------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 9 sequences from file GLYCOSYL_HYDROL_F8 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 9 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GLYCOSYL_HYDROL_F8.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: GUB_BACCI 409 GUN2_CLOJO 460 GUNA_ACEXY 342 GUNA_CLOTM 477 GUNC_CLOCE 460 GUNY_ERWCH 332 GUN_BACSP 463 GUN_CELUD 359 YHJM_ECOLI 368 Pratt run started at Thu Feb 6 19:41:46 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 25.0203 9( 9) A-x-D-x-D-x(3)-A-x(2)-L-x(2)-A 2: 20.8503 9( 9) D-x-D-x(3)-A-x(2)-L-x(2)-A 3: 16.6802 9( 9) D-x(3)-A-x(2)-L-x(2)-A 4: 16.1802 11( 9) A-x(3)-D-x(3)-A-x(2,3)-L 5: 15.6802 10( 9) A-x(3)-D-x(3)-A-x(3,5)-A 6: 15.6802 11( 9) A-x(1,2)-L-x(1,2)-A-x(3)-W 7: 15.6802 9( 9) A-x(2,3)-L-x(2)-A-x(2,3)-W 8: 15.1802 14( 9) A-x(3,4)-D-x(3)-A-x(3,5)-A 9: 15.1802 12( 9) A-x(0,2)-L-x(2)-A-x(2,3)-W 10: 14.6802 12( 9) D-G-x(0,2)-D-x(3,5)-A 11: 14.6802 13( 9) D-G-x(2,4)-A-x(3,5)-A 12: 14.6802 14( 9) D-x(0,2)-I-x(0,2)-A-x(5)-A 13: 14.6802 9( 9) G-D-x(3,5)-A-x(2,4)-L 14: 12.5102 12( 9) A-x(2)-L-x(2)-A 15: 12.5102 9( 9) I-x(3)-L-x(2)-A 16: 12.0102 16( 9) G-x(1,2)-L-x(5)-L 17: 12.0102 10( 9) D-x(0,1)-I-x(3)-L 18: 12.0102 13( 9) A-x(3,4)-A-x-G 19: 12.0102 12( 9) D-x(5)-A-x(4,5)-A 20: 12.0102 9( 9) L-x(2,3)-D-W Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 43.5238 9( 9) A-[ST]-D-[AG]-D-x(2)-[IM]-A-x-[AS]-L-[GILV]-x-A-x(3)-[FW] B 2: 40.3446 9( 9) A-[ST]-D-[AG]-D-x(2)-[IM]-A-x(2)-L-[GILV]-x-A-x(3)-[FW] C 3: 36.1783 9( 9) D-[AG]-D-x(2)-[IM]-A-x-[AS]-L-[GILV]-x-A-x(3)-[FW] D 4: 32.9338 9( 9) A-[ST]-D-[AG]-D-x(2)-[IM]-A-x(3,5)-A-x(3)-[FW] E 5: 28.8381 9( 9) D-x(2)-[IM]-A-x-[AS]-L-[GILV]-x-A-x(3)-[FW] F 6: 26.0884 9( 9) D-[AG]-D-x(2)-[IM]-A-x(4,5)-A-x(3)-[FW] G 7: 21.9183 12( 9) A-x(3,4)-D-x(2)-[IM]-A-x(3,5)-A-x(3)-[FW] H 8: 21.6581 9( 9) A-x(2,3)-L-x(2)-A-x(2,3)-W-x-[DEPST]-x(4)-[DNQT]-x(4)-[AGILP] I 9: 21.3610 9( 9) A-x-[AS]-L-[GILV]-x-A-x(3)-[FW] J 10: 21.2236 9( 9) I-[AV]-x(2)-L-[GILV]-x-A-x(4)-[GQ] K 11: 21.1581 12( 9) A-x(0,2)-L-x(2)-A-x(2,3)-W-x-[DEPST]-x(4)-[DNQT]-x(4)-[AGILP] L 12: 19.4820 11( 9) A-x(1,2)-L-x(1,2)-A-x(3)-W-x-[DEQST]-x(4)-[DGNQT] M 13: 16.9194 11( 9) D-G-x(0,2)-D-x(3,5)-A-x(3)-[AILV] N 14: 14.6802 13( 9) D-G-x(2,4)-A-x(3,5)-A O 15: 14.6802 14( 9) D-x(0,2)-I-x(0,2)-A-x(5)-A P 16: 14.6802 9( 9) G-D-x(3,5)-A-x(2,4)-L Q 17: 14.6292 10( 9) D-x(0,1)-I-x(2)-[APS]-L R 18: 14.2508 9( 9) L-x(2,3)-D-W-x-[ADQT] S 19: 14.2003 12( 9) G-x(1,2)-L-x(5)-L-x(2)-[AGST] T 20: 13.6624 11( 9) A-x(3,4)-A-[DGNQST]-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 43.5238 9( 9) A-[ST]-D-[AG]-D-x(2)-[IM]-A-x-[AS]-L-[GILV]-x-A-x(3)-[FW] Occurences: 9(9) GUB_BACCI : 154- 172: egads ATDGDmdIAySLLlAdkqW gssgs GUN2_CLOJO : 153- 171: naiga ATDADedIAvSLVfAhkkW gtsgg GUNA_ACEXY : 112- 130: pdknn ATDGDllIAlALGrAgkrF qrpdy GUNA_CLOTM : 150- 168: ggdga ATDADedIAlALIfAdklW gssga GUNC_CLOCE : 153- 171: dsiga ATDADedIAvSLVfAhkkW gtsgg GUNY_ERWCH : 108- 126: vdknn ASDGDvlIAwALLkAgnkW qdnry GUN_BACSP : 189- 207: ghfds ATDGDldIAySLLlAhkqW gssgk GUN_CELUD : 108- 126: adknn ATDGDtlIAwALLrAqkqW qdkry YHJM_ECOLI : 114- 132: ldsns ASDGDvwMAwSLLeAgrlW keqry B 2: 40.3446 9( 9) A-[ST]-D-[AG]-D-x(2)-[IM]-A-x(2)-L-[GILV]-x-A-x(3)-[FW] Occurences: 9(9) GUB_BACCI : 154- 172: egads ATDGDmdIAysLLlAdkqW gssgs GUN2_CLOJO : 153- 171: naiga ATDADedIAvsLVfAhkkW gtsgg GUNA_ACEXY : 112- 130: pdknn ATDGDllIAlaLGrAgkrF qrpdy GUNA_CLOTM : 150- 168: ggdga ATDADedIAlaLIfAdklW gssga GUNC_CLOCE : 153- 171: dsiga ATDADedIAvsLVfAhkkW gtsgg GUNY_ERWCH : 108- 126: vdknn ASDGDvlIAwaLLkAgnkW qdnry GUN_BACSP : 189- 207: ghfds ATDGDldIAysLLlAhkqW gssgk GUN_CELUD : 108- 126: adknn ATDGDtlIAwaLLrAqkqW qdkry YHJM_ECOLI : 114- 132: ldsns ASDGDvwMAwsLLeAgrlW keqry C 3: 36.1783 9( 9) D-[AG]-D-x(2)-[IM]-A-x-[AS]-L-[GILV]-x-A-x(3)-[FW] Occurences: 9(9) GUB_BACCI : 156- 172: adsat DGDmdIAySLLlAdkqW gssgs GUN2_CLOJO : 155- 171: igaat DADedIAvSLVfAhkkW gtsgg GUNA_ACEXY : 114- 130: knnat DGDllIAlALGrAgkrF qrpdy GUNA_CLOTM : 152- 168: dgaat DADedIAlALIfAdklW gssga GUNC_CLOCE : 155- 171: igaat DADedIAvSLVfAhkkW gtsgg GUNY_ERWCH : 110- 126: knnas DGDvlIAwALLkAgnkW qdnry GUN_BACSP : 191- 207: fdsat DGDldIAySLLlAhkqW gssgk GUN_CELUD : 110- 126: knnat DGDtlIAwALLrAqkqW qdkry YHJM_ECOLI : 116- 132: snsas DGDvwMAwSLLeAgrlW keqry D 4: 32.9338 9( 9) A-[ST]-D-[AG]-D-x(2)-[IM]-A-x(3,5)-A-x(3)-[FW] Occurences: 9(9) GUB_BACCI : 154- 172: egads ATDGDmdIAyslllAdkqW gssgs GUN2_CLOJO : 153- 171: naiga ATDADedIAvslvfAhkkW gtsgg GUNA_ACEXY : 112- 130: pdknn ATDGDllIAlalgrAgkrF qrpdy GUNA_CLOTM : 150- 168: ggdga ATDADedIAlalifAdklW gssga GUNC_CLOCE : 153- 171: dsiga ATDADedIAvslvfAhkkW gtsgg GUNY_ERWCH : 108- 126: vdknn ASDGDvlIAwallkAgnkW qdnry GUN_BACSP : 189- 207: ghfds ATDGDldIAyslllAhkqW gssgk GUN_CELUD : 108- 126: adknn ATDGDtlIAwallrAqkqW qdkry YHJM_ECOLI : 114- 132: ldsns ASDGDvwMAwslleAgrlW keqry E 5: 28.8381 9( 9) D-x(2)-[IM]-A-x-[AS]-L-[GILV]-x-A-x(3)-[FW] Occurences: 9(9) GUB_BACCI : 158- 172: satdg DmdIAySLLlAdkqW gssgs GUN2_CLOJO : 157- 171: aatda DedIAvSLVfAhkkW gtsgg GUNA_ACEXY : 116- 130: natdg DllIAlALGrAgkrF qrpdy GUNA_CLOTM : 154- 168: aatda DedIAlALIfAdklW gssga GUNC_CLOCE : 157- 171: aatda DedIAvSLVfAhkkW gtsgg GUNY_ERWCH : 112- 126: nasdg DvlIAwALLkAgnkW qdnry GUN_BACSP : 193- 207: satdg DldIAySLLlAhkqW gssgk GUN_CELUD : 112- 126: natdg DtlIAwALLrAqkqW qdkry YHJM_ECOLI : 118- 132: sasdg DvwMAwSLLeAgrlW keqry F 6: 26.0884 9( 9) D-[AG]-D-x(2)-[IM]-A-x(4,5)-A-x(3)-[FW] Occurences: 9(9) GUB_BACCI : 156- 172: adsat DGDmdIAyslllAdkqW gssgs GUN2_CLOJO : 155- 171: igaat DADedIAvslvfAhkkW gtsgg GUNA_ACEXY : 114- 130: knnat DGDllIAlalgrAgkrF qrpdy GUNA_CLOTM : 152- 168: dgaat DADedIAlalifAdklW gssga GUNC_CLOCE : 155- 171: igaat DADedIAvslvfAhkkW gtsgg GUNY_ERWCH : 110- 126: knnas DGDvlIAwallkAgnkW qdnry GUN_BACSP : 191- 207: fdsat DGDldIAyslllAhkqW gssgk GUN_CELUD : 110- 126: knnat DGDtlIAwallrAqkqW qdkry YHJM_ECOLI : 116- 132: snsas DGDvwMAwslleAgrlW keqry G 7: 21.9183 12( 9) A-x(3,4)-D-x(2)-[IM]-A-x(3,5)-A-x(3)-[FW] Occurences: 12(9) GUB_BACCI : 154- 172: egads Atdg-DmdIAyslllAdkqW gssgs GUN2_CLOJO : 152- 171: qnaig AatdaDedIAvslvfAhkkW gtsgg GUN2_CLOJO : 153- 171: naiga Atda-DedIAvslvfAhkkW gtsgg GUNA_ACEXY : 112- 130: pdknn Atdg-DllIAlalgrAgkrF qrpdy GUNA_CLOTM : 149- 168: dggdg AatdaDedIAlalifAdklW gssga GUNA_CLOTM : 150- 168: ggdga Atda-DedIAlalifAdklW gssga GUNC_CLOCE : 152- 171: kdsig AatdaDedIAvslvfAhkkW gtsgg GUNC_CLOCE : 153- 171: dsiga Atda-DedIAvslvfAhkkW gtsgg GUNY_ERWCH : 108- 126: vdknn Asdg-DvlIAwallkAgnkW qdnry GUN_BACSP : 189- 207: ghfds Atdg-DldIAyslllAhkqW gssgk GUN_CELUD : 108- 126: adknn Atdg-DtlIAwallrAqkqW qdkry YHJM_ECOLI : 114- 132: ldsns Asdg-DvwMAwslleAgrlW keqry H 8: 21.6581 9( 9) A-x(2,3)-L-x(2)-A-x(2,3)-W-x-[DEPST]-x(4)-[DNQT]-x(4)-[AGILP] Occurences: 9(9) GUB_BACCI : 162- 184: gdmdi Ays-LllAdkqWgSsgsiNylqaG kdiin GUN2_CLOJO : 161- 183: adedi Avs-LvfAhkkWgTsggfNyqteA knyin GUNA_ACEXY : 228- 250: lavnr AtgaLsiAsg-WpPrfsyDairvP lyfyw GUNA_CLOTM : 158- 180: adedi Ala-LifAdklWgSsgaiNygqeA rtlin GUNC_CLOCE : 161- 183: adedi Avs-LvfAhkkWgTsggfNyqteA knyin GUNY_ERWCH : 116- 138: gdvli Awa-LlkAgnkWqDnrylQasdsI qkaii GUN_BACSP : 197- 219: gdldi Ays-LllAhkqWgSsgkiNylkeA qnmit GUN_CELUD : 116- 138: gdtli Awa-LlrAqkqWqDkryaTasdaI tasll YHJM_ECOLI : 122- 144: gdvwm Aws-LleAgrlWkEqrytDigsaL lkria I 9: 21.3610 9( 9) A-x-[AS]-L-[GILV]-x-A-x(3)-[FW] Occurences: 9(9) GUB_BACCI : 162- 172: gdmdi AySLLlAdkqW gssgs GUN2_CLOJO : 161- 171: adedi AvSLVfAhkkW gtsgg GUNA_ACEXY : 120- 130: gdlli AlALGrAgkrF qrpdy GUNA_CLOTM : 158- 168: adedi AlALIfAdklW gssga GUNC_CLOCE : 161- 171: adedi AvSLVfAhkkW gtsgg GUNY_ERWCH : 116- 126: gdvli AwALLkAgnkW qdnry GUN_BACSP : 197- 207: gdldi AySLLlAhkqW gssgk GUN_CELUD : 116- 126: gdtli AwALLrAqkqW qdkry YHJM_ECOLI : 122- 132: gdvwm AwSLLeAgrlW keqry J 10: 21.2236 9( 9) I-[AV]-x(2)-L-[GILV]-x-A-x(4)-[GQ] Occurences: 9(9) GUB_BACCI : 161- 173: dgdmd IAysLLlAdkqwG ssgsi GUN2_CLOJO : 160- 172: daded IAvsLVfAhkkwG tsggf GUNA_ACEXY : 119- 131: dgdll IAlaLGrAgkrfQ rpdyi GUNA_CLOTM : 157- 169: daded IAlaLIfAdklwG ssgai GUNC_CLOCE : 160- 172: daded IAvsLVfAhkkwG tsggf GUNY_ERWCH : 115- 127: dgdvl IAwaLLkAgnkwQ dnryl GUN_BACSP : 196- 208: dgdld IAysLLlAhkqwG ssgki GUN_CELUD : 115- 127: dgdtl IAwaLLrAqkqwQ dkrya YHJM_ECOLI : 8- 20: vlrsg IVtmLLlAafsvQ aactw K 11: 21.1581 12( 9) A-x(0,2)-L-x(2)-A-x(2,3)-W-x-[DEPST]-x(4)-[DNQT]-x(4)-[AGILP] Occurences: 12(9) GUB_BACCI : 162- 184: gdmdi AysLllAdkqWgSsgsiNylqaG kdiin GUN2_CLOJO : 161- 183: adedi AvsLvfAhkkWgTsggfNyqteA knyin GUNA_ACEXY : 231- 250: nratg A--LsiAsg-WpPrfsyDairvP lyfyw GUNA_CLOTM : 158- 180: adedi AlaLifAdklWgSsgaiNygqeA rtlin GUNA_CLOTM : 160- 180: edial A--LifAdklWgSsgaiNygqeA rtlin GUNC_CLOCE : 161- 183: adedi AvsLvfAhkkWgTsggfNyqteA knyin GUNY_ERWCH : 116- 138: gdvli AwaLlkAgnkWqDnrylQasdsI qkaii GUNY_ERWCH : 118- 138: vliaw A--LlkAgnkWqDnrylQasdsI qkaii GUN_BACSP : 197- 219: gdldi AysLllAhkqWgSsgkiNylkeA qnmit GUN_CELUD : 116- 138: gdtli AwaLlrAqkqWqDkryaTasdaI tasll GUN_CELUD : 118- 138: tliaw A--LlrAqkqWqDkryaTasdaI tasll YHJM_ECOLI : 122- 144: gdvwm AwsLleAgrlWkEqrytDigsaL lkria L 12: 19.4820 11( 9) A-x(1,2)-L-x(1,2)-A-x(3)-W-x-[DEQST]-x(4)-[DGNQT] Occurences: 11(9) GUB_BACCI : 162- 179: gdmdi AysLllAdkqWgSsgsiN ylqag GUN2_CLOJO : 161- 178: adedi AvsLvfAhkkWgTsggfN yqtea GUNA_ACEXY : 188- 204: psllq AfdLt-AdprWrQvmedG irlvs GUNA_CLOTM : 158- 175: adedi AlaLifAdklWgSsgaiN ygqea GUNC_CLOCE : 161- 178: adedi AvsLvfAhkkWgTsggfN yqtea GUNY_ERWCH : 116- 133: gdvli AwaLlkAgnkWqDnrylQ asdsi GUNY_ERWCH : 118- 133: vliaw Al-Lk-AgnkWqDnrylQ asdsi GUN_BACSP : 197- 214: gdldi AysLllAhkqWgSsgkiN ylkea GUN_CELUD : 116- 133: gdtli AwaLlrAqkqWqDkryaT asdai GUN_CELUD : 118- 133: tliaw Al-Lr-AqkqWqDkryaT asdai YHJM_ECOLI : 122- 139: gdvwm AwsLleAgrlWkEqrytD igsal M 13: 16.9194 11( 9) D-G-x(0,2)-D-x(3,5)-A-x(3)-[AILV] Occurences: 11(9) GUB_BACCI : 156- 166: adsat DG--Dmdi--AyslL ladkq GUN2_CLOJO : 410- 424: gdvnn DGaiDaldiaAlkkA iltqs GUN2_CLOJO : 443- 456: admnn DGniDaidf-AqlkV klln GUNA_ACEXY : 114- 126: knnat DG--DllialAlgrA gkrfq GUNA_CLOTM : 144- 157: nvtsh DGg-DgaatdAdedI alali GUNC_CLOCE : 410- 424: gdvnn DGaiDaldiaAlkkA iltqt GUNC_CLOCE : 443- 456: admnn DGniDaidf-AqlkV klln GUNY_ERWCH : 110- 120: knnas DG--Dvli--AwalL kagnk GUNY_ERWCH : 110- 122: knnas DG--DvliawAllkA gnkwq GUN_BACSP : 191- 201: fdsat DG--Dldi--AyslL lahkq GUN_CELUD : 110- 120: knnat DG--Dtli--AwalL raqkq GUN_CELUD : 110- 122: knnat DG--DtliawAllrA qkqwq YHJM_ECOLI : 116- 126: snsas DG--Dvwm--AwslL eagrl N 14: 14.6802 13( 9) D-G-x(2,4)-A-x(3,5)-A Occurences: 13(9) GUB_BACCI : 156- 168: adsat DGdmdiAyslllA dkqwg GUN2_CLOJO : 410- 419: gdvnn DGaid-Aldi--A alkka GUN2_CLOJO : 410- 420: gdvnn DGaid-Aldia-A lkkai GUN2_CLOJO : 443- 452: admnn DGnid-Aidf--A qlkvk GUNA_ACEXY : 114- 126: knnat DGdlliAlalgrA gkrfq GUNA_CLOTM : 144- 153: nvtsh DGgdg-Aatd--A dedia GUNA_CLOTM : 147- 158: shdgg DGaatdAdedi-A lalif GUNC_CLOCE : 410- 419: gdvnn DGaid-Aldi--A alkka GUNC_CLOCE : 410- 420: gdvnn DGaid-Aldia-A lkkai GUNC_CLOCE : 443- 452: admnn DGnid-Aidf--A qlkvk GUNY_ERWCH : 110- 122: knnas DGdvliAwallkA gnkwq GUNY_ERWCH : 224- 232: aalna DGsm--Apat--A wpsrf GUN_BACSP : 191- 203: fdsat DGdldiAyslllA hkqwg GUN_CELUD : 110- 122: knnat DGdtliAwallrA qkqwq YHJM_ECOLI : 116- 128: snsas DGdvwmAwslleA grlwk O 15: 14.6802 14( 9) D-x(0,2)-I-x(0,2)-A-x(5)-A Occurences: 14(9) GUB_BACCI : 158- 168: satdg DmdI--AyslllA dkqwg GUB_BACCI : 160- 168: tdgdm D--I--AyslllA dkqwg GUN2_CLOJO : 157- 167: aatda DedI--AvslvfA hkkwg GUN2_CLOJO : 159- 167: tdade D--I--AvslvfA hkkwg GUNA_ACEXY : 116- 126: natdg DllI--AlalgrA gkrfq GUNA_CLOTM : 154- 164: aatda DedI--AlalifA dklwg GUNA_CLOTM : 156- 164: tdade D--I--AlalifA dklwg GUNC_CLOCE : 157- 167: aatda DedI--AvslvfA hkkwg GUNC_CLOCE : 159- 167: tdade D--I--AvslvfA hkkwg GUNY_ERWCH : 112- 122: nasdg DvlI--AwallkA gnkwq GUN_BACSP : 193- 203: satdg DldI--AyslllA hkqwg GUN_BACSP : 195- 203: tdgdl D--I--AyslllA hkqwg GUN_CELUD : 112- 122: natdg DtlI--AwallrA qkqwq YHJM_ECOLI : 139- 149: eqryt D--IgsAllkriA reevv P 16: 14.6802 9( 9) G-D-x(3,5)-A-x(2,4)-L Occurences: 9(9) GUB_BACCI : 157- 165: dsatd GDmdi--Ays--L lladk GUB_BACCI : 157- 166: dsatd GDmdi--Aysl-L ladkq GUB_BACCI : 157- 167: dsatd GDmdi--AysllL adkqw GUN2_CLOJO : 405- 416: qqglk GDvnndgAida-L diaal GUNA_ACEXY : 115- 123: nnatd GDlli--Ala--L gragk GUNA_CLOTM : 294- 305: dyswf GDqrak-AncdmL tkffa GUNC_CLOCE : 405- 416: kpdlk GDvnndgAida-L diaal GUNY_ERWCH : 111- 119: nnasd GDvli--Awa--L lkagn GUNY_ERWCH : 111- 120: nnasd GDvli--Awal-L kagnk GUN_BACSP : 192- 200: dsatd GDldi--Ays--L llahk GUN_BACSP : 192- 201: dsatd GDldi--Aysl-L lahkq GUN_BACSP : 192- 202: dsatd GDldi--AysllL ahkqw GUN_CELUD : 111- 119: nnatd GDtli--Awa--L lraqk GUN_CELUD : 111- 120: nnatd GDtli--Awal-L raqkq YHJM_ECOLI : 117- 125: nsasd GDvwm--Aws--L leagr YHJM_ECOLI : 117- 126: nsasd GDvwm--Awsl-L eagrl Q 17: 14.6292 10( 9) D-x(0,1)-I-x(2)-[APS]-L Occurences: 10(9) GUB_BACCI : 160- 165: tdgdm D-IaySL lladk GUN2_CLOJO : 159- 164: tdade D-IavSL vfahk GUNA_ACEXY : 245- 251: prfsy DaIrvPL yfywa GUNA_CLOTM : 156- 161: tdade D-IalAL ifadk GUNC_CLOCE : 159- 164: tdade D-IavSL vfahk GUNY_ERWCH : 240- 246: srfsy DaIriPL ylywy GUN_BACSP : 195- 200: tdgdl D-IaySL llahk GUN_CELUD : 136- 142: yatas DaItaSL lkytv GUN_CELUD : 240- 246: prmsf DaIriPL yiswv YHJM_ECOLI : 139- 144: eqryt D-IgsAL lkria R 18: 14.2508 9( 9) L-x(2,3)-D-W-x-[ADQT] Occurences: 9(9) GUB_BACCI : 203- 210: qsqwt LrlgDWaT dntfk GUN2_CLOJO : 257- 263: nsntg Lvp-DWcT angtp GUNA_ACEXY : 218- 224: fgqwr Lpp-DWlA vnrat GUNA_CLOTM : 256- 262: nngtg Lvp-DWcT asgtp GUNC_CLOCE : 257- 263: nsntg Lvp-DWcT angtp GUNY_ERWCH : 214- 220: fgqvg Lpt-DWaA lnadg GUN_BACSP : 238- 245: tknng LnlgDWgD kstfd GUN_CELUD : 214- 220: wgksh Lps-DWvA lradg YHJM_ECOLI : 356- 362: stkge Llp-DWgQ ecans S 19: 14.2003 12( 9) G-x(1,2)-L-x(5)-L-x(2)-[AGST] Occurences: 12(9) GUB_BACCI : 263- 274: yssst Gl-LpdfvvLsgS tykpa GUN2_CLOJO : 374- 386: nytyf GntLrmmilLytT gnfpn GUNA_ACEXY : 115- 126: nnatd Gd-LlialaLgrA gkrfq GUNA_CLOTM : 373- 385: yygyy GnsLrlltlLyiT gnfpn GUNC_CLOCE : 4- 16: mik GssLkrfksLvmA aifsv GUNC_CLOCE : 374- 386: nytyf GntLrmmvlLytT gnfpn GUNY_ERWCH : 111- 123: nnasd GdvLiawalLkaG nkwqd GUNY_ERWCH : 291- 302: tynmq Gg-LlavrdLtmG nldgl GUNY_ERWCH : 302- 313: rdltm Gn-LdglsdLpgA sedyy GUN_BACSP : 192- 203: dsatd Gd-LdiaysLllA hkqwg GUN_CELUD : 291- 302: pwnma Gg-LlavrdLtlG epler YHJM_ECOLI : 229- 241: yekdk GwqLkaektLisS ydair T 20: 13.6624 11( 9) A-x(3,4)-A-[DGNQST]-G Occurences: 11(9) GUB_BACCI : 230- 236: lnhlk Afqa-ATG darwa GUN2_CLOJO : 264- 271: pdwct AngtpASG qgydf GUNA_ACEXY : 224- 230: ppdwl Avnr-ATG alsia GUNA_ACEXY : 231- 237: nratg Alsi-ASG wpprf GUNA_CLOTM : 263- 270: pdwct AsgtpASG qsydy GUNC_CLOCE : 264- 271: pdwct AngtpASG qgfdf GUNY_ERWCH : 19- 26: mvwfs AsataANG weiyk GUNY_ERWCH : 219- 225: lptdw Aaln-ADG smapa GUN_BACSP : 177- 184: mgwvv AddkkAQG hfdsa GUN_CELUD : 285- 292: stnev ApwnmAGG llavr YHJM_ECOLI : 288- 294: ekvdv Atgk-AQG kgpvg Number of patterns evaluated by Pratt:5315 Total running time: 4 seconds