------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 11 sequences from file GMC_OXRED_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 11 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GMC_OXRED_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ALKJ_PSEOL 558 ALOX_CANBO 663 ALOX_HANPO 664 ALOX_PICPA 33 BETA_ECOLI 556 CHOD_BREST 552 CHOD_STRSQ 546 DHGL_DROME 612 DHGL_DROPS 612 GOX_ASPNG 605 YTH2_RHOSO 493 Pratt run started at Thu Feb 6 19:42:12 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 19.8503 11( 11) G-x(1,2)-G-x(3,4)-A-x-R-L 2: 19.8503 18( 11) G-x(3,4)-G-x(3,4)-A-x-R-L 3: 16.6802 12( 11) G-x-G-x(2)-G-x(5)-R 4: 16.1802 13( 11) G-x(3,4)-A-x-R-L 5: 16.1802 11( 11) G-x-G-x(2)-G-x(3,4)-A 6: 16.1802 12( 11) G-x-G-x(1,2)-G-x(5)-R 7: 15.6802 15( 11) G-x(1,2)-G-x(3)-A-x(2,3)-L 8: 15.6802 11( 11) G-x(4)-G-x(3,4)-A-x(0,1)-R 9: 12.5102 12( 11) A-x-R-L 10: 12.5102 15( 11) G-G-S 11: 12.5102 12( 11) L-G-G 12: 12.0102 13( 11) L-x(2,3)-D-x-S 13: 12.0102 17( 11) G-x(3)-A-x(1,2)-R 14: 12.0102 27( 11) G-x(3)-A-x(2,3)-L 15: 12.0102 15( 11) G-G-x(0,1)-G 16: 11.5102 13( 11) A-x-L-x(2,4)-S 17: 11.5102 16( 11) L-x(0,2)-A-x(2)-D 18: 11.5102 18( 11) R-x(3,4)-L-x(1,2)-S 19: 11.5102 21( 11) G-x(1,2)-L-x(0,1)-A 20: 11.5102 15( 11) G-x(0,1)-L-x(2,3)-D Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 26.9469 11( 11) G-x(1,2)-G-x(3,4)-A-x-R-L-[AGST]-[AENQ]-x-[DGP] B 2: 26.9469 18( 11) G-x(3,4)-G-x(3,4)-A-x-R-L-[AGST]-[AENQ]-x-[DGP] C 3: 26.9125 11( 11) G-x-G-x-[ACGNST]-G-x(3,4)-A-x(0,1)-R-[AL]-[ANST] D 4: 26.5798 11( 11) G-x-G-x(2)-G-x(3)-[ATV]-[AGNST]-R-[AL]-[ANST] E 5: 26.0798 11( 11) G-x-G-x(1,2)-G-x(3)-[ATV]-[AGNST]-R-[AL]-[ANST] F 6: 23.2769 12( 11) G-x(3,4)-A-x-R-L-[AGST]-[AENQ]-x-[DGP] G 7: 22.9672 11( 11) G-[CGNST]-[ACTV]-x-A-x(1,2)-R-x-[AST]-[AEGNQ]-x-[ADGP] H 8: 19.7795 11( 11) G-x(1,2)-G-x-[ACGTV]-x-A-x(2,3)-L-x(3)-[DEPQ] I 9: 19.6068 11( 11) A-x-R-L-[AGST]-[AENQ]-x-[DGP] J 10: 17.8502 11( 11) G-x-G-x-[ACGNST]-G-x(3,4)-A K 11: 17.0265 11( 11) G-G-S-x(3)-[CGNV]-[AGIV] L 12: 16.5047 14( 11) G-x-[ACGV]-[AILV]-A-x(2,3)-L M 13: 14.4201 11( 11) L-G-G-[CGSTV] N 14: 13.9189 13( 11) G-G-x(0,1)-G-x(2)-[AGILV] O 15: 12.5102 12( 11) G-x-G-x(2)-G P 16: 12.0102 12( 11) G-x-G-x(1,2)-G Q 17: 12.0102 13( 11) L-x(2,3)-D-x-S R 18: 11.5102 13( 11) A-x-L-x(2,4)-S S 19: 11.5102 16( 11) L-x(0,2)-A-x(2)-D T 20: 11.5102 18( 11) R-x(3,4)-L-x(1,2)-S Best patterns with alignements: fitness hits(seqs) Pattern A 1: 26.9469 11( 11) G-x(1,2)-G-x(3,4)-A-x-R-L-[AGST]-[AENQ]-x-[DGP] Occurences: 11(11) ALKJ_PSEOL : 10- 24: iivga GsaGcvl-AnRLSAdP skrvc ALOX_CANBO : 15- 29: ivcgg GstGcvi-AgRLANvD enlkv ALOX_HANPO : 15- 29: ivvgg GstGcci-AgRLANlD dqnlt ALOX_PICPA : 15- 29: lvlgg GssGsci-AgRLANlD hslk BETA_ECOLI : 11- 25: iiiga GsaGnvl-AtRLTEdP ntsvl CHOD_BREST : 65- 79: lvigs GygGava-AlRLTQaG iptqi CHOD_BREST : 65- 79: lvigs Gy-GgavaAlRLTQaG iptqi CHOD_STRSQ : 56- 70: vvigt Gy-GaavsAlRLGEaG vqtlm DHGL_DROME : 73- 87: ivigg GsaGsvv-AsRLSEvP qwkvl DHGL_DROPS : 73- 87: ivigg GsaGsvv-AsRLSEvP qwkvl GOX_ASPNG : 50- 64: iiagg GltGltt-AaRLTEnP nisvl YTH2_RHOSO : 15- 29: lvvgg GtcGcvv-AaRLSEdP satvm B 2: 26.9469 18( 11) G-x(3,4)-G-x(3,4)-A-x-R-L-[AGST]-[AENQ]-x-[DGP] Occurences: 18(11) ALKJ_PSEOL : 8- 24: dyiiv GagsaGcvl-AnRLSAdP skrvc ALOX_CANBO : 13- 29: dvivc GggstGcvi-AgRLANvD enlkv ALOX_CANBO : 14- 29: vivcg Ggst-Gcvi-AgRLANvD enlkv ALOX_HANPO : 13- 29: diivv GggstGcci-AgRLANlD dqnlt ALOX_HANPO : 14- 29: iivvg Ggst-Gcci-AgRLANlD dqnlt ALOX_PICPA : 13- 29: dilvl GggssGsci-AgRLANlD hslk ALOX_PICPA : 14- 29: ilvlg Ggss-Gsci-AgRLANlD hslk BETA_ECOLI : 9- 25: dyiii GagsaGnvl-AtRLTEdP ntsvl CHOD_BREST : 63- 79: palvi GsgygGava-AlRLTQaG iptqi CHOD_BREST : 63- 79: palvi Gsgy-GgavaAlRLTQaG iptqi CHOD_STRSQ : 54- 70: pavvi Gtgy-GaavsAlRLGEaG vqtlm DHGL_DROME : 71- 87: dfivi GggsaGsvv-AsRLSEvP qwkvl DHGL_DROME : 72- 87: fivig Ggsa-Gsvv-AsRLSEvP qwkvl DHGL_DROPS : 71- 87: dfivi GggsaGsvv-AsRLSEvP qwkvl DHGL_DROPS : 72- 87: fivig Ggsa-Gsvv-AsRLSEvP qwkvl GOX_ASPNG : 48- 64: dyiia GggltGltt-AaRLTEnP nisvl GOX_ASPNG : 49- 64: yiiag Gglt-Gltt-AaRLTEnP nisvl YTH2_RHOSO : 13- 29: dflvv GggtcGcvv-AaRLSEdP satvm YTH2_RHOSO : 14- 29: flvvg Ggtc-Gcvv-AaRLSEdP satvm C 3: 26.9125 11( 11) G-x-G-x-[ACGNST]-G-x(3,4)-A-x(0,1)-R-[AL]-[ANST] Occurences: 11(11) ALKJ_PSEOL : 8- 21: dyiiv GaGsAGcvl-AnRLS adpsk ALOX_CANBO : 13- 26: dvivc GgGsTGcvi-AgRLA nvden ALOX_HANPO : 13- 26: diivv GgGsTGcci-AgRLA nlddq ALOX_PICPA : 13- 26: dilvl GgGsSGsci-AgRLA nldhs BETA_ECOLI : 9- 22: dyiii GaGsAGnvl-AtRLT edpnt CHOD_BREST : 63- 76: palvi GsGyGGava-AlRLT qagip CHOD_STRSQ : 354- 367: sevga GwGpNGnimtA-RAN hmwnp DHGL_DROME : 71- 84: dfivi GgGsAGsvv-AsRLS evpqw DHGL_DROPS : 71- 84: dfivi GgGsAGsvv-AsRLS evpqw GOX_ASPNG : 48- 61: dyiia GgGlTGlttaA-RLT enpni GOX_ASPNG : 48- 61: dyiia GgGlTGltt-AaRLT enpni YTH2_RHOSO : 13- 26: dflvv GgGtCGcvvaA-RLS edpsa YTH2_RHOSO : 13- 26: dflvv GgGtCGcvv-AaRLS edpsa D 4: 26.5798 11( 11) G-x-G-x(2)-G-x(3)-[ATV]-[AGNST]-R-[AL]-[ANST] Occurences: 11(11) ALKJ_PSEOL : 8- 21: dyiiv GaGsaGcvlANRLS adpsk ALOX_CANBO : 13- 26: dvivc GgGstGcviAGRLA nvden ALOX_HANPO : 13- 26: diivv GgGstGcciAGRLA nlddq ALOX_PICPA : 13- 26: dilvl GgGssGsciAGRLA nldhs BETA_ECOLI : 9- 22: dyiii GaGsaGnvlATRLT edpnt CHOD_BREST : 362- 375: sqvge GwGnnGnimVGRAN hmwda CHOD_STRSQ : 354- 367: sevga GwGpnGnimTARAN hmwnp DHGL_DROME : 71- 84: dfivi GgGsaGsvvASRLS evpqw DHGL_DROPS : 71- 84: dfivi GgGsaGsvvASRLS evpqw GOX_ASPNG : 48- 61: dyiia GgGltGlttAARLT enpni YTH2_RHOSO : 13- 26: dflvv GgGtcGcvvAARLS edpsa E 5: 26.0798 11( 11) G-x-G-x(1,2)-G-x(3)-[ATV]-[AGNST]-R-[AL]-[ANST] Occurences: 11(11) ALKJ_PSEOL : 8- 21: dyiiv GaGsaGcvlANRLS adpsk ALOX_CANBO : 13- 26: dvivc GgGstGcviAGRLA nvden ALOX_HANPO : 13- 26: diivv GgGstGcciAGRLA nlddq ALOX_PICPA : 13- 26: dilvl GgGssGsciAGRLA nldhs BETA_ECOLI : 9- 22: dyiii GaGsaGnvlATRLT edpnt CHOD_BREST : 362- 375: sqvge GwGnnGnimVGRAN hmwda CHOD_STRSQ : 354- 367: sevga GwGpnGnimTARAN hmwnp DHGL_DROME : 71- 84: dfivi GgGsaGsvvASRLS evpqw DHGL_DROPS : 71- 84: dfivi GgGsaGsvvASRLS evpqw GOX_ASPNG : 48- 61: dyiia GgGltGlttAARLT enpni YTH2_RHOSO : 13- 26: dflvv GgGtcGcvvAARLS edpsa F 6: 23.2769 12( 11) G-x(3,4)-A-x-R-L-[AGST]-[AENQ]-x-[DGP] Occurences: 12(11) ALKJ_PSEOL : 13- 24: gagsa Gcvl-AnRLSAdP skrvc ALOX_CANBO : 18- 29: gggst Gcvi-AgRLANvD enlkv ALOX_HANPO : 18- 29: gggst Gcci-AgRLANlD dqnlt ALOX_PICPA : 18- 29: gggss Gsci-AgRLANlD hslk BETA_ECOLI : 14- 25: gagsa Gnvl-AtRLTEdP ntsvl CHOD_BREST : 67- 79: igsgy GgavaAlRLTQaG iptqi CHOD_BREST : 68- 79: gsgyg Gava-AlRLTQaG iptqi CHOD_STRSQ : 58- 70: igtgy GaavsAlRLGEaG vqtlm DHGL_DROME : 76- 87: gggsa Gsvv-AsRLSEvP qwkvl DHGL_DROPS : 76- 87: gggsa Gsvv-AsRLSEvP qwkvl GOX_ASPNG : 53- 64: ggglt Gltt-AaRLTEnP nisvl YTH2_RHOSO : 18- 29: gggtc Gcvv-AaRLSEdP satvm G 7: 22.9672 11( 11) G-[CGNST]-[ACTV]-x-A-x(1,2)-R-x-[AST]-[AEGNQ]-x-[ADGP] Occurences: 11(11) ALKJ_PSEOL : 13- 24: gagsa GCVlAn-RlSAdP skrvc ALOX_CANBO : 18- 29: gggst GCViAg-RlANvD enlkv ALOX_HANPO : 18- 29: gggst GCCiAg-RlANlD dqnlt ALOX_PICPA : 18- 29: gggss GSCiAg-RlANlD hslk BETA_ECOLI : 14- 25: gagsa GNVlAt-RlTEdP ntsvl CHOD_BREST : 67- 79: igsgy GGAvAalRlTQaG iptqi CHOD_STRSQ : 26- 38: aalag GTTiAapRaAAaA ksaad DHGL_DROME : 76- 87: gggsa GSVvAs-RlSEvP qwkvl DHGL_DROPS : 76- 87: gggsa GSVvAs-RlSEvP qwkvl GOX_ASPNG : 191- 203: chgvn GTVhAgpRdTGdD yspiv YTH2_RHOSO : 18- 29: gggtc GCVvAa-RlSEdP satvm H 8: 19.7795 11( 11) G-x(1,2)-G-x-[ACGTV]-x-A-x(2,3)-L-x(3)-[DEPQ] Occurences: 11(11) ALKJ_PSEOL : 10- 24: iivga GsaGcVlAnr-LsadP skrvc ALOX_CANBO : 15- 29: ivcgg GstGcViAgr-LanvD enlkv ALOX_HANPO : 15- 29: ivvgg GstGcCiAgr-LanlD dqnlt ALOX_PICPA : 15- 29: lvlgg GssGsCiAgr-LanlD hslk BETA_ECOLI : 11- 25: iiiga GsaGnVlAtr-LtedP ntsvl CHOD_BREST : 63- 77: palvi Gs-GyGgAvaaLrltQ agipt CHOD_STRSQ : 54- 68: pavvi Gt-GyGaAvsaLrlgE agvqt DHGL_DROME : 73- 87: ivigg GsaGsVvAsr-LsevP qwkvl DHGL_DROPS : 73- 87: ivigg GsaGsVvAsr-LsevP qwkvl GOX_ASPNG : 50- 64: iiagg GltGlTtAar-LtenP nisvl YTH2_RHOSO : 15- 29: lvvgg GtcGcVvAar-LsedP satvm I 9: 19.6068 11( 11) A-x-R-L-[AGST]-[AENQ]-x-[DGP] Occurences: 11(11) ALKJ_PSEOL : 17- 24: agcvl AnRLSAdP skrvc ALOX_CANBO : 22- 29: tgcvi AgRLANvD enlkv ALOX_HANPO : 22- 29: tgcci AgRLANlD dqnlt ALOX_PICPA : 22- 29: sgsci AgRLANlD hslk BETA_ECOLI : 18- 25: agnvl AtRLTEdP ntsvl CHOD_BREST : 72- 79: ggava AlRLTQaG iptqi CHOD_STRSQ : 63- 70: gaavs AlRLGEaG vqtlm DHGL_DROME : 80- 87: agsvv AsRLSEvP qwkvl DHGL_DROPS : 80- 87: agsvv AsRLSEvP qwkvl GOX_ASPNG : 57- 64: tgltt AaRLTEnP nisvl YTH2_RHOSO : 22- 29: cgcvv AaRLSEdP satvm J 10: 17.8502 11( 11) G-x-G-x-[ACGNST]-G-x(3,4)-A Occurences: 11(11) ALKJ_PSEOL : 8- 17: dyiiv GaGsAGcvl-A nrlsa ALOX_CANBO : 13- 22: dvivc GgGsTGcvi-A grlan ALOX_HANPO : 13- 22: diivv GgGsTGcci-A grlan ALOX_PICPA : 13- 22: dilvl GgGsSGsci-A grlan BETA_ECOLI : 9- 18: dyiii GaGsAGnvl-A trlte CHOD_BREST : 63- 72: palvi GsGyGGava-A lrltq CHOD_STRSQ : 354- 364: sevga GwGpNGnimtA ranhm DHGL_DROME : 71- 80: dfivi GgGsAGsvv-A srlse DHGL_DROPS : 71- 80: dfivi GgGsAGsvv-A srlse GOX_ASPNG : 48- 57: dyiia GgGlTGltt-A arlte GOX_ASPNG : 48- 58: dyiia GgGlTGlttaA rlten YTH2_RHOSO : 13- 22: dflvv GgGtCGcvv-A arlse YTH2_RHOSO : 13- 23: dflvv GgGtCGcvvaA rlsed K 11: 17.0265 11( 11) G-G-S-x(3)-[CGNV]-[AGIV] Occurences: 11(11) ALKJ_PSEOL : 83- 90: rgktl GGSssiNA mvyir ALOX_CANBO : 14- 21: vivcg GGStgcVI agrla ALOX_HANPO : 14- 21: iivvg GGStgcCI agrla ALOX_PICPA : 14- 21: ilvlg GGSsgsCI agrla BETA_ECOLI : 86- 93: rgkgl GGSsliNG mcyir CHOD_BREST : 159- 166: grgvg GGSlvnGG mavtp CHOD_STRSQ : 151- 158: grgvg GGSlvnGG mavep DHGL_DROME : 72- 79: fivig GGSagsVV asrls DHGL_DROPS : 72- 79: fivig GGSagsVV asrls GOX_ASPNG : 123- 130: sgngl GGStlvNG gtwtr YTH2_RHOSO : 89- 96: rgrtl GGSgavNG ayfmr L 12: 16.5047 14( 11) G-x-[ACGV]-[AILV]-A-x(2,3)-L Occurences: 14(11) ALKJ_PSEOL : 13- 20: gagsa GcVLAnr-L sadps ALKJ_PSEOL : 266- 273: llmls GvGAAae-L kehgv ALOX_CANBO : 18- 25: gggst GcVIAgr-L anvde ALOX_HANPO : 18- 25: gggst GcCIAgr-L anldd ALOX_HANPO : 282- 289: vlqrs GiGAAhh-L rsvgv ALOX_PICPA : 18- 25: gggss GsCIAgr-L anldh BETA_ECOLI : 14- 21: gagsa GnVLAtr-L tedpn CHOD_BREST : 67- 75: igsgy GgAVAalrL tqagi CHOD_BREST : 68- 75: gsgyg GaVAAlr-L tqagi CHOD_STRSQ : 56- 64: vvigt GyGAAvsaL rlgea DHGL_DROME : 76- 83: gggsa GsVVAsr-L sevpq DHGL_DROPS : 76- 83: gggsa GsVVAsr-L sevpq GOX_ASPNG : 485- 492: eldll GqAAAtq-L arnis YTH2_RHOSO : 18- 25: gggtc GcVVAar-L sedps M 13: 14.4201 11( 11) L-G-G-[CGSTV] Occurences: 11(11) ALKJ_PSEOL : 82- 85: prgkt LGGS ssina ALOX_CANBO : 90- 93: pqani LGGG ssinf ALOX_HANPO : 91- 94: pcani LGGG ssinf ALOX_PICPA : 12- 15: fdilv LGGG ssgsc BETA_ECOLI : 85- 88: grgkg LGGS sling CHOD_BREST : 494- 497: ftyhp LGGV llnka CHOD_STRSQ : 486- 489: fcyhp LGGC vlgka DHGL_DROME : 147- 150: prgkv LGGT svlng DHGL_DROPS : 147- 150: prgkv LGGT svmng GOX_ASPNG : 122- 125: rsgng LGGS tlvng YTH2_RHOSO : 88- 91: argrt LGGS gavng N 14: 13.9189 13( 11) G-G-x(0,1)-G-x(2)-[AGILV] Occurences: 13(11) ALKJ_PSEOL : 374- 380: grkia GGyGytL hicdl ALOX_CANBO : 13- 18: dvivc GG-GstG cviag ALOX_CANBO : 91- 96: qanil GG-GssI nfmmy ALOX_HANPO : 13- 18: diivv GG-GstG cciag ALOX_HANPO : 92- 97: canil GG-GssI nflmy ALOX_PICPA : 13- 18: dilvl GG-GssG sciag BETA_ECOLI : 333- 339: aewlf GGtGvgA snhfe CHOD_BREST : 158- 163: qgrgv GG-GslV nggma CHOD_STRSQ : 150- 155: vgrgv GG-GslV nggma DHGL_DROME : 71- 76: dfivi GG-GsaG svvas DHGL_DROPS : 71- 76: dfivi GG-GsaG svvas GOX_ASPNG : 48- 53: dyiia GG-GltG lttaa YTH2_RHOSO : 13- 18: dflvv GG-GtcG cvvaa O 15: 12.5102 12( 11) G-x-G-x(2)-G Occurences: 12(11) ALKJ_PSEOL : 8- 13: dyiiv GaGsaG cvlan ALOX_CANBO : 13- 18: dvivc GgGstG cviag ALOX_HANPO : 13- 18: diivv GgGstG cciag ALOX_PICPA : 13- 18: dilvl GgGssG sciag BETA_ECOLI : 9- 14: dyiii GaGsaG nvlat CHOD_BREST : 63- 68: palvi GsGygG avaal CHOD_BREST : 362- 367: sqvge GwGnnG nimvg CHOD_STRSQ : 354- 359: sevga GwGpnG nimta DHGL_DROME : 71- 76: dfivi GgGsaG svvas DHGL_DROPS : 71- 76: dfivi GgGsaG svvas GOX_ASPNG : 48- 53: dyiia GgGltG lttaa YTH2_RHOSO : 13- 18: dflvv GgGtcG cvvaa P 16: 12.0102 12( 11) G-x-G-x(1,2)-G Occurences: 12(11) ALKJ_PSEOL : 8- 13: dyiiv GaGsaG cvlan ALOX_CANBO : 13- 18: dvivc GgGstG cviag ALOX_HANPO : 13- 18: diivv GgGstG cciag ALOX_PICPA : 13- 18: dilvl GgGssG sciag BETA_ECOLI : 9- 14: dyiii GaGsaG nvlat CHOD_BREST : 63- 68: palvi GsGygG avaal CHOD_BREST : 362- 367: sqvge GwGnnG nimvg CHOD_STRSQ : 354- 359: sevga GwGpnG nimta DHGL_DROME : 71- 76: dfivi GgGsaG svvas DHGL_DROPS : 71- 76: dfivi GgGsaG svvas GOX_ASPNG : 48- 53: dyiia GgGltG lttaa YTH2_RHOSO : 13- 18: dflvv GgGtcG cvvaa Q 17: 12.0102 13( 11) L-x(2,3)-D-x-S Occurences: 13(11) ALKJ_PSEOL : 20- 25: vlanr Lsa-DpS krvcl ALOX_CANBO : 601- 607: hgvkg LkvaDlS vcpdn ALOX_HANPO : 602- 608: ygvqn LkvaDlS vcpdn ALOX_PICPA : 25- 31: ciagr LanlDhS lk BETA_ECOLI : 500- 506: hgleg LrvvDaS impqi CHOD_BREST : 515- 521: peypg LyvvDgS lvpgn CHOD_STRSQ : 172- 178: yfeei LprvDsS emydr CHOD_STRSQ : 507- 513: agykn LyvtDgS lipgs DHGL_DROME : 573- 579: hgirg LrvmDtS impkv DHGL_DROPS : 573- 579: hgvrg LrvmDtS impkv GOX_ASPNG : 566- 572: ygvqg LrviDgS ipptq YTH2_RHOSO : 25- 30: vvaar Lse-DpS atvml YTH2_RHOSO : 458- 464: igaqg LsivDtS ilpti R 18: 11.5102 13( 11) A-x-L-x(2,4)-S Occurences: 13(11) ALKJ_PSEOL : 49- 54: mplgi AlLsn--S kklnw ALKJ_PSEOL : 198- 205: wssar AfLhgvlS rpnld ALKJ_PSEOL : 429- 435: ikigr AiLqap-S makhf ALOX_CANBO : 510- 516: plhlt AnLyhg-S wstpi ALOX_HANPO : 512- 518: pkhlt AnLyhg-S wtvpi ALOX_PICPA : 26- 31: iagrl AnLdh--S lk BETA_ECOLI : 409- 416: phqhp AiLfnymS heqdw CHOD_BREST : 412- 419: iaplp AgLetyvS lylai CHOD_STRSQ : 404- 411: iapmp AgLetwvS lylai DHGL_DROME : 452- 458: iqifp AvLnpr-S rgfig DHGL_DROPS : 452- 458: iqifp AvLnpk-S rgyit GOX_ASPNG : 596- 603: lkisd AiLedyaS mq YTH2_RHOSO : 23- 30: gcvva ArLsedpS atvml S 19: 11.5102 16( 11) L-x(0,2)-A-x(2)-D Occurences: 16(11) ALKJ_PSEOL : 142- 146: gvdge L--AvsD lkyin ALOX_CANBO : 25- 29: viagr L--AnvD enlkv ALOX_CANBO : 368- 372: pteae L--AtaD kafqq ALOX_HANPO : 25- 29: ciagr L--AnlD dqnlt ALOX_HANPO : 370- 374: pteee L--AtaD edfrr ALOX_HANPO : 370- 376: pteee LatAdeD frrgy ALOX_PICPA : 25- 29: ciagr L--AnlD hslk BETA_ECOLI : 277- 282: vgnae Ll-AefD iplvh BETA_ECOLI : 278- 282: gnael L--AefD iplvh CHOD_BREST : 51- 55: apsrt L--AdgD rvpal CHOD_STRSQ : 474- 479: lfgtq Lk-AfaD dfcyh CHOD_STRSQ : 491- 497: lggcv LgkAtdD ygrva DHGL_DROME : 93- 99: qwkvl LieAggD epvga DHGL_DROPS : 93- 99: qwkvl LieAggD epvga GOX_ASPNG : 87- 92: piied Ln-AygD ifgss GOX_ASPNG : 211- 217: pivka LmsAveD rgvpt YTH2_RHOSO : 363- 367: rgsie L--AsgD pagap T 20: 11.5102 18( 11) R-x(3,4)-L-x(1,2)-S Occurences: 18(11) ALKJ_PSEOL : 78- 85: slfwp Rgkt-LggS ssina ALKJ_PSEOL : 318- 325: lsfip RgvsgLf-S yvfkr ALKJ_PSEOL : 330- 336: syvfk Regf-Lt-S nvaes ALKJ_PSEOL : 390- 397: llpks RgrigLk-S anplq ALOX_CANBO : 57- 63: pgiyp Rnmr-Ld-S ktatf ALOX_HANPO : 58- 64: pgvyp Rnmr-Ld-S ktatf ALOX_PICPA : 24- 31: sciag Rlan-LdhS lk BETA_ECOLI : 81- 88: rmecg Rgkg-LggS sling BETA_ECOLI : 532- 540: iadmi RgqeaLprS tagyf CHOD_BREST : 136- 143: nksid RyvgvLd-S erfsg CHOD_STRSQ : 108- 115: swfkn RteapLg-S flwld DHGL_DROME : 459- 466: lnprs RgfigLr-S adple DHGL_DROPS : 128- 134: ntepe Rmac-Ls-S meqrc DHGL_DROPS : 459- 466: lnpks RgyitLr-S adpld GOX_ASPNG : 117- 125: qtali RsgngLggS tlvng YTH2_RHOSO : 84- 91: astia Rgrt-LggS gavng YTH2_RHOSO : 358- 365: maprs RgsieLa-S gdpag YTH2_RHOSO : 423- 431: ewves RlgtsLhmS gscvm Number of patterns evaluated by Pratt:1061 Total running time: 2 seconds