------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file GLYCOSYL_HYDROL_F6_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GLYCOSYL_HYDROL_F6_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: GUN1_STRHA 321 GUN1_STRSQ 359 GUN2_THEFU 426 GUNA_CELFI 449 GUNA_MICBI 456 GUNB_FUSOX 462 GUX2_TRIRE 471 Pratt run started at Thu Feb 6 19:41:34 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 28.1904 7( 7) W-x-K-x(0,1)-P-G-x(0,1)-E-x-D-G 2: 28.1904 7( 7) V-x-Y-x(4)-R-D-x(0,1)-C-x(3,4)-S-x-G 3: 24.5203 7( 7) G-x(4)-G-x(1,2)-W-C-x(3)-G-x(3)-G 4: 24.0203 7( 7) K-x(0,1)-P-G-x(0,1)-E-x-D-G 5: 24.0203 7( 7) Y-x(4)-R-D-x(0,1)-C-x(3,4)-S-x-G 6: 23.5203 12( 7) G-x(2,4)-G-x(1,2)-W-C-x(3)-G-x(3)-G 7: 20.3503 7( 7) P-G-x(0,1)-E-x-D-G 8: 20.3503 8( 7) P-x(0,1)-G-E-x-D-G 9: 20.3503 7( 7) G-x(1,2)-W-C-x(3)-G-x(3)-G 10: 19.8503 7( 7) R-D-x(0,1)-C-x(3,4)-S-x-G 11: 19.8503 10( 7) A-x(3)-A-A-x(0,1)-A-x(1,2)-A 12: 19.3503 9( 7) A-x(0,1)-A-A-A-x(0,2)-A 13: 18.8503 11( 7) A-x(1,3)-L-x(2)-A-x-A-x(1,3)-A 14: 16.6802 7( 7) G-E-x-D-G 15: 16.6802 7( 7) W-C-x(3)-G-x(3)-G 16: 16.6802 8( 7) W-x(2)-P-x-G-x(3)-G 17: 16.6802 7( 7) D-x(2)-R-x-G-x(4)-G 18: 16.6802 7( 7) G-x(3)-N-x(2)-N-Y 19: 16.1802 12( 7) A-x(3)-A-A-x(2,3)-A 20: 16.1802 13( 7) A-x(3)-A-x(0,1)-A-x(2)-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 81.1955 7( 7) G-[NQ]-x(3)-G-x(1,2)-W-C-[DN]-[APV]-x-G-x(3)-G-x(2)-[PST]-x-[ATV]-[DGNV]-[GNPT]-[DG]-[ADGV]-x(2)-[AILV]-x(2)-[FIL]-x(2)-[IPV]-x(2)-[GPS]-[DG]-[EG]-x-[CD]-G-[ACTV]-x-[ADGNS]-[GPST]-x-[AGPT] B 2: 77.0249 12( 7) G-x(2,4)-G-x(1,2)-W-C-[DN]-[APV]-x-G-x(3)-G-x(2)-[PST]-x-[ATV]-[DGNV]-[GNPT]-[DG]-[ADGV]-x(2)-[AILV]-x(2)-[FIL]-x(2)-[IPV]-x(2)-[GPS]-[DG]-[EG]-x-[CD]-G-[ACTV]-x-[ADGNS]-[GPST]-x-[AGPT] C 3: 73.8549 7( 7) G-x(1,2)-W-C-[DN]-[APV]-x-G-x(3)-G-x(2)-[PST]-x-[ATV]-[DGNV]-[GNPT]-[DG]-[ADGV]-x(2)-[AILV]-x(2)-[FIL]-x(2)-[IPV]-x(2)-[GPS]-[DG]-[EG]-x-[CD]-G-[ACTV]-x-[ADGNS]-[GPST]-x-[AGPT] D 4: 70.1848 7( 7) W-C-[DN]-[APV]-x-G-x(3)-G-x(2)-[PST]-x-[ATV]-[DGNV]-[GNPT]-[DG]-[ADGV]-x(2)-[AILV]-x(2)-[FIL]-x(2)-[IPV]-x(2)-[GPS]-[DG]-[EG]-x-[CD]-G-[ACTV]-x-[ADGNS]-[GPST]-x-[AGPT] E 5: 55.9739 7( 7) W-[CV]-x-P-x-G-[ER]-x(2)-G-[ENT]-x-[DPST]-x-[ASTV]-[ADGNV]-[AGNPT]-x(2)-[DEPS]-x(4)-[FIL]-x(2)-[AIPV]-x(2)-[PS]-[ADG]-x(2)-[ACD]-G-[ACTV] F 6: 49.9105 7( 7) D-[QT]-[GS]-R-[NS]-G-x-[GQ]-[PS]-x-G-[ENQS]-x(3)-[DGP]-x(4)-[AILV]-x-[EGT]-x(3)-[AGT]-x(2)-[DGPT]-[AGS] G 7: 38.7218 7( 7) V-[APV]-Y-x(4)-R-D-x(0,1)-C-x(3,4)-S-[AGN]-G-[AEG]-x-[APS] H 8: 38.1419 7( 7) W-[IV]-K-x(0,1)-P-G-x(0,1)-E-x-D-G-[ACNT]-x-[ADGN]-x(2)-[AGPS] I 9: 31.9313 7( 7) Y-x(4)-R-D-x(0,1)-C-x(3,4)-S-[AGN]-G-[AEG]-x-[APS] J 10: 30.7470 7( 7) K-x(0,1)-P-G-x(0,1)-E-x-D-G-[ACNT]-x-[ADGN]-x(2)-[AGPS] K 11: 27.7612 7( 7) R-D-x(0,1)-C-x(3,4)-S-[AGN]-G-[AEG]-x-[APS] L 12: 27.0769 7( 7) P-G-x(0,1)-E-x-D-G-[ACNT]-x-[ADGN]-x(2)-[AGPS] M 13: 27.0769 8( 7) P-x(0,1)-G-E-x-D-G-[ACNT]-x-[ADGN]-x(2)-[AGPS] N 14: 26.6408 7( 7) V-[APV]-Y-x(4)-R-D-x(0,1)-C-x(3,4)-S O 15: 26.1444 10( 7) A-x(1,3)-L-x(2)-A-x-A-x(1,3)-A-x-[AGPV]-[AGSTV]-x(2)-[AP] P 16: 25.1559 7( 7) G-[FIL]-[ASV]-x-N-x-[AS]-N-Y Q 17: 23.4069 7( 7) G-E-x-D-G-[ACNT]-x-[ADGN]-x(2)-[AGPS] R 18: 22.0558 9( 7) A-x(3)-A-A-x(0,1)-A-x(1,2)-A-x-[AGPV] S 19: 20.5723 7( 7) A-x-[AGLV]-[AGPT]-A-A-x(2,3)-A T 20: 20.2397 10( 7) A-x-[AGLV]-x-A-x(0,1)-A-x-[AGLPV]-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 81.1955 7( 7) G-[NQ]-x(3)-G-x(1,2)-W-C-[DN]-[APV]-x-G-x(3)-G-x(2)-[PST]-x-[ATV]-[DGNV]-[GNPT]-[DG]-[ADGV]-x(2)-[AILV]-x(2)-[FIL]-x(2)-[IPV]-x(2)-[GPS]-[DG]-[EG]-x-[CD]-G-[ACTV]-x-[ADGNS]-[GPST]-x-[AGPT] Occurences: 7(7) GUN1_STRHA : 257- 305: dtsrn GNgsnGe-WCNPsGrriGtpTrTGGGAemLlwIktPgeSDGnCGVgSGsT agqfl GUN1_STRSQ : 297- 346: dtsrn GNgplGseWCDPpGrlvGnnPtVNPGVpgVdaFlwIklPGElDGCdGPvG sfspa GUN2_THEFU : 254- 303: dtsrn GNgpaGneWCDPsGraiGtpStTNTGDpmIdaFlwIklPGEaDGCiAGaG qfvpq GUNA_CELFI : 382- 430: dtsrn GNgsnGe-WCNPrGralGerPvAVNDGsgLdaLlwVklPGEsDGAcNGgP aagqw GUNA_MICBI : 258- 307: dtsrn GNgplGseWCDPpGratGtwStTDTGDpaIdaFlwIkpPGEaDGCiATpG vfvpd GUNB_FUSOX : 375- 423: gkqpt GQkaqGd-WCNAkGtgfGlrPsTNTGDalAdaFvwVkpGGEsDGTsDTsA arydy GUX2_TRIRE : 384- 432: gkqpt GQqqwGd-WCNViGtgfGirPsANTGDslLdsFvwVkpGGEcDGTsDSsA prfds B 2: 77.0249 12( 7) G-x(2,4)-G-x(1,2)-W-C-[DN]-[APV]-x-G-x(3)-G-x(2)-[PST]-x-[ATV]-[DGNV]-[GNPT]-[DG]-[ADGV]-x(2)-[AILV]-x(2)-[FIL]-x(2)-[IPV]-x(2)-[GPS]-[DG]-[EG]-x-[CD]-G-[ACTV]-x-[ADGNS]-[GPST]-x-[AGPT] Occurences: 12(7) GUN1_STRHA : 257- 305: dtsrn GngsnGe-WCNPsGrriGtpTrTGGGAemLlwIktPgeSDGnCGVgSGsT agqfl GUN1_STRHA : 259- 305: srngn Gsn--Ge-WCNPsGrriGtpTrTGGGAemLlwIktPgeSDGnCGVgSGsT agqfl GUN1_STRSQ : 297- 346: dtsrn GngplGseWCDPpGrlvGnnPtVNPGVpgVdaFlwIklPGElDGCdGPvG sfspa GUN1_STRSQ : 299- 346: srngn Gpl--GseWCDPpGrlvGnnPtVNPGVpgVdaFlwIklPGElDGCdGPvG sfspa GUN2_THEFU : 254- 303: dtsrn GngpaGneWCDPsGraiGtpStTNTGDpmIdaFlwIklPGEaDGCiAGaG qfvpq GUN2_THEFU : 256- 303: srngn Gpa--GneWCDPsGraiGtpStTNTGDpmIdaFlwIklPGEaDGCiAGaG qfvpq GUNA_CELFI : 382- 430: dtsrn GngsnGe-WCNPrGralGerPvAVNDGsgLdaLlwVklPGEsDGAcNGgP aagqw GUNA_CELFI : 384- 430: srngn Gsn--Ge-WCNPrGralGerPvAVNDGsgLdaLlwVklPGEsDGAcNGgP aagqw GUNA_MICBI : 258- 307: dtsrn GngplGseWCDPpGratGtwStTDTGDpaIdaFlwIkpPGEaDGCiATpG vfvpd GUNA_MICBI : 260- 307: srngn Gpl--GseWCDPpGratGtwStTDTGDpaIdaFlwIkpPGEaDGCiATpG vfvpd GUNB_FUSOX : 375- 423: gkqpt GqkaqGd-WCNAkGtgfGlrPsTNTGDalAdaFvwVkpGGEsDGTsDTsA arydy GUX2_TRIRE : 384- 432: gkqpt GqqqwGd-WCNViGtgfGirPsANTGDslLdsFvwVkpGGEcDGTsDSsA prfds C 3: 73.8549 7( 7) G-x(1,2)-W-C-[DN]-[APV]-x-G-x(3)-G-x(2)-[PST]-x-[ATV]-[DGNV]-[GNPT]-[DG]-[ADGV]-x(2)-[AILV]-x(2)-[FIL]-x(2)-[IPV]-x(2)-[GPS]-[DG]-[EG]-x-[CD]-G-[ACTV]-x-[ADGNS]-[GPST]-x-[AGPT] Occurences: 7(7) GUN1_STRHA : 262- 305: gngsn Ge-WCNPsGrriGtpTrTGGGAemLlwIktPgeSDGnCGVgSGsT agqfl GUN1_STRSQ : 302- 346: gngpl GseWCDPpGrlvGnnPtVNPGVpgVdaFlwIklPGElDGCdGPvG sfspa GUN2_THEFU : 259- 303: gngpa GneWCDPsGraiGtpStTNTGDpmIdaFlwIklPGEaDGCiAGaG qfvpq GUNA_CELFI : 387- 430: gngsn Ge-WCNPrGralGerPvAVNDGsgLdaLlwVklPGEsDGAcNGgP aagqw GUNA_MICBI : 263- 307: gngpl GseWCDPpGratGtwStTDTGDpaIdaFlwIkpPGEaDGCiATpG vfvpd GUNB_FUSOX : 380- 423: gqkaq Gd-WCNAkGtgfGlrPsTNTGDalAdaFvwVkpGGEsDGTsDTsA arydy GUX2_TRIRE : 389- 432: gqqqw Gd-WCNViGtgfGirPsANTGDslLdsFvwVkpGGEcDGTsDSsA prfds D 4: 70.1848 7( 7) W-C-[DN]-[APV]-x-G-x(3)-G-x(2)-[PST]-x-[ATV]-[DGNV]-[GNPT]-[DG]-[ADGV]-x(2)-[AILV]-x(2)-[FIL]-x(2)-[IPV]-x(2)-[GPS]-[DG]-[EG]-x-[CD]-G-[ACTV]-x-[ADGNS]-[GPST]-x-[AGPT] Occurences: 7(7) GUN1_STRHA : 264- 305: gsnge WCNPsGrriGtpTrTGGGAemLlwIktPgeSDGnCGVgSGsT agqfl GUN1_STRSQ : 305- 346: plgse WCDPpGrlvGnnPtVNPGVpgVdaFlwIklPGElDGCdGPvG sfspa GUN2_THEFU : 262- 303: pagne WCDPsGraiGtpStTNTGDpmIdaFlwIklPGEaDGCiAGaG qfvpq GUNA_CELFI : 389- 430: gsnge WCNPrGralGerPvAVNDGsgLdaLlwVklPGEsDGAcNGgP aagqw GUNA_MICBI : 266- 307: plgse WCDPpGratGtwStTDTGDpaIdaFlwIkpPGEaDGCiATpG vfvpd GUNB_FUSOX : 382- 423: kaqgd WCNAkGtgfGlrPsTNTGDalAdaFvwVkpGGEsDGTsDTsA arydy GUX2_TRIRE : 391- 432: qqwgd WCNViGtgfGirPsANTGDslLdsFvwVkpGGEcDGTsDSsA prfds E 5: 55.9739 7( 7) W-[CV]-x-P-x-G-[ER]-x(2)-G-[ENT]-x-[DPST]-x-[ASTV]-[ADGNV]-[AGNPT]-x(2)-[DEPS]-x(4)-[FIL]-x(2)-[AIPV]-x(2)-[PS]-[ADG]-x(2)-[ACD]-G-[ACTV] Occurences: 7(7) GUN1_STRHA : 264- 300: gsnge WCnPsGRriGTpTrTGGgaEmllwIktPgeSDgnCGV gsgst GUN1_STRSQ : 305- 341: plgse WCdPpGRlvGNnPtVNPgvPgvdaFlwIklPGelDGC dgpvg GUN2_THEFU : 262- 298: pagne WCdPsGRaiGTpStTNTgdPmidaFlwIklPGeaDGC iagag GUNA_CELFI : 389- 425: gsnge WCnPrGRalGErPvAVNdgSgldaLlwVklPGesDGA cnggp GUNA_MICBI : 266- 302: plgse WCdPpGRatGTwStTDTgdPaidaFlwIkpPGeaDGC iatpg GUNB_FUSOX : 408- 444: adafv WVkPgGEsdGTsDtSAAryDyhcgLddAlkPApeAGT wfqay GUX2_TRIRE : 417- 453: ldsfv WVkPgGEcdGTsDsSAPrfDshcaLpdAlqPApqAGA wfqay F 6: 49.9105 7( 7) D-[QT]-[GS]-R-[NS]-G-x-[GQ]-[PS]-x-G-[ENQS]-x(3)-[DGP]-x(4)-[AILV]-x-[EGT]-x(3)-[AGT]-x(2)-[DGPT]-[AGS] Occurences: 7(7) GUN1_STRHA : 252- 282: kpfvv DTSRNGnGSnGEwcnPsgrrIgTptrTggGA emllw GUN1_STRSQ : 292- 322: lgavv DTSRNGnGPlGSewcDppgrLvGnnpTvnPG vpgvd GUN2_THEFU : 249- 279: lravi DTSRNGnGPaGNewcDpsgrAiGtpsTtnTG dpmid GUNA_CELFI : 377- 407: kkfvi DTSRNGnGSnGEwcnPrgraLgErpvAvnDG sglda GUNA_MICBI : 253- 283: lravi DTSRNGnGPlGSewcDppgrAtGtwsTtdTG dpaid GUNB_FUSOX : 365- 395: vkfiv DQGRSGkQPtGQkaqGdwcnAkGtgfGlrPS tntgd GUX2_TRIRE : 374- 404: affit DQGRSGkQPtGQqqwGdwcnViGtgfGirPS antgd G 7: 38.7218 7( 7) V-[APV]-Y-x(4)-R-D-x(0,1)-C-x(3,4)-S-[AGN]-G-[AEG]-x-[APS] Occurences: 7(7) GUN1_STRHA : 102- 121: klpil VAYniynRDyCggh-SAGGaA spsay GUN1_STRSQ : 146- 164: qlpvv VPYmipfRD-Cgnh-SGGGaP sfaay GUN2_THEFU : 102- 121: kipil VVYnapgRD-CgnhsSGGApS hsayr GUNA_CELFI : 239- 257: ktpml VVYaipgRD-Cgsh-SGGGvS eseya GUNA_MICBI : 105- 123: kipim VVYampnRD-Cggp-SAGGaP nhtay GUNB_FUSOX : 182- 201: yagqf VVYdlpnRD-CaaaaSNGEyS ldkdg GUX2_TRIRE : 191- 210: yagqf VVYdlpdRD-CaalaSNGEyS iadgg H 8: 38.1419 7( 7) W-[IV]-K-x(0,1)-P-G-x(0,1)-E-x-D-G-[ACNT]-x-[ADGN]-x(2)-[AGPS] Occurences: 7(7) GUN1_STRHA : 287- 302: aemll WIKtPG-EsDGNcGvgS gstag GUN1_STRSQ : 331- 346: vdafl WIKlPG-ElDGCdGpvG sfspa GUN2_THEFU : 288- 303: idafl WIKlPG-EaDGCiAgaG qfvpq GUNA_CELFI : 415- 430: ldall WVKlPG-EsDGAcNggP aagqw GUNA_MICBI : 292- 307: idafl WIKpPG-EaDGCiAtpG vfvpd GUNB_FUSOX : 408- 423: adafv WVK-PGgEsDGTsDtsA arydy GUX2_TRIRE : 417- 432: ldsfv WVK-PGgEcDGTsDssA prfds I 9: 31.9313 7( 7) Y-x(4)-R-D-x(0,1)-C-x(3,4)-S-[AGN]-G-[AEG]-x-[APS] Occurences: 7(7) GUN1_STRHA : 104- 121: pilva YniynRDyCggh-SAGGaA spsay GUN1_STRSQ : 148- 164: pvvvp YmipfRD-Cgnh-SGGGaP sfaay GUN2_THEFU : 104- 121: pilvv YnapgRD-CgnhsSGGApS hsayr GUNA_CELFI : 241- 257: pmlvv YaipgRD-Cgsh-SGGGvS eseya GUNA_MICBI : 107- 123: pimvv YampnRD-Cggp-SAGGaP nhtay GUNB_FUSOX : 184- 201: gqfvv YdlpnRD-CaaaaSNGEyS ldkdg GUX2_TRIRE : 193- 210: gqfvv YdlpdRD-CaalaSNGEyS iadgg J 10: 30.7470 7( 7) K-x(0,1)-P-G-x(0,1)-E-x-D-G-[ACNT]-x-[ADGN]-x(2)-[AGPS] Occurences: 7(7) GUN1_STRHA : 289- 302: mllwi KtPG-EsDGNcGvgS gstag GUN1_STRSQ : 333- 346: aflwi KlPG-ElDGCdGpvG sfspa GUN2_THEFU : 290- 303: aflwi KlPG-EaDGCiAgaG qfvpq GUNA_CELFI : 417- 430: allwv KlPG-EsDGAcNggP aagqw GUNA_MICBI : 294- 307: aflwi KpPG-EaDGCiAtpG vfvpd GUNB_FUSOX : 410- 423: afvwv K-PGgEsDGTsDtsA arydy GUX2_TRIRE : 419- 432: sfvwv K-PGgEcDGTsDssA prfds K 11: 27.7612 7( 7) R-D-x(0,1)-C-x(3,4)-S-[AGN]-G-[AEG]-x-[APS] Occurences: 7(7) GUN1_STRHA : 109- 121: yniyn RDyCggh-SAGGaA spsay GUN1_STRSQ : 153- 164: ymipf RD-Cgnh-SGGGaP sfaay GUN2_THEFU : 109- 121: ynapg RD-CgnhsSGGApS hsayr GUNA_CELFI : 246- 257: yaipg RD-Cgsh-SGGGvS eseya GUNA_MICBI : 112- 123: yampn RD-Cggp-SAGGaP nhtay GUNB_FUSOX : 189- 201: ydlpn RD-CaaaaSNGEyS ldkdg GUX2_TRIRE : 198- 210: ydlpd RD-CaalaSNGEyS iadgg L 12: 27.0769 7( 7) P-G-x(0,1)-E-x-D-G-[ACNT]-x-[ADGN]-x(2)-[AGPS] Occurences: 7(7) GUN1_STRHA : 291- 302: lwikt PG-EsDGNcGvgS gstag GUN1_STRSQ : 335- 346: lwikl PG-ElDGCdGpvG sfspa GUN2_THEFU : 292- 303: lwikl PG-EaDGCiAgaG qfvpq GUNA_CELFI : 419- 430: lwvkl PG-EsDGAcNggP aagqw GUNA_MICBI : 296- 307: lwikp PG-EaDGCiAtpG vfvpd GUNB_FUSOX : 411- 423: fvwvk PGgEsDGTsDtsA arydy GUX2_TRIRE : 420- 432: fvwvk PGgEcDGTsDssA prfds M 13: 27.0769 8( 7) P-x(0,1)-G-E-x-D-G-[ACNT]-x-[ADGN]-x(2)-[AGPS] Occurences: 8(7) GUN1_STRHA : 291- 302: lwikt P-GEsDGNcGvgS gstag GUN1_STRSQ : 335- 346: lwikl P-GElDGCdGpvG sfspa GUN2_THEFU : 292- 303: lwikl P-GEaDGCiAgaG qfvpq GUNA_CELFI : 419- 430: lwvkl P-GEsDGAcNggP aagqw GUNA_MICBI : 295- 307: flwik PpGEaDGCiAtpG vfvpd GUNA_MICBI : 296- 307: lwikp P-GEaDGCiAtpG vfvpd GUNB_FUSOX : 411- 423: fvwvk PgGEsDGTsDtsA arydy GUX2_TRIRE : 420- 432: fvwvk PgGEcDGTsDssA prfds N 14: 26.6408 7( 7) V-[APV]-Y-x(4)-R-D-x(0,1)-C-x(3,4)-S Occurences: 7(7) GUN1_STRHA : 102- 116: klpil VAYniynRDyCggh-S aggaa GUN1_STRSQ : 146- 159: qlpvv VPYmipfRD-Cgnh-S gggap GUN2_THEFU : 102- 115: kipil VVYnapgRD-Cgnh-S sggap GUN2_THEFU : 102- 116: kipil VVYnapgRD-CgnhsS ggaps GUNA_CELFI : 239- 252: ktpml VVYaipgRD-Cgsh-S gggvs GUNA_MICBI : 105- 118: kipim VVYampnRD-Cggp-S aggap GUNB_FUSOX : 182- 196: yagqf VVYdlpnRD-CaaaaS ngeys GUX2_TRIRE : 191- 205: yagqf VVYdlpdRD-CaalaS ngeys O 15: 26.1444 10( 7) A-x(1,3)-L-x(2)-A-x-A-x(1,3)-A-x-[AGPV]-[AGSTV]-x(2)-[AP] Occurences: 10(7) GUN1_STRHA : 11- 28: rtlma AlcaLplAfAa--ApPAhaA dpttm GUN1_STRSQ : 38- 55: gvtll Ag--LaiApAatgAsPSpaP paspa GUN2_THEFU : 13- 30: allga AaaaLvsAaAl--AfPSqaA andsp GUN2_THEFU : 14- 30: llgaa Aaa-LvsAaAl--AfPSqaA andsp GUN2_THEFU : 15- 30: lgaaa Aa--LvsAaAl--AfPSqaA andsp GUNA_CELFI : 7- 23: strrt Aaa-LlaAaAv--AvGGltA lttta GUNA_CELFI : 8- 23: trrta Aa--LlaAaAv--AvGGltA lttta GUNA_MICBI : 9- 27: irrfl Ata-LaaAtAgvgAiVTaiA sagpa GUNB_FUSOX : 127- 146: evmnl AvpkLsgAkAtaaAkVAdvP sfqwm GUX2_TRIRE : 136- 155: evssl AipsLtgAmAtaaAaVAkvP sfmwl P 16: 25.1559 7( 7) G-[FIL]-[ASV]-x-N-x-[AS]-N-Y Occurences: 7(7) GUN1_STRHA : 214- 222: lrqah GFSlNvSNY ittae GUN1_STRSQ : 258- 266: lehga GIAtNiSNY rtttd GUN2_THEFU : 214- 222: snsah GIAtNtSNY rwtad GUNA_CELFI : 344- 352: feyav GFAlNtSNY qttad GUNA_MICBI : 218- 226: ansad GIAlNvSNY rytsg GUNB_FUSOX : 313- 321: psrvr GLVtNvSNY ngwkl GUX2_TRIRE : 322- 330: pralr GLAtNvANY ngwni Q 17: 23.4069 7( 7) G-E-x-D-G-[ACNT]-x-[ADGN]-x(2)-[AGPS] Occurences: 7(7) GUN1_STRHA : 292- 302: wiktp GEsDGNcGvgS gstag GUN1_STRSQ : 336- 346: wiklp GElDGCdGpvG sfspa GUN2_THEFU : 293- 303: wiklp GEaDGCiAgaG qfvpq GUNA_CELFI : 420- 430: wvklp GEsDGAcNggP aagqw GUNA_MICBI : 297- 307: wikpp GEaDGCiAtpG vfvpd GUNB_FUSOX : 413- 423: wvkpg GEsDGTsDtsA arydy GUX2_TRIRE : 422- 432: wvkpg GEcDGTsDssA prfds R 18: 22.0558 9( 7) A-x(3)-A-A-x(0,1)-A-x(1,2)-A-x-[AGPV] Occurences: 9(7) GUN1_STRHA : 80- 91: gswsg AigtAAgAy-AgA adgrd GUN1_STRSQ : 206- 218: dnqqr AerlAAlAglAeA vtdan GUN2_THEFU : 8- 18: prplr AllgAA-Aa-AlV saaal GUN2_THEFU : 16- 26: gaaaa AlvsAA-Al-AfP sqaaa GUNA_CELFI : 8- 19: trrta AallAAaAv-AvG gltal GUNA_CELFI : 8- 19: trrta AallAA-AavAvG gltal GUNA_CELFI : 9- 19: rrtaa AllaAA-Av-AvG gltal GUNA_MICBI : 9- 19: irrfl AtalAA-At-AgV gaivt GUNB_FUSOX : 134- 145: pklsg AkatAA-AkvAdV psfqw GUX2_TRIRE : 143- 154: psltg AmatAAaAv-AkV psfmw GUX2_TRIRE : 143- 154: psltg AmatAA-AavAkV psfmw S 19: 20.5723 7( 7) A-x-[AGLV]-[AGPT]-A-A-x(2,3)-A Occurences: 7(7) GUN1_STRHA : 80- 89: gswsg AiGTAAgayA gaadg GUN1_STRSQ : 41- 49: llagl AiAPAAtg-A spspa GUN2_THEFU : 8- 16: prplr AlLGAAaa-A lvsaa GUNA_CELFI : 9- 17: rrtaa AlLAAAav-A vgglt GUNA_MICBI : 90- 98: raevd AyVGAAaa-A gkipi GUNB_FUSOX : 134- 143: pklsg AkATAAakvA dvpsf GUX2_TRIRE : 143- 152: psltg AmATAAaavA kvpsf T 20: 20.2397 10( 7) A-x-[AGLV]-x-A-x(0,1)-A-x-[AGLPV]-A Occurences: 10(7) GUN1_STRHA : 134- 142: wiarf AgGiA-ArPA vvile GUN1_STRSQ : 41- 49: llagl AiApA-AtGA spspa GUN2_THEFU : 8- 16: prplr AlLgA-AaAA lvsaa GUN2_THEFU : 16- 24: gaaaa AlVsA-AaLA fpsqa GUNA_CELFI : 8- 17: trrta AaLlAaAaVA vgglt GUNA_CELFI : 9- 17: rrtaa AlLaA-AaVA vgglt GUNA_MICBI : 90- 98: raevd AyVgA-AaAA gkipi GUNA_MICBI : 166- 175: spseq AeVqAsAvGA gkkfk GUNB_FUSOX : 134- 143: pklsg AkAtAaAkVA dvpsf GUX2_TRIRE : 143- 152: psltg AmAtAaAaVA kvpsf Number of patterns evaluated by Pratt:10615 Total running time: 6 seconds