------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 4 sequences from file GPR1_FUN34_YAAH PATTERN CONSERVATION: CM: min Nr of Seqs to Match 4 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GPR1_FUN34_YAAH.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: FU34_YEAST 282 GPR1_YARLI 270 YAAH_ECOLI 188 YCQ0_YEAST 283 Pratt run started at Thu Feb 6 19:42:17 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 82.4010 4( 4) G-x(1,3)-F-Y-G-G-x(2)-Q-x(2)-A-G-x(2)-E-x(4)-N-T-F-G-x(2)-A-x(2)-S-x-G-x-F-W-x(4)-A-I 2: 82.4010 4( 4) A-x(1,3)-F-Y-G-G-x(2)-Q-x(2)-A-G-x(2)-E-x(4)-N-T-F-G-x(2)-A-x(2)-S-x-G-x-F-W-x(4)-A-I 3: 79.2310 4( 4) F-Y-G-G-x(2)-Q-x(2)-A-G-x(2)-E-x(4)-N-T-F-G-x(2)-A-x(2)-S-x-G-x-F-W-x(4)-A-I 4: 75.0609 4( 4) Y-G-G-x(2)-Q-x(2)-A-G-x(2)-E-x(4)-N-T-F-G-x(2)-A-x(2)-S-x-G-x-F-W-x(4)-A-I 5: 70.8909 4( 4) G-G-x(2)-Q-x(2)-A-G-x(2)-E-x(4)-N-T-F-G-x(2)-A-x(2)-S-x-G-x-F-W-x(4)-A-I 6: 66.7208 4( 4) G-x(2)-Q-x(2)-A-G-x(2)-E-x(4)-N-T-F-G-x(2)-A-x(2)-S-x-G-x-F-W-x(4)-A-I 7: 62.5508 4( 4) Q-x(2)-A-G-x(2)-E-x(4)-N-T-F-G-x(2)-A-x(2)-S-x-G-x-F-W-x(4)-A-I 8: 54.2107 4( 4) G-x(2)-E-x(4)-N-T-F-G-x(2)-A-x(2)-S-x-G-x-F-W-x(4)-A-I 9: 54.2107 4( 4) A-x(3)-E-x(4)-N-T-F-G-x(2)-A-x(2)-S-x-G-x-F-W-x(4)-A-I 10: 50.0406 4( 4) E-x(4)-N-T-F-G-x(2)-A-x(2)-S-x-G-x-F-W-x(4)-A-I 11: 49.0406 4( 4) K-x(2)-N-P-A-P-L-G-L-x(2)-F-x(2)-T-T-x(0,2)-L 12: 45.8706 4( 4) N-T-F-G-x(2)-A-x(2)-S-x-G-x-F-W-x(4)-A-I 13: 44.8706 4( 4) N-P-A-P-L-G-L-x(2)-F-x(2)-T-T-x(0,2)-L 14: 41.7005 4( 4) T-F-G-x(2)-A-x(2)-S-x-G-x-F-W-x(4)-A-I 15: 40.7005 4( 4) P-A-P-L-G-L-x(2)-F-x(2)-T-T-x(0,2)-L 16: 36.5305 4( 4) A-P-L-G-L-x(2)-F-x(2)-T-T-x(0,2)-L 17: 33.3604 4( 4) G-x(2)-A-x(2)-S-x-G-x-F-W-x(4)-A-I 18: 33.3604 4( 4) F-x(3)-A-x(2)-S-x-G-x-F-W-x(4)-A-I 19: 32.3604 4( 4) P-L-G-L-x(2)-F-x(2)-T-T-x(0,2)-L 20: 31.3604 4( 4) T-x(0,2)-A-x(2,4)-S-x-G-x-F-W-x(4)-A-I Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 135.9500 4( 4) F-Y-G-G-[ILV]-[ACV]-Q-[FIL]-x-A-G-[ILM]-x-E-x(3)-[EG]-N-T-F-G-[AGL]-[AT]-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS] B 2: 133.8995 4( 4) G-x(1,3)-F-Y-G-G-[ILV]-[ACV]-Q-[FIL]-x-A-G-[ILM]-x-E-x(3)-[EG]-N-T-F-G-[AGL]-[AT]-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI] C 3: 133.8995 4( 4) A-x(1,3)-F-Y-G-G-[ILV]-[ACV]-Q-[FIL]-x-A-G-[ILM]-x-E-x(3)-[EG]-N-T-F-G-[AGL]-[AT]-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI] D 4: 131.7799 4( 4) Y-G-G-[ILV]-[ACV]-Q-[FIL]-x-A-G-[ILM]-x-E-x(3)-[EG]-N-T-F-G-[AGL]-[AT]-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS] E 5: 130.7838 4( 4) G-G-[ILV]-[ACV]-Q-[FIL]-x-A-G-[ILM]-x-E-x(3)-[EG]-N-T-F-G-[AGL]-[AT]-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS]-x(2)-[DN] F 6: 126.6138 4( 4) G-[ILV]-[ACV]-Q-[FIL]-x-A-G-[ILM]-x-E-x(3)-[EG]-N-T-F-G-[AGL]-[AT]-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS]-x(2)-[DN] G 7: 117.0997 4( 4) Q-[FIL]-x-A-G-[ILM]-x-E-x(3)-[EG]-N-T-F-G-[AGL]-[AT]-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS]-x(2)-[DN] H 8: 110.2302 4( 4) A-G-[ILM]-x-E-x(3)-[EG]-N-T-F-G-[AGL]-[AT]-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS]-x(2)-[DN] I 9: 106.0602 4( 4) G-[ILM]-x-E-x(3)-[EG]-N-T-F-G-[AGL]-[AT]-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS]-x(2)-[DN] J 10: 99.0012 4( 4) E-x(3)-[EG]-N-T-F-G-[AGL]-[AT]-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS]-x(2)-[DN] K 11: 96.4116 4( 4) K-[FL]-[AG]-N-P-A-P-L-G-L-x-[AG]-F-[AG]-[LM]-T-T-x(0,2)-L-[NSV]-[FLM]-x(2)-[ACV]-x(3)-[AG]-x-[DGT]-[GIV]-[IP]-x-[LPV]-[ASV]-[IMV]-[AG] L 12: 91.6026 4( 4) N-T-F-G-[AGL]-[AT]-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS]-x(2)-[DN] M 13: 87.4325 4( 4) T-F-G-[AGL]-[AT]-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS]-x(2)-[DN] N 14: 85.8034 4( 4) N-P-A-P-L-G-L-x-[AG]-F-[AG]-[LM]-T-T-x(0,2)-L-[NSV]-[FLM]-x(2)-[ACV]-x(3)-[AG]-x-[DGT]-[GIV]-[IP]-x-[LPV]-[ASV]-[IMV]-[AG] O 15: 81.6333 4( 4) P-A-P-L-G-L-x-[AG]-F-[AG]-[LM]-T-T-x(0,2)-L-[NSV]-[FLM]-x(2)-[ACV]-x(3)-[AG]-x-[DGT]-[GIV]-[IP]-x-[LPV]-[ASV]-[IMV]-[AG] P 16: 77.4632 4( 4) A-P-L-G-L-x-[AG]-F-[AG]-[LM]-T-T-x(0,2)-L-[NSV]-[FLM]-x(2)-[ACV]-x(3)-[AG]-x-[DGT]-[GIV]-[IP]-x-[LPV]-[ASV]-[IMV]-[AG] Q 17: 73.3091 4( 4) F-x(3)-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS]-x(2)-[DN] R 18: 73.3091 4( 4) G-x(2)-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS]-x(2)-[DN] S 19: 73.2932 4( 4) P-L-G-L-x-[AG]-F-[AG]-[LM]-T-T-x(0,2)-L-[NSV]-[FLM]-x(2)-[ACV]-x(3)-[AG]-x-[DGT]-[GIV]-[IP]-x-[LPV]-[ASV]-[IMV]-[AG] T 20: 64.8168 4( 4) T-x(0,2)-A-x(2,4)-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS]-x(2)-[DN] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 135.9500 4( 4) F-Y-G-G-[ILV]-[ACV]-Q-[FIL]-x-A-G-[ILM]-x-E-x(3)-[EG]-N-T-F-G-[AGL]-[AT]-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS] Occurences: 4(4) FU34_YEAST : 126- 174: vgcam FYGGLVQLiAGIwEialENTFGGTALCSFGGFWLSfGAIyIpwfGIlDA ykdke GPR1_YARLI : 117- 165: vglal FYGGVCQFaAGMwEfvqENTFGAAALTSYGGFWMSwAAIeMnafGIkDS yndpi YAAH_ECOLI : 44- 92: lamgi FYGGIAQIfAGLlEykkGNTFGLTAFTSYGSFWLTlVAIlLmpkLGlTD apnaq YCQ0_YEAST : 127- 175: vgcam FYGGLVQLiAGIwEialENTFGGTALCSYGGFWLSfAAIyIpwfGIlEA yedne B 2: 133.8995 4( 4) G-x(1,3)-F-Y-G-G-[ILV]-[ACV]-Q-[FIL]-x-A-G-[ILM]-x-E-x(3)-[EG]-N-T-F-G-[AGL]-[AT]-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI] Occurences: 4(4) FU34_YEAST : 122- 171: pnvvv GcamFYGGLVQLiAGIwEialENTFGGTALCSFGGFWLSfGAIyIpwfGI ldayk GPR1_YARLI : 113- 162: psiav GlalFYGGVCQFaAGMwEfvqENTFGAAALTSYGGFWMSwAAIeMnafGI kdsyn YAAH_ECOLI : 42- 89: iilam Gi--FYGGIAQIfAGLlEykkGNTFGLTAFTSYGSFWLTlVAIlLmpkLG ltdap YCQ0_YEAST : 123- 172: pnvvv GcamFYGGLVQLiAGIwEialENTFGGTALCSYGGFWLSfAAIyIpwfGI leaye C 3: 133.8995 4( 4) A-x(1,3)-F-Y-G-G-[ILV]-[ACV]-Q-[FIL]-x-A-G-[ILM]-x-E-x(3)-[EG]-N-T-F-G-[AGL]-[AT]-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI] Occurences: 4(4) FU34_YEAST : 124- 171: vvvgc Am--FYGGLVQLiAGIwEialENTFGGTALCSFGGFWLSfGAIyIpwfGI ldayk GPR1_YARLI : 115- 162: iavgl Al--FYGGVCQFaAGMwEfvqENTFGAAALTSYGGFWMSwAAIeMnafGI kdsyn YAAH_ECOLI : 40- 89: dgiil AmgiFYGGIAQIfAGLlEykkGNTFGLTAFTSYGSFWLTlVAIlLmpkLG ltdap YCQ0_YEAST : 125- 172: vvvgc Am--FYGGLVQLiAGIwEialENTFGGTALCSYGGFWLSfAAIyIpwfGI leaye D 4: 131.7799 4( 4) Y-G-G-[ILV]-[ACV]-Q-[FIL]-x-A-G-[ILM]-x-E-x(3)-[EG]-N-T-F-G-[AGL]-[AT]-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS] Occurences: 4(4) FU34_YEAST : 127- 174: gcamf YGGLVQLiAGIwEialENTFGGTALCSFGGFWLSfGAIyIpwfGIlDA ykdke GPR1_YARLI : 118- 165: glalf YGGVCQFaAGMwEfvqENTFGAAALTSYGGFWMSwAAIeMnafGIkDS yndpi YAAH_ECOLI : 45- 92: amgif YGGIAQIfAGLlEykkGNTFGLTAFTSYGSFWLTlVAIlLmpkLGlTD apnaq YCQ0_YEAST : 128- 175: gcamf YGGLVQLiAGIwEialENTFGGTALCSYGGFWLSfAAIyIpwfGIlEA yedne E 5: 130.7838 4( 4) G-G-[ILV]-[ACV]-Q-[FIL]-x-A-G-[ILM]-x-E-x(3)-[EG]-N-T-F-G-[AGL]-[AT]-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS]-x(2)-[DN] Occurences: 4(4) FU34_YEAST : 128- 177: camfy GGLVQLiAGIwEialENTFGGTALCSFGGFWLSfGAIyIpwfGIlDAykD kesdl GPR1_YARLI : 119- 168: lalfy GGVCQFaAGMwEfvqENTFGAAALTSYGGFWMSwAAIeMnafGIkDSynD pievq YAAH_ECOLI : 46- 95: mgify GGIAQIfAGLlEykkGNTFGLTAFTSYGSFWLTlVAIlLmpkLGlTDapN aqflg YCQ0_YEAST : 129- 178: camfy GGLVQLiAGIwEialENTFGGTALCSYGGFWLSfAAIyIpwfGIlEAyeD nesdl F 6: 126.6138 4( 4) G-[ILV]-[ACV]-Q-[FIL]-x-A-G-[ILM]-x-E-x(3)-[EG]-N-T-F-G-[AGL]-[AT]-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS]-x(2)-[DN] Occurences: 4(4) FU34_YEAST : 129- 177: amfyg GLVQLiAGIwEialENTFGGTALCSFGGFWLSfGAIyIpwfGIlDAykD kesdl GPR1_YARLI : 120- 168: alfyg GVCQFaAGMwEfvqENTFGAAALTSYGGFWMSwAAIeMnafGIkDSynD pievq YAAH_ECOLI : 47- 95: gifyg GIAQIfAGLlEykkGNTFGLTAFTSYGSFWLTlVAIlLmpkLGlTDapN aqflg YCQ0_YEAST : 130- 178: amfyg GLVQLiAGIwEialENTFGGTALCSYGGFWLSfAAIyIpwfGIlEAyeD nesdl G 7: 117.0997 4( 4) Q-[FIL]-x-A-G-[ILM]-x-E-x(3)-[EG]-N-T-F-G-[AGL]-[AT]-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS]-x(2)-[DN] Occurences: 4(4) FU34_YEAST : 132- 177: ygglv QLiAGIwEialENTFGGTALCSFGGFWLSfGAIyIpwfGIlDAykD kesdl GPR1_YARLI : 123- 168: yggvc QFaAGMwEfvqENTFGAAALTSYGGFWMSwAAIeMnafGIkDSynD pievq YAAH_ECOLI : 50- 95: yggia QIfAGLlEykkGNTFGLTAFTSYGSFWLTlVAIlLmpkLGlTDapN aqflg YCQ0_YEAST : 133- 178: ygglv QLiAGIwEialENTFGGTALCSYGGFWLSfAAIyIpwfGIlEAyeD nesdl H 8: 110.2302 4( 4) A-G-[ILM]-x-E-x(3)-[EG]-N-T-F-G-[AGL]-[AT]-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS]-x(2)-[DN] Occurences: 4(4) FU34_YEAST : 135- 177: lvqli AGIwEialENTFGGTALCSFGGFWLSfGAIyIpwfGIlDAykD kesdl GPR1_YARLI : 126- 168: vcqfa AGMwEfvqENTFGAAALTSYGGFWMSwAAIeMnafGIkDSynD pievq YAAH_ECOLI : 53- 95: iaqif AGLlEykkGNTFGLTAFTSYGSFWLTlVAIlLmpkLGlTDapN aqflg YCQ0_YEAST : 136- 178: lvqli AGIwEialENTFGGTALCSYGGFWLSfAAIyIpwfGIlEAyeD nesdl I 9: 106.0602 4( 4) G-[ILM]-x-E-x(3)-[EG]-N-T-F-G-[AGL]-[AT]-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS]-x(2)-[DN] Occurences: 4(4) FU34_YEAST : 136- 177: vqlia GIwEialENTFGGTALCSFGGFWLSfGAIyIpwfGIlDAykD kesdl GPR1_YARLI : 127- 168: cqfaa GMwEfvqENTFGAAALTSYGGFWMSwAAIeMnafGIkDSynD pievq YAAH_ECOLI : 54- 95: aqifa GLlEykkGNTFGLTAFTSYGSFWLTlVAIlLmpkLGlTDapN aqflg YCQ0_YEAST : 137- 178: vqlia GIwEialENTFGGTALCSYGGFWLSfAAIyIpwfGIlEAyeD nesdl J 10: 99.0012 4( 4) E-x(3)-[EG]-N-T-F-G-[AGL]-[AT]-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS]-x(2)-[DN] Occurences: 4(4) FU34_YEAST : 139- 177: iagiw EialENTFGGTALCSFGGFWLSfGAIyIpwfGIlDAykD kesdl GPR1_YARLI : 130- 168: aagmw EfvqENTFGAAALTSYGGFWMSwAAIeMnafGIkDSynD pievq YAAH_ECOLI : 57- 95: fagll EykkGNTFGLTAFTSYGSFWLTlVAIlLmpkLGlTDapN aqflg YCQ0_YEAST : 140- 178: iagiw EialENTFGGTALCSYGGFWLSfAAIyIpwfGIlEAyeD nesdl K 11: 96.4116 4( 4) K-[FL]-[AG]-N-P-A-P-L-G-L-x-[AG]-F-[AG]-[LM]-T-T-x(0,2)-L-[NSV]-[FLM]-x(2)-[ACV]-x(3)-[AG]-x-[DGT]-[GIV]-[IP]-x-[LPV]-[ASV]-[IMV]-[AG] Occurences: 4(4) FU34_YEAST : 85- 122: papvh KFANPAPLGLsGFALTTfvLSMfnAraqGiTIPnVVVG camfy GPR1_YARLI : 76- 111: pqpsr KFGNPAPLGLsAFALTT--LVFslCtvqArGVPnPSIA vglal YAAH_ECOLI : 5- 42: mgnt KLANPAPLGLmGFGMTTilLNLhnVgyfAlDGIiLAMG ifygg YCQ0_YEAST : 86- 123: papvh KFANPAPLGLsAFALTTfvLSMfnAraqGiTVPnVVVG camfy L 12: 91.6026 4( 4) N-T-F-G-[AGL]-[AT]-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS]-x(2)-[DN] Occurences: 4(4) FU34_YEAST : 144- 177: eiale NTFGGTALCSFGGFWLSfGAIyIpwfGIlDAykD kesdl GPR1_YARLI : 135- 168: efvqe NTFGAAALTSYGGFWMSwAAIeMnafGIkDSynD pievq YAAH_ECOLI : 62- 95: eykkg NTFGLTAFTSYGSFWLTlVAIlLmpkLGlTDapN aqflg YCQ0_YEAST : 145- 178: eiale NTFGGTALCSYGGFWLSfAAIyIpwfGIlEAyeD nesdl M 13: 87.4325 4( 4) T-F-G-[AGL]-[AT]-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS]-x(2)-[DN] Occurences: 4(4) FU34_YEAST : 145- 177: ialen TFGGTALCSFGGFWLSfGAIyIpwfGIlDAykD kesdl GPR1_YARLI : 136- 168: fvqen TFGAAALTSYGGFWMSwAAIeMnafGIkDSynD pievq YAAH_ECOLI : 63- 95: ykkgn TFGLTAFTSYGSFWLTlVAIlLmpkLGlTDapN aqflg YCQ0_YEAST : 146- 178: ialen TFGGTALCSYGGFWLSfAAIyIpwfGIlEAyeD nesdl N 14: 85.8034 4( 4) N-P-A-P-L-G-L-x-[AG]-F-[AG]-[LM]-T-T-x(0,2)-L-[NSV]-[FLM]-x(2)-[ACV]-x(3)-[AG]-x-[DGT]-[GIV]-[IP]-x-[LPV]-[ASV]-[IMV]-[AG] Occurences: 4(4) FU34_YEAST : 88- 122: vhkfa NPAPLGLsGFALTTfvLSMfnAraqGiTIPnVVVG camfy GPR1_YARLI : 79- 111: srkfg NPAPLGLsAFALTT--LVFslCtvqArGVPnPSIA vglal YAAH_ECOLI : 8- 42: ntkla NPAPLGLmGFGMTTilLNLhnVgyfAlDGIiLAMG ifygg YCQ0_YEAST : 89- 123: vhkfa NPAPLGLsAFALTTfvLSMfnAraqGiTVPnVVVG camfy O 15: 81.6333 4( 4) P-A-P-L-G-L-x-[AG]-F-[AG]-[LM]-T-T-x(0,2)-L-[NSV]-[FLM]-x(2)-[ACV]-x(3)-[AG]-x-[DGT]-[GIV]-[IP]-x-[LPV]-[ASV]-[IMV]-[AG] Occurences: 4(4) FU34_YEAST : 89- 122: hkfan PAPLGLsGFALTTfvLSMfnAraqGiTIPnVVVG camfy GPR1_YARLI : 80- 111: rkfgn PAPLGLsAFALTT--LVFslCtvqArGVPnPSIA vglal YAAH_ECOLI : 9- 42: tklan PAPLGLmGFGMTTilLNLhnVgyfAlDGIiLAMG ifygg YCQ0_YEAST : 90- 123: hkfan PAPLGLsAFALTTfvLSMfnAraqGiTVPnVVVG camfy P 16: 77.4632 4( 4) A-P-L-G-L-x-[AG]-F-[AG]-[LM]-T-T-x(0,2)-L-[NSV]-[FLM]-x(2)-[ACV]-x(3)-[AG]-x-[DGT]-[GIV]-[IP]-x-[LPV]-[ASV]-[IMV]-[AG] Occurences: 4(4) FU34_YEAST : 90- 122: kfanp APLGLsGFALTTfvLSMfnAraqGiTIPnVVVG camfy GPR1_YARLI : 81- 111: kfgnp APLGLsAFALTT--LVFslCtvqArGVPnPSIA vglal YAAH_ECOLI : 10- 42: klanp APLGLmGFGMTTilLNLhnVgyfAlDGIiLAMG ifygg YCQ0_YEAST : 91- 123: kfanp APLGLsAFALTTfvLSMfnAraqGiTVPnVVVG camfy Q 17: 73.3091 4( 4) F-x(3)-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS]-x(2)-[DN] Occurences: 4(4) FU34_YEAST : 146- 177: alent FggtALCSFGGFWLSfGAIyIpwfGIlDAykD kesdl GPR1_YARLI : 137- 168: vqent FgaaALTSYGGFWMSwAAIeMnafGIkDSynD pievq YAAH_ECOLI : 64- 95: kkgnt FgltAFTSYGSFWLTlVAIlLmpkLGlTDapN aqflg YCQ0_YEAST : 147- 178: alent FggtALCSYGGFWLSfAAIyIpwfGIlEAyeD nesdl R 18: 73.3091 4( 4) G-x(2)-A-[FL]-[CT]-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS]-x(2)-[DN] Occurences: 4(4) FU34_YEAST : 147- 177: lentf GgtALCSFGGFWLSfGAIyIpwfGIlDAykD kesdl GPR1_YARLI : 138- 168: qentf GaaALTSYGGFWMSwAAIeMnafGIkDSynD pievq YAAH_ECOLI : 65- 95: kgntf GltAFTSYGSFWLTlVAIlLmpkLGlTDapN aqflg YCQ0_YEAST : 148- 178: lentf GgtALCSYGGFWLSfAAIyIpwfGIlEAyeD nesdl S 19: 73.2932 4( 4) P-L-G-L-x-[AG]-F-[AG]-[LM]-T-T-x(0,2)-L-[NSV]-[FLM]-x(2)-[ACV]-x(3)-[AG]-x-[DGT]-[GIV]-[IP]-x-[LPV]-[ASV]-[IMV]-[AG] Occurences: 4(4) FU34_YEAST : 91- 122: fanpa PLGLsGFALTTfvLSMfnAraqGiTIPnVVVG camfy GPR1_YARLI : 82- 111: fgnpa PLGLsAFALTT--LVFslCtvqArGVPnPSIA vglal YAAH_ECOLI : 11- 42: lanpa PLGLmGFGMTTilLNLhnVgyfAlDGIiLAMG ifygg YCQ0_YEAST : 92- 123: fanpa PLGLsAFALTTfvLSMfnAraqGiTVPnVVVG camfy T 20: 64.8168 4( 4) T-x(0,2)-A-x(2,4)-S-[FY]-G-[GS]-F-W-[LM]-[ST]-x-[AGV]-A-I-x-[ILM]-x(3)-[GL]-[GI]-x-[DET]-[ADS]-x(2)-[DN] Occurences: 4(4) FU34_YEAST : 149- 177: ntfgg T--Alc--SFGGFWLSfGAIyIpwfGIlDAykD kesdl GPR1_YARLI : 136- 168: fvqen TfgAaaltSYGGFWMSwAAIeMnafGIkDSynD pievq YAAH_ECOLI : 67- 95: ntfgl T--Aft--SYGSFWLTlVAIlLmpkLGlTDapN aqflg YCQ0_YEAST : 150- 178: ntfgg T--Alc--SYGGFWLSfAAIyIpwfGIlEAyeD nesdl Number of patterns evaluated by Pratt:9696 Total running time: 2 seconds