-C-D-x-[DV]-H-x(0,1)-R-x(0,1)-C-[IV]-[QST] J 10: 82.1833 5( 5) G-x-C-P-x(5)-C-C-x-D-x-[IV]-H-C-C-P-x-G-[AT]-x-C-D-x-[DV]-H-x-R-C-[IV]-[QST] K 11: 76.4843 5( 5) C-C-P-[FY]-x(2)-G-V-C-C-x-D-x(2)-H-C-C-P-x-G-x(2)-C-[ADES]-[AES]-x(3)-[KR]-C-[ILV] L 12: 74.3405 12( 5) C-x(4,5)-G-x(2)-G-C-C-P-x(2)-[EK]-[AG]-V-C-C-x-D-x(2)-H-C-C-P-[AEQS]-x(3)-C-x(1,2)-E M 13: 72.7827 6( 5) G-[ADEG]-x-[AG]-C-C-P-x(3)-[AG]-V-C-C-x-D-x(2)-H-C-C-P-[AQS]-G-x(2)-C-x(0,2)-E N 14: 72.3143 5( 5) C-P-[FY]-x(2)-G-V-C-C-x-D-x(2)-H-C-C-P-x-G-x(2)-C-[ADES]-[AES]-x(3)-[KR]-C-[ILV] O 15: 69.6732 5( 5) C-C-x-D-x-[IV]-H-C-C-P-x-G-[AT]-x-C-D-x-[DV]-H-x-R-C-[IV]-[QST] P 16: 69.1732 5( 5) C-C-x(0,1)-D-x-[IV]-H-C-C-P-x-G-[AT]-x-C-D-x-[DV]-H-x-R-C-[IV]-[QST] Q 17: 68.1442 5( 5) P-[FY]-x(2)-G-V-C-C-x-D-x(2)-H-C-C-P-x-G-x(2)-C-[ADES]-[AES]-x(3)-[KR]-C-[ILV] R 18: 66.5004 6( 5) G-C-C-P-x(2)-[EK]-[AG]-V-C-C-x-D-x(2)-H-C-C-P-[AEQS]-x(3)-C-x(1,2)-E S 19: 65.1363 5( 5) V-C-C-x-D-x(2)-H-C-C-P-[AQS]-G-x(0,1)-T-x(0,2)-V-x-[AD]-[ER]-[DST]-x-[ER]-[KR]-x-[AIV] T 20: 60.7896 5( 5) G-V-C-C-x-D-x(2)-H-C-C-P-x-G-x(2)-C-[ADES]-[AES]-x(3)-[KR]-C-[ILV] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 119.3040 5( 5) C-x(1,2)-E-x(2)-C-P-[DEG]-[GT]-x-T-C-C-x(2)-[NPQ]-[QST]-G-x(2)-G-C-C-P-[FY]-x(2)-[AG]-V-C-C-x-D-x-[IV]-H-C-C-P-[AES]-x(3)-C-[DH]-[ET]-[DEQ] Occurences: 5(5) GRN_CAVPO : 283- 330: vwdve CdqEvsCPEGqTCCrlQSGkwGCCPFpkAVCCeDhVHCCPErfrCHTE kdtce GRN_HUMAN : 284- 331: vgdvk CdmEvsCPDGyTCCrlQSGawGCCPFtqAVCCeDhIHCCPAgftCDTQ kgtce GRN_MOUSE : 282- 329: vkevk CdmEvsCPEGyTCCrlNTGawGCCPFakAVCCeDhIHCCPAgfqCHTE kgtce GRN_RAT : 281- 328: vnevk CdlEvsCPDGyTCCrlNTGawGCCPFtkAVCCeDhIHCCPAgfqCHTE tgtce PMD1_LOCMI : 2- 48: s Ct-EktCPGTeTCCttPQGeeGCCPYkeGVCClDgIHCCPSgtvCDED hrrci B 2: 108.7830 5( 5) P-x(0,1)-G-x(1,2)-T-C-C-x(2)-[NPQ]-[QST]-G-x(2)-G-C-C-P-[FY]-x(2)-[AG]-V-C-C-x-D-x-[IV]-H-C-C-P-[AES]-x(3)-C-[DH]-[ET]-[DEQ]-x(3)-C Occurences: 5(5) GRN_CAVPO : 290- 334: qevsc PeGq-TCCrlQSGkwGCCPFpkAVCCeDhVHCCPErfrCHTEkdtC eqgll GRN_HUMAN : 291- 335: mevsc PdGy-TCCrlQSGawGCCPFtqAVCCeDhIHCCPAgftCDTQkgtC eqgph GRN_MOUSE : 289- 333: mevsc PeGy-TCCrlNTGawGCCPFakAVCCeDhIHCCPAgfqCHTEkgtC emgil GRN_RAT : 288- 332: levsc PdGy-TCCrlNTGawGCCPFtkAVCCeDhIHCCPAgfqCHTEtgtC elgvl PMD1_LOCMI : 8- 52: tektc P-GteTCCttPQGeeGCCPYkeGVCClDgIHCCPSgtvCDEDhrrC iq C 3: 108.7830 5( 5) C-x(1,2)-G-x(1,2)-T-C-C-x(2)-[NPQ]-[QST]-G-x(2)-G-C-C-P-[FY]-x(2)-[AG]-V-C-C-x-D-x-[IV]-H-C-C-P-[AES]-x(3)-C-[DH]-[ET]-[DEQ]-x(3)-C Occurences: 5(5) GRN_CAVPO : 289- 334: dqevs CpeGq-TCCrlQSGkwGCCPFpkAVCCeDhVHCCPErfrCHTEkdtC eqgll GRN_HUMAN : 290- 335: dmevs CpdGy-TCCrlQSGawGCCPFtqAVCCeDhIHCCPAgftCDTQkgtC eqgph GRN_MOUSE : 288- 333: dmevs CpeGy-TCCrlNTGawGCCPFakAVCCeDhIHCCPAgfqCHTEkgtC emgil GRN_RAT : 287- 332: dlevs CpdGy-TCCrlNTGawGCCPFtkAVCCeDhIHCCPAgfqCHTEtgtC elgvl PMD1_LOCMI : 7- 52: ctekt Cp-GteTCCttPQGeeGCCPYkeGVCClDgIHCCPSgtvCDEDhrrC iq D 4: 105.1130 5( 5) G-x(1,2)-T-C-C-x(2)-[NPQ]-[QST]-G-x(2)-G-C-C-P-[FY]-x(2)-[AG]-V-C-C-x-D-x-[IV]-H-C-C-P-[AES]-x(3)-C-[DH]-[ET]-[DEQ]-x(3)-C Occurences: 5(5) GRN_CAVPO : 292- 334: vscpe Gq-TCCrlQSGkwGCCPFpkAVCCeDhVHCCPErfrCHTEkdtC eqgll GRN_HUMAN : 293- 335: vscpd Gy-TCCrlQSGawGCCPFtqAVCCeDhIHCCPAgftCDTQkgtC eqgph GRN_MOUSE : 291- 333: vscpe Gy-TCCrlNTGawGCCPFakAVCCeDhIHCCPAgfqCHTEkgtC emgil GRN_RAT : 290- 332: vscpd Gy-TCCrlNTGawGCCPFtkAVCCeDhIHCCPAgfqCHTEtgtC elgvl PMD1_LOCMI : 9- 52: ektcp GteTCCttPQGeeGCCPYkeGVCClDgIHCCPSgtvCDEDhrrC iq E 5: 91.7064 5( 5) G-x-C-P-x(2)-[EQ]-[AG]-[SV]-C-C-x-D-x-[IV]-H-C-C-P-x-G-[AT]-x-C-D-x-[DV]-H-x-R-C-[IV]-[QST] Occurences: 5(5) GRN_CAVPO : 134- 166: ldgsw GcCPmpQASCCeDrVHCCPhGAsCDlVHiRCVT algsh GRN_HUMAN : 148- 180: vdgsw GcCPmpQASCCeDrVHCCPhGAfCDlVHtRCIT ptgth GRN_MOUSE : 147- 179: vdgsw GcCPmpQASCCeDrVHCCPhGAsCDlVHtRCVS ptgth GRN_RAT : 147- 179: idgsw GcCPmpQASCCeDrVHCCPhGAsCDlVHtRCIS ptgth PMD1_LOCMI : 22- 54: pqgee GcCPykEGVCClDgIHCCPsGTvCDeDHrRCIQ F 6: 88.5245 5( 5) G-x-C-P-x(3)-[AG]-[SV]-C-C-x-D-x-[IV]-H-C-C-P-x-G-[AT]-x-C-D-x-[DV]-H-x-R-C-[IV]-[QST] Occurences: 5(5) GRN_CAVPO : 134- 166: ldgsw GcCPmpqASCCeDrVHCCPhGAsCDlVHiRCVT algsh GRN_HUMAN : 148- 180: vdgsw GcCPmpqASCCeDrVHCCPhGAfCDlVHtRCIT ptgth GRN_MOUSE : 147- 179: vdgsw GcCPmpqASCCeDrVHCCPhGAsCDlVHtRCVS ptgth GRN_RAT : 147- 179: idgsw GcCPmpqASCCeDrVHCCPhGAsCDlVHtRCIS ptgth PMD1_LOCMI : 22- 54: pqgee GcCPykeGVCClDgIHCCPsGTvCDeDHrRCIQ G 7: 87.5176 5( 5) P-x(1,3)-G-x(3,4)-C-C-[PQ]-x(2)-[EH]-[AG]-V-C-C-x-D-x(2)-H-C-C-P-[AS]-G-x-[TV]-C-[DN]-x-[DK]-x-R-x-C Occurences: 5(5) GRN_CAVPO : 455- 492: rqtcc PklgGgwa-CCQlpHAVCCeDgqHCCPAGyTCNvKaRsC ekaad GRN_CAVPO : 455- 492: rqtcc Pkl-GggwaCCQlpHAVCCeDgqHCCPAGyTCNvKaRsC ekaad GRN_HUMAN : 458- 495: ggtcc PslgGswa-CCQlpHAVCCeDrqHCCPAGyTCNvKaRsC ekevv GRN_HUMAN : 458- 495: ggtcc Psl-GgswaCCQlpHAVCCeDrqHCCPAGyTCNvKaRsC ekevv GRN_MOUSE : 456- 493: gqtcc PslkGswa-CCQlpHAVCCeDrqHCCPAGyTCNvKaRtC ekdvd GRN_RAT : 455- 492: gqtcc PslkGswa-CCQlpHAVCCeDrqHCCPAGyTCNvKaRtC ekdag PMD1_LOCMI : 17- 52: tcctt Pq--Geeg-CCPykEGVCClDgiHCCPSGtVCDeDhRrC iq H 8: 85.3544 5( 5) G-x-C-P-x(4)-[SV]-C-C-x-D-x-[IV]-H-C-C-P-x-G-[AT]-x-C-D-x-[DV]-H-x-R-C-[IV]-[QST] Occurences: 5(5) GRN_CAVPO : 134- 166: ldgsw GcCPmpqaSCCeDrVHCCPhGAsCDlVHiRCVT algsh GRN_HUMAN : 148- 180: vdgsw GcCPmpqaSCCeDrVHCCPhGAfCDlVHtRCIT ptgth GRN_MOUSE : 147- 179: vdgsw GcCPmpqaSCCeDrVHCCPhGAsCDlVHtRCVS ptgth GRN_RAT : 147- 179: idgsw GcCPmpqaSCCeDrVHCCPhGAsCDlVHtRCIS ptgth PMD1_LOCMI : 22- 54: pqgee GcCPykegVCClDgIHCCPsGTvCDeDHrRCIQ I 9: 82.3663 5( 5) P-x(2)-[EQ]-[AG]-[SV]-C-C-x-D-x-[IV]-H-C-C-P-x-G-[AT]-x-C-D-x-[DV]-H-x(0,1)-R-x(0,1)-C-[IV]-[QST] Occurences: 5(5) GRN_CAVPO : 137- 166: swgcc PmpQASCCeDrVHCCPhGAsCDlVHiR-CVT algsh GRN_HUMAN : 151- 180: swgcc PmpQASCCeDrVHCCPhGAfCDlVHtR-CIT ptgth GRN_MOUSE : 150- 179: swgcc PmpQASCCeDrVHCCPhGAsCDlVHtR-CVS ptgth GRN_RAT : 150- 179: swgcc PmpQASCCeDrVHCCPhGAsCDlVHtR-CIS ptgth PMD1_LOCMI : 25- 54: eegcc PykEGVCClDgIHCCPsGTvCDeDHrR-CIQ PMD1_LOCMI : 25- 54: eegcc PykEGVCClDgIHCCPsGTvCDeDH-RrCIQ J 10: 82.1833 5( 5) G-x-C-P-x(5)-C-C-x-D-x-[IV]-H-C-C-P-x-G-[AT]-x-C-D-x-[DV]-H-x-R-C-[IV]-[QST] Occurences: 5(5) GRN_CAVPO : 134- 166: ldgsw GcCPmpqasCCeDrVHCCPhGAsCDlVHiRCVT algsh GRN_HUMAN : 148- 180: vdgsw GcCPmpqasCCeDrVHCCPhGAfCDlVHtRCIT ptgth GRN_MOUSE : 147- 179: vdgsw GcCPmpqasCCeDrVHCCPhGAsCDlVHtRCVS ptgth GRN_RAT : 147- 179: idgsw GcCPmpqasCCeDrVHCCPhGAsCDlVHtRCIS ptgth PMD1_LOCMI : 22- 54: pqgee GcCPykegvCClDgIHCCPsGTvCDeDHrRCIQ K 11: 76.4843 5( 5) C-C-P-[FY]-x(2)-G-V-C-C-x-D-x(2)-H-C-C-P-x-G-x(2)-C-[ADES]-[AES]-x(3)-[KR]-C-[ILV] Occurences: 5(5) GRN_CAVPO : 540- 570: rggwa CCPFhqGVCCkDqrHCCPaGfhCESqgtRCV hkksl GRN_HUMAN : 543- 573: rqgwa CCPYrqGVCCaDrrHCCPaGfrCAArgtKCL rreap GRN_MOUSE : 539- 569: agvwa CCPYlkGVCCrDgrHCCPgGfhCSArgtKCL rkkip GRN_RAT : 538- 568: qggwa CCPYvkGVCCrDgrHCCPiGfhCSAkgtKCL rkktp PMD1_LOCMI : 23- 53: qgeeg CCPYkeGVCClDgiHCCPsGtvCDEdhrRCI q L 12: 74.3405 12( 5) C-x(4,5)-G-x(2)-G-C-C-P-x(2)-[EK]-[AG]-V-C-C-x-D-x(2)-H-C-C-P-[AEQS]-x(3)-C-x(1,2)-E Occurences: 12(5) GRN_CAVPO : 295- 330: pegqt CcrlqsGkwGCCPfpKAVCCeDhvHCCPErfrChtE kdtce GRN_CAVPO : 296- 330: egqtc Crlqs-GkwGCCPfpKAVCCeDhvHCCPErfrChtE kdtce GRN_HUMAN : 378- 413: pssdt CcqltsGewGCCPipEAVCCsDhqHCCPQgytCvaE gqcqr GRN_HUMAN : 379- 413: ssdtc Cqlts-GewGCCPipEAVCCsDhqHCCPQgytCvaE gqcqr GRN_MOUSE : 294- 329: pegyt CcrlntGawGCCPfaKAVCCeDhiHCCPAgfqChtE kgtce GRN_MOUSE : 295- 329: egytc Crlnt-GawGCCPfaKAVCCeDhiHCCPAgfqChtE kgtce GRN_RAT : 293- 328: pdgyt CcrlntGawGCCPftKAVCCeDhiHCCPAgfqChtE tgtce GRN_RAT : 294- 328: dgytc Crlnt-GawGCCPftKAVCCeDhiHCCPAgfqChtE tgtce GRN_RAT : 375- 410: psnnt CcrlssGdwGCCPmpEAVCClDhqHCCPQgfkCmdE gycqk GRN_RAT : 376- 410: snntc Crlss-GdwGCCPmpEAVCClDhqHCCPQgfkCmdE gycqk PMD1_LOCMI : 13- 47: pgtet CcttpqGeeGCCPykEGVCClDgiHCCPSgtvCd-E dhrrc PMD1_LOCMI : 14- 47: gtetc Cttpq-GeeGCCPykEGVCClDgiHCCPSgtvCd-E dhrrc M 13: 72.7827 6( 5) G-[ADEG]-x-[AG]-C-C-P-x(3)-[AG]-V-C-C-x-D-x(2)-H-C-C-P-[AQS]-G-x(2)-C-x(0,2)-E Occurences: 6(5) GRN_CAVPO : 536- 563: crdsr GGwACCPfhqGVCCkDqrHCCPAGfhC--E sqgtr GRN_HUMAN : 384- 413: cqlts GEwGCCPipeAVCCsDhqHCCPQGytCvaE gqcqr GRN_MOUSE : 300- 329: crlnt GAwGCCPfakAVCCeDhiHCCPAGfqChtE kgtce GRN_RAT : 299- 328: crlnt GAwGCCPftkAVCCeDhiHCCPAGfqChtE tgtce GRN_RAT : 381- 410: crlss GDwGCCPmpeAVCClDhqHCCPQGfkCmdE gycqk PMD1_LOCMI : 19- 47: cttpq GEeGCCPykeGVCClDgiHCCPSGtvCd-E dhrrc N 14: 72.3143 5( 5) C-P-[FY]-x(2)-G-V-C-C-x-D-x(2)-H-C-C-P-x-G-x(2)-C-[ADES]-[AES]-x(3)-[KR]-C-[ILV] Occurences: 5(5) GRN_CAVPO : 541- 570: ggwac CPFhqGVCCkDqrHCCPaGfhCESqgtRCV hkksl GRN_HUMAN : 544- 573: qgwac CPYrqGVCCaDrrHCCPaGfrCAArgtKCL rreap GRN_MOUSE : 540- 569: gvwac CPYlkGVCCrDgrHCCPgGfhCSArgtKCL rkkip GRN_RAT : 539- 568: ggwac CPYvkGVCCrDgrHCCPiGfhCSAkgtKCL rkktp PMD1_LOCMI : 24- 53: geegc CPYkeGVCClDgiHCCPsGtvCDEdhrRCI q O 15: 69.6732 5( 5) C-C-x-D-x-[IV]-H-C-C-P-x-G-[AT]-x-C-D-x-[DV]-H-x-R-C-[IV]-[QST] Occurences: 5(5) GRN_CAVPO : 143- 166: mpqas CCeDrVHCCPhGAsCDlVHiRCVT algsh GRN_HUMAN : 157- 180: mpqas CCeDrVHCCPhGAfCDlVHtRCIT ptgth GRN_MOUSE : 156- 179: mpqas CCeDrVHCCPhGAsCDlVHtRCVS ptgth GRN_RAT : 156- 179: mpqas CCeDrVHCCPhGAsCDlVHtRCIS ptgth PMD1_LOCMI : 31- 54: ykegv CClDgIHCCPsGTvCDeDHrRCIQ P 16: 69.1732 5( 5) C-C-x(0,1)-D-x-[IV]-H-C-C-P-x-G-[AT]-x-C-D-x-[DV]-H-x-R-C-[IV]-[QST] Occurences: 5(5) GRN_CAVPO : 143- 166: mpqas CCeDrVHCCPhGAsCDlVHiRCVT algsh GRN_HUMAN : 157- 180: mpqas CCeDrVHCCPhGAfCDlVHtRCIT ptgth GRN_MOUSE : 156- 179: mpqas CCeDrVHCCPhGAsCDlVHtRCVS ptgth GRN_RAT : 156- 179: mpqas CCeDrVHCCPhGAsCDlVHtRCIS ptgth PMD1_LOCMI : 31- 54: ykegv CClDgIHCCPsGTvCDeDHrRCIQ Q 17: 68.1442 5( 5) P-[FY]-x(2)-G-V-C-C-x-D-x(2)-H-C-C-P-x-G-x(2)-C-[ADES]-[AES]-x(3)-[KR]-C-[ILV] Occurences: 5(5) GRN_CAVPO : 542- 570: gwacc PFhqGVCCkDqrHCCPaGfhCESqgtRCV hkksl GRN_HUMAN : 545- 573: gwacc PYrqGVCCaDrrHCCPaGfrCAArgtKCL rreap GRN_MOUSE : 541- 569: vwacc PYlkGVCCrDgrHCCPgGfhCSArgtKCL rkkip GRN_RAT : 540- 568: gwacc PYvkGVCCrDgrHCCPiGfhCSAkgtKCL rkktp PMD1_LOCMI : 25- 53: eegcc PYkeGVCClDgiHCCPsGtvCDEdhrRCI q R 18: 66.5004 6( 5) G-C-C-P-x(2)-[EK]-[AG]-V-C-C-x-D-x(2)-H-C-C-P-[AEQS]-x(3)-C-x(1,2)-E Occurences: 6(5) GRN_CAVPO : 304- 330: qsgkw GCCPfpKAVCCeDhvHCCPErfrChtE kdtce GRN_HUMAN : 387- 413: tsgew GCCPipEAVCCsDhqHCCPQgytCvaE gqcqr GRN_MOUSE : 303- 329: ntgaw GCCPfaKAVCCeDhiHCCPAgfqChtE kgtce GRN_RAT : 302- 328: ntgaw GCCPftKAVCCeDhiHCCPAgfqChtE tgtce GRN_RAT : 384- 410: ssgdw GCCPmpEAVCClDhqHCCPQgfkCmdE gycqk PMD1_LOCMI : 22- 47: pqgee GCCPykEGVCClDgiHCCPSgtvCd-E dhrrc S 19: 65.1363 5( 5) V-C-C-x-D-x(2)-H-C-C-P-[AQS]-G-x(0,1)-T-x(0,2)-V-x-[AD]-[ER]-[DST]-x-[ER]-[KR]-x-[AIV] Occurences: 5(5) GRN_CAVPO : 470- 496: qlpha VCCeDgqHCCPAGyTcnVkARScEKaA dgahl GRN_HUMAN : 473- 499: qlpha VCCeDrqHCCPAGyTcnVkARScEKeV vsaqp GRN_MOUSE : 471- 497: qlpha VCCeDrqHCCPAGyTcnVkARTcEKdV dfiqp GRN_RAT : 470- 496: qlpha VCCeDrqHCCPAGyTcnVkARTcEKdA gsvqp PMD1_LOCMI : 30- 53: pykeg VCClDgiHCCPSG-T--VcDEDhRRcI q T 20: 60.7896 5( 5) G-V-C-C-x-D-x(2)-H-C-C-P-x-G-x(2)-C-[ADES]-[AES]-x(3)-[KR]-C-[ILV] Occurences: 5(5) GRN_CAVPO : 546- 570: cpfhq GVCCkDqrHCCPaGfhCESqgtRCV hkksl GRN_HUMAN : 549- 573: cpyrq GVCCaDrrHCCPaGfrCAArgtKCL rreap GRN_MOUSE : 545- 569: cpylk GVCCrDgrHCCPgGfhCSArgtKCL rkkip GRN_RAT : 544- 568: cpyvk GVCCrDgrHCCPiGfhCSAkgtKCL rkktp PMD1_LOCMI : 29- 53: cpyke GVCClDgiHCCPsGtvCDEdhrRCI q Number of patterns evaluated by Pratt:8233 Total running time: 3 seconds