------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 13 sequences from file GRANINS_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 13 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GRANINS_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CMGA_BOVIN 449 CMGA_HUMAN 457 CMGA_MOUSE 463 CMGA_PIG 446 CMGA_RAT 466 CMGA_STRCA 104 SG1_BOVIN 646 SG1_HUMAN 677 SG1_MOUSE 677 SG2_BOVIN 613 SG2_HUMAN 617 SG2_MOUSE 617 SG2_RAT 619 Pratt run started at Thu Feb 6 19:42:51 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 19.8503 13( 13) E-L-x(0,1)-E-x(2)-A-x(2,3)-L 2: 19.8503 13( 13) E-L-x(0,1)-E-x-L-x(0,1)-A 3: 19.8503 13( 13) E-x(5)-L-x-K-x(2,3)-P-x(4,5)-E 4: 18.8503 13( 13) L-E-x-L-x(3,5)-E-x(3,5)-E 5: 16.1802 14( 13) D-x-E-L-x(3,4)-A 6: 16.1802 17( 13) E-x(2)-E-x(5)-E-x(3,4)-S 7: 15.6802 13( 13) L-x(0,1)-E-x(2)-A-x(2,3)-L 8: 15.6802 13( 13) L-x(0,1)-E-x(2,3)-A-x(2)-L 9: 15.6802 15( 13) E-x(1,2)-E-x(0,1)-L-x(3)-A 10: 15.6802 13( 13) I-E-x(1,2)-L-x(2,3)-A 11: 15.6802 20( 13) A-x(3,4)-E-x(0,1)-L-x(3)-A 12: 15.6802 15( 13) L-x(3)-E-x(1,2)-E-x(3,4)-A 13: 15.6802 13( 13) E-x(2)-E-x(0,1)-L-x(2,3)-L 14: 15.6802 17( 13) E-x(2,4)-E-L-x(2)-L 15: 15.6802 28( 13) E-x(4,5)-E-x(1,2)-A-x(4)-E 16: 15.6802 13( 13) R-x(0,1)-R-x(1,2)-E-x-Q 17: 15.6802 13( 13) R-x(2)-E-x(1,2)-Q-x(1,2)-L 18: 15.6802 18( 13) R-x(2)-E-x(2,3)-E-x(0,1)-E 19: 15.6802 22( 13) R-x(2,3)-E-x(2)-E-x(0,1)-E 20: 15.6802 20( 13) E-x(3)-Q-x(4)-E-x(0,2)-E Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 33.0691 13( 13) E-[SV]-[ILV]-x-[DNQ]-[AEST]-L-x-K-x(2,3)-P-x(4,5)-E-x(2)-[DEQ] B 2: 32.6600 17( 13) E-x(2,4)-E-L-[EG]-x-L-[AST]-[AG]-x-[DENS]-x-[EQ]-x-[EQR] C 3: 26.3464 13( 13) E-x(2)-E-x(0,1)-L-x(2,3)-L-[ASV]-x(2)-[DEP]-x(2)-[ILM]-[ENQ] D 4: 24.2858 13( 13) L-E-x-L-x(3,5)-E-x(3,5)-E-x-[FILV]-[AS] E 5: 23.0340 13( 13) E-L-x(0,1)-E-x-[LV]-A-x(2,3)-L F 6: 23.0204 13( 13) E-L-x(0,1)-E-x-L-x(0,1)-A-x(2)-[AL] G 7: 22.8192 17( 13) A-x(3,4)-E-x(0,1)-L-[EQR]-x(2)-A-x(3)-[EQS]-[AEGQS] H 8: 21.4786 15( 13) E-x(1,2)-E-x(0,1)-L-[ER]-x(2)-A-x(4)-[AES] I 9: 20.9305 13( 13) I-E-x(1,2)-L-x(2,3)-A-x(3)-[EQS]-[AES] J 10: 20.0403 15( 13) E-x(2)-E-[AEGNST]-x(3)-[DEGS]-E-x(3,4)-S K 11: 19.3128 14( 13) R-x-[ADGNPST]-E-x(2,3)-E-x(0,1)-E-[ENQS] L 12: 18.8639 13( 13) L-x(0,1)-E-x-[LV]-A-x(2,3)-L M 13: 18.3544 13( 13) L-x-[AEQ]-x-E-x(1,2)-E-x(3,4)-A N 14: 18.3462 22( 13) E-x(4,5)-E-x(1,2)-A-[AEN]-x(3)-E O 15: 17.8932 19( 13) R-x(2,3)-E-x(2)-E-x(0,1)-E-[ENQS] P 16: 16.1802 14( 13) D-x-E-L-x(3,4)-A Q 17: 15.6802 13( 13) L-x(0,1)-E-x(2,3)-A-x(2)-L R 18: 15.6802 13( 13) R-x(0,1)-R-x(1,2)-E-x-Q S 19: 15.6802 13( 13) R-x(2)-E-x(1,2)-Q-x(1,2)-L T 20: 15.6802 18( 13) R-x(2)-E-x(2,3)-E-x(0,1)-E Best patterns with alignements: fitness hits(seqs) Pattern A 1: 33.0691 13( 13) E-[SV]-[ILV]-x-[DNQ]-[AEST]-L-x-K-x(2,3)-P-x(4,5)-E-x(2)-[DEQ] Occurences: 13(13) CMGA_BOVIN : 38- 58: mkciv EVIsDTLsKps-PmpvskEcfE tlrgd CMGA_HUMAN : 38- 58: mkciv EVIsDTLsKps-PmpvskEcfE tlrgd CMGA_MOUSE : 38- 58: mkcvl EVIsDSLsKps-PmpvspEclE tlqgd CMGA_PIG : 36- 56: mkciv EVIsDTLsKps-PmpvsqEcfE tlrgd CMGA_RAT : 38- 58: mkcvl EVIsDSLsKps-PmpvspEclE tlqgd CMGA_STRCA : 20- 40: mkciv EVIsDTLsKpn-PlpiseEclE tlrgd SG1_BOVIN : 39- 59: thcii EVLsNALlKssaPpitp-EcrQ vlkks SG1_HUMAN : 39- 59: trcii EVLsNALsKssaPpitp-EcrQ vlkts SG1_MOUSE : 39- 59: trcii EVLsNALsKssvPtitp-EcrQ vlkks SG2_BOVIN : 198- 219: nlatl ESVfQELgKltgPnsqkrEraD eeqkl SG2_HUMAN : 199- 220: slatl ESVfQELgKltgPnnqkrErmD eeqkl SG2_MOUSE : 201- 222: slatl ESVfQELgKltgPsnqkrErvD eeqkl SG2_RAT : 201- 222: slatl ESVfQELgKltgPsnqkrErvD eeqkl B 2: 32.6600 17( 13) E-x(2,4)-E-L-[EG]-x-L-[AST]-[AG]-x-[DENS]-x-[EQ]-x-[EQR] Occurences: 17(13) CMGA_BOVIN : 422- 437: anrrp Edq--ELEsLSAiEaElE kvahq CMGA_HUMAN : 430- 445: anrrp Edq--ELEsLSAiEaElE kvahq CMGA_MOUSE : 436- 451: anrra Edq--ELEsLSAiEaElE kvahq CMGA_PIG : 419- 434: anrrp Edq--ELEsLSAiEaElE kvapq CMGA_RAT : 439- 454: anrra Edq--ELEsLSAiEaElE kvahq CMGA_STRCA : 80- 95: qqrrt Edq--ELEsLAAiEaElE svahs SG1_BOVIN : 617- 634: qgvlt EeeekELEnLAAmDlElQ kiaek SG1_BOVIN : 618- 634: gvlte Eeek-ELEnLAAmDlElQ kiaek SG1_BOVIN : 619- 634: vltee Eek--ELEnLAAmDlElQ kiaek SG1_HUMAN : 650- 667: qtvlt EdekkELEnLAAmDlElQ kiaek SG1_HUMAN : 652- 667: vlted Ekk--ELEnLAAmDlElQ kiaek SG1_MOUSE : 651- 667: rvlta Eekk-ELEnLAAmDlElQ kiaek SG1_MOUSE : 652- 667: vltae Ekk--ELEnLAAmDlElQ kiaek SG2_BOVIN : 198- 215: nlatl EsvfqELGkLTGpNsQkR erade SG2_HUMAN : 199- 216: slatl EsvfqELGkLTGpNnQkR ermde SG2_MOUSE : 201- 218: slatl EsvfqELGkLTGpSnQkR ervde SG2_RAT : 201- 218: slatl EsvfqELGkLTGpSnQkR ervde C 3: 26.3464 13( 13) E-x(2)-E-x(0,1)-L-x(2,3)-L-[ASV]-x(2)-[DEP]-x(2)-[ILM]-[ENQ] Occurences: 13(13) CMGA_BOVIN : 422- 437: anrrp EdqE-Les-LSaiEaeLE kvahq CMGA_HUMAN : 430- 445: anrrp EdqE-Les-LSaiEaeLE kvahq CMGA_MOUSE : 436- 451: anrra EdqE-Les-LSaiEaeLE kvahq CMGA_PIG : 419- 434: anrrp EdqE-Les-LSaiEaeLE kvapq CMGA_RAT : 439- 454: anrra EdqE-Les-LSaiEaeLE kvahq CMGA_STRCA : 80- 95: qqrrt EdqE-Les-LAaiEaeLE svahs SG1_BOVIN : 619- 634: vltee EekE-Len-LAamDleLQ kiaek SG1_HUMAN : 652- 667: vlted EkkE-Len-LAamDleLQ kiaek SG1_MOUSE : 652- 667: vltae EkkE-Len-LAamDleLQ kiaek SG2_BOVIN : 499- 516: ndkdq ElgEyLarmLVkyPeiMN anpak SG2_HUMAN : 503- 520: ndkdq ElgEyLarmLVkyPeiIN snqvk SG2_MOUSE : 503- 520: nlndq ElgEyLarmLVkyPelLN tnqlk SG2_RAT : 505- 522: ndkdq ElgEyLarmLVkyPelMN tnqlk D 4: 24.2858 13( 13) L-E-x-L-x(3,5)-E-x(3,5)-E-x-[FILV]-[AS] Occurences: 13(13) CMGA_BOVIN : 426- 440: pedqe LEsLsai--Eael--EkVA hqlee CMGA_HUMAN : 434- 448: pedqe LEsLsai--Eael--EkVA hqlqa CMGA_MOUSE : 440- 454: aedqe LEsLsai--Eael--EkVA hqlqa CMGA_PIG : 423- 437: pedqe LEsLsai--Eael--EkVA pqlqs CMGA_RAT : 443- 457: aedqe LEsLsai--Eael--EkVA hqlqa CMGA_STRCA : 84- 98: tedqe LEsLaai--Eael--EsVA hslqa SG1_BOVIN : 623- 641: eeeke LEnLaamdlElqkiaEkFS gtrrg SG1_HUMAN : 656- 674: dekke LEnLaamdlElqkiaEkFS qrg SG1_MOUSE : 656- 674: eekke LEnLaamdlElqkiaEkFS qrg SG2_BOVIN : 590- 606: llvkv LEyLnqekaEkgr--EhIA krame SG2_HUMAN : 594- 610: llmkv LEyLnqekaEkgr--EhIA krame SG2_MOUSE : 594- 610: mllkv LEyLnqeqaEqgr--EhLA krame SG2_RAT : 596- 612: mllkv LEyLnqeqaEqgr--EhLA krame E 5: 23.0340 13( 13) E-L-x(0,1)-E-x-[LV]-A-x(2,3)-L Occurences: 13(13) CMGA_BOVIN : 435- 443: saiea EL-EkVAhq-L eelrr CMGA_HUMAN : 443- 451: saiea EL-EkVAhq-L qalrr CMGA_MOUSE : 449- 457: saiea EL-EkVAhq-L qalrr CMGA_PIG : 432- 440: saiea EL-EkVApq-L qslrr CMGA_RAT : 452- 460: saiea EL-EkVAhq-L qalrr CMGA_STRCA : 93- 101: aaiea EL-EsVAhs-L qal SG1_BOVIN : 622- 631: eeeek EL-EnLAamdL elqki SG1_HUMAN : 655- 664: edekk EL-EnLAamdL elqki SG1_MOUSE : 655- 664: aeekk EL-EnLAamdL elqki SG2_BOVIN : 499- 508: ndkdq ELgEyLArm-L vkype SG2_HUMAN : 503- 512: ndkdq ELgEyLArm-L vkype SG2_MOUSE : 503- 512: nlndq ELgEyLArm-L vkype SG2_RAT : 505- 514: ndkdq ELgEyLArm-L vkype F 6: 23.0204 13( 13) E-L-x(0,1)-E-x-L-x(0,1)-A-x(2)-[AL] Occurences: 13(13) CMGA_BOVIN : 425- 434: rpedq EL-EsLsAieA elekv CMGA_HUMAN : 433- 442: rpedq EL-EsLsAieA elekv CMGA_MOUSE : 439- 448: raedq EL-EsLsAieA elekv CMGA_PIG : 422- 431: rpedq EL-EsLsAieA elekv CMGA_RAT : 442- 451: raedq EL-EsLsAieA elekv CMGA_STRCA : 83- 92: rtedq EL-EsLaAieA elesv SG1_BOVIN : 622- 631: eeeek EL-EnLaAmdL elqki SG1_HUMAN : 655- 664: edekk EL-EnLaAmdL elqki SG1_MOUSE : 655- 664: aeekk EL-EnLaAmdL elqki SG2_BOVIN : 499- 508: ndkdq ELgEyL-ArmL vkype SG2_HUMAN : 503- 512: ndkdq ELgEyL-ArmL vkype SG2_MOUSE : 503- 512: nlndq ELgEyL-ArmL vkype SG2_RAT : 505- 514: ndkdq ELgEyL-ArmL vkype G 7: 22.8192 17( 13) A-x(3,4)-E-x(0,1)-L-[EQR]-x(2)-A-x(3)-[EQS]-[AEGQS] Occurences: 17(13) CMGA_BOVIN : 431- 445: lesls Aiea-E-LEkvAhqlEE lrrg CMGA_HUMAN : 439- 453: lesls Aiea-E-LEkvAhqlQA lrrg CMGA_MOUSE : 445- 459: lesls Aiea-E-LEkvAhqlQA lrrg CMGA_PIG : 428- 442: lesls Aiea-E-LEkvApqlQS lrrg CMGA_RAT : 448- 462: lesls Aiea-E-LEkvAhqlQA lrrg CMGA_STRCA : 88- 103: elesl AaieaE-LEsvAhslQA l CMGA_STRCA : 89- 103: lesla Aiea-E-LEsvAhslQA l SG1_BOVIN : 627- 642: elenl AamdlE-LQkiAekfSG trrg SG1_BOVIN : 628- 642: lenla Amdl-E-LQkiAekfSG trrg SG1_HUMAN : 660- 675: elenl AamdlE-LQkiAekfSQ rg SG1_HUMAN : 661- 675: lenla Amdl-E-LQkiAekfSQ rg SG1_MOUSE : 660- 675: elenl AamdlE-LQkiAekfSQ rg SG1_MOUSE : 661- 675: lenla Amdl-E-LQkiAekfSQ rg SG2_BOVIN : 58- 74: pemir AleyiEkLRqqAhkeES spdyn SG2_HUMAN : 58- 74: pemir AleyiEnLRqqAhkeES spdyn SG2_MOUSE : 58- 74: pemir AleyiEkLRqqAhreES spdyn SG2_RAT : 58- 74: pemir AleyiEkLRqqAhreES spdyn H 8: 21.4786 15( 13) E-x(1,2)-E-x(0,1)-L-[ER]-x(2)-A-x(4)-[AES] Occurences: 15(13) CMGA_BOVIN : 433- 445: slsai Ea-E-LEkvAhqleE lrrg CMGA_HUMAN : 441- 453: slsai Ea-E-LEkvAhqlqA lrrg CMGA_MOUSE : 447- 459: slsai Ea-E-LEkvAhqlqA lrrg CMGA_PIG : 430- 442: slsai Ea-E-LEkvApqlqS lrrg CMGA_RAT : 450- 462: slsai Ea-E-LEkvAhqlqA lrrg CMGA_STRCA : 80- 93: qqrrt EdqE-LEslAaieaE lesva CMGA_STRCA : 91- 103: slaai Ea-E-LEsvAhslqA l SG1_BOVIN : 619- 632: vltee EekE-LEnlAamdlE lqkia SG1_BOVIN : 620- 632: lteee Ek-E-LEnlAamdlE lqkia SG1_HUMAN : 652- 665: vlted EkkE-LEnlAamdlE lqkia SG1_MOUSE : 652- 665: vltae EkkE-LEnlAamdlE lqkia SG2_BOVIN : 60- 74: miral EyiEkLRqqAhkeeS spdyn SG2_HUMAN : 60- 74: miral EyiEnLRqqAhkeeS spdyn SG2_MOUSE : 60- 74: miral EyiEkLRqqAhreeS spdyn SG2_RAT : 60- 74: miral EyiEkLRqqAhreeS spdyn I 9: 20.9305 13( 13) I-E-x(1,2)-L-x(2,3)-A-x(3)-[EQS]-[AES] Occurences: 13(13) CMGA_BOVIN : 432- 445: eslsa IEaeLekvAhqlEE lrrg CMGA_HUMAN : 440- 453: eslsa IEaeLekvAhqlQA lrrg CMGA_MOUSE : 446- 459: eslsa IEaeLekvAhqlQA lrrg CMGA_PIG : 429- 442: eslsa IEaeLekvApqlQS lrrg CMGA_RAT : 449- 462: eslsa IEaeLekvAhqlQA lrrg CMGA_STRCA : 90- 103: eslaa IEaeLesvAhslQA l SG1_BOVIN : 38- 49: vthci IEv-Lsn-AllkSS appit SG1_HUMAN : 38- 49: vtrci IEv-Lsn-AlskSS appit SG1_MOUSE : 38- 49: vtrci IEv-Lsn-AlskSS vptit SG2_BOVIN : 62- 74: raley IEk-LrqqAhkeES spdyn SG2_HUMAN : 62- 74: raley IEn-LrqqAhkeES spdyn SG2_MOUSE : 62- 74: raley IEk-LrqqAhreES spdyn SG2_RAT : 62- 74: raley IEk-LrqqAhreES spdyn J 10: 20.0403 15( 13) E-x(2)-E-[AEGNST]-x(3)-[DEGS]-E-x(3,4)-S Occurences: 15(13) CMGA_BOVIN : 55- 68: mpvsk EcfETlrgDEril-S ilrhq CMGA_HUMAN : 55- 68: mpvsk EcfETlrgDEril-S ilrhq CMGA_MOUSE : 55- 68: mpvsp EclETlqgDEril-S ilrhq CMGA_PIG : 53- 66: mpvsq EcfETlrgDEril-S ilrhq CMGA_RAT : 55- 68: mpvsp EclETlqgDErvl-S ilrhq CMGA_STRCA : 37- 50: lpise EclETlrgDErii-S ilrhq SG1_BOVIN : 241- 254: lqrhp EgqEApgeSEeda-S pevdk SG1_HUMAN : 168- 182: edeee EegENyqkGErgedS seekh SG1_MOUSE : 265- 279: sqege EgeEGeegEEgeedS asevt SG1_MOUSE : 267- 281: egeeg EegEEgeeGEedsaS evtkr SG1_MOUSE : 268- 281: geege EgeEGeegEEdsa-S evtkr SG2_BOVIN : 254- 267: wnpve EkiESqtqEEvrd-S kenad SG2_HUMAN : 255- 268: wnpve EkiESqtqEEvrd-S kenig SG2_MOUSE : 257- 270: wspie EkiETqtqEEvrd-S kente SG2_RAT : 257- 270: wspme EkiETqtqEEvrd-S kente K 11: 19.3128 14( 13) R-x-[ADGNPST]-E-x(2,3)-E-x(0,1)-E-[ENQS] Occurences: 14(13) CMGA_BOVIN : 220- 228: saeqg RqTEre-E-EE ekwee CMGA_BOVIN : 220- 229: saeqg RqTEreeE-EE kweea CMGA_BOVIN : 220- 229: saeqg RqTEre-EeEE kweea CMGA_BOVIN : 419- 428: egsan RrPEdq-ElES lsaie CMGA_HUMAN : 427- 436: egsan RrPEdq-ElES lsaie CMGA_MOUSE : 433- 442: egsan RrAEdq-ElES lsaie CMGA_PIG : 416- 425: egsan RrPEdq-ElES lsaie CMGA_RAT : 436- 445: egsan RrAEdq-ElES lsaie CMGA_STRCA : 77- 86: rtqqq RrTEdq-ElES laaie SG1_BOVIN : 349- 359: hqalr RpSEeslEqEN krhgl SG1_HUMAN : 162- 172: seksq ReDEeeeEgEN yqkge SG1_MOUSE : 398- 406: estan RhGEet-E-EE rsyeg SG2_BOVIN : 180- 188: dnpfk RtNEiv-E-EQ ytpqn SG2_HUMAN : 181- 189: dnpfk RtNEiv-E-EQ ytpqs SG2_MOUSE : 183- 191: enpfk RtNEiv-E-EQ ytpqs SG2_RAT : 183- 191: enpfk RtNEiv-E-EQ ytpqs L 12: 18.8639 13( 13) L-x(0,1)-E-x-[LV]-A-x(2,3)-L Occurences: 13(13) CMGA_BOVIN : 436- 443: aieae L-EkVAhq-L eelrr CMGA_HUMAN : 444- 451: aieae L-EkVAhq-L qalrr CMGA_MOUSE : 450- 457: aieae L-EkVAhq-L qalrr CMGA_PIG : 433- 440: aieae L-EkVApq-L qslrr CMGA_RAT : 453- 460: aieae L-EkVAhq-L qalrr CMGA_STRCA : 94- 101: aieae L-EsVAhs-L qal SG1_BOVIN : 623- 631: eeeke L-EnLAamdL elqki SG1_HUMAN : 656- 664: dekke L-EnLAamdL elqki SG1_MOUSE : 656- 664: eekke L-EnLAamdL elqki SG2_BOVIN : 500- 508: dkdqe LgEyLArm-L vkype SG2_HUMAN : 504- 512: dkdqe LgEyLArm-L vkype SG2_MOUSE : 504- 512: lndqe LgEyLArm-L vkype SG2_RAT : 506- 514: dkdqe LgEyLArm-L vkype M 13: 18.3544 13( 13) L-x-[AEQ]-x-E-x(1,2)-E-x(3,4)-A Occurences: 13(13) CMGA_BOVIN : 429- 440: qeles LsAiEa-ElekvA hqlee CMGA_HUMAN : 437- 448: qeles LsAiEa-ElekvA hqlqa CMGA_MOUSE : 443- 454: qeles LsAiEa-ElekvA hqlqa CMGA_PIG : 426- 437: qeles LsAiEa-ElekvA pqlqs CMGA_RAT : 446- 457: qeles LsAiEa-ElekvA hqlqa CMGA_STRCA : 87- 98: qeles LaAiEa-ElesvA hslqa SG1_BOVIN : 615- 627: agqgv LtEeEekElenlA amdle SG1_HUMAN : 648- 660: adqtv LtEdEkkElenlA amdle SG1_MOUSE : 648- 660: adqrv LtAeEkkElenlA amdle SG2_BOVIN : 117- 127: iiaea LrQaEn-Epqs-A pkenk SG2_HUMAN : 118- 128: iilea LrQaEn-Epqs-A pkenk SG2_MOUSE : 120- 130: iilea LrQaEn-Epps-A pkenk SG2_RAT : 120- 130: iilea LrQaEn-Epps-A lkenk N 14: 18.3462 22( 13) E-x(4,5)-E-x(1,2)-A-[AEN]-x(3)-E Occurences: 22(13) CMGA_BOVIN : 408- 422: vrgyp EekkeeEgsANrrpE dqele CMGA_BOVIN : 409- 422: rgype Ekkee-EgsANrrpE dqele CMGA_HUMAN : 228- 242: wqakr EeeeeeEeeAEageE avpee CMGA_HUMAN : 229- 242: qakre EeeeeeEe-AEageE avpee CMGA_HUMAN : 229- 242: qakre Eeeee-EeeAEageE avpee CMGA_HUMAN : 230- 242: akree Eeeee-Ee-AEageE avpee CMGA_HUMAN : 417- 430: rgypq Ekkee-EgsANrrpE dqele CMGA_MOUSE : 422- 436: arsdf EekkeeEgsANrraE dqele CMGA_MOUSE : 423- 436: rsdfe Ekkee-EgsANrraE dqele CMGA_PIG : 405- 419: vrxyl EekkeeEgsANrrpE dqele CMGA_PIG : 406- 419: rxyle Ekkee-EgsANrrpE dqele CMGA_RAT : 425- 439: argdf EekkeeEgsANrraE dqele CMGA_RAT : 426- 439: rgdfe Ekkee-EgsANrraE dqele CMGA_STRCA : 80- 93: qqrrt Edqel-EslAAieaE lesva SG1_BOVIN : 618- 632: gvlte EeekelEnlAAmdlE lqkia SG1_BOVIN : 619- 632: vltee Eekel-EnlAAmdlE lqkia SG1_HUMAN : 652- 665: vlted Ekkel-EnlAAmdlE lqkia SG1_MOUSE : 651- 665: rvlta EekkelEnlAAmdlE lqkia SG1_MOUSE : 652- 665: vltae Ekkel-EnlAAmdlE lqkia SG2_BOVIN : 591- 603: lvkvl Eylnq-Ek-AEkgrE hiakr SG2_HUMAN : 595- 607: lmkvl Eylnq-Ek-AEkgrE hiakr SG2_MOUSE : 595- 607: llkvl Eylnq-Eq-AEqgrE hlakr SG2_RAT : 597- 609: llkvl Eylnq-Eq-AEqgrE hlakr O 15: 17.8932 19( 13) R-x(2,3)-E-x(2)-E-x(0,1)-E-[ENQS] Occurences: 19(13) CMGA_BOVIN : 220- 228: saeqg Rqt-EreE-EE ekwee CMGA_BOVIN : 220- 229: saeqg Rqt-EreEeEE kweea CMGA_BOVIN : 349- 358: ltaek RlegEeeE-EE dpdrs CMGA_BOVIN : 419- 428: egsan Rrp-EdqElES lsaie CMGA_HUMAN : 227- 235: gwqak Ree-EeeE-EE eaeag CMGA_HUMAN : 227- 236: gwqak ReeeEeeE-EE aeage CMGA_HUMAN : 227- 236: gwqak Ree-EeeEeEE aeage CMGA_HUMAN : 427- 436: egsan Rrp-EdqElES lsaie CMGA_MOUSE : 433- 442: egsan Rra-EdqElES lsaie CMGA_PIG : 343- 352: ltaek RlqgEeeE-EE eeedp CMGA_PIG : 343- 353: ltaek RlqgEeeEeEE eedpd CMGA_PIG : 416- 425: egsan Rrp-EdqElES lsaie CMGA_RAT : 340- 349: gqele RkqqEeeE-EE erlsr CMGA_RAT : 340- 350: gqele RkqqEeeEeEE rlsre CMGA_RAT : 436- 445: egsan Rra-EdqElES lsaie CMGA_STRCA : 77- 86: rtqqq Rrt-EdqElES laaie SG1_BOVIN : 349- 359: hqalr RpseEslEqEN krhgl SG1_HUMAN : 162- 172: seksq RedeEeeEgEN yqkge SG1_HUMAN : 258- 268: skgqp RsqeEseEgEE datse SG1_MOUSE : 398- 406: estan Rhg-EetE-EE rsyeg SG2_BOVIN : 180- 188: dnpfk Rtn-EivE-EQ ytpqn SG2_HUMAN : 181- 189: dnpfk Rtn-EivE-EQ ytpqs SG2_MOUSE : 183- 191: enpfk Rtn-EivE-EQ ytpqs SG2_RAT : 183- 191: enpfk Rtn-EivE-EQ ytpqs P 16: 16.1802 14( 13) D-x-E-L-x(3,4)-A Occurences: 14(13) CMGA_BOVIN : 423- 431: nrrpe DqELeslsA ieael CMGA_HUMAN : 431- 439: nrrpe DqELeslsA ieael CMGA_MOUSE : 437- 445: nrrae DqELeslsA ieael CMGA_PIG : 420- 428: nrrpe DqELeslsA ieael CMGA_RAT : 440- 448: nrrae DqELeslsA ieael CMGA_STRCA : 81- 88: qrrte DqELesl-A aieae CMGA_STRCA : 81- 89: qrrte DqELeslaA ieael SG1_BOVIN : 630- 637: nlaam DlELqki-A ekfsg SG1_HUMAN : 663- 670: nlaam DlELqki-A ekfsq SG1_MOUSE : 389- 396: krnhp DsELest-A nrhge SG1_MOUSE : 663- 670: nlaam DlELqki-A ekfsq SG2_BOVIN : 497- 505: nlndk DqELgeylA rmlvk SG2_HUMAN : 501- 509: nlndk DqELgeylA rmlvk SG2_MOUSE : 501- 509: yenln DqELgeylA rmlvk SG2_RAT : 503- 511: nlndk DqELgeylA rmlvk Q 17: 15.6802 13( 13) L-x(0,1)-E-x(2,3)-A-x(2)-L Occurences: 13(13) CMGA_BOVIN : 436- 443: aieae L-Ekv-AhqL eelrr CMGA_HUMAN : 444- 451: aieae L-Ekv-AhqL qalrr CMGA_MOUSE : 450- 457: aieae L-Ekv-AhqL qalrr CMGA_PIG : 433- 440: aieae L-Ekv-ApqL qslrr CMGA_RAT : 453- 460: aieae L-Ekv-AhqL qalrr CMGA_STRCA : 94- 101: aieae L-Esv-AhsL qal SG1_BOVIN : 623- 631: eeeke L-EnlaAmdL elqki SG1_HUMAN : 656- 664: dekke L-EnlaAmdL elqki SG1_MOUSE : 656- 664: eekke L-EnlaAmdL elqki SG2_BOVIN : 500- 508: dkdqe LgEyl-ArmL vkype SG2_HUMAN : 504- 512: dkdqe LgEyl-ArmL vkype SG2_MOUSE : 504- 512: lndqe LgEyl-ArmL vkype SG2_RAT : 506- 514: dkdqe LgEyl-ArmL vkype R 18: 15.6802 13( 13) R-x(0,1)-R-x(1,2)-E-x-Q Occurences: 13(13) CMGA_BOVIN : 419- 424: egsan R-Rp-EdQ elesl CMGA_HUMAN : 427- 432: egsan R-Rp-EdQ elesl CMGA_MOUSE : 433- 438: egsan R-Ra-EdQ elesl CMGA_PIG : 416- 421: egsan R-Rp-EdQ elesl CMGA_RAT : 436- 441: egsan R-Ra-EdQ elesl CMGA_STRCA : 77- 82: rtqqq R-Rt-EdQ elesl SG1_BOVIN : 339- 345: arfgg RgRg-EhQ alrrp SG1_HUMAN : 131- 138: ggghs ReRadEpQ wslyp SG1_MOUSE : 372- 379: edrap RpRseEsQ ereyk SG2_BOVIN : 215- 222: pnsqk ReRadEeQ klytd SG2_HUMAN : 216- 223: pnnqk ReRmdEeQ klytd SG2_MOUSE : 218- 225: psnqk ReRvdEeQ klytd SG2_RAT : 218- 225: psnqk ReRvdEeQ klytd S 19: 15.6802 13( 13) R-x(2)-E-x(1,2)-Q-x(1,2)-L Occurences: 13(13) CMGA_BOVIN : 419- 426: egsan RrpEd-Qe-L eslsa CMGA_HUMAN : 427- 434: egsan RrpEd-Qe-L eslsa CMGA_MOUSE : 433- 440: egsan RraEd-Qe-L eslsa CMGA_PIG : 416- 423: egsan RrpEd-Qe-L eslsa CMGA_RAT : 436- 443: egsan RraEd-Qe-L eslsa CMGA_STRCA : 77- 84: rtqqq RrtEd-Qe-L eslaa SG1_BOVIN : 570- 578: krqyd RvaEldQl-L hyrkk SG1_HUMAN : 133- 141: ghsre RadEp-QwsL ypsds SG1_MOUSE : 242- 250: sgeet RrqEkpQe-L tdqdq SG2_BOVIN : 217- 224: sqkre RadEe-Qk-L ytdde SG2_HUMAN : 218- 225: nqkre RmdEe-Qk-L ytdde SG2_MOUSE : 220- 227: nqkre RvdEe-Qk-L ytdde SG2_RAT : 220- 227: nqkre RvdEe-Qk-L ytdde T 20: 15.6802 18( 13) R-x(2)-E-x(2,3)-E-x(0,1)-E Occurences: 18(13) CMGA_BOVIN : 220- 227: saeqg RqtEre-E-E eekwe CMGA_BOVIN : 220- 228: saeqg RqtEreeE-E ekwee CMGA_BOVIN : 220- 228: saeqg RqtEre-EeE ekwee CMGA_BOVIN : 220- 229: saeqg RqtEreeEeE kweea CMGA_BOVIN : 419- 427: egsan RrpEdq-ElE slsai CMGA_HUMAN : 227- 234: gwqak ReeEee-E-E eeaea CMGA_HUMAN : 227- 235: gwqak ReeEeeeE-E eaeag CMGA_HUMAN : 227- 235: gwqak ReeEee-EeE eaeag CMGA_HUMAN : 227- 236: gwqak ReeEeeeEeE aeage CMGA_HUMAN : 427- 435: egsan RrpEdq-ElE slsai CMGA_MOUSE : 333- 341: qggkg RelEhkqE-E eeeee CMGA_MOUSE : 333- 342: qggkg RelEhkqEeE eeeee CMGA_MOUSE : 433- 441: egsan RraEdq-ElE slsai CMGA_PIG : 416- 424: egsan RrpEdq-ElE slsai CMGA_RAT : 436- 444: egsan RraEdq-ElE slsai CMGA_STRCA : 77- 85: rtqqq RrtEdq-ElE slaai SG1_BOVIN : 349- 358: hqalr RpsEeslEqE nkrhg SG1_HUMAN : 162- 169: seksq RedEee-E-E genyq SG1_HUMAN : 162- 171: seksq RedEeeeEgE nyqkg SG1_HUMAN : 258- 265: skgqp RsqEes-E-E geeda SG1_HUMAN : 258- 267: skgqp RsqEeseEgE edats SG1_MOUSE : 374- 382: raprp RseEsq-ErE ykrnh SG1_MOUSE : 398- 405: estan RhgEet-E-E ersye SG1_MOUSE : 398- 406: estan RhgEeteE-E rsyeg SG1_MOUSE : 398- 406: estan RhgEet-EeE rsyeg SG2_BOVIN : 180- 187: dnpfk RtnEiv-E-E qytpq SG2_HUMAN : 181- 188: dnpfk RtnEiv-E-E qytpq SG2_MOUSE : 183- 190: enpfk RtnEiv-E-E qytpq SG2_RAT : 183- 190: enpfk RtnEiv-E-E qytpq Number of patterns evaluated by Pratt:4391 Total running time: 5 seconds