------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 23 sequences from file GRAM_NEG_PORIN PATTERN CONSERVATION: CM: min Nr of Seqs to Match 23 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GRAM_NEG_PORIN.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: NMPC_ECOLI 365 NMPC_SALTY 282 OMA1_NEIGO 326 OMA1_NEIME 393 OMA2_NEIME 387 OMB1_NEIGO 348 OMB1_NEIME 331 OMB2_NEIGO 348 OMB2_NEIME 331 OMB3_NEIME 331 OMB4_NEIME 331 OMB_NEILA 337 OMB_NEISI 357 OMPC_ECOLI 367 OMPC_SALTI 378 OMPF_ECOLI 362 OMPF_SALTY 363 PHOE_CITFR 351 PHOE_ECOLI 351 PHOE_KLEOX 349 PHOE_KLEPN 351 PHOE_SALTY 350 PORI_BPPA2 365 Pratt run started at Thu Feb 6 19:42:19 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 24.0203 23( 23) Y-x(3,5)-G-x(2)-Y-x-F-x-K-x(5)-V 2: 20.8503 23( 23) G-x(2)-Y-x-F-x-K-x(5)-V 3: 20.3503 23( 23) Y-x(4,5)-G-x(2)-Y-D-x(4)-T 4: 18.8503 23( 23) Y-x(0,2)-D-F-x(2)-R-x(1,3)-S 5: 18.8503 30( 23) A-x(1,3)-Y-x(0,2)-D-F-x(2)-R 6: 18.8503 26( 23) V-x(1,3)-Y-x(0,2)-D-F-x(2)-R 7: 16.6802 23( 23) Y-x-F-x-K-x(5)-V 8: 16.6802 23( 23) G-x(2)-Y-D-x(4)-T 9: 16.1802 35( 23) Y-x(0,1)-F-x-K-x(5)-V 10: 16.1802 23( 23) R-x(1,2)-G-x(4)-R-x(5)-G 11: 15.6802 23( 23) D-F-x(2)-R-x(1,3)-S 12: 15.6802 23( 23) D-x(1,2)-P-x-F-x(0,1)-G 13: 15.6802 23( 23) G-x(2,3)-Y-x(1,2)-N-x-G 14: 15.1802 24( 23) Y-x(0,1)-Q-x(3)-G-x(3,5)-S 15: 15.1802 23( 23) Q-x(4)-V-x(1,2)-Y-x(0,2)-D 16: 15.1802 24( 23) A-x(5)-G-x(1,2)-K-x(0,2)-A 17: 15.1802 30( 23) G-x(0,2)-D-x(0,1)-G-x-G 18: 15.1802 34( 23) F-x(0,1)-G-L-x(2,4)-G 19: 15.1802 26( 23) F-x(1,2)-G-L-x(2,4)-G 20: 15.1802 23( 23) Y-x(1,2)-N-x-G-x(2,4)-Y Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 41.4051 23( 23) Y-x(3,5)-G-[ALV]-[DET]-Y-x-F-x-K-[NR]-x-[NS]-[ATV]-x-V-[DS] B 2: 38.8077 23( 23) Y-x(3,5)-G-x-[DET]-Y-x-F-x-K-[NR]-x-[NS]-[ATV]-x-V-[DS] C 3: 38.2351 23( 23) G-[ALV]-[DET]-Y-x-F-x-K-[NR]-x-[NS]-[ATV]-x-V-[DS] D 4: 36.2160 23( 23) Y-x(3,5)-G-x(2)-Y-x-F-x-K-[NR]-x-[NS]-[ATV]-x-V-[DS] E 5: 35.8015 30( 23) A-x(1,3)-Y-x(0,2)-D-F-[GS]-x-R-[PT]-[AS]-[AILV]-x(4)-[AGS]-x-[AGL] F 6: 35.8015 26( 23) V-x(1,3)-Y-x(0,2)-D-F-[GS]-x-R-[PT]-[AS]-[AILV]-x(4)-[AGS]-x-[AGL] G 7: 31.9875 23( 23) Y-x(4,5)-G-[AIV]-x-Y-D-x(4)-T-[DS]-x(2)-[PV]-x(2)-[AGS] H 8: 28.8759 23( 23) Y-x-F-x-K-[NR]-x-[NS]-[ATV]-x-V-[DS] I 9: 28.3759 35( 23) Y-x(0,1)-F-x-K-[NR]-x-[NS]-[ATV]-x-V-[DS] J 10: 28.3174 23( 23) G-[AIV]-x-Y-D-x(4)-T-[DS]-x(2)-[PV]-x(2)-[AGS] K 11: 26.8284 23( 23) R-x(1,2)-G-x-[ALV]-x(2)-R-x-[NST]-x(2)-[FH]-G-[FILV] L 12: 26.5329 23( 23) Y-x(0,2)-D-F-[GS]-x-R-x(1,3)-S-x-[AGILV]-x(3)-[AGS] M 13: 23.3629 23( 23) D-F-[GS]-x-R-x(1,3)-S-x-[AGILV]-x(3)-[AGS] N 14: 22.9761 23( 23) A-[ADEQT]-x(4)-G-x(1,2)-K-x(0,2)-A-[GN]-[DNV] O 15: 20.6123 25( 23) G-x(0,2)-D-x(0,1)-G-x-G-x(4)-[FWY]-x(3)-[EGQ] P 16: 17.8183 23( 23) Y-x(1,2)-N-x-G-x(2,4)-Y-[ADG] Q 17: 17.8137 24( 23) Y-x(0,1)-Q-[FIV]-x(2)-G-x(3,5)-S R 18: 17.5679 23( 23) G-x(2,3)-Y-x(1,2)-N-x-G-x(3)-[DNQRS] S 19: 17.5477 23( 23) D-x(1,2)-P-x-F-x(0,1)-G-x(3)-[AGSTV] T 20: 17.3636 32( 23) F-x(0,1)-G-L-x(2,4)-G-x(3)-[AGSV] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 41.4051 23( 23) Y-x(3,5)-G-[ALV]-[DET]-Y-x-F-x-K-[NR]-x-[NS]-[ATV]-x-V-[DS] Occurences: 23(23) NMPC_ECOLI : 316- 334: qdlvk Yvdv--GATYyFkKNmSTfVD ykinl NMPC_SALTY : 233- 251: qdlve Yidv--GATYyFnKNmSTfVD ykinl OMA1_NEIGO : 280- 300: dndnt YdqvvvGAEYdFsKRtSAlVS agwlq OMA1_NEIME : 346- 366: gents YdqiiaGVDYdFsKRtSAiVS gawlk OMA2_NEIME : 340- 360: gents YdqiiaGVDYdFsKRtSAiVS gawlk OMB1_NEIGO : 302- 322: dhdnt YdqvvvGAEYdFsKRtSAlVS agwlq OMB1_NEIME : 285- 305: nynnd YdqvvvGAEYdFsKRtSAlVS agwlq OMB2_NEIGO : 302- 322: nhdnt YdqvvvGAEYdFsKRtSAlVS agwlq OMB2_NEIME : 285- 305: dlsnd YdqvvvGAEYdFsKRtSAlVS agwlq OMB3_NEIME : 285- 305: dytnd YdqvvvGAEYdFsKRtSAlVS agwlq OMB4_NEIME : 285- 305: digne YdqvvvGAEYdFsKRtSAlVS agwlq OMB_NEILA : 291- 311: dgdnr YdqvvvGAEYdFsKRtSAlVS agwlq OMB_NEISI : 311- 331: qgnsq YnqvivGADYdFsKRtSAlVS agwlk OMPC_ECOLI : 318- 336: edilk Yvdv--GATYyFnKNmSTyVD ykinl OMPC_SALTI : 329- 347: qdivk Yvdv--GATYyFnKNmSTyVD ykinl OMPF_ECOLI : 316- 334: vdlvn Yfev--GATYyFnKNmSTyVD yiinq OMPF_SALTY : 315- 333: adlak Yiqa--GATYyFnKNmNVwVD yrfnl PHOE_CITFR : 305- 323: edlvn Yidv--GATYyFnKNmSAfVD ykinq PHOE_ECOLI : 305- 323: edlvn Yidv--GATYyFnKNmSAfVD ykinq PHOE_KLEOX : 303- 321: edlvn Yidv--GVTYyFnKNmNAfVD ykinq PHOE_KLEPN : 305- 323: edlvn Yidv--GLTYyFnKNmNAfVD ykinq PHOE_SALTY : 304- 322: edlvn Yidv--GATYyFnKNmSAfVD ykinq PORI_BPPA2 : 316- 334: qdlvk Yvdv--GATYyFnKNmSTfVD ykinl B 2: 38.8077 23( 23) Y-x(3,5)-G-x-[DET]-Y-x-F-x-K-[NR]-x-[NS]-[ATV]-x-V-[DS] Occurences: 23(23) NMPC_ECOLI : 316- 334: qdlvk Yvdv--GaTYyFkKNmSTfVD ykinl NMPC_SALTY : 233- 251: qdlve Yidv--GaTYyFnKNmSTfVD ykinl OMA1_NEIGO : 280- 300: dndnt YdqvvvGaEYdFsKRtSAlVS agwlq OMA1_NEIME : 346- 366: gents YdqiiaGvDYdFsKRtSAiVS gawlk OMA2_NEIME : 340- 360: gents YdqiiaGvDYdFsKRtSAiVS gawlk OMB1_NEIGO : 302- 322: dhdnt YdqvvvGaEYdFsKRtSAlVS agwlq OMB1_NEIME : 285- 305: nynnd YdqvvvGaEYdFsKRtSAlVS agwlq OMB2_NEIGO : 302- 322: nhdnt YdqvvvGaEYdFsKRtSAlVS agwlq OMB2_NEIME : 285- 305: dlsnd YdqvvvGaEYdFsKRtSAlVS agwlq OMB3_NEIME : 285- 305: dytnd YdqvvvGaEYdFsKRtSAlVS agwlq OMB4_NEIME : 285- 305: digne YdqvvvGaEYdFsKRtSAlVS agwlq OMB_NEILA : 291- 311: dgdnr YdqvvvGaEYdFsKRtSAlVS agwlq OMB_NEISI : 311- 331: qgnsq YnqvivGaDYdFsKRtSAlVS agwlk OMPC_ECOLI : 318- 336: edilk Yvdv--GaTYyFnKNmSTyVD ykinl OMPC_SALTI : 329- 347: qdivk Yvdv--GaTYyFnKNmSTyVD ykinl OMPF_ECOLI : 316- 334: vdlvn Yfev--GaTYyFnKNmSTyVD yiinq OMPF_SALTY : 315- 333: adlak Yiqa--GaTYyFnKNmNVwVD yrfnl PHOE_CITFR : 305- 323: edlvn Yidv--GaTYyFnKNmSAfVD ykinq PHOE_ECOLI : 305- 323: edlvn Yidv--GaTYyFnKNmSAfVD ykinq PHOE_KLEOX : 303- 321: edlvn Yidv--GvTYyFnKNmNAfVD ykinq PHOE_KLEPN : 305- 323: edlvn Yidv--GlTYyFnKNmNAfVD ykinq PHOE_SALTY : 304- 322: edlvn Yidv--GaTYyFnKNmSAfVD ykinq PORI_BPPA2 : 316- 334: qdlvk Yvdv--GaTYyFnKNmSTfVD ykinl C 3: 38.2351 23( 23) G-[ALV]-[DET]-Y-x-F-x-K-[NR]-x-[NS]-[ATV]-x-V-[DS] Occurences: 23(23) NMPC_ECOLI : 320- 334: kyvdv GATYyFkKNmSTfVD ykinl NMPC_SALTY : 237- 251: eyidv GATYyFnKNmSTfVD ykinl OMA1_NEIGO : 286- 300: dqvvv GAEYdFsKRtSAlVS agwlq OMA1_NEIME : 352- 366: dqiia GVDYdFsKRtSAiVS gawlk OMA2_NEIME : 346- 360: dqiia GVDYdFsKRtSAiVS gawlk OMB1_NEIGO : 308- 322: dqvvv GAEYdFsKRtSAlVS agwlq OMB1_NEIME : 291- 305: dqvvv GAEYdFsKRtSAlVS agwlq OMB2_NEIGO : 308- 322: dqvvv GAEYdFsKRtSAlVS agwlq OMB2_NEIME : 291- 305: dqvvv GAEYdFsKRtSAlVS agwlq OMB3_NEIME : 291- 305: dqvvv GAEYdFsKRtSAlVS agwlq OMB4_NEIME : 291- 305: dqvvv GAEYdFsKRtSAlVS agwlq OMB_NEILA : 297- 311: dqvvv GAEYdFsKRtSAlVS agwlq OMB_NEISI : 317- 331: nqviv GADYdFsKRtSAlVS agwlk OMPC_ECOLI : 322- 336: kyvdv GATYyFnKNmSTyVD ykinl OMPC_SALTI : 333- 347: kyvdv GATYyFnKNmSTyVD ykinl OMPF_ECOLI : 320- 334: nyfev GATYyFnKNmSTyVD yiinq OMPF_SALTY : 319- 333: kyiqa GATYyFnKNmNVwVD yrfnl PHOE_CITFR : 309- 323: nyidv GATYyFnKNmSAfVD ykinq PHOE_ECOLI : 309- 323: nyidv GATYyFnKNmSAfVD ykinq PHOE_KLEOX : 307- 321: nyidv GVTYyFnKNmNAfVD ykinq PHOE_KLEPN : 309- 323: nyidv GLTYyFnKNmNAfVD ykinq PHOE_SALTY : 308- 322: nyidv GATYyFnKNmSAfVD ykinq PORI_BPPA2 : 320- 334: kyvdv GATYyFnKNmSTfVD ykinl D 4: 36.2160 23( 23) Y-x(3,5)-G-x(2)-Y-x-F-x-K-[NR]-x-[NS]-[ATV]-x-V-[DS] Occurences: 23(23) NMPC_ECOLI : 316- 334: qdlvk Yvdv--GatYyFkKNmSTfVD ykinl NMPC_SALTY : 233- 251: qdlve Yidv--GatYyFnKNmSTfVD ykinl OMA1_NEIGO : 280- 300: dndnt YdqvvvGaeYdFsKRtSAlVS agwlq OMA1_NEIME : 346- 366: gents YdqiiaGvdYdFsKRtSAiVS gawlk OMA2_NEIME : 340- 360: gents YdqiiaGvdYdFsKRtSAiVS gawlk OMB1_NEIGO : 302- 322: dhdnt YdqvvvGaeYdFsKRtSAlVS agwlq OMB1_NEIME : 285- 305: nynnd YdqvvvGaeYdFsKRtSAlVS agwlq OMB2_NEIGO : 302- 322: nhdnt YdqvvvGaeYdFsKRtSAlVS agwlq OMB2_NEIME : 285- 305: dlsnd YdqvvvGaeYdFsKRtSAlVS agwlq OMB3_NEIME : 285- 305: dytnd YdqvvvGaeYdFsKRtSAlVS agwlq OMB4_NEIME : 285- 305: digne YdqvvvGaeYdFsKRtSAlVS agwlq OMB_NEILA : 291- 311: dgdnr YdqvvvGaeYdFsKRtSAlVS agwlq OMB_NEISI : 311- 331: qgnsq YnqvivGadYdFsKRtSAlVS agwlk OMPC_ECOLI : 318- 336: edilk Yvdv--GatYyFnKNmSTyVD ykinl OMPC_SALTI : 329- 347: qdivk Yvdv--GatYyFnKNmSTyVD ykinl OMPF_ECOLI : 316- 334: vdlvn Yfev--GatYyFnKNmSTyVD yiinq OMPF_SALTY : 315- 333: adlak Yiqa--GatYyFnKNmNVwVD yrfnl PHOE_CITFR : 305- 323: edlvn Yidv--GatYyFnKNmSAfVD ykinq PHOE_ECOLI : 305- 323: edlvn Yidv--GatYyFnKNmSAfVD ykinq PHOE_KLEOX : 303- 321: edlvn Yidv--GvtYyFnKNmNAfVD ykinq PHOE_KLEPN : 305- 323: edlvn Yidv--GltYyFnKNmNAfVD ykinq PHOE_SALTY : 304- 322: edlvn Yidv--GatYyFnKNmSAfVD ykinq PORI_BPPA2 : 316- 334: qdlvk Yvdv--GatYyFnKNmSTfVD ykinl E 5: 35.8015 30( 23) A-x(1,3)-Y-x(0,2)-D-F-[GS]-x-R-[PT]-[AS]-[AILV]-x(4)-[AGS]-x-[AGL] Occurences: 30(23) NMPC_ECOLI : 281- 302: aqnfe AvaqYqfDFGlRPSVaylqSkG kdlgv NMPC_ECOLI : 283- 302: nfeav Aq--YqfDFGlRPSVaylqSkG kdlgv NMPC_SALTY : 198- 219: tqnfe AvaqYqfDFGlRPSIaylkSkG knlgt NMPC_SALTY : 200- 219: nfeav Aq--YqfDFGlRPSIaylkSkG knlgt OMA1_NEIGO : 287- 304: qvvvg Ae--Y--DFSkRTSAlvsaGwL qrgkg OMA1_NEIME : 351- 370: ydqii AgvdY--DFSkRTSAivsgAwL krntg OMA2_NEIME : 345- 364: ydqii AgvdY--DFSkRTSAivsgAwL krntg OMB1_NEIGO : 309- 326: qvvvg Ae--Y--DFSkRTSAlvsaGwL qegkg OMB1_NEIME : 292- 309: qvvvg Ae--Y--DFSkRTSAlvsaGwL qegkg OMB2_NEIGO : 309- 326: qvvvg Ae--Y--DFSkRTSAlvsaGwL qggkg OMB2_NEIME : 292- 309: qvvvg Ae--Y--DFSkRTSAlvsaGwL qegkg OMB3_NEIME : 292- 309: qvvvg Ae--Y--DFSkRTSAlvsaGwL qegkg OMB4_NEIME : 292- 309: qvvvg Ae--Y--DFSkRTSAlvsaGwL qegkg OMB_NEILA : 298- 315: qvvvg Ae--Y--DFSkRTSAlvsaGwL qegkg OMB_NEISI : 318- 335: qvivg Ad--Y--DFSkRTSAlvsaGwL kegkg OMPC_ECOLI : 282- 303: aqnfe AvaqYqfDFGlRPSLaylqSkG knlgr OMPC_ECOLI : 284- 303: nfeav Aq--YqfDFGlRPSLaylqSkG knlgr OMPC_SALTI : 291- 310: nfevv Aq--YqfDFGlRPSVaylqSkG kdisn OMPF_ECOLI : 283- 302: dvllv Aq--YqfDFGlRPSIaytkSkA kdveg OMPF_SALTY : 281- 300: nlevv Aq--YqfDFGlRPAIsyvqSkG kqlng PHOE_CITFR : 270- 291: tqnfe AvvqYqfDFGlRPSLgyvlSkG kdieg PHOE_ECOLI : 270- 291: tqnfe AvaqYqfDFGlRPSLgyvlSkG kdieg PHOE_ECOLI : 272- 291: nfeav Aq--YqfDFGlRPSLgyvlSkG kdieg PHOE_KLEOX : 268- 289: aqnfe AvaqYqfDFGlRPSLgyvlSkG kdieg PHOE_KLEOX : 270- 289: nfeav Aq--YqfDFGlRPSLgyvlSkG kdieg PHOE_KLEPN : 270- 291: aqnfe AvaqYqfDFGlRPSLgyvlSkG kdieg PHOE_KLEPN : 272- 291: nfeav Aq--YqfDFGlRPSLgyvlSkG kdieg PHOE_SALTY : 269- 290: tqnfe AviqYqfDFGlRPSLgyvlSkG kdieg PORI_BPPA2 : 281- 302: aqnfe AvaqYqfDFGlRPSVaylqSkG kdlgv PORI_BPPA2 : 283- 302: nfeav Aq--YqfDFGlRPSVaylqSkG kdlgv F 6: 35.8015 26( 23) V-x(1,3)-Y-x(0,2)-D-F-[GS]-x-R-[PT]-[AS]-[AILV]-x(4)-[AGS]-x-[AGL] Occurences: 26(23) NMPC_ECOLI : 282- 302: qnfea Vaq-YqfDFGlRPSVaylqSkG kdlgv NMPC_SALTY : 199- 219: qnfea Vaq-YqfDFGlRPSIaylkSkG knlgt OMA1_NEIGO : 285- 304: ydqvv VgaeY--DFSkRTSAlvsaGwL qrgkg OMA1_NEIME : 353- 370: qiiag Vd--Y--DFSkRTSAivsgAwL krntg OMA2_NEIME : 347- 364: qiiag Vd--Y--DFSkRTSAivsgAwL krntg OMB1_NEIGO : 307- 326: ydqvv VgaeY--DFSkRTSAlvsaGwL qegkg OMB1_NEIME : 290- 309: ydqvv VgaeY--DFSkRTSAlvsaGwL qegkg OMB2_NEIGO : 307- 326: ydqvv VgaeY--DFSkRTSAlvsaGwL qggkg OMB2_NEIME : 290- 309: ydqvv VgaeY--DFSkRTSAlvsaGwL qegkg OMB3_NEIME : 290- 309: ydqvv VgaeY--DFSkRTSAlvsaGwL qegkg OMB4_NEIME : 290- 309: ydqvv VgaeY--DFSkRTSAlvsaGwL qegkg OMB_NEILA : 296- 315: ydqvv VgaeY--DFSkRTSAlvsaGwL qegkg OMB_NEISI : 316- 335: ynqvi VgadY--DFSkRTSAlvsaGwL kegkg OMPC_ECOLI : 283- 303: qnfea Vaq-YqfDFGlRPSLaylqSkG knlgr OMPC_SALTI : 289- 310: aqnfe VvaqYqfDFGlRPSVaylqSkG kdisn OMPC_SALTI : 290- 310: qnfev Vaq-YqfDFGlRPSVaylqSkG kdisn OMPF_ECOLI : 282- 302: qdvll Vaq-YqfDFGlRPSIaytkSkA kdveg OMPF_SALTY : 279- 300: tqnle VvaqYqfDFGlRPAIsyvqSkG kqlng OMPF_SALTY : 280- 300: qnlev Vaq-YqfDFGlRPAIsyvqSkG kqlng PHOE_CITFR : 271- 291: qnfea Vvq-YqfDFGlRPSLgyvlSkG kdieg PHOE_CITFR : 272- 291: nfeav Vq--YqfDFGlRPSLgyvlSkG kdieg PHOE_ECOLI : 271- 291: qnfea Vaq-YqfDFGlRPSLgyvlSkG kdieg PHOE_KLEOX : 269- 289: qnfea Vaq-YqfDFGlRPSLgyvlSkG kdieg PHOE_KLEPN : 271- 291: qnfea Vaq-YqfDFGlRPSLgyvlSkG kdieg PHOE_SALTY : 270- 290: qnfea Viq-YqfDFGlRPSLgyvlSkG kdieg PORI_BPPA2 : 282- 302: qnfea Vaq-YqfDFGlRPSVaylqSkG kdlgv G 7: 31.9875 23( 23) Y-x(4,5)-G-[AIV]-x-Y-D-x(4)-T-[DS]-x(2)-[PV]-x(2)-[AGS] Occurences: 23(23) NMPC_ECOLI : 115- 136: ygsid Ygrny-GVaYDigawTDvlPefG gdtwt NMPC_SALTY : 34- 55: ygsfd Ygrny-GVaYDigawTDvlPefG gdtwt OMA1_NEIGO : 280- 302: dndnt YdqvvvGAeYDfskrTSalVsaG wlqrg OMA1_NEIME : 346- 368: gents YdqiiaGVdYDfskrTSaiVsgA wlkrn OMA2_NEIME : 340- 362: gents YdqiiaGVdYDfskrTSaiVsgA wlkrn OMB1_NEIGO : 302- 324: dhdnt YdqvvvGAeYDfskrTSalVsaG wlqeg OMB1_NEIME : 285- 307: nynnd YdqvvvGAeYDfskrTSalVsaG wlqeg OMB2_NEIGO : 302- 324: nhdnt YdqvvvGAeYDfskrTSalVsaG wlqgg OMB2_NEIME : 285- 307: dlsnd YdqvvvGAeYDfskrTSalVsaG wlqeg OMB3_NEIME : 285- 307: dytnd YdqvvvGAeYDfskrTSalVsaG wlqeg OMB4_NEIME : 285- 307: digne YdqvvvGAeYDfskrTSalVsaG wlqeg OMB_NEILA : 291- 313: dgdnr YdqvvvGAeYDfskrTSalVsaG wlqeg OMB_NEISI : 311- 333: qgnsq YnqvivGAdYDfskrTSalVsaG wlkeg OMPC_ECOLI : 111- 132: vgsfd Ygrny-GVvYDvtswTDvlPefG gdtyg OMPC_SALTI : 111- 132: agsfd Ygrny-GVtYDvtswTDvlPefG gdtyg OMPF_ECOLI : 120- 141: vgsfd Ygrny-GVvYDalgyTDmlPefG gdtay OMPF_SALTY : 115- 136: vgsid Ygrny-GIvYDvesyTDmaPyfS getwg PHOE_CITFR : 112- 133: lgsfd Ygrnl-GAlYDveawTDmfPefG gdssa PHOE_ECOLI : 112- 133: lgsfd Ygrnl-GAlYDveawTDmfPefG gdssa PHOE_KLEOX : 111- 132: ygsfd Ygrnl-GAlYDveawTDmfPefG gdssa PHOE_KLEPN : 112- 133: ygsfd Ygrnl-GAlYDveawTDmfPefG gdssa PHOE_SALTY : 111- 132: igsfd Ygrnl-GAlYDveawTDmfPefG gdssa PORI_BPPA2 : 115- 136: ygsid Ygrny-GVaYDigawTDvlPefG gdtwt H 8: 28.8759 23( 23) Y-x-F-x-K-[NR]-x-[NS]-[ATV]-x-V-[DS] Occurences: 23(23) NMPC_ECOLI : 323- 334: dvgat YyFkKNmSTfVD ykinl NMPC_SALTY : 240- 251: dvgat YyFnKNmSTfVD ykinl OMA1_NEIGO : 289- 300: vvgae YdFsKRtSAlVS agwlq OMA1_NEIME : 355- 366: iagvd YdFsKRtSAiVS gawlk OMA2_NEIME : 349- 360: iagvd YdFsKRtSAiVS gawlk OMB1_NEIGO : 311- 322: vvgae YdFsKRtSAlVS agwlq OMB1_NEIME : 294- 305: vvgae YdFsKRtSAlVS agwlq OMB2_NEIGO : 311- 322: vvgae YdFsKRtSAlVS agwlq OMB2_NEIME : 294- 305: vvgae YdFsKRtSAlVS agwlq OMB3_NEIME : 294- 305: vvgae YdFsKRtSAlVS agwlq OMB4_NEIME : 294- 305: vvgae YdFsKRtSAlVS agwlq OMB_NEILA : 300- 311: vvgae YdFsKRtSAlVS agwlq OMB_NEISI : 320- 331: ivgad YdFsKRtSAlVS agwlk OMPC_ECOLI : 325- 336: dvgat YyFnKNmSTyVD ykinl OMPC_SALTI : 336- 347: dvgat YyFnKNmSTyVD ykinl OMPF_ECOLI : 323- 334: evgat YyFnKNmSTyVD yiinq OMPF_SALTY : 322- 333: qagat YyFnKNmNVwVD yrfnl PHOE_CITFR : 312- 323: dvgat YyFnKNmSAfVD ykinq PHOE_ECOLI : 312- 323: dvgat YyFnKNmSAfVD ykinq PHOE_KLEOX : 310- 321: dvgvt YyFnKNmNAfVD ykinq PHOE_KLEPN : 312- 323: dvglt YyFnKNmNAfVD ykinq PHOE_SALTY : 311- 322: dvgat YyFnKNmSAfVD ykinq PORI_BPPA2 : 323- 334: dvgat YyFnKNmSTfVD ykinl I 9: 28.3759 35( 23) Y-x(0,1)-F-x-K-[NR]-x-[NS]-[ATV]-x-V-[DS] Occurences: 35(23) NMPC_ECOLI : 323- 334: dvgat YyFkKNmSTfVD ykinl NMPC_ECOLI : 324- 334: vgaty Y-FkKNmSTfVD ykinl NMPC_SALTY : 240- 251: dvgat YyFnKNmSTfVD ykinl NMPC_SALTY : 241- 251: vgaty Y-FnKNmSTfVD ykinl OMA1_NEIGO : 289- 300: vvgae YdFsKRtSAlVS agwlq OMA1_NEIME : 355- 366: iagvd YdFsKRtSAiVS gawlk OMA2_NEIME : 349- 360: iagvd YdFsKRtSAiVS gawlk OMB1_NEIGO : 311- 322: vvgae YdFsKRtSAlVS agwlq OMB1_NEIME : 294- 305: vvgae YdFsKRtSAlVS agwlq OMB2_NEIGO : 311- 322: vvgae YdFsKRtSAlVS agwlq OMB2_NEIME : 294- 305: vvgae YdFsKRtSAlVS agwlq OMB3_NEIME : 294- 305: vvgae YdFsKRtSAlVS agwlq OMB4_NEIME : 294- 305: vvgae YdFsKRtSAlVS agwlq OMB_NEILA : 300- 311: vvgae YdFsKRtSAlVS agwlq OMB_NEISI : 320- 331: ivgad YdFsKRtSAlVS agwlk OMPC_ECOLI : 325- 336: dvgat YyFnKNmSTyVD ykinl OMPC_ECOLI : 326- 336: vgaty Y-FnKNmSTyVD ykinl OMPC_SALTI : 336- 347: dvgat YyFnKNmSTyVD ykinl OMPC_SALTI : 337- 347: vgaty Y-FnKNmSTyVD ykinl OMPF_ECOLI : 323- 334: evgat YyFnKNmSTyVD yiinq OMPF_ECOLI : 324- 334: vgaty Y-FnKNmSTyVD yiinq OMPF_SALTY : 322- 333: qagat YyFnKNmNVwVD yrfnl OMPF_SALTY : 323- 333: agaty Y-FnKNmNVwVD yrfnl PHOE_CITFR : 312- 323: dvgat YyFnKNmSAfVD ykinq PHOE_CITFR : 313- 323: vgaty Y-FnKNmSAfVD ykinq PHOE_ECOLI : 312- 323: dvgat YyFnKNmSAfVD ykinq PHOE_ECOLI : 313- 323: vgaty Y-FnKNmSAfVD ykinq PHOE_KLEOX : 310- 321: dvgvt YyFnKNmNAfVD ykinq PHOE_KLEOX : 311- 321: vgvty Y-FnKNmNAfVD ykinq PHOE_KLEPN : 312- 323: dvglt YyFnKNmNAfVD ykinq PHOE_KLEPN : 313- 323: vglty Y-FnKNmNAfVD ykinq PHOE_SALTY : 311- 322: dvgat YyFnKNmSAfVD ykinq PHOE_SALTY : 312- 322: vgaty Y-FnKNmSAfVD ykinq PORI_BPPA2 : 323- 334: dvgat YyFnKNmSTfVD ykinl PORI_BPPA2 : 324- 334: vgaty Y-FnKNmSTfVD ykinl J 10: 28.3174 23( 23) G-[AIV]-x-Y-D-x(4)-T-[DS]-x(2)-[PV]-x(2)-[AGS] Occurences: 23(23) NMPC_ECOLI : 120- 136: ygrny GVaYDigawTDvlPefG gdtwt NMPC_SALTY : 39- 55: ygrny GVaYDigawTDvlPefG gdtwt OMA1_NEIGO : 286- 302: dqvvv GAeYDfskrTSalVsaG wlqrg OMA1_NEIME : 352- 368: dqiia GVdYDfskrTSaiVsgA wlkrn OMA2_NEIME : 346- 362: dqiia GVdYDfskrTSaiVsgA wlkrn OMB1_NEIGO : 308- 324: dqvvv GAeYDfskrTSalVsaG wlqeg OMB1_NEIME : 291- 307: dqvvv GAeYDfskrTSalVsaG wlqeg OMB2_NEIGO : 308- 324: dqvvv GAeYDfskrTSalVsaG wlqgg OMB2_NEIME : 291- 307: dqvvv GAeYDfskrTSalVsaG wlqeg OMB3_NEIME : 291- 307: dqvvv GAeYDfskrTSalVsaG wlqeg OMB4_NEIME : 291- 307: dqvvv GAeYDfskrTSalVsaG wlqeg OMB_NEILA : 297- 313: dqvvv GAeYDfskrTSalVsaG wlqeg OMB_NEISI : 317- 333: nqviv GAdYDfskrTSalVsaG wlkeg OMPC_ECOLI : 116- 132: ygrny GVvYDvtswTDvlPefG gdtyg OMPC_SALTI : 116- 132: ygrny GVtYDvtswTDvlPefG gdtyg OMPF_ECOLI : 125- 141: ygrny GVvYDalgyTDmlPefG gdtay OMPF_SALTY : 120- 136: ygrny GIvYDvesyTDmaPyfS getwg PHOE_CITFR : 117- 133: ygrnl GAlYDveawTDmfPefG gdssa PHOE_ECOLI : 117- 133: ygrnl GAlYDveawTDmfPefG gdssa PHOE_KLEOX : 116- 132: ygrnl GAlYDveawTDmfPefG gdssa PHOE_KLEPN : 117- 133: ygrnl GAlYDveawTDmfPefG gdssa PHOE_SALTY : 116- 132: ygrnl GAlYDveawTDmfPefG gdssa PORI_BPPA2 : 120- 136: ygrny GVaYDigawTDvlPefG gdtwt K 11: 26.8284 23( 23) R-x(1,2)-G-x-[ALV]-x(2)-R-x-[NST]-x(2)-[FH]-G-[FILV] Occurences: 23(23) NMPC_ECOLI : 150- 165: vfmtq RatGvAtyRnNdfFGL vdgln NMPC_SALTY : 69- 84: vfmtg RttGvAtyRkTdfFGL vegln OMA1_NEIGO : 253- 267: ataay Rf-GnVtpRvSyaHGF kgsvy OMA1_NEIME : 318- 332: atasy Rf-GnAvpRiSyaHGF dlier OMA2_NEIME : 312- 326: atasy Rf-GnAvpRiSyaHGF dlier OMB1_NEIGO : 275- 289: ataay Rf-GnVtpRvSyaHGF kgtvd OMB1_NEIME : 258- 272: atlay Rf-GnVtpRvSyaHGF kgsfd OMB2_NEIGO : 275- 289: ataay Rf-GnVtpRvSyaHGF kgtvd OMB2_NEIME : 258- 272: atlay Rf-GnVtpRvSyaHGF kgsfd OMB3_NEIME : 258- 272: atlay Rf-GnVtpRvSyaHGF rglvd OMB4_NEIME : 258- 272: atlay Rf-GnVtpRvSyaHGF kglvd OMB_NEILA : 264- 278: atvay Rf-GnVtpRvSyaHGF kgtva OMB_NEISI : 283- 297: vtggy Rm-GnVmpRlSyaHGF kaken OMPC_ECOLI : 145- 160: nfmqq RgnGfAtyRnTdfFGL vdgln OMPC_SALTI : 145- 160: nfmqq RgnGyAtyRnTdfFGL vdgld OMPF_ECOLI : 154- 169: dffvg RvgGvAtyRnSnfFGL vdgln OMPF_SALTY : 152- 167: nymts RagGlLtyRnSdfFGL vdgls PHOE_CITFR : 147- 162: nfmtk RasGlAtyRnTdfFGV vdgld PHOE_ECOLI : 147- 162: nfmtk RasGlAtyRnTdfFGV idgln PHOE_KLEOX : 146- 161: nfmtk RasGlAtyRnTdfFGV vdgld PHOE_KLEPN : 147- 162: nfmtk RasGlAtyRnTdfFGL vdgld PHOE_SALTY : 146- 161: nfmtk RasGlAtyRnTdfFGI vdgld PORI_BPPA2 : 150- 165: vfmtg RttGfAtyRnNdfFGL vdgln L 12: 26.5329 23( 23) Y-x(0,2)-D-F-[GS]-x-R-x(1,3)-S-x-[AGILV]-x(3)-[AGS] Occurences: 23(23) NMPC_ECOLI : 285- 300: eavaq YqfDFGlRp--SvAylqS kgkdl NMPC_SALTY : 202- 217: eavaq YqfDFGlRp--SiAylkS kgknl OMA1_NEIGO : 289- 302: vvgae Y--DFSkRt--SaLvsaG wlqrg OMA1_NEIME : 355- 368: iagvd Y--DFSkRt--SaIvsgA wlkrn OMA2_NEIME : 349- 362: iagvd Y--DFSkRt--SaIvsgA wlkrn OMB1_NEIGO : 311- 324: vvgae Y--DFSkRt--SaLvsaG wlqeg OMB1_NEIME : 294- 307: vvgae Y--DFSkRt--SaLvsaG wlqeg OMB2_NEIGO : 311- 324: vvgae Y--DFSkRt--SaLvsaG wlqgg OMB2_NEIME : 294- 307: vvgae Y--DFSkRt--SaLvsaG wlqeg OMB3_NEIME : 294- 307: vvgae Y--DFSkRt--SaLvsaG wlqeg OMB4_NEIME : 294- 307: vvgae Y--DFSkRt--SaLvsaG wlqeg OMB_NEILA : 300- 313: vvgae Y--DFSkRt--SaLvsaG wlqeg OMB_NEISI : 320- 333: ivgad Y--DFSkRt--SaLvsaG wlkeg OMPC_ECOLI : 286- 301: eavaq YqfDFGlRp--SlAylqS kgknl OMPC_SALTI : 293- 308: evvaq YqfDFGlRp--SvAylqS kgkdi OMPF_ECOLI : 285- 300: llvaq YqfDFGlRp--SiAytkS kakdv OMPF_SALTY : 283- 300: evvaq YqfDFGlRpaiSyVqskG kqlng PHOE_CITFR : 274- 289: eavvq YqfDFGlRp--SlGyvlS kgkdi PHOE_ECOLI : 274- 289: eavaq YqfDFGlRp--SlGyvlS kgkdi PHOE_KLEOX : 272- 287: eavaq YqfDFGlRp--SlGyvlS kgkdi PHOE_KLEPN : 274- 289: eavaq YqfDFGlRp--SlGyvlS kgkdi PHOE_SALTY : 273- 288: eaviq YqfDFGlRp--SlGyvlS kgkdi PORI_BPPA2 : 285- 300: eavaq YqfDFGlRp--SvAylqS kgkdl M 13: 23.3629 23( 23) D-F-[GS]-x-R-x(1,3)-S-x-[AGILV]-x(3)-[AGS] Occurences: 23(23) NMPC_ECOLI : 288- 300: aqyqf DFGlRp--SvAylqS kgkdl NMPC_SALTY : 205- 217: aqyqf DFGlRp--SiAylkS kgknl OMA1_NEIGO : 290- 302: vgaey DFSkRt--SaLvsaG wlqrg OMA1_NEIME : 356- 368: agvdy DFSkRt--SaIvsgA wlkrn OMA2_NEIME : 350- 362: agvdy DFSkRt--SaIvsgA wlkrn OMB1_NEIGO : 312- 324: vgaey DFSkRt--SaLvsaG wlqeg OMB1_NEIME : 295- 307: vgaey DFSkRt--SaLvsaG wlqeg OMB2_NEIGO : 312- 324: vgaey DFSkRt--SaLvsaG wlqgg OMB2_NEIME : 295- 307: vgaey DFSkRt--SaLvsaG wlqeg OMB3_NEIME : 295- 307: vgaey DFSkRt--SaLvsaG wlqeg OMB4_NEIME : 295- 307: vgaey DFSkRt--SaLvsaG wlqeg OMB_NEILA : 301- 313: vgaey DFSkRt--SaLvsaG wlqeg OMB_NEISI : 321- 333: vgady DFSkRt--SaLvsaG wlkeg OMPC_ECOLI : 289- 301: aqyqf DFGlRp--SlAylqS kgknl OMPC_SALTI : 296- 308: aqyqf DFGlRp--SvAylqS kgkdi OMPF_ECOLI : 288- 300: aqyqf DFGlRp--SiAytkS kakdv OMPF_SALTY : 286- 300: aqyqf DFGlRpaiSyVqskG kqlng PHOE_CITFR : 277- 289: vqyqf DFGlRp--SlGyvlS kgkdi PHOE_ECOLI : 277- 289: aqyqf DFGlRp--SlGyvlS kgkdi PHOE_KLEOX : 275- 287: aqyqf DFGlRp--SlGyvlS kgkdi PHOE_KLEPN : 277- 289: aqyqf DFGlRp--SlGyvlS kgkdi PHOE_SALTY : 276- 288: iqyqf DFGlRp--SlGyvlS kgkdi PORI_BPPA2 : 288- 300: aqyqf DFGlRp--SvAylqS kgkdl N 14: 22.9761 23( 23) A-[ADEQT]-x(4)-G-x(1,2)-K-x(0,2)-A-[GN]-[DNV] Occurences: 23(23) NMPC_ECOLI : 238- 251: asgkn AEvwaaGl-KydANN iylat NMPC_SALTY : 151- 164: aagkn AEvwaaGl-KydANN iylat OMA1_NEIGO : 19- 31: pvaam ADvtlyGtiK--AGV etsrs OMA1_NEIME : 19- 31: plaav ADvslyGeiK--AGV egrni OMA2_NEIME : 19- 31: plaav ADvslyGeiK--AGV egrnf OMB1_NEIGO : 19- 31: pvaat ADvtlyGaiK--AGV qtyrs OMB1_NEIME : 19- 31: pvaam ADvtlyGtiK--AGV etsrs OMB2_NEIGO : 19- 31: pvaam ADvtlyGaiK--AGV qtyrs OMB2_NEIME : 19- 31: pvaam ADvtlyGtiK--AGV etsrs OMB3_NEIME : 19- 31: pvaam ADvtlyGtiK--AGV etsrs OMB4_NEIME : 19- 31: pvaam ADvtlyGtiK--AGV etsrs OMB_NEILA : 19- 31: pvaam ADvtlyGtiK--AGV etyrt OMB_NEISI : 19- 31: pvaam ADvtlyGqvK--AGV evsrt OMPC_ECOLI : 239- 252: gngdr AEtytgGl-KydANN iylaa OMPC_SALTI : 237- 250: gngdr ATvytgGl-KydANN iylaa OMPF_ECOLI : 233- 246: gngkk AEqwatGl-KydANN iylaa OMPF_SALTY : 231- 244: gngdr AAswavGa-KydANN vylaa PHOE_CITFR : 228- 241: gtgdk AEawatGl-KydAND iyiat PHOE_ECOLI : 228- 241: gtgkr AEawatGl-KydANN iylat PHOE_KLEOX : 226- 239: rgakk AEawatGl-KydANN iylat PHOE_KLEPN : 228- 241: aqgsk AEawatGl-KydANN iylat PHOE_SALTY : 227- 240: gtgdk AEawatGv-KydAND iyiat PORI_BPPA2 : 238- 251: asgkn AEvwaaGl-KydANN iylat O 15: 20.6123 25( 23) G-x(0,2)-D-x(0,1)-G-x-G-x(4)-[FWY]-x(3)-[EGQ] Occurences: 25(23) NMPC_ECOLI : 190- 205: dnyte GngD-GfGfsatYeyeG fgiga NMPC_ECOLI : 192- 205: ytegn G--D-GfGfsatYeyeG fgiga NMPC_SALTY : 108- 121: ayesn G--D-GfGlsatYeyeG fgvga OMA1_NEIGO : 64- 80: kigfk GqeDlGnGlkaiWqleQ kayvs OMA1_NEIME : 79- 95: figfk GseDlGeGlkavWqleQ dvsva OMA2_NEIME : 75- 91: figfk GseDlGeGlkavWqleQ dvsva OMB1_NEIGO : 64- 80: kigfk GqeDlGnGlkavWqleQ gasva OMB1_NEIME : 64- 80: kigfk GqeDlGnGlkaiWqveQ kasia OMB2_NEIGO : 64- 80: kigfk GqeDlGnGlkavWqleQ gasva OMB2_NEIME : 64- 80: kigfk GqeDlGnGlkaiWqveQ kasia OMB3_NEIME : 64- 80: kigfk GqeDlGnGlkaiWqveQ kasia OMB4_NEIME : 64- 80: kigfk GqeDlGnGlkaiWqveQ kasia OMB_NEILA : 64- 80: kigfk GqeDfGnGlkaiWqleQ sasia OMB_NEISI : 86- 101: ntsva Gt-DkGwGtresFiglE ggfgk OMPC_ECOLI : 198- 211: alrqn G--D-GvGgsitYdyeG fgigg OMPC_SALTI : 192- 205: llnqn G--D-GyGgsltYaigE gfsvg OMPF_ECOLI : 193- 206: arrsn G--D-GvGgsisYeyeG fgivg OMPF_SALTY : 192- 205: insqn G--D-GvGytmaYefdG fgvta PHOE_CITFR : 186- 199: vkkqn G--D-GfGtsvtYdfgG sdfav PHOE_ECOLI : 186- 199: vkkqn G--D-GfGtsltYdfgG sdfai PHOE_KLEOX : 185- 198: akkqn G--D-GfGtslsYdfgG sdfav PHOE_KLEPN : 186- 199: akkqn G--D-GvGtslsYdfgG tdfav PHOE_SALTY : 185- 198: vkkqn G--D-GfGtsvsYdfgG sdfav PORI_BPPA2 : 190- 205: dnyte GngD-GfGfsatYeyeG fgiga PORI_BPPA2 : 192- 205: ytegn G--D-GfGfsatYeyeG fgiga P 16: 17.8183 23( 23) Y-x(1,2)-N-x-G-x(2,4)-Y-[ADG] Occurences: 23(23) NMPC_ECOLI : 115- 124: ygsid YgrNyGva--YD igawt NMPC_SALTY : 34- 43: ygsfd YgrNyGva--YD igawt OMA1_NEIGO : 182- 192: hagfn Yk-NsGffvqYA gfykr OMA1_NEIME : 225- 235: yagln Yk-NgGfagnYA fkyar OMA2_NEIME : 220- 230: yagln Yk-NgGfagsYA fkyar OMB1_NEIGO : 186- 196: hvgln Yq-NsGffaqYA glfqr OMB1_NEIME : 183- 193: hagfn Yk-NgGffvqYG gaykr OMB2_NEIGO : 186- 196: hvgln Yq-NsGffaqYA glfqr OMB2_NEIME : 183- 193: hagfn Yk-NgGffvqYG gaykr OMB3_NEIME : 183- 193: hagfn Yk-NgGffvqYG gaykr OMB4_NEIME : 183- 193: hagfn Yk-NgGffvqYG gaykr OMB_NEILA : 186- 196: hvgln Yq-NsGffaqYA glfqr OMB_NEISI : 195- 205: dlgln Ye-NsGffgrYA gtfak OMPC_ECOLI : 111- 120: vgsfd YgrNyGvv--YD vtswt OMPC_SALTI : 111- 120: agsfd YgrNyGvt--YD vtswt OMPF_ECOLI : 120- 129: vgsfd YgrNyGvv--YD algyt OMPF_SALTY : 115- 124: vgsid YgrNyGiv--YD vesyt PHOE_CITFR : 112- 121: lgsfd YgrNlGal--YD veawt PHOE_ECOLI : 112- 121: lgsfd YgrNlGal--YD veawt PHOE_KLEOX : 111- 120: ygsfd YgrNlGal--YD veawt PHOE_KLEPN : 112- 121: ygsfd YgrNlGal--YD veawt PHOE_SALTY : 111- 120: igsfd YgrNlGal--YD veawt PORI_BPPA2 : 115- 124: ygsid YgrNyGva--YD igawt Q 17: 17.8137 24( 23) Y-x(0,1)-Q-[FIV]-x(2)-G-x(3,5)-S Occurences: 24(23) NMPC_ECOLI : 285- 294: eavaq Y-QFdfGlrp--S vaylq NMPC_SALTY : 202- 211: eavaq Y-QFdfGlrp--S iaylk OMA1_NEIGO : 280- 292: dndnt YdQVvvGaeydfS krtsa OMA1_NEIME : 346- 358: gents YdQIiaGvdydfS krtsa OMA2_NEIME : 340- 352: gents YdQIiaGvdydfS krtsa OMB1_NEIGO : 302- 314: dhdnt YdQVvvGaeydfS krtsa OMB1_NEIME : 285- 297: nynnd YdQVvvGaeydfS krtsa OMB2_NEIGO : 302- 314: nhdnt YdQVvvGaeydfS krtsa OMB2_NEIME : 285- 297: dlsnd YdQVvvGaeydfS krtsa OMB3_NEIME : 285- 297: dytnd YdQVvvGaeydfS krtsa OMB4_NEIME : 285- 297: digne YdQVvvGaeydfS krtsa OMB_NEILA : 291- 303: dgdnr YdQVvvGaeydfS krtsa OMB_NEISI : 24- 34: advtl YgQVkaGvev--S rtket OMB_NEISI : 311- 323: qgnsq YnQVivGadydfS krtsa OMPC_ECOLI : 286- 295: eavaq Y-QFdfGlrp--S laylq OMPC_SALTI : 293- 302: evvaq Y-QFdfGlrp--S vaylq OMPF_ECOLI : 285- 294: llvaq Y-QFdfGlrp--S iaytk OMPF_SALTY : 283- 294: evvaq Y-QFdfGlrpaiS yvqsk PHOE_CITFR : 274- 283: eavvq Y-QFdfGlrp--S lgyvl PHOE_ECOLI : 274- 283: eavaq Y-QFdfGlrp--S lgyvl PHOE_KLEOX : 272- 281: eavaq Y-QFdfGlrp--S lgyvl PHOE_KLEPN : 274- 283: eavaq Y-QFdfGlrp--S lgyvl PHOE_SALTY : 273- 282: eaviq Y-QFdfGlrp--S lgyvl PORI_BPPA2 : 285- 294: eavaq Y-QFdfGlrp--S vaylq R 18: 17.5679 23( 23) G-x(2,3)-Y-x(1,2)-N-x-G-x(3)-[DNQRS] Occurences: 23(23) NMPC_ECOLI : 111- 124: kfgdy GsidYgrNyGvayD igawt NMPC_SALTY : 30- 43: kfady GsfdYgrNyGvayD igawt OMA1_NEIGO : 179- 190: esyha Gfn-Yk-NsGffvQ yagfy OMA1_NEIME : 222- 233: dvyya Gln-Yk-NgGfagN yafky OMA2_NEIME : 217- 228: dvyya Gln-Yk-NgGfagS yafky OMB1_NEIGO : 183- 194: esyhv Gln-Yq-NsGffaQ yaglf OMB1_NEIME : 180- 191: esyha Gfn-Yk-NgGffvQ yggay OMB2_NEIGO : 183- 194: esyhv Gln-Yq-NsGffaQ yaglf OMB2_NEIME : 180- 191: esyha Gfn-Yk-NgGffvQ yggay OMB3_NEIME : 180- 191: esyha Gfn-Yk-NgGffvQ yggay OMB4_NEIME : 180- 191: esyha Gfn-Yk-NgGffvQ yggay OMB_NEILA : 183- 194: esyhv Gln-Yq-NsGffaQ yaglf OMB_NEISI : 192- 203: hsfdl Gln-Ye-NsGffgR yagtf OMPC_ECOLI : 107- 120: kfqdv GsfdYgrNyGvvyD vtswt OMPC_SALTI : 107- 120: kfada GsfdYgrNyGvtyD vtswt OMPF_ECOLI : 116- 129: kyadv GsfdYgrNyGvvyD algyt OMPF_SALTY : 111- 124: kyaev GsidYgrNyGivyD vesyt PHOE_CITFR : 108- 121: klknl GsfdYgrNlGalyD veawt PHOE_ECOLI : 108- 121: kykdl GsfdYgrNlGalyD veawt PHOE_KLEOX : 107- 120: kvkny GsfdYgrNlGalyD veawt PHOE_KLEPN : 108- 121: klkny GsfdYgrNlGalyD veawt PHOE_SALTY : 107- 120: klkdi GsfdYgrNlGalyD veawt PORI_BPPA2 : 111- 124: kfgdy GsidYgrNyGvayD igawt S 19: 17.5477 23( 23) D-x(1,2)-P-x-F-x(0,1)-G-x(3)-[AGSTV] Occurences: 23(23) NMPC_ECOLI : 130- 141: igawt DvlPeFgGdtwT qtdvf NMPC_SALTY : 49- 60: igawt DvlPeFgGdtwT qtdvf OMA1_NEIGO : 150- 160: vsvry Ds-PeFaGfraV qyvpn OMA1_NEIME : 168- 178: vsvry Ds-PeFsGfsgS vqfvp OMA2_NEIME : 164- 174: vsvry Ds-PdFsGfsgS vqfvp OMB1_NEIGO : 154- 164: lsvry Ds-PeFaGfsgS vqyap OMB1_NEIME : 150- 160: isvry Ds-PeFaGlsgS vqyal OMB2_NEIGO : 154- 164: lsvry Ds-PeFaGfsgS vqyap OMB2_NEIME : 150- 160: isvry Ds-PeFaGlsgS vqyal OMB3_NEIME : 150- 160: isvry Ds-PeFaGlsgS vqyal OMB4_NEIME : 150- 160: isvry Ds-PeFaGlsgS vqyal OMB_NEILA : 154- 164: asvry Ds-PeFaGfsgS vqyap OMB_NEISI : 154- 164: vsvry Ds-PvFaGfsaS aqyqp OMPC_ECOLI : 126- 137: vtswt DvlPeFgGdtyG sdnfm OMPC_SALTI : 126- 137: vtswt DvlPeFgGdtyG adnfm OMPF_ECOLI : 135- 145: algyt DmlPeF-GgdtA ysddf OMPF_SALTY : 130- 141: vesyt DmaPyFsGetwG gaytd PHOE_CITFR : 127- 137: veawt DmfPeF-GgdsS aqtdn PHOE_CITFR : 127- 138: veawt DmfPeFgGdssA qtdnf PHOE_ECOLI : 127- 137: veawt DmfPeF-GgdsS aqtdn PHOE_ECOLI : 127- 138: veawt DmfPeFgGdssA qtdnf PHOE_KLEOX : 126- 136: veawt DmfPeF-GgdsS aqtdn PHOE_KLEOX : 126- 137: veawt DmfPeFgGdssA qtdnf PHOE_KLEPN : 127- 137: veawt DmfPeF-GgdsS aqtdn PHOE_KLEPN : 127- 138: veawt DmfPeFgGdssA qtdnf PHOE_SALTY : 126- 136: veawt DmfPeF-GgdsS aqtdn PHOE_SALTY : 126- 137: veawt DmfPeFgGdssA qtdnf PORI_BPPA2 : 130- 141: igawt DvlPeFgGdtwT qtdvf T 20: 17.3636 32( 23) F-x(0,1)-G-L-x(2,4)-G-x(3)-[AGSV] Occurences: 32(23) NMPC_ECOLI : 102- 112: ktrla FaGLkf--GdygS idygr NMPC_ECOLI : 162- 172: yrnnd FfGLvd--GlnfA aqyqg NMPC_ECOLI : 163- 172: rnndf F-GLvd--GlnfA aqyqg NMPC_SALTY : 81- 91: yrktd FfGLve--GlnfA aqyqg NMPC_SALTY : 82- 91: rktdf F-GLve--GlnfA aqyqg OMA1_NEIGO : 97- 107: gnrqs FiGLkg--GfgkV rvgrl OMA1_NEIGO : 97- 109: gnrqs FiGLkggfGkvrV grlns OMA1_NEIME : 113- 125: gnres FiGLagefGtlrA grvan OMA2_NEIME : 109- 121: gnres FvGLagefGtlrA grvan OMB1_NEIGO : 97- 109: gnkqs FvGLkggfGtirA gslns OMB1_NEIME : 97- 109: gnrqs FiGLkggfGklrV grlns OMB2_NEIGO : 97- 109: gnkqs FvGLkggfGtirA gslns OMB2_NEIME : 97- 109: gnrqs FiGLkggfGklrV grlns OMB3_NEIME : 97- 109: gnrqs FiGLkggfGklrV grlns OMB4_NEIME : 97- 109: gnrqs FiGLkggfGklrV grlns OMB_NEILA : 97- 107: gnkqs FiGLkg--GfgtV ragnl OMB_NEILA : 97- 109: gnkqs FiGLkggfGtvrA gnlns OMB_NEISI : 97- 107: gtres FiGLeg--GfgkV ragkl OMB_NEISI : 97- 109: gtres FiGLeggfGkvrA gklnt OMPC_ECOLI : 157- 167: yrntd FfGLvd--GlnfA vqyqg OMPC_ECOLI : 158- 167: rntdf F-GLvd--GlnfA vqyqg OMPC_SALTI : 157- 167: yrntd FfGLvd--GldfA lqyqg OMPC_SALTI : 158- 167: rntdf F-GLvd--GldfA lqyqg OMPF_ECOLI : 166- 176: yrnsn FfGLvd--GlnfA vqylg OMPF_ECOLI : 167- 176: rnsnf F-GLvd--GlnfA vqylg OMPF_SALTY : 164- 174: yrnsd FfGLvd--GlsfG iqyqg OMPF_SALTY : 165- 174: rnsdf F-GLvd--GlsfG iqyqg PHOE_CITFR : 278- 289: qyqfd F-GLrpslGyvlS kgkdi PHOE_ECOLI : 278- 289: qyqfd F-GLrpslGyvlS kgkdi PHOE_KLEOX : 276- 287: qyqfd F-GLrpslGyvlS kgkdi PHOE_KLEPN : 278- 289: qyqfd F-GLrpslGyvlS kgkdi PHOE_SALTY : 277- 288: qyqfd F-GLrpslGyvlS kgkdi PORI_BPPA2 : 102- 112: kthla FaGLkf--GdygS idygr PORI_BPPA2 : 162- 172: yrnnd FfGLvd--GlnfA aqyqg PORI_BPPA2 : 163- 172: rnndf F-GLvd--GlnfA aqyqg Number of patterns evaluated by Pratt:6106 Total running time: 10 seconds