------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 4 sequences from file GLYCOSYL_HYDROL_F45 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 4 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GLYCOSYL_HYDROL_F45.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: GUN5_HUMIN 213 GUN5_TRIRE 242 GUNB_PSEFL 511 GUNK_FUSOX 376 Pratt run started at Thu Feb 6 19:41:24 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 24.0203 4( 4) Q-x(4)-G-x(0,1)-D-x(5)-F-x(4,5)-P-G 2: 20.8503 4( 4) T-R-Y-x-D-x(5)-C 3: 19.8503 4( 4) G-x(5)-L-x(3,4)-G-G-x(0,1)-G 4: 19.8503 4( 4) M-x(1,2)-Q-x(4)-G-x(0,1)-D-x(5)-F 5: 19.8503 4( 4) C-x(2)-C-Y-x-L-x(0,2)-T 6: 19.8503 4( 4) A-x(1,2)-G-x-A-A-x(3,4)-G 7: 19.8503 4( 4) V-x(4,5)-A-x(1,2)-G-x-A-A 8: 19.8503 4( 4) G-x(2,3)-T-x(4)-C-x(2)-P-x(1,2)-C 9: 19.8503 4( 4) G-x(1,2)-T-x(4)-C-x(2)-P-x(1,2)-C 10: 19.3503 4( 4) P-x(2,3)-G-x-G-x(1,3)-G-x(5)-G 11: 19.3503 4( 4) G-x(0,1)-K-x(2,4)-Q-x-T-x(2)-G 12: 19.3503 6( 4) C-x(1,2)-C-Y-x-L-x(0,2)-T 13: 19.3503 4( 4) S-x(2,4)-A-x(1,2)-C-x(5)-L-T 14: 19.3503 4( 4) S-x(5)-C-x(1,3)-Y-x(2)-T-x(2,3)-G 15: 18.8503 6( 4) C-x(0,2)-C-x(0,2)-Y-x-L-x(2)-T 16: 16.6802 4( 4) R-Y-x-D-x(5)-C 17: 16.6802 4( 4) G-x(2)-T-x-Y-x(2)-C 18: 16.1802 4( 4) G-x(5)-D-x(4)-A-x(1,2)-P 19: 16.1802 5( 4) G-x(4)-G-x(1,2)-S-S 20: 16.1802 4( 4) P-x(0,1)-G-G-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 95.1790 4( 4) C-[CG]-x-C-Y-[AEQ]-L-x(0,2)-T-[GST]-[GQST]-[AGPS]-x(2)-[AGP]-x(4)-[GV]-[QST]-[AGS]-[AGT]-x-[AT]-G-x-[DST]-[ILM]-[GI]-[DSV]-x(3)-[DN]-[IL]-x(2)-[DNP]-[GNV]-[GS]-[GN]-[AGV]-[GQ]-x(3)-[GLV]-[CV] B 2: 91.3563 6( 4) C-x(1,2)-C-Y-[AEQ]-L-x(0,2)-T-[GST]-[GQST]-[AGPS]-x(2)-[AGP]-x(4)-[GV]-[QST]-[AGS]-[AGT]-x-[AT]-G-x-[DST]-[ILM]-[GI]-[DSV]-x(3)-[DN]-[IL]-x(2)-[DNP]-[GNV]-[GS]-[GN]-[AGV]-[GQ]-x(3)-[GLV]-[CV] C 3: 85.5627 4( 4) G-x(0,1)-K-x(2,4)-Q-x-T-[NS]-x-G-x-[AD]-[LPV]-[CGS]-[DGS]-[GNS]-x(2)-[DT]-[GIL]-x(2)-[AP]-G-[GQ]-[GS]-[IV]-[GI]-[AIV]-[FM]-[DNV]-[AGT]-[CN]-x(2)-[EPQ]-x-[GN]-x(3)-[AGQ] D 4: 77.7847 6( 4) C-x(0,2)-C-x(0,2)-Y-[AEQ]-L-[QT]-x-T-[GST]-[GQS]-[APS]-x(2)-[AGS]-x(4)-[GV]-[GQS]-[AS]-[AT]-x-[AQT]-[GS]-x(2)-[LMV]-x-[DSV]-[NQT]-x(2)-[CDN]-[ILP]-x(2)-[DGP]-[GNV]-[AGS]-[GQ] E 5: 77.2834 4( 4) M-x(1,2)-Q-[ANS]-[ET]-x(2)-G-x(0,1)-D-x-[GSV]-[DGSV]-[GNV]-x-F-[DE]-[ILP]-x(2)-[CP]-[GP]-G-[GQ]-[AV]-[AG]-x(3)-[AG]-[CT]-[CST]-x(3)-G-x(3)-[AGT]-[DEGQ] F 6: 68.9376 4( 4) Q-[ANS]-[ET]-x(2)-G-x(0,1)-D-x-[GSV]-[DGSV]-[GNV]-x-F-x(4,5)-P-G-[GQ]-[AG]-[AV]-[GS]-x-[FW]-[DGN]-[AGT]-C-x(4)-[GQ]-x(3)-[ADG] G 7: 62.4344 4( 4) V-x(4,5)-A-x(1,2)-G-x-A-A-[ST]-x(2)-[AGS]-[DGT]-[CGSV]-x(3)-[CGS]-x(3)-[AQT]-x(2)-[AEGT]-x-[STV]-x-[GNT]-[ANST]-[DGP]-[GPT]-[DGV]-x-[GT]-x(4)-[ASV]-x(2)-[AT] H 8: 57.9888 4( 4) T-R-Y-[WY]-D-[CG]-x-[EK]-[GP]-x-C-[GS]-x-[AGS]-x(2)-[ASV]-[AGP]-[ASV]-x(4)-[FL]-[GQST]-x-[CDGN]-x-[AGN] I 9: 53.8188 4( 4) R-Y-[WY]-D-[CG]-x-[EK]-[GP]-x-C-[GS]-x-[AGS]-x(2)-[ASV]-[AGP]-[ASV]-x(4)-[FL]-[GQST]-x-[CDGN]-x-[AGN] J 10: 52.6009 4( 4) P-x(0,1)-G-G-G-x-[GQ]-x-[FL]-x-[AG]-x-[CST]-[AGPS]-[EGQ]-x-G-x(3)-[AGP]-[EGQT]-x(3)-[AGQ]-x(2)-[GST]-x(4)-[CDN]-x(4)-[AEGQ] K 11: 51.9780 4( 4) G-[CDG]-x(4)-D-x(4)-A-x(1,2)-P-[DGST]-x-[AST]-x(4)-[AGQ]-[CT]-x(4)-[GLV]-x(3)-[CGT]-x(3)-[DNPQ]-x(2)-[GS]-[NS]-x(2)-[AGN]-x(2)-[GIP]-[DP] L 12: 51.8548 4( 4) G-x-[AQS]-T-x-Y-x-[DQ]-C-[CG]-x-[AP]-x(2)-[GST]-x-[APS]-x(2)-[ACV]-x-[ASV]-x(2)-[PST]-[ACPV]-x(3)-[CDN]-x(3)-[NQS]-x(3)-[DNPS] M 13: 40.6167 4( 4) G-[DGS]-[GNQ]-x(3)-L-x(3,4)-G-G-x(0,1)-G-x(3)-[AGP]-[CT]-[ST]-x-[EQ]-x-[GP] N 14: 37.1705 4( 4) S-x(2,4)-A-x(1,2)-C-[CGN]-x(3)-[AEQT]-L-T-x(2)-[CGST]-[GNQ]-[ANP]-[PTV]-x-[GNS] O 15: 33.1335 4( 4) Q-[ANS]-[ET]-x(2)-G-x(0,1)-D-x-[GSV]-[DGSV]-[GNV]-x-F-x(4,5)-P P 16: 33.0426 4( 4) S-x(2)-[AGS]-x(2)-C-x(1,3)-Y-x-[LV]-T-x(2,3)-G-[PQS]-[AGV]-x-[CGT] Q 17: 31.4799 4( 4) G-x(2,3)-T-x(3)-[DT]-C-x(2)-P-x(1,2)-C-x(2)-[AQS]-x(4)-[SV]-x(3)-[APV] R 18: 31.4799 4( 4) G-x(1,2)-T-x(3)-[DT]-C-x(2)-P-x(1,2)-C-x(2)-[AQS]-x(4)-[SV]-x(3)-[APV] S 19: 26.9896 4( 4) A-x(1,2)-G-x-A-A-x(3,4)-G-[DGST]-[CNSV]-x-[ACG] T 20: 26.8559 4( 4) P-x(2,3)-G-x-G-x(1,3)-G-[ACV]-x(2)-[AEQS]-x-G-x(3)-[AGL] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 95.1790 4( 4) C-[CG]-x-C-Y-[AEQ]-L-x(0,2)-T-[GST]-[GQST]-[AGPS]-x(2)-[AGP]-x(4)-[GV]-[QST]-[AGS]-[AGT]-x-[AT]-G-x-[DST]-[ILM]-[GI]-[DSV]-x(3)-[DN]-[IL]-x(2)-[DNP]-[GNV]-[GS]-[GN]-[AGV]-[GQ]-x(3)-[GLV]-[CV] Occurences: 4(4) GUN5_HUMIN : 86- 135: neagw CCaCYELtfTSGPvaGkkmvVQSTsTGgDLGSnhfDLniPGGGVGifdGC tpqfg GUN5_TRIRE : 74- 121: wcgag CGkCYQL--TSTGqaPcsscGTGGaAGqSIIVmvtNLcpNNGNAQwcpVV ggtnq GUNB_PSEFL : 347- 396: ssgdv CGrCYQLqfTGSSynApgdpGSAAlAGkTMIVqatNIgyDVSGGQfdiLV pgggv GUNK_FUSOX : 105- 154: seasw CCaCYALtfTTGPvkGkkmiVQSTnTGgDLGDnhfDLmmPGGGVGifdGC tsefg B 2: 91.3563 6( 4) C-x(1,2)-C-Y-[AEQ]-L-x(0,2)-T-[GST]-[GQST]-[AGPS]-x(2)-[AGP]-x(4)-[GV]-[QST]-[AGS]-[AGT]-x-[AT]-G-x-[DST]-[ILM]-[GI]-[DSV]-x(3)-[DN]-[IL]-x(2)-[DNP]-[GNV]-[GS]-[GN]-[AGV]-[GQ]-x(3)-[GLV]-[CV] Occurences: 6(4) GUN5_HUMIN : 86- 135: neagw CcaCYELtfTSGPvaGkkmvVQSTsTGgDLGSnhfDLniPGGGVGifdGC tpqfg GUN5_HUMIN : 87- 135: eagwc Ca-CYELtfTSGPvaGkkmvVQSTsTGgDLGSnhfDLniPGGGVGifdGC tpqfg GUN5_TRIRE : 74- 121: wcgag CgkCYQL--TSTGqaPcsscGTGGaAGqSIIVmvtNLcpNNGNAQwcpVV ggtnq GUNB_PSEFL : 347- 396: ssgdv CgrCYQLqfTGSSynApgdpGSAAlAGkTMIVqatNIgyDVSGGQfdiLV pgggv GUNK_FUSOX : 105- 154: seasw CcaCYALtfTTGPvkGkkmiVQSTnTGgDLGDnhfDLmmPGGGVGifdGC tsefg GUNK_FUSOX : 106- 154: easwc Ca-CYALtfTTGPvkGkkmiVQSTnTGgDLGDnhfDLmmPGGGVGifdGC tsefg C 3: 85.5627 4( 4) G-x(0,1)-K-x(2,4)-Q-x-T-[NS]-x-G-x-[AD]-[LPV]-[CGS]-[DGS]-[GNS]-x(2)-[DT]-[GIL]-x(2)-[AP]-G-[GQ]-[GS]-[IV]-[GI]-[AIV]-[FM]-[DNV]-[AGT]-[CN]-x(2)-[EPQ]-x-[GN]-x(3)-[AGQ] Occurences: 4(4) GUN5_HUMIN : 101- 144: sgpva GkKmvv-QsTStGgDLGSNhfDLniPGGGVGIFDGCtpQfGglpG qrygg GUN5_HUMIN : 101- 144: sgpva G-KkmvvQsTStGgDLGSNhfDLniPGGGVGIFDGCtpQfGglpG qrygg GUN5_TRIRE : 75- 116: cgagc G-Kcy--QlTStGqAPCSScgTGgaAGQSIIVMVTNlcPnNgnaQ wcpvv GUNB_PSEFL : 373- 416: saala G-KtmivQaTNiGyDVSGGqfDIlvPGGGVGAFNACsaQwGvsnA elgaq GUNK_FUSOX : 120- 163: tgpvk GkKmiv-QsTNtGgDLGDNhfDLmmPGGGVGIFDGCtsEfGkalG gaqyg GUNK_FUSOX : 120- 163: tgpvk G-KkmivQsTNtGgDLGDNhfDLmmPGGGVGIFDGCtsEfGkalG gaqyg D 4: 77.7847 6( 4) C-x(0,2)-C-x(0,2)-Y-[AEQ]-L-[QT]-x-T-[GST]-[GQS]-[APS]-x(2)-[AGS]-x(4)-[GV]-[GQS]-[AS]-[AT]-x-[AQT]-[GS]-x(2)-[LMV]-x-[DSV]-[NQT]-x(2)-[CDN]-[ILP]-x(2)-[DGP]-[GNV]-[AGS]-[GQ] Occurences: 6(4) GUN5_HUMIN : 86- 128: neagw CcaC--YELTfTSGPvaGkkmvVQSTsTGgdLgSNhfDLniPGGG vgifd GUN5_HUMIN : 86- 128: neagw C--CacYELTfTSGPvaGkkmvVQSTsTGgdLgSNhfDLniPGGG vgifd GUN5_HUMIN : 87- 128: eagwc Ca-C--YELTfTSGPvaGkkmvVQSTsTGgdLgSNhfDLniPGGG vgifd GUN5_TRIRE : 74- 116: wcgag CgkC--YQLTsTGQApcSscgtGGAAgQSiiVmVTnlCPnnGNAQ wcpvv GUNB_PSEFL : 347- 389: ssgdv CgrC--YQLQfTGSSynApgdpGSAAlAGktMiVQatNIgyDVSG gqfdi GUNK_FUSOX : 105- 147: seasw CcaC--YALTfTTGPvkGkkmiVQSTnTGgdLgDNhfDLmmPGGG vgifd GUNK_FUSOX : 105- 147: seasw C--CacYALTfTTGPvkGkkmiVQSTnTGgdLgDNhfDLmmPGGG vgifd GUNK_FUSOX : 106- 147: easwc Ca-C--YALTfTTGPvkGkkmiVQSTnTGgdLgDNhfDLmmPGGG vgifd E 5: 77.2834 4( 4) M-x(1,2)-Q-[ANS]-[ET]-x(2)-G-x(0,1)-D-x-[GSV]-[DGSV]-[GNV]-x-F-[DE]-[ILP]-x(2)-[CP]-[GP]-G-[GQ]-[AV]-[AG]-x(3)-[AG]-[CT]-[CST]-x(3)-G-x(3)-[AGT]-[DEGQ] Occurences: 4(4) GUN5_HUMIN : 104- 145: vagkk MvvQSTstGgDlGSNhFDLniPGGGVGifdGCTpqfGglpGQ ryggi GUN5_TRIRE : 136- 175: yhfdi Ma-QNEifG-DnVVVdFEPiaCPGQAAsdwGTClcvGqqeTD ptpvl GUNB_PSEFL : 376- 417: lagkt MivQATniGyDvSGGqFDIlvPGGGVGafnACSaqwGvsnAE lgaqy GUNK_FUSOX : 123- 164: vkgkk MivQSTntGgDlGDNhFDLmmPGGGVGifdGCTsefGkalGG aqygg F 6: 68.9376 4( 4) Q-[ANS]-[ET]-x(2)-G-x(0,1)-D-x-[GSV]-[DGSV]-[GNV]-x-F-x(4,5)-P-G-[GQ]-[AG]-[AV]-[GS]-x-[FW]-[DGN]-[AGT]-C-x(4)-[GQ]-x(3)-[ADG] Occurences: 4(4) GUN5_HUMIN : 107- 144: kkmvv QSTstGgDlGSNhFdlni-PGGGVGiFDGCtpqfGglpG qrygg GUN5_TRIRE : 138- 175: fdima QNEifG-DnVVVdFepiacPGQAASdWGTClcvgQqetD ptpvl GUNB_PSEFL : 379- 416: ktmiv QATniGyDvSGGqFdilv-PGGGVGaFNACsaqwGvsnA elgaq GUNK_FUSOX : 126- 163: kkmiv QSTntGgDlGDNhFdlmm-PGGGVGiFDGCtsefGkalG gaqyg G 7: 62.4344 4( 4) V-x(4,5)-A-x(1,2)-G-x-A-A-[ST]-x(2)-[AGS]-[DGT]-[CGSV]-x(3)-[CGS]-x(3)-[AQT]-x(2)-[AEGT]-x-[STV]-x-[GNT]-[ANST]-[DGP]-[GPT]-[DGV]-x-[GT]-x(4)-[ASV]-x(2)-[AT] Occurences: 4(4) GUN5_HUMIN : 64- 109: qtpwa Vnddf-Al-GfAATsiAGSneaGwccAcyElTfTSGPVaGkkmvVqsT stggd GUN5_TRIRE : 148- 195: gdnvv VdfepiAcpGqAASdwGTClcvGqqeTdpTpVlGNDTGsTppgsSppA tsssp GUNB_PSEFL : 330- 375: kipfa Vsptl-Ay-GyAATssGDVcgrCyqlQftGsSyNAPGDpGsaalAgkT mivqa GUNK_FUSOX : 83- 128: yspwa Vndel-Ay-GfAATkiSGGseaSwccAcyAlTfTTGPVkGkkmiVqsT ntggd H 8: 57.9888 4( 4) T-R-Y-[WY]-D-[CG]-x-[EK]-[GP]-x-C-[GS]-x-[AGS]-x(2)-[ASV]-[AGP]-[ASV]-x(4)-[FL]-[GQST]-x-[CDGN]-x-[AGN] Occurences: 4(4) GUN5_HUMIN : 6- 34: adgrs TRYWDCcKPsCGwAkkAPVnqpvFScNaN fqrit GUN5_TRIRE : 23- 51: ykatt TRYYDGqEGaCGcGssSGAfpwqLGiGnG vytaa GUNB_PSEFL : 272- 300: cngya TRYWDCcKPhCGwSanVPSlvspLQsCsA nntrl GUNK_FUSOX : 25- 53: gsghs TRYWDCcKPsCSwSgkAAVnapaLTcDkN dnpis I 9: 53.8188 4( 4) R-Y-[WY]-D-[CG]-x-[EK]-[GP]-x-C-[GS]-x-[AGS]-x(2)-[ASV]-[AGP]-[ASV]-x(4)-[FL]-[GQST]-x-[CDGN]-x-[AGN] Occurences: 4(4) GUN5_HUMIN : 7- 34: dgrst RYWDCcKPsCGwAkkAPVnqpvFScNaN fqrit GUN5_TRIRE : 24- 51: kattt RYYDGqEGaCGcGssSGAfpwqLGiGnG vytaa GUNB_PSEFL : 273- 300: ngyat RYWDCcKPhCGwSanVPSlvspLQsCsA nntrl GUNK_FUSOX : 26- 53: sghst RYWDCcKPsCSwSgkAAVnapaLTcDkN dnpis J 10: 52.6009 4( 4) P-x(0,1)-G-G-G-x-[GQ]-x-[FL]-x-[AG]-x-[CST]-[AGPS]-[EGQ]-x-G-x(3)-[AGP]-[EGQT]-x(3)-[AGQ]-x(2)-[GST]-x(4)-[CDN]-x(4)-[AEGQ] Occurences: 4(4) GUN5_HUMIN : 125- 162: fdlni P-GGGvGiFdGcTPQfGglpGQrygGisSrnecDrfpdA lkpgc GUN5_TRIRE : 201- 239: tsssp PsGGGqQtLyGqCGGaGwtgPTtcqApgTckvqNqwysQ clp GUNB_PSEFL : 397- 434: fdilv P-GGGvGaFnAcSAQwGvsnAElgaQygGflaaCkqqlG ynasl GUNK_FUSOX : 144- 181: fdlmm P-GGGvGiFdGcTSEfGkalGGaqyGgiSsrseCdsypE llkdg K 11: 51.9780 4( 4) G-[CDG]-x(4)-D-x(4)-A-x(1,2)-P-[DGST]-x-[AST]-x(4)-[AGQ]-[CT]-x(4)-[GLV]-x(3)-[CGT]-x(3)-[DNPQ]-x(2)-[GS]-[NS]-x(2)-[AGN]-x(2)-[GIP]-[DP] Occurences: 4(4) GUN5_HUMIN : 166- 213: dalkp GCywrfDwfknAdnPSfSfrqvQCpaelVartGcrrNddGNfpAvqIP GUN5_TRIRE : 143- 189: qneif GDnvvvDfepiAc-PGqAasdwGTclcvGqqeTdptPvlGNdtGstPP gsspp GUNB_PSEFL : 318- 365: scdgg GGymcwDkipfAvsPTlAygyaATssgdVcgrCyqlQftGSsyNapGD pgsaa GUNK_FUSOX : 186- 233: ellkd GChwrfDwfenAdnPDfTfeqvQCpkalLdisGckrDddSSfpAfkGD tsask L 12: 51.8548 4( 4) G-x-[AQS]-T-x-Y-x-[DQ]-C-[CG]-x-[AP]-x(2)-[GST]-x-[APS]-x(2)-[ACV]-x-[ASV]-x(2)-[PST]-[ACPV]-x(3)-[CDN]-x(3)-[NQS]-x(3)-[DNPS] Occurences: 4(4) GUN5_HUMIN : 3- 40: ad GrSTrYwDCCkPscGwAkkApVnqPVfscNanfQritD fdaks GUN5_TRIRE : 205- 242: ppsgg GqQTlYgQCGgAgwTgPttCqApgTCkvqNqwySqclP GUNB_PSEFL : 269- 306: dggcn GyATrYwDCCkPhcGwSanVpSlvSPlqsCsanNtrlS dvsvg GUNK_FUSOX : 22- 59: aasgs GhSTrYwDCCkPscSwSgkAaVnaPAltcDkndNpisN tnavn M 13: 40.6167 4( 4) G-[DGS]-[GNQ]-x(3)-L-x(3,4)-G-G-x(0,1)-G-x(3)-[AGP]-[CT]-[ST]-x-[EQ]-x-[GP] Occurences: 4(4) GUN5_HUMIN : 116- 140: tggdl GSNhfdLnipgGGvGifdGCTpQfG glpgq GUN5_TRIRE : 203- 227: sspps GGGqqtLygqcGGaGwtgPTTcQaP gtckv GUNB_PSEFL : 389- 412: gydvs GGQfdiLvpg-GGvGafnACSaQwG vsnae GUNK_FUSOX : 135- 159: tggdl GDNhfdLmmpgGGvGifdGCTsEfG kalgg N 14: 37.1705 4( 4) S-x(2,4)-A-x(1,2)-C-[CGN]-x(3)-[AEQT]-L-T-x(2)-[CGST]-[GNQ]-[ANP]-[PTV]-x-[GNS] Occurences: 4(4) GUN5_HUMIN : 80- 101: tsiag Sne--AgwCCacyELTftSGPVaG kkmvv GUN5_TRIRE : 68- 89: dtaga Swcg-Ag-CGkcyQLTstGQAPcS scgtg GUNB_PSEFL : 173- 196: sssss SvltgAqaCNwygTLTplCNNTsN gwgye GUNK_FUSOX : 97- 120: aatki SggseAswCCacyALTftTGPVkG kkmiv O 15: 33.1335 4( 4) Q-[ANS]-[ET]-x(2)-G-x(0,1)-D-x-[GSV]-[DGSV]-[GNV]-x-F-x(4,5)-P Occurences: 4(4) GUN5_HUMIN : 107- 125: kkmvv QSTstGgDlGSNhFdlni-P gggvg GUN5_TRIRE : 138- 156: fdima QNEifG-DnVVVdFepiacP gqaas GUNB_PSEFL : 379- 397: ktmiv QATniGyDvSGGqFdilv-P gggvg GUNK_FUSOX : 126- 144: kkmiv QSTntGgDlGDNhFdlmm-P gggvg P 16: 33.0426 4( 4) S-x(2)-[AGS]-x(2)-C-x(1,3)-Y-x-[LV]-T-x(2,3)-G-[PQS]-[AGV]-x-[CGT] Occurences: 4(4) GUN5_HUMIN : 80- 101: tsiag SneAgwCcacYeLTftsGPVaG kkmvv GUN5_TRIRE : 68- 88: dtaga SwcGagCgkcYqLTst-GQApC sscgt GUNB_PSEFL : 26- 45: alsag SiqAavCe--YrVTnewGSGfT asiri GUNK_FUSOX : 100- 120: kisgg SeaSwcCac-YaLTfttGPVkG kkmiv Q 17: 31.4799 4( 4) G-x(2,3)-T-x(3)-[DT]-C-x(2)-P-x(1,2)-C-x(2)-[AQS]-x(4)-[SV]-x(3)-[APV] Occurences: 4(4) GUN5_HUMIN : 3- 28: ad Grs-TrywDCckPs-CgwAkkapVnqpV fscna GUN5_TRIRE : 215- 242: ygqcg GagwTgptTCqaPgtCkvQnqwySqclP GUNB_PSEFL : 269- 294: dggcn Gya-TrywDCckPh-CgwSanvpSlvsP lqscs GUNK_FUSOX : 22- 47: aasgs Ghs-TrywDCckPs-CswSgkaaVnapA ltcdk R 18: 31.4799 4( 4) G-x(1,2)-T-x(3)-[DT]-C-x(2)-P-x(1,2)-C-x(2)-[AQS]-x(4)-[SV]-x(3)-[APV] Occurences: 4(4) GUN5_HUMIN : 3- 28: ad GrsTrywDCckPs-CgwAkkapVnqpV fscna GUN5_TRIRE : 217- 242: qcgga Gw-TgptTCqaPgtCkvQnqwySqclP GUNB_PSEFL : 269- 294: dggcn GyaTrywDCckPh-CgwSanvpSlvsP lqscs GUNK_FUSOX : 22- 47: aasgs GhsTrywDCckPs-CswSgkaaVnapA ltcdk S 19: 26.9896 4( 4) A-x(1,2)-G-x-A-A-x(3,4)-G-[DGST]-[CNSV]-x-[ACG] Occurences: 4(4) GUN5_HUMIN : 69- 83: vnddf Al-GfAAtsiaGSNeA gwcca GUN5_TRIRE : 154- 168: dfepi AcpGqAAsdw-GTClC vgqqe GUNB_PSEFL : 335- 348: vsptl Ay-GyAAtss-GDVcG rcyql GUNK_FUSOX : 88- 102: vndel Ay-GfAAtkisGGSeA swcca T 20: 26.8559 4( 4) P-x(2,3)-G-x-G-x(1,3)-G-[ACV]-x(2)-[AEQS]-x-G-x(3)-[AGL] Occurences: 4(4) GUN5_HUMIN : 125- 144: fdlni Pgg-GvGifdGCtpQfGglpG qrygg GUN5_TRIRE : 43- 61: ssgaf PwqlGiGn--GVytAaGsqaL fdtag GUNB_PSEFL : 10- 29: sgwvr PlmlGcGll-GAalSaGsiqA avcey GUNK_FUSOX : 144- 163: fdlmm Pgg-GvGifdGCtsEfGkalG gaqyg Number of patterns evaluated by Pratt:6195 Total running time: 2 seconds