------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 4 sequences from file GM_CSF PATTERN CONSERVATION: CM: min Nr of Seqs to Match 4 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GM_CSF.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CSF2_BOVIN 143 CSF2_HUMAN 144 CSF2_MOUSE 141 CSF2_SHEEP 144 Pratt run started at Thu Feb 6 19:42:15 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 110.5914 4( 4) M-W-L-Q-x-L-L-x-L-G-x-V-x(2)-S-x-S-A-P-x-R-x-P-x(1,3)-T-x(1,3)-P-W-x-H-V-x-A-I-x-E-A-x(2)-L-L-x(5)-T 2: 106.4213 4( 4) W-L-Q-x-L-L-x-L-G-x-V-x(2)-S-x-S-A-P-x-R-x-P-x(1,3)-T-x(1,3)-P-W-x-H-V-x-A-I-x-E-A-x(2)-L-L-x(5)-T 3: 103.2513 4( 4) T-C-x-Q-T-R-L-x(5)-G-L-x-G-x(2)-T-x-L-x-G-x-L-x-M-x-A-x(1,2)-Y-x(3,4)-C-P-P-T-x-E-T-x-C-x-T-Q 4: 102.2513 4( 4) L-Q-x-L-L-x-L-G-x-V-x(2)-S-x-S-A-P-x-R-x-P-x(1,3)-T-x(1,3)-P-W-x-H-V-x-A-I-x-E-A-x(2)-L-L-x(5)-T 5: 99.0812 4( 4) C-x-Q-T-R-L-x(5)-G-L-x-G-x(2)-T-x-L-x-G-x-L-x-M-x-A-x(1,2)-Y-x(3,4)-C-P-P-T-x-E-T-x-C-x-T-Q 6: 99.0812 4( 4) F-x(5)-T-C-x-Q-T-R-L-x(5)-G-L-x-G-x(2)-T-x-L-x-G-x-L-x-M-x-A-x(1,2)-Y-x(3,4)-C-P-P-T-x-E-T-x-C 7: 99.0812 4( 4) S-x(0,1)-E-x(0,1)-F-x(5)-T-C-x-Q-T-R-L-x(5)-G-L-x-G-x(2)-T-x-L-x-G-x-L-x-M-x-A-x(2)-Y-x(3)-C-P-P-T-x-E 8: 99.0812 4( 4) V-x-S-x(0,1)-E-x(0,1)-F-x(5)-T-C-x-Q-T-R-L-x(5)-G-L-x-G-x(2)-T-x-L-x-G-x-L-x-M-x-A-x(2)-Y-x(3)-C-P-P-T 9: 99.0812 4( 4) E-V-x-S-x(0,1)-E-x(0,1)-F-x(5)-T-C-x-Q-T-R-L-x(5)-G-L-x-G-x(2)-T-x-L-x-G-x-L-x-M-x-A-x(2)-Y-x(3)-C-P-P 10: 98.5812 4( 4) E-x(1,2)-F-x(3,5)-T-C-x-Q-T-R-L-x(5)-G-L-x-G-x(2)-T-x-L-x-G-x-L-x-M-x-A-x(2)-Y-x(3)-C-P-P-T-x-E-T 11: 98.0812 4( 4) Q-x-L-L-x-L-G-x-V-x(2)-S-x-S-A-P-x-R-x-P-x(1,3)-T-x(1,3)-P-W-x-H-V-x-A-I-x-E-A-x(2)-L-L-x(5)-T 12: 95.9112 4( 4) L-L-x-L-G-x-V-x(2)-S-x-S-A-P-x-R-x-P-x(3)-T-x-P-W-x-H-V-x-A-I-x-E-A-x(2)-L-L-x(5)-T 13: 94.9112 4( 4) Q-T-R-L-x(5)-G-L-x-G-x(2)-T-x-L-x-G-x-L-x-M-x-A-x(1,2)-Y-x(3,4)-C-P-P-T-x-E-T-x-C-x-T-Q 14: 94.9112 5( 4) V-x(2,3)-E-x(0,1)-F-x(5)-T-C-x-Q-T-R-L-x(5)-G-L-x-G-x(2)-T-x-L-x-G-x-L-x-M-x-A-x(2)-Y-x(3)-C-P-P-T 15: 94.9112 6( 4) V-x(1,2)-E-x(0,1)-F-x(5)-T-C-x-Q-T-R-L-x(5)-G-L-x-G-x(2)-T-x-L-x-G-x-L-x-M-x-A-x(2)-Y-x(3)-C-P-P-T 16: 94.9112 7( 4) L-x(0,1)-L-x(0,1)-L-G-x-V-x(2)-S-x-S-A-P-x-R-x-P-x(3)-T-x-P-W-x-H-V-x-A-I-x-E-A-x(2)-L-L-x(5)-T 17: 93.9112 4( 4) L-L-x-L-G-x-V-x(2)-S-x-S-A-P-x-R-x-P-x(1,3)-T-x(1,3)-P-W-x-H-V-x-A-I-x-E-A-x(2)-L-L-x(5)-T 18: 90.7411 4( 4) T-R-L-x(5)-G-L-x-G-x(2)-T-x-L-x-G-x-L-x-M-x-A-x(1,2)-Y-x(3,4)-C-P-P-T-x-E-T-x-C-x-T-Q 19: 90.7411 6( 4) V-x(0,1)-V-x(0,1)-S-x(2)-F-x(5)-T-C-x-Q-T-R-L-x(5)-G-L-x-G-x(2)-T-x-L-x-G-x-L-x-M-x-A-x(2)-Y-x(3)-C-P 20: 90.2411 6( 4) V-x(0,2)-V-x(0,1)-S-x(2)-F-x(5)-T-C-x-Q-T-R-L-x(5)-G-L-x-G-x(2)-T-x-L-x-G-x-L-x-M-x-A-x(2)-Y-x(3)-C-P Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 156.1746 4( 4) V-[IV]-S-x(0,1)-E-x(0,1)-F-[DS]-x(2)-[EK]-[LP]-T-C-[LV]-Q-T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-[ST]-[HY]-Y-x(2)-[HY]-C-P-P-T B 2: 156.1746 4( 4) E-V-[IV]-S-x(0,1)-E-x(0,1)-F-[DS]-x(2)-[EK]-[LP]-T-C-[LV]-Q-T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-[ST]-[HY]-Y-x(2)-[HY]-C-P-P C 3: 156.1339 4( 4) S-x(0,1)-E-x(0,1)-F-[DS]-x(2)-[EK]-[LP]-T-C-[LV]-Q-T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-[ST]-[HY]-Y-x(2)-[HY]-C-P-P-T-[PQ]-E D 4: 149.8112 4( 4) F-[DS]-x(2)-[EK]-[LP]-T-C-[LV]-Q-T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-x(1,2)-Y-x(3,4)-C-P-P-T-[PQ]-E-T-[DS]-C E 5: 149.6184 4( 4) T-C-[LV]-Q-T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-x(1,2)-Y-x(3,4)-C-P-P-T-[PQ]-E-T-[DS]-C-[AEG]-T-Q-[FIV] F 6: 148.7797 5( 4) V-x(2,3)-E-x(0,1)-F-[DS]-x(2)-[EK]-[LP]-T-C-[LV]-Q-T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-[ST]-[HY]-Y-x(2)-[HY]-C-P-P-T G 7: 148.7797 6( 4) V-x(1,2)-E-x(0,1)-F-[DS]-x(2)-[EK]-[LP]-T-C-[LV]-Q-T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-[ST]-[HY]-Y-x(2)-[HY]-C-P-P-T H 8: 148.6237 4( 4) C-[LV]-Q-T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-x(1,2)-Y-x(3,4)-C-P-P-T-[PQ]-E-T-[DS]-C-[AEG]-T-Q-[FIV]-x-[ST] I 9: 147.7871 6( 4) V-x(0,1)-V-x(0,1)-S-[EN]-x-F-[DS]-x(2)-[EK]-[LP]-T-C-[LV]-Q-T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-[ST]-[HY]-Y-x(2)-[HY]-C-P J 10: 147.2871 6( 4) V-x(0,2)-V-x(0,1)-S-[EN]-x-F-[DS]-x(2)-[EK]-[LP]-T-C-[LV]-Q-T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-[ST]-[HY]-Y-x(2)-[HY]-C-P K 11: 146.0075 4( 4) E-x(1,2)-F-x(3,5)-T-C-[LV]-Q-T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-[ST]-[HY]-Y-x(2)-[HY]-C-P-P-T-[PQ]-E-T L 12: 144.4545 4( 4) Q-T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-x(1,2)-Y-x(3,4)-C-P-P-T-[PQ]-E-T-[DS]-C-[AEG]-T-Q-[FIV]-x-[ST]-[FY] M 13: 142.9094 4( 4) T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-x(1,2)-Y-x(3,4)-C-P-P-T-[PQ]-E-T-[DS]-C-[AEG]-T-Q-[FIV]-x-[ST]-[FY]-x-[DNS] N 14: 140.3800 4( 4) M-W-L-Q-[NS]-L-L-[FL]-L-G-x-V-[AV]-x-S-[FIL]-S-A-P-[AT]-R-[PQS]-P-x(1,3)-T-x(1,3)-P-W-x-H-V-[DEN]-A-I-x-E-A-x-[NRS]-L-L-[DN]-x(3)-[DV]-T O 15: 136.2100 4( 4) W-L-Q-[NS]-L-L-[FL]-L-G-x-V-[AV]-x-S-[FIL]-S-A-P-[AT]-R-[PQS]-P-x(1,3)-T-x(1,3)-P-W-x-H-V-[DEN]-A-I-x-E-A-x-[NRS]-L-L-[DN]-x(3)-[DV]-T P 16: 133.0352 7( 4) L-x(0,1)-L-x(0,1)-L-G-x-V-[AV]-x-S-[FIL]-S-A-P-[AT]-R-[PQS]-P-x-[PT]-[ASV]-T-[QR]-P-W-x-H-V-[DEN]-A-I-x-E-A-x-[NRS]-L-L-[DN]-x(3)-[DV]-T-x-[AN]-x(2)-[DNV] Q 17: 132.0399 4( 4) L-Q-[NS]-L-L-[FL]-L-G-x-V-[AV]-x-S-[FIL]-S-A-P-[AT]-R-[PQS]-P-x(1,3)-T-x(1,3)-P-W-x-H-V-[DEN]-A-I-x-E-A-x-[NRS]-L-L-[DN]-x(3)-[DV]-T R 18: 131.4212 4( 4) L-L-x-L-G-x-V-[AV]-x-S-[FIL]-S-A-P-[AT]-R-[PQS]-P-x-[PT]-[ASV]-T-[QR]-P-W-x-H-V-[DEN]-A-I-x-E-A-x-[NRS]-L-L-[DN]-x(3)-[DV]-T-x-[AN] S 19: 131.1389 4( 4) Q-[NS]-L-L-[FL]-L-G-x-V-[AV]-x-S-[FIL]-S-A-P-[AT]-R-[PQS]-P-x(1,3)-T-x(1,3)-P-W-x-H-V-[DEN]-A-I-x-E-A-x-[NRS]-L-L-[DN]-x(3)-[DV]-T-x-[AN] T 20: 123.7475 4( 4) L-L-[FL]-L-G-x-V-[AV]-x-S-[FIL]-S-A-P-[AT]-R-[PQS]-P-x(1,3)-T-x(1,3)-P-W-x-H-V-[DEN]-A-I-x-E-A-x-[NRS]-L-L-[DN]-x(3)-[DV]-T-x-[AN] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 156.1746 4( 4) V-[IV]-S-x(0,1)-E-x(0,1)-F-[DS]-x(2)-[EK]-[LP]-T-C-[LV]-Q-T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-[ST]-[HY]-Y-x(2)-[HY]-C-P-P-T Occurences: 4(4) CSF2_BOVIN : 58- 107: mndte VVS-EkFDsqEPTCLQTRLKLYKNGLQGSLTsLmGSLTMmATHYekHCPPT petsc CSF2_HUMAN : 59- 108: netve VIS-EmFDlqEPTCLQTRLELYKQGLRGSLTkLkGPLTMmASHYkqHCPPT petsc CSF2_MOUSE : 56- 105: neeve VVSnE-FSfkKLTCVQTRLKIFEQGLRGNFTkLkGALNMtASYYqtYCPPT petdc CSF2_SHEEP : 59- 108: detve VVS-EmFDsqEPTCLQTRLELYKQGLRGSLTsLtGSLTMmASHYkkHCPPT qetsc B 2: 156.1746 4( 4) E-V-[IV]-S-x(0,1)-E-x(0,1)-F-[DS]-x(2)-[EK]-[LP]-T-C-[LV]-Q-T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-[ST]-[HY]-Y-x(2)-[HY]-C-P-P Occurences: 4(4) CSF2_BOVIN : 57- 106: vmndt EVVS-EkFDsqEPTCLQTRLKLYKNGLQGSLTsLmGSLTMmATHYekHCPP tpets CSF2_HUMAN : 58- 107: mnetv EVIS-EmFDlqEPTCLQTRLELYKQGLRGSLTkLkGPLTMmASHYkqHCPP tpets CSF2_MOUSE : 55- 104: lneev EVVSnE-FSfkKLTCVQTRLKIFEQGLRGNFTkLkGALNMtASYYqtYCPP tpetd CSF2_SHEEP : 58- 107: mdetv EVVS-EmFDsqEPTCLQTRLELYKQGLRGSLTsLtGSLTMmASHYkkHCPP tqets C 3: 156.1339 4( 4) S-x(0,1)-E-x(0,1)-F-[DS]-x(2)-[EK]-[LP]-T-C-[LV]-Q-T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-[ST]-[HY]-Y-x(2)-[HY]-C-P-P-T-[PQ]-E Occurences: 4(4) CSF2_BOVIN : 60- 109: dtevv S-EkFDsqEPTCLQTRLKLYKNGLQGSLTsLmGSLTMmATHYekHCPPTPE tscgt CSF2_HUMAN : 61- 110: tvevi S-EmFDlqEPTCLQTRLELYKQGLRGSLTkLkGPLTMmASHYkqHCPPTPE tscat CSF2_MOUSE : 58- 107: evevv SnE-FSfkKLTCVQTRLKIFEQGLRGNFTkLkGALNMtASYYqtYCPPTPE tdcet CSF2_SHEEP : 61- 110: tvevv S-EmFDsqEPTCLQTRLELYKQGLRGSLTsLtGSLTMmASHYkkHCPPTQE tscet D 4: 149.8112 4( 4) F-[DS]-x(2)-[EK]-[LP]-T-C-[LV]-Q-T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-x(1,2)-Y-x(3,4)-C-P-P-T-[PQ]-E-T-[DS]-C Occurences: 4(4) CSF2_BOVIN : 63- 112: vvsek FDsqEPTCLQTRLKLYKNGLQGSLTsLmGSLTMmAthYekh-CPPTPETSC gtqfi CSF2_HUMAN : 64- 113: visem FDlqEPTCLQTRLELYKQGLRGSLTkLkGPLTMmAshYkqh-CPPTPETSC atqii CSF2_MOUSE : 61- 110: vvsne FSfkKLTCVQTRLKIFEQGLRGNFTkLkGALNMtAsyYqty-CPPTPETDC etqvt CSF2_MOUSE : 61- 110: vvsne FSfkKLTCVQTRLKIFEQGLRGNFTkLkGALNMtAs-YyqtyCPPTPETDC etqvt CSF2_SHEEP : 64- 113: vvsem FDsqEPTCLQTRLELYKQGLRGSLTsLtGSLTMmAshYkkh-CPPTQETSC etqii E 5: 149.6184 4( 4) T-C-[LV]-Q-T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-x(1,2)-Y-x(3,4)-C-P-P-T-[PQ]-E-T-[DS]-C-[AEG]-T-Q-[FIV] Occurences: 4(4) CSF2_BOVIN : 69- 116: dsqep TCLQTRLKLYKNGLQGSLTsLmGSLTMmAthYekh-CPPTPETSCGTQF isfkn CSF2_HUMAN : 70- 117: dlqep TCLQTRLELYKQGLRGSLTkLkGPLTMmAshYkqh-CPPTPETSCATQI itfes CSF2_MOUSE : 67- 114: sfkkl TCVQTRLKIFEQGLRGNFTkLkGALNMtAsyYqty-CPPTPETDCETQV ttyad CSF2_MOUSE : 67- 114: sfkkl TCVQTRLKIFEQGLRGNFTkLkGALNMtAs-YyqtyCPPTPETDCETQV ttyad CSF2_SHEEP : 70- 117: dsqep TCLQTRLELYKQGLRGSLTsLtGSLTMmAshYkkh-CPPTQETSCETQI itfks F 6: 148.7797 5( 4) V-x(2,3)-E-x(0,1)-F-[DS]-x(2)-[EK]-[LP]-T-C-[LV]-Q-T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-[ST]-[HY]-Y-x(2)-[HY]-C-P-P-T Occurences: 5(4) CSF2_BOVIN : 58- 107: mndte Vvs-EkFDsqEPTCLQTRLKLYKNGLQGSLTsLmGSLTMmATHYekHCPPT petsc CSF2_HUMAN : 59- 108: netve Vis-EmFDlqEPTCLQTRLELYKQGLRGSLTkLkGPLTMmASHYkqHCPPT petsc CSF2_MOUSE : 56- 105: neeve VvsnE-FSfkKLTCVQTRLKIFEQGLRGNFTkLkGALNMtASYYqtYCPPT petdc CSF2_MOUSE : 57- 105: eevev Vsn-E-FSfkKLTCVQTRLKIFEQGLRGNFTkLkGALNMtASYYqtYCPPT petdc CSF2_SHEEP : 59- 108: detve Vvs-EmFDsqEPTCLQTRLELYKQGLRGSLTsLtGSLTMmASHYkkHCPPT qetsc G 7: 148.7797 6( 4) V-x(1,2)-E-x(0,1)-F-[DS]-x(2)-[EK]-[LP]-T-C-[LV]-Q-T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-[ST]-[HY]-Y-x(2)-[HY]-C-P-P-T Occurences: 6(4) CSF2_BOVIN : 58- 107: mndte VvsEkFDsqEPTCLQTRLKLYKNGLQGSLTsLmGSLTMmATHYekHCPPT petsc CSF2_BOVIN : 59- 107: ndtev Vs-EkFDsqEPTCLQTRLKLYKNGLQGSLTsLmGSLTMmATHYekHCPPT petsc CSF2_HUMAN : 59- 108: netve VisEmFDlqEPTCLQTRLELYKQGLRGSLTkLkGPLTMmASHYkqHCPPT petsc CSF2_MOUSE : 57- 105: eevev VsnE-FSfkKLTCVQTRLKIFEQGLRGNFTkLkGALNMtASYYqtYCPPT petdc CSF2_SHEEP : 59- 108: detve VvsEmFDsqEPTCLQTRLELYKQGLRGSLTsLtGSLTMmASHYkkHCPPT qetsc CSF2_SHEEP : 60- 108: etvev Vs-EmFDsqEPTCLQTRLELYKQGLRGSLTsLtGSLTMmASHYkkHCPPT qetsc H 8: 148.6237 4( 4) C-[LV]-Q-T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-x(1,2)-Y-x(3,4)-C-P-P-T-[PQ]-E-T-[DS]-C-[AEG]-T-Q-[FIV]-x-[ST] Occurences: 4(4) CSF2_BOVIN : 70- 118: sqept CLQTRLKLYKNGLQGSLTsLmGSLTMmAthYekh-CPPTPETSCGTQFiS fknfk CSF2_HUMAN : 71- 119: lqept CLQTRLELYKQGLRGSLTkLkGPLTMmAshYkqh-CPPTPETSCATQIiT fesfk CSF2_MOUSE : 68- 116: fkklt CVQTRLKIFEQGLRGNFTkLkGALNMtAsyYqty-CPPTPETDCETQVtT yadfi CSF2_MOUSE : 68- 116: fkklt CVQTRLKIFEQGLRGNFTkLkGALNMtAs-YyqtyCPPTPETDCETQVtT yadfi CSF2_SHEEP : 71- 119: sqept CLQTRLELYKQGLRGSLTsLtGSLTMmAshYkkh-CPPTQETSCETQIiT fksfk I 9: 147.7871 6( 4) V-x(0,1)-V-x(0,1)-S-[EN]-x-F-[DS]-x(2)-[EK]-[LP]-T-C-[LV]-Q-T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-[ST]-[HY]-Y-x(2)-[HY]-C-P Occurences: 6(4) CSF2_BOVIN : 58- 105: mndte V-V-SEkFDsqEPTCLQTRLKLYKNGLQGSLTsLmGSLTMmATHYekHCP ptpet CSF2_HUMAN : 57- 106: emnet VeViSEmFDlqEPTCLQTRLELYKQGLRGSLTkLkGPLTMmASHYkqHCP ptpet CSF2_MOUSE : 54- 103: tlnee VeVvSNeFSfkKLTCVQTRLKIFEQGLRGNFTkLkGALNMtASYYqtYCP ptpet CSF2_MOUSE : 56- 103: neeve V-V-SNeFSfkKLTCVQTRLKIFEQGLRGNFTkLkGALNMtASYYqtYCP ptpet CSF2_SHEEP : 57- 106: vmdet VeVvSEmFDsqEPTCLQTRLELYKQGLRGSLTsLtGSLTMmASHYkkHCP ptqet CSF2_SHEEP : 59- 106: detve V-V-SEmFDsqEPTCLQTRLELYKQGLRGSLTsLtGSLTMmASHYkkHCP ptqet J 10: 147.2871 6( 4) V-x(0,2)-V-x(0,1)-S-[EN]-x-F-[DS]-x(2)-[EK]-[LP]-T-C-[LV]-Q-T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-[ST]-[HY]-Y-x(2)-[HY]-C-P Occurences: 6(4) CSF2_BOVIN : 58- 105: mndte V--V-SEkFDsqEPTCLQTRLKLYKNGLQGSLTsLmGSLTMmATHYekHCP ptpet CSF2_HUMAN : 57- 106: emnet Ve-ViSEmFDlqEPTCLQTRLELYKQGLRGSLTkLkGPLTMmASHYkqHCP ptpet CSF2_MOUSE : 54- 103: tlnee VevV-SNeFSfkKLTCVQTRLKIFEQGLRGNFTkLkGALNMtASYYqtYCP ptpet CSF2_MOUSE : 54- 103: tlnee Ve-VvSNeFSfkKLTCVQTRLKIFEQGLRGNFTkLkGALNMtASYYqtYCP ptpet CSF2_MOUSE : 56- 103: neeve V--V-SNeFSfkKLTCVQTRLKIFEQGLRGNFTkLkGALNMtASYYqtYCP ptpet CSF2_SHEEP : 57- 106: vmdet VevV-SEmFDsqEPTCLQTRLELYKQGLRGSLTsLtGSLTMmASHYkkHCP ptqet CSF2_SHEEP : 57- 106: vmdet Ve-VvSEmFDsqEPTCLQTRLELYKQGLRGSLTsLtGSLTMmASHYkkHCP ptqet CSF2_SHEEP : 59- 106: detve V--V-SEmFDsqEPTCLQTRLELYKQGLRGSLTsLtGSLTMmASHYkkHCP ptqet K 11: 146.0075 4( 4) E-x(1,2)-F-x(3,5)-T-C-[LV]-Q-T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-[ST]-[HY]-Y-x(2)-[HY]-C-P-P-T-[PQ]-E-T Occurences: 4(4) CSF2_BOVIN : 61- 110: tevvs Ek-FdsqepTCLQTRLKLYKNGLQGSLTsLmGSLTMmATHYekHCPPTPET scgtq CSF2_HUMAN : 62- 111: vevis Em-FdlqepTCLQTRLELYKQGLRGSLTkLkGPLTMmASHYkqHCPPTPET scatq CSF2_MOUSE : 60- 108: evvsn EfsFkkl--TCVQTRLKIFEQGLRGNFTkLkGALNMtASYYqtYCPPTPET dcetq CSF2_SHEEP : 62- 111: vevvs Em-FdsqepTCLQTRLELYKQGLRGSLTsLtGSLTMmASHYkkHCPPTQET scetq L 12: 144.4545 4( 4) Q-T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-x(1,2)-Y-x(3,4)-C-P-P-T-[PQ]-E-T-[DS]-C-[AEG]-T-Q-[FIV]-x-[ST]-[FY] Occurences: 4(4) CSF2_BOVIN : 72- 119: eptcl QTRLKLYKNGLQGSLTsLmGSLTMmAthYekh-CPPTPETSCGTQFiSF knfke CSF2_HUMAN : 73- 120: eptcl QTRLELYKQGLRGSLTkLkGPLTMmAshYkqh-CPPTPETSCATQIiTF esfke CSF2_MOUSE : 70- 117: kltcv QTRLKIFEQGLRGNFTkLkGALNMtAsyYqty-CPPTPETDCETQVtTY adfid CSF2_MOUSE : 70- 117: kltcv QTRLKIFEQGLRGNFTkLkGALNMtAs-YyqtyCPPTPETDCETQVtTY adfid CSF2_SHEEP : 73- 120: eptcl QTRLELYKQGLRGSLTsLtGSLTMmAshYkkh-CPPTQETSCETQIiTF ksfke M 13: 142.9094 4( 4) T-R-L-[EK]-[IL]-[FY]-[EK]-[NQ]-G-L-[QR]-G-[NS]-[FL]-T-x-L-x-G-[APS]-L-[NT]-M-x-A-x(1,2)-Y-x(3,4)-C-P-P-T-[PQ]-E-T-[DS]-C-[AEG]-T-Q-[FIV]-x-[ST]-[FY]-x-[DNS] Occurences: 4(4) CSF2_BOVIN : 73- 121: ptclq TRLKLYKNGLQGSLTsLmGSLTMmAthYekh-CPPTPETSCGTQFiSFkN fkedl CSF2_HUMAN : 74- 122: ptclq TRLELYKQGLRGSLTkLkGPLTMmAshYkqh-CPPTPETSCATQIiTFeS fkenl CSF2_MOUSE : 71- 119: ltcvq TRLKIFEQGLRGNFTkLkGALNMtAsyYqty-CPPTPETDCETQVtTYaD fidsl CSF2_MOUSE : 71- 119: ltcvq TRLKIFEQGLRGNFTkLkGALNMtAs-YyqtyCPPTPETDCETQVtTYaD fidsl CSF2_SHEEP : 74- 122: ptclq TRLELYKQGLRGSLTsLtGSLTMmAshYkkh-CPPTQETSCETQIiTFkS fkenl N 14: 140.3800 4( 4) M-W-L-Q-[NS]-L-L-[FL]-L-G-x-V-[AV]-x-S-[FIL]-S-A-P-[AT]-R-[PQS]-P-x(1,3)-T-x(1,3)-P-W-x-H-V-[DEN]-A-I-x-E-A-x-[NRS]-L-L-[DN]-x(3)-[DV]-T Occurences: 4(4) CSF2_BOVIN : 1- 49: MWLQNLLLLGtVVcSFSAPTRPPntaTr--PWqHVDAIkEAlSLLNhssDT davmn CSF2_BOVIN : 1- 49: MWLQNLLLLGtVVcSFSAPTRPPn--TatrPWqHVDAIkEAlSLLNhssDT davmn CSF2_HUMAN : 1- 49: MWLQSLLLLGtVAcSISAPARSPspsTq--PWeHVNAIqEArRLLNlsrDT aaemn CSF2_MOUSE : 1- 49: MWLQNLLFLGiVVySLSAPTRSPitvTr--PWkHVEAIkEAlNLLDdmpVT lneev CSF2_MOUSE : 1- 49: MWLQNLLFLGiVVySLSAPTRSPi--TvtrPWkHVEAIkEAlNLLDdmpVT lneev CSF2_SHEEP : 1- 49: MWLQNLLLLGtVVcSFSAPTRQPspvTr--PWqHVDAIkEAlSLLNdstDT aavmd O 15: 136.2100 4( 4) W-L-Q-[NS]-L-L-[FL]-L-G-x-V-[AV]-x-S-[FIL]-S-A-P-[AT]-R-[PQS]-P-x(1,3)-T-x(1,3)-P-W-x-H-V-[DEN]-A-I-x-E-A-x-[NRS]-L-L-[DN]-x(3)-[DV]-T Occurences: 4(4) CSF2_BOVIN : 2- 49: m WLQNLLLLGtVVcSFSAPTRPPntaTr--PWqHVDAIkEAlSLLNhssDT davmn CSF2_BOVIN : 2- 49: m WLQNLLLLGtVVcSFSAPTRPPn--TatrPWqHVDAIkEAlSLLNhssDT davmn CSF2_HUMAN : 2- 49: m WLQSLLLLGtVAcSISAPARSPspsTq--PWeHVNAIqEArRLLNlsrDT aaemn CSF2_MOUSE : 2- 49: m WLQNLLFLGiVVySLSAPTRSPitvTr--PWkHVEAIkEAlNLLDdmpVT lneev CSF2_MOUSE : 2- 49: m WLQNLLFLGiVVySLSAPTRSPi--TvtrPWkHVEAIkEAlNLLDdmpVT lneev CSF2_SHEEP : 2- 49: m WLQNLLLLGtVVcSFSAPTRQPspvTr--PWqHVDAIkEAlSLLNdstDT aavmd P 16: 133.0352 7( 4) L-x(0,1)-L-x(0,1)-L-G-x-V-[AV]-x-S-[FIL]-S-A-P-[AT]-R-[PQS]-P-x-[PT]-[ASV]-T-[QR]-P-W-x-H-V-[DEN]-A-I-x-E-A-x-[NRS]-L-L-[DN]-x(3)-[DV]-T-x-[AN]-x(2)-[DNV] Occurences: 7(4) CSF2_BOVIN : 6- 54: mwlqn LlL-LGtVVcSFSAPTRPPnTATRPWqHVDAIkEAlSLLNhssDTdAvmN dtevv CSF2_BOVIN : 6- 54: mwlqn L-LlLGtVVcSFSAPTRPPnTATRPWqHVDAIkEAlSLLNhssDTdAvmN dtevv CSF2_BOVIN : 7- 54: wlqnl L-L-LGtVVcSFSAPTRPPnTATRPWqHVDAIkEAlSLLNhssDTdAvmN dtevv CSF2_HUMAN : 6- 54: mwlqs LlL-LGtVAcSISAPARSPsPSTQPWeHVNAIqEArRLLNlsrDTaAemN etvev CSF2_HUMAN : 6- 54: mwlqs L-LlLGtVAcSISAPARSPsPSTQPWeHVNAIqEArRLLNlsrDTaAemN etvev CSF2_HUMAN : 7- 54: wlqsl L-L-LGtVAcSISAPARSPsPSTQPWeHVNAIqEArRLLNlsrDTaAemN etvev CSF2_MOUSE : 6- 54: mwlqn L-LfLGiVVySLSAPTRSPiTVTRPWkHVEAIkEAlNLLDdmpVTlNeeV evvsn CSF2_SHEEP : 6- 54: mwlqn LlL-LGtVVcSFSAPTRQPsPVTRPWqHVDAIkEAlSLLNdstDTaAvmD etvev CSF2_SHEEP : 6- 54: mwlqn L-LlLGtVVcSFSAPTRQPsPVTRPWqHVDAIkEAlSLLNdstDTaAvmD etvev CSF2_SHEEP : 7- 54: wlqnl L-L-LGtVVcSFSAPTRQPsPVTRPWqHVDAIkEAlSLLNdstDTaAvmD etvev Q 17: 132.0399 4( 4) L-Q-[NS]-L-L-[FL]-L-G-x-V-[AV]-x-S-[FIL]-S-A-P-[AT]-R-[PQS]-P-x(1,3)-T-x(1,3)-P-W-x-H-V-[DEN]-A-I-x-E-A-x-[NRS]-L-L-[DN]-x(3)-[DV]-T Occurences: 4(4) CSF2_BOVIN : 3- 49: mw LQNLLLLGtVVcSFSAPTRPPntaTr--PWqHVDAIkEAlSLLNhssDT davmn CSF2_BOVIN : 3- 49: mw LQNLLLLGtVVcSFSAPTRPPn--TatrPWqHVDAIkEAlSLLNhssDT davmn CSF2_HUMAN : 3- 49: mw LQSLLLLGtVAcSISAPARSPspsTq--PWeHVNAIqEArRLLNlsrDT aaemn CSF2_MOUSE : 3- 49: mw LQNLLFLGiVVySLSAPTRSPitvTr--PWkHVEAIkEAlNLLDdmpVT lneev CSF2_MOUSE : 3- 49: mw LQNLLFLGiVVySLSAPTRSPi--TvtrPWkHVEAIkEAlNLLDdmpVT lneev CSF2_SHEEP : 3- 49: mw LQNLLLLGtVVcSFSAPTRQPspvTr--PWqHVDAIkEAlSLLNdstDT aavmd R 18: 131.4212 4( 4) L-L-x-L-G-x-V-[AV]-x-S-[FIL]-S-A-P-[AT]-R-[PQS]-P-x-[PT]-[ASV]-T-[QR]-P-W-x-H-V-[DEN]-A-I-x-E-A-x-[NRS]-L-L-[DN]-x(3)-[DV]-T-x-[AN] Occurences: 4(4) CSF2_BOVIN : 6- 51: mwlqn LLlLGtVVcSFSAPTRPPnTATRPWqHVDAIkEAlSLLNhssDTdA vmndt CSF2_HUMAN : 6- 51: mwlqs LLlLGtVAcSISAPARSPsPSTQPWeHVNAIqEArRLLNlsrDTaA emnet CSF2_MOUSE : 6- 51: mwlqn LLfLGiVVySLSAPTRSPiTVTRPWkHVEAIkEAlNLLDdmpVTlN eevev CSF2_SHEEP : 6- 51: mwlqn LLlLGtVVcSFSAPTRQPsPVTRPWqHVDAIkEAlSLLNdstDTaA vmdet S 19: 131.1389 4( 4) Q-[NS]-L-L-[FL]-L-G-x-V-[AV]-x-S-[FIL]-S-A-P-[AT]-R-[PQS]-P-x(1,3)-T-x(1,3)-P-W-x-H-V-[DEN]-A-I-x-E-A-x-[NRS]-L-L-[DN]-x(3)-[DV]-T-x-[AN] Occurences: 4(4) CSF2_BOVIN : 4- 51: mwl QNLLLLGtVVcSFSAPTRPPntaTr--PWqHVDAIkEAlSLLNhssDTdA vmndt CSF2_BOVIN : 4- 51: mwl QNLLLLGtVVcSFSAPTRPPn--TatrPWqHVDAIkEAlSLLNhssDTdA vmndt CSF2_HUMAN : 4- 51: mwl QSLLLLGtVAcSISAPARSPspsTq--PWeHVNAIqEArRLLNlsrDTaA emnet CSF2_MOUSE : 4- 51: mwl QNLLFLGiVVySLSAPTRSPitvTr--PWkHVEAIkEAlNLLDdmpVTlN eevev CSF2_MOUSE : 4- 51: mwl QNLLFLGiVVySLSAPTRSPi--TvtrPWkHVEAIkEAlNLLDdmpVTlN eevev CSF2_SHEEP : 4- 51: mwl QNLLLLGtVVcSFSAPTRQPspvTr--PWqHVDAIkEAlSLLNdstDTaA vmdet T 20: 123.7475 4( 4) L-L-[FL]-L-G-x-V-[AV]-x-S-[FIL]-S-A-P-[AT]-R-[PQS]-P-x(1,3)-T-x(1,3)-P-W-x-H-V-[DEN]-A-I-x-E-A-x-[NRS]-L-L-[DN]-x(3)-[DV]-T-x-[AN] Occurences: 4(4) CSF2_BOVIN : 6- 51: mwlqn LLLLGtVVcSFSAPTRPPntaTr--PWqHVDAIkEAlSLLNhssDTdA vmndt CSF2_BOVIN : 6- 51: mwlqn LLLLGtVVcSFSAPTRPPn--TatrPWqHVDAIkEAlSLLNhssDTdA vmndt CSF2_HUMAN : 6- 51: mwlqs LLLLGtVAcSISAPARSPspsTq--PWeHVNAIqEArRLLNlsrDTaA emnet CSF2_MOUSE : 6- 51: mwlqn LLFLGiVVySLSAPTRSPitvTr--PWkHVEAIkEAlNLLDdmpVTlN eevev CSF2_MOUSE : 6- 51: mwlqn LLFLGiVVySLSAPTRSPi--TvtrPWkHVEAIkEAlNLLDdmpVTlN eevev CSF2_SHEEP : 6- 51: mwlqn LLLLGtVVcSFSAPTRQPspvTr--PWqHVDAIkEAlSLLNdstDTaA vmdet Number of patterns evaluated by Pratt:7651 Total running time: 2 seconds