------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 4 sequences from file GLYCOSYL_HYDROL_F39 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 4 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GLYCOSYL_HYDROL_F39.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: IDUA_CANFA 655 IDUA_HUMAN 653 XYNB_CALSA 488 XYNB_THESA 500 Pratt run started at Thu Feb 6 19:41:15 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 65.7208 4( 4) W-x(2)-L-x(3,4)-L-x(3,4)-I-x-R-Y-G-x(3)-V-x(2)-W-x-F-E-x-W-N-E-P-x(4)-F 2: 61.5508 4( 4) L-x(3,4)-L-x(3,4)-I-x-R-Y-G-x(3)-V-x(2)-W-x-F-E-x-W-N-E-P-x(4)-F 3: 57.3807 4( 4) A-x(3,5)-I-x-R-Y-G-x(3)-V-x(2)-W-x-F-E-x-W-N-E-P-x(4)-F 4: 56.8807 4( 4) A-x(3,5)-I-x(0,1)-R-Y-G-x(3)-V-x(2)-W-x-F-E-x-W-N-E-P-x(4)-F 5: 53.2107 4( 4) I-x-R-Y-G-x(3)-V-x(2)-W-x(0,1)-F-x(0,1)-E-x-W-N-E-P-x(4)-F 6: 49.0406 4( 4) R-Y-G-x(3)-V-x(2)-W-x(0,1)-F-x(0,1)-E-x-W-N-E-P-x(4)-F 7: 44.8706 4( 4) Y-G-x(3)-V-x(2)-W-x(0,1)-F-x(0,1)-E-x-W-N-E-P-x(4)-F 8: 41.7005 4( 4) G-x(3)-V-x(2)-W-x-F-E-x-W-N-E-P-x(4)-F 9: 41.2005 4( 4) G-x(2,3)-V-x(2)-W-x-F-E-x-W-N-E-P-x(4)-F 10: 40.7005 4( 4) G-x(3)-V-x(2)-W-x(0,1)-F-x(0,1)-E-x-W-N-E-P-x(4)-F 11: 37.5305 4( 4) V-x(2)-W-x-F-E-x-W-N-E-P-x(4)-F 12: 37.0305 4( 4) V-x(1,2)-W-x-F-E-x-W-N-E-P-x(4)-F 13: 36.5305 4( 4) V-x(2)-W-x(0,1)-F-x(0,1)-E-x-W-N-E-P-x(4)-F 14: 36.5305 4( 4) V-x(0,2)-W-x-F-E-x-W-N-E-P-x(4)-F 15: 33.3604 4( 4) W-x-F-E-x-W-N-E-P-x(4)-F 16: 32.3604 4( 4) W-x(0,1)-F-x(0,1)-E-x-W-N-E-P-x(4)-F 17: 31.8604 4( 4) A-x(3,5)-I-x-R-Y-G-x(3)-V-x(2)-W-x(0,1)-F 18: 29.1904 4( 4) F-E-x-W-N-E-P-x(4)-F 19: 28.6904 5( 4) F-x(0,1)-E-x-W-N-E-P-x(4)-F 20: 28.1904 4( 4) F-x(3)-D-x(3)-D-x(1,2)-L-x(0,1)-E-x(4)-P-x(2)-E Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 109.3584 4( 4) I-[GS]-R-Y-G-x-[AENS]-x-V-x-[EK]-W-x(0,1)-F-x(0,1)-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN] B 2: 107.7906 4( 4) R-Y-G-x-[AENS]-x-V-x-[EK]-W-x(0,1)-F-x(0,1)-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP] C 3: 106.7907 4( 4) Y-G-x-[AENS]-x-V-x-[EK]-W-x(0,1)-F-x(0,1)-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP]-[AL] D 4: 103.6227 4( 4) V-x(0,2)-W-x-F-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP]-[AL]-x(3)-G-[GP]-[AP] E 5: 103.6129 4( 4) V-x-[EK]-W-x(0,1)-F-x(0,1)-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP]-[AL]-x(3)-G-[GP] F 6: 103.1538 4( 4) W-x-F-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP]-[AL]-x(3)-G-[GP]-[AP]-x-[ACD] G 7: 102.6206 4( 4) G-x-[AENS]-x-V-x-[EK]-W-x(0,1)-F-x(0,1)-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP]-[AL] H 8: 102.1538 4( 4) W-x(0,1)-F-x(0,1)-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP]-[AL]-x(3)-G-[GP]-[AP]-x-[ACD] I 9: 101.2280 4( 4) A-x(3,5)-I-[GS]-R-Y-G-x-[AENS]-x-V-x-[EK]-W-x(0,1)-F-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE] J 10: 100.9015 4( 4) V-x(1,2)-W-x-F-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP]-[AL]-x(3)-G-[GP] K 11: 98.9837 4( 4) F-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP]-[AL]-x(3)-G-[GP]-[AP]-x-[ACD] L 12: 98.7502 4( 4) W-x-[DEQ]-L-x(3,4)-L-x(3,4)-I-[GS]-R-Y-G-x-[AENS]-x-V-x-[EK]-W-x-F-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F M 13: 98.4837 5( 4) F-x(0,1)-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP]-[AL]-x(3)-G-[GP]-[AP]-x-[ACD] N 14: 98.1773 4( 4) G-x(3)-V-x(2)-W-x-F-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP]-[AL] O 15: 98.1773 4( 4) V-x(2)-W-x-F-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP]-[AL]-x(3)-G P 16: 98.0475 4( 4) A-x(3,5)-I-x(0,1)-R-Y-G-x-[AENS]-x-V-x-[EK]-W-x-F-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE] Q 17: 97.6773 4( 4) G-x(2,3)-V-x(2)-W-x-F-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP]-[AL] R 18: 96.1567 4( 4) L-x(3,4)-L-x(3,4)-I-[GS]-R-Y-G-x-[AENS]-x-V-x-[EK]-W-x-F-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y S 19: 95.3221 4( 4) A-x(3,5)-I-x-R-Y-G-x-[AENS]-x-V-x-[EK]-W-x-F-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC] T 20: 59.0874 4( 4) F-x(2)-[IL]-D-x(2)-[FIL]-D-x(1,2)-L-x(0,1)-E-x-[GQ]-[ILM]-x-P-x-[FIV]-E-[IL]-x(3)-[AP]-x(4)-[ST]-[DG]-x(2)-[DT] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 109.3584 4( 4) I-[GS]-R-Y-G-x-[AENS]-x-V-x-[EK]-W-x(0,1)-F-x(0,1)-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN] Occurences: 4(4) IDUA_CANFA : 163- 211: larry IGRYGlSyVsKWnF-EtWNEPDhHDFdnVTmtlQgFlnYydACsEGlRAA spalr IDUA_HUMAN : 164- 212: larry IGRYGlAhVsKWnF-EtWNEPDhHDFdnVSmtmQgFlnYydACsEGlRAA spalr XYNB_CALSA : 145- 193: larhl ISRYGkNeVrEWfF-EvWNEPNlKDFfwAGtmeEyFklYkyAAfAIkKVD selrv XYNB_CALSA : 145- 193: larhl ISRYGkNeVrEW-FfEvWNEPNlKDFfwAGtmeEyFklYkyAAfAIkKVD selrv XYNB_THESA : 142- 190: vlhhf ISRYGiEeVlKWpF-EiWNEPNlKEFwkDAdekEyFklYkvTAkAIkEVN enlkv B 2: 107.7906 4( 4) R-Y-G-x-[AENS]-x-V-x-[EK]-W-x(0,1)-F-x(0,1)-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP] Occurences: 4(4) IDUA_CANFA : 165- 213: rryig RYGlSyVsKWnF-EtWNEPDhHDFdnVTmtlQgFlnYydACsEGlRAASP alrfg IDUA_HUMAN : 166- 214: rryig RYGlAhVsKWnF-EtWNEPDhHDFdnVSmtmQgFlnYydACsEGlRAASP alrlg XYNB_CALSA : 147- 195: rhlis RYGkNeVrEWfF-EvWNEPNlKDFfwAGtmeEyFklYkyAAfAIkKVDSE lrvgg XYNB_CALSA : 147- 195: rhlis RYGkNeVrEW-FfEvWNEPNlKDFfwAGtmeEyFklYkyAAfAIkKVDSE lrvgg XYNB_THESA : 144- 192: hhfis RYGiEeVlKWpF-EiWNEPNlKEFwkDAdekEyFklYkvTAkAIkEVNEN lkvgg C 3: 106.7907 4( 4) Y-G-x-[AENS]-x-V-x-[EK]-W-x(0,1)-F-x(0,1)-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP]-[AL] Occurences: 4(4) IDUA_CANFA : 166- 214: ryigr YGlSyVsKWnF-EtWNEPDhHDFdnVTmtlQgFlnYydACsEGlRAASPA lrfgg IDUA_HUMAN : 167- 215: ryigr YGlAhVsKWnF-EtWNEPDhHDFdnVSmtmQgFlnYydACsEGlRAASPA lrlgg XYNB_CALSA : 148- 196: hlisr YGkNeVrEWfF-EvWNEPNlKDFfwAGtmeEyFklYkyAAfAIkKVDSEL rvggp XYNB_CALSA : 148- 196: hlisr YGkNeVrEW-FfEvWNEPNlKDFfwAGtmeEyFklYkyAAfAIkKVDSEL rvggp XYNB_THESA : 145- 193: hfisr YGiEeVlKWpF-EiWNEPNlKEFwkDAdekEyFklYkvTAkAIkEVNENL kvggp D 4: 103.6227 4( 4) V-x(0,2)-W-x-F-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP]-[AL]-x(3)-G-[GP]-[AP] Occurences: 4(4) IDUA_CANFA : 171- 220: yglsy VskWnFEtWNEPDhHDFdnVTmtlQgFlnYydACsEGlRAASPAlrfGGP gdsfh IDUA_HUMAN : 172- 221: yglah VskWnFEtWNEPDhHDFdnVSmtmQgFlnYydACsEGlRAASPAlrlGGP gdsfh XYNB_CALSA : 153- 202: ygkne VreWfFEvWNEPNlKDFfwAGtmeEyFklYkyAAfAIkKVDSELrvgGPA taida XYNB_THESA : 150- 199: ygiee VlkWpFEiWNEPNlKEFwkDAdekEyFklYkvTAkAIkEVNENLkvgGPA icgga E 5: 103.6129 4( 4) V-x-[EK]-W-x(0,1)-F-x(0,1)-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP]-[AL]-x(3)-G-[GP] Occurences: 4(4) IDUA_CANFA : 171- 219: yglsy VsKWnF-EtWNEPDhHDFdnVTmtlQgFlnYydACsEGlRAASPAlrfGG pgdsf IDUA_HUMAN : 172- 220: yglah VsKWnF-EtWNEPDhHDFdnVSmtmQgFlnYydACsEGlRAASPAlrlGG pgdsf XYNB_CALSA : 153- 201: ygkne VrEWfF-EvWNEPNlKDFfwAGtmeEyFklYkyAAfAIkKVDSELrvgGP ataid XYNB_CALSA : 153- 201: ygkne VrEW-FfEvWNEPNlKDFfwAGtmeEyFklYkyAAfAIkKVDSELrvgGP ataid XYNB_THESA : 150- 198: ygiee VlKWpF-EiWNEPNlKEFwkDAdekEyFklYkvTAkAIkEVNENLkvgGP aicgg F 6: 103.1538 4( 4) W-x-F-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP]-[AL]-x(3)-G-[GP]-[AP]-x-[ACD] Occurences: 4(4) IDUA_CANFA : 174- 222: syvsk WnFEtWNEPDhHDFdnVTmtlQgFlnYydACsEGlRAASPAlrfGGPgD sfhpw IDUA_HUMAN : 175- 223: ahvsk WnFEtWNEPDhHDFdnVSmtmQgFlnYydACsEGlRAASPAlrlGGPgD sfhtp XYNB_CALSA : 156- 204: nevre WfFEvWNEPNlKDFfwAGtmeEyFklYkyAAfAIkKVDSELrvgGPAtA idawi XYNB_THESA : 153- 201: eevlk WpFEiWNEPNlKEFwkDAdekEyFklYkvTAkAIkEVNENLkvgGPAiC ggady G 7: 102.6206 4( 4) G-x-[AENS]-x-V-x-[EK]-W-x(0,1)-F-x(0,1)-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP]-[AL] Occurences: 4(4) IDUA_CANFA : 167- 214: yigry GlSyVsKWnF-EtWNEPDhHDFdnVTmtlQgFlnYydACsEGlRAASPA lrfgg IDUA_HUMAN : 168- 215: yigry GlAhVsKWnF-EtWNEPDhHDFdnVSmtmQgFlnYydACsEGlRAASPA lrlgg XYNB_CALSA : 149- 196: lisry GkNeVrEWfF-EvWNEPNlKDFfwAGtmeEyFklYkyAAfAIkKVDSEL rvggp XYNB_CALSA : 149- 196: lisry GkNeVrEW-FfEvWNEPNlKDFfwAGtmeEyFklYkyAAfAIkKVDSEL rvggp XYNB_THESA : 146- 193: fisry GiEeVlKWpF-EiWNEPNlKEFwkDAdekEyFklYkvTAkAIkEVNENL kvggp H 8: 102.1538 4( 4) W-x(0,1)-F-x(0,1)-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP]-[AL]-x(3)-G-[GP]-[AP]-x-[ACD] Occurences: 4(4) IDUA_CANFA : 174- 222: syvsk WnF-EtWNEPDhHDFdnVTmtlQgFlnYydACsEGlRAASPAlrfGGPgD sfhpw IDUA_HUMAN : 175- 223: ahvsk WnF-EtWNEPDhHDFdnVSmtmQgFlnYydACsEGlRAASPAlrlGGPgD sfhtp XYNB_CALSA : 156- 204: nevre WfF-EvWNEPNlKDFfwAGtmeEyFklYkyAAfAIkKVDSELrvgGPAtA idawi XYNB_CALSA : 156- 204: nevre W-FfEvWNEPNlKDFfwAGtmeEyFklYkyAAfAIkKVDSELrvgGPAtA idawi XYNB_THESA : 153- 201: eevlk WpF-EiWNEPNlKEFwkDAdekEyFklYkvTAkAIkEVNENLkvgGPAiC ggady I 9: 101.2280 4( 4) A-x(3,5)-I-[GS]-R-Y-G-x-[AENS]-x-V-x-[EK]-W-x(0,1)-F-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE] Occurences: 4(4) IDUA_CANFA : 159- 206: lvsll Arry--IGRYGlSyVsKWnFEtWNEPDhHDFdnVTmtlQgFlnYydACsE glraa IDUA_HUMAN : 160- 207: lvssl Arry--IGRYGlAhVsKWnFEtWNEPDhHDFdnVSmtmQgFlnYydACsE glraa XYNB_CALSA : 141- 188: lieel Arhl--ISRYGkNeVrEWfFEvWNEPNlKDFfwAGtmeEyFklYkyAAfA ikkvd XYNB_THESA : 136- 185: sdlvk AvlhhfISRYGiEeVlKWpFEiWNEPNlKEFwkDAdekEyFklYkvTAkA ikevn J 10: 100.9015 4( 4) V-x(1,2)-W-x-F-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP]-[AL]-x(3)-G-[GP] Occurences: 4(4) IDUA_CANFA : 171- 219: yglsy VskWnFEtWNEPDhHDFdnVTmtlQgFlnYydACsEGlRAASPAlrfGG pgdsf IDUA_HUMAN : 172- 220: yglah VskWnFEtWNEPDhHDFdnVSmtmQgFlnYydACsEGlRAASPAlrlGG pgdsf XYNB_CALSA : 153- 201: ygkne VreWfFEvWNEPNlKDFfwAGtmeEyFklYkyAAfAIkKVDSELrvgGP ataid XYNB_THESA : 150- 198: ygiee VlkWpFEiWNEPNlKEFwkDAdekEyFklYkvTAkAIkEVNENLkvgGP aicgg K 11: 98.9837 4( 4) F-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP]-[AL]-x(3)-G-[GP]-[AP]-x-[ACD] Occurences: 4(4) IDUA_CANFA : 176- 222: vskwn FEtWNEPDhHDFdnVTmtlQgFlnYydACsEGlRAASPAlrfGGPgD sfhpw IDUA_HUMAN : 177- 223: vskwn FEtWNEPDhHDFdnVSmtmQgFlnYydACsEGlRAASPAlrlGGPgD sfhtp XYNB_CALSA : 158- 204: vrewf FEvWNEPNlKDFfwAGtmeEyFklYkyAAfAIkKVDSELrvgGPAtA idawi XYNB_THESA : 155- 201: vlkwp FEiWNEPNlKEFwkDAdekEyFklYkvTAkAIkEVNENLkvgGPAiC ggady L 12: 98.7502 4( 4) W-x-[DEQ]-L-x(3,4)-L-x(3,4)-I-[GS]-R-Y-G-x-[AENS]-x-V-x-[EK]-W-x-F-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F Occurences: 4(4) IDUA_CANFA : 151- 197: rqvla WkELvsl-LarryIGRYGlSyVsKWnFEtWNEPDhHDFdnVTmtlQgF lnyyd IDUA_HUMAN : 152- 198: qqvfe WkDLvss-LarryIGRYGlAhVsKWnFEtWNEPDhHDFdnVSmtmQgF lnyyd XYNB_CALSA : 133- 179: ksyee WgQLiee-LarhlISRYGkNeVrEWfFEvWNEPNlKDFfwAGtmeEyF klyky XYNB_THESA : 130- 176: kdyek WsDLvkavLhhf-ISRYGiEeVlKWpFEiWNEPNlKEFwkDAdekEyF klykv M 13: 98.4837 5( 4) F-x(0,1)-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP]-[AL]-x(3)-G-[GP]-[AP]-x-[ACD] Occurences: 5(4) IDUA_CANFA : 176- 222: vskwn F-EtWNEPDhHDFdnVTmtlQgFlnYydACsEGlRAASPAlrfGGPgD sfhpw IDUA_HUMAN : 177- 223: vskwn F-EtWNEPDhHDFdnVSmtmQgFlnYydACsEGlRAASPAlrlGGPgD sfhtp XYNB_CALSA : 157- 204: evrew FfEvWNEPNlKDFfwAGtmeEyFklYkyAAfAIkKVDSELrvgGPAtA idawi XYNB_CALSA : 158- 204: vrewf F-EvWNEPNlKDFfwAGtmeEyFklYkyAAfAIkKVDSELrvgGPAtA idawi XYNB_THESA : 155- 201: vlkwp F-EiWNEPNlKEFwkDAdekEyFklYkvTAkAIkEVNENLkvgGPAiC ggady N 14: 98.1773 4( 4) G-x(3)-V-x(2)-W-x-F-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP]-[AL] Occurences: 4(4) IDUA_CANFA : 167- 214: yigry GlsyVskWnFEtWNEPDhHDFdnVTmtlQgFlnYydACsEGlRAASPA lrfgg IDUA_HUMAN : 168- 215: yigry GlahVskWnFEtWNEPDhHDFdnVSmtmQgFlnYydACsEGlRAASPA lrlgg XYNB_CALSA : 149- 196: lisry GkneVreWfFEvWNEPNlKDFfwAGtmeEyFklYkyAAfAIkKVDSEL rvggp XYNB_THESA : 146- 193: fisry GieeVlkWpFEiWNEPNlKEFwkDAdekEyFklYkvTAkAIkEVNENL kvggp O 15: 98.1773 4( 4) V-x(2)-W-x-F-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP]-[AL]-x(3)-G Occurences: 4(4) IDUA_CANFA : 171- 218: yglsy VskWnFEtWNEPDhHDFdnVTmtlQgFlnYydACsEGlRAASPAlrfG gpgds IDUA_HUMAN : 172- 219: yglah VskWnFEtWNEPDhHDFdnVSmtmQgFlnYydACsEGlRAASPAlrlG gpgds XYNB_CALSA : 153- 200: ygkne VreWfFEvWNEPNlKDFfwAGtmeEyFklYkyAAfAIkKVDSELrvgG patai XYNB_THESA : 150- 197: ygiee VlkWpFEiWNEPNlKEFwkDAdekEyFklYkvTAkAIkEVNENLkvgG paicg P 16: 98.0475 4( 4) A-x(3,5)-I-x(0,1)-R-Y-G-x-[AENS]-x-V-x-[EK]-W-x-F-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE] Occurences: 4(4) IDUA_CANFA : 159- 206: lvsll Arry--IgRYGlSyVsKWnFEtWNEPDhHDFdnVTmtlQgFlnYydACsE glraa IDUA_HUMAN : 160- 207: lvssl Arry--IgRYGlAhVsKWnFEtWNEPDhHDFdnVSmtmQgFlnYydACsE glraa XYNB_CALSA : 141- 188: lieel Arhl--IsRYGkNeVrEWfFEvWNEPNlKDFfwAGtmeEyFklYkyAAfA ikkvd XYNB_THESA : 136- 185: sdlvk AvlhhfIsRYGiEeVlKWpFEiWNEPNlKEFwkDAdekEyFklYkvTAkA ikevn Q 17: 97.6773 4( 4) G-x(2,3)-V-x(2)-W-x-F-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC]-x-[AE]-[GI]-x-[EKR]-[AV]-[ADN]-[ES]-[ENP]-[AL] Occurences: 4(4) IDUA_CANFA : 167- 214: yigry GlsyVskWnFEtWNEPDhHDFdnVTmtlQgFlnYydACsEGlRAASPA lrfgg IDUA_HUMAN : 168- 215: yigry GlahVskWnFEtWNEPDhHDFdnVSmtmQgFlnYydACsEGlRAASPA lrlgg XYNB_CALSA : 149- 196: lisry GkneVreWfFEvWNEPNlKDFfwAGtmeEyFklYkyAAfAIkKVDSEL rvggp XYNB_THESA : 146- 193: fisry GieeVlkWpFEiWNEPNlKEFwkDAdekEyFklYkvTAkAIkEVNENL kvggp R 18: 96.1567 4( 4) L-x(3,4)-L-x(3,4)-I-[GS]-R-Y-G-x-[AENS]-x-V-x-[EK]-W-x-F-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y Occurences: 4(4) IDUA_CANFA : 154- 200: lawke Lvsl-LarryIGRYGlSyVsKWnFEtWNEPDhHDFdnVTmtlQgFlnY ydacs IDUA_HUMAN : 155- 201: fewkd Lvss-LarryIGRYGlAhVsKWnFEtWNEPDhHDFdnVSmtmQgFlnY ydacs XYNB_CALSA : 136- 182: eewgq Liee-LarhlISRYGkNeVrEWfFEvWNEPNlKDFfwAGtmeEyFklY kyaaf XYNB_THESA : 133- 179: ekwsd LvkavLhhf-ISRYGiEeVlKWpFEiWNEPNlKEFwkDAdekEyFklY kvtak S 19: 95.3221 4( 4) A-x(3,5)-I-x-R-Y-G-x-[AENS]-x-V-x-[EK]-W-x-F-E-x-W-N-E-P-[DN]-x-[HK]-[DE]-F-x(2)-[ADV]-[AGST]-x(3)-[EQ]-x-F-x(2)-Y-x(2)-[AT]-[AC] Occurences: 4(4) IDUA_CANFA : 159- 204: lvsll Arry--IgRYGlSyVsKWnFEtWNEPDhHDFdnVTmtlQgFlnYydAC seglr IDUA_HUMAN : 160- 205: lvssl Arry--IgRYGlAhVsKWnFEtWNEPDhHDFdnVSmtmQgFlnYydAC seglr XYNB_CALSA : 141- 186: lieel Arhl--IsRYGkNeVrEWfFEvWNEPNlKDFfwAGtmeEyFklYkyAA faikk XYNB_THESA : 136- 183: sdlvk AvlhhfIsRYGiEeVlKWpFEiWNEPNlKEFwkDAdekEyFklYkvTA kaike T 20: 59.0874 4( 4) F-x(2)-[IL]-D-x(2)-[FIL]-D-x(1,2)-L-x(0,1)-E-x-[GQ]-[ILM]-x-P-x-[FIV]-E-[IL]-x(3)-[AP]-x(4)-[ST]-[DG]-x(2)-[DT] Occurences: 4(4) IDUA_CANFA : 110- 144: glsyn FthLDgyLDl-LrEnQLlPgFELmgsPsqrfTDfeD krqvl IDUA_HUMAN : 111- 145: glsyn FthLDgyLDl-LrEnQLlPgFELmgsAsghfTDfeD kqqvf XYNB_CALSA : 82- 116: llsfs FfnIDsiIDflL-EiGMkPfIELsfmPealaSGtkT vfhyk XYNB_CALSA : 82- 116: llsfs FfnIDsiIDf-LlEiGMkPfIELsfmPealaSGtkT vfhyk XYNB_THESA : 79- 113: kpfyn FtyIDriFDsfL-EiGIrPfVEIgfmPkklaSGtqT vfywe Number of patterns evaluated by Pratt:22222 Total running time: 9 seconds