------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file GLYCOSYL_HYDROL_F31_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GLYCOSYL_HYDROL_F31_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: AGLU_CANTS 1070 AMYG_SCHOC 958 LYAG_HUMAN 952 SUIS_HUMAN 1827 SUIS_RABIT 1827 SUIS_RAT 917 YB79_YEAST 954 Pratt run started at Thu Feb 6 19:39:24 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 24.0203 7( 7) P-x(2,3)-P-x(4,5)-G-x(3)-C-R-x(2)-Y 2: 20.3503 11( 7) P-x(4,5)-G-x(3)-C-R-x(2)-Y 3: 19.8503 11( 7) P-x(4,5)-G-x(2,3)-C-R-x(2)-Y 4: 19.8503 9( 7) P-x(4,5)-G-x-H-x(1,2)-R-x(2)-Y 5: 19.8503 7( 7) P-x(3,4)-G-x-H-x(1,2)-R-x(2)-Y 6: 19.3503 11( 7) P-x(4,5)-G-x(3)-C-R-x(0,2)-Y 7: 18.8503 7( 7) N-x-Y-G-x(1,3)-H-x(1,3)-Y 8: 18.8503 8( 7) A-x(3,5)-L-x(0,2)-D-D-G 9: 16.6802 7( 7) A-x(3)-L-x(2)-D-D 10: 16.1802 9( 7) Y-x(1,2)-I-x-D-x(2)-I 11: 16.1802 8( 7) A-x(3,4)-L-x(2)-D-D 12: 16.1802 7( 7) G-x-H-x(1,2)-R-x(2)-Y 13: 16.1802 11( 7) R-x(5)-R-x(3,4)-L-P 14: 16.1802 9( 7) G-x(5)-T-P-x(0,1)-L 15: 16.1802 9( 7) Q-x-Y-x(4)-G-x(4,5)-P 16: 16.1802 10( 7) G-x(2)-D-x(5)-G-x(2,3)-P 17: 15.6802 8( 7) P-x(3,4)-G-x(4)-V-x(0,1)-F 18: 15.6802 7( 7) G-x(4)-V-x(1,3)-L-x-P 19: 15.6802 7( 7) G-x(3)-C-R-x(0,2)-Y 20: 15.6802 12( 7) P-x(2,4)-L-x(3)-L-x(3)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 36.0227 7( 7) P-x(2,3)-P-x(4,5)-G-[FY]-x(2)-C-R-[WY]-[GN]-Y-x-[DNST] B 2: 31.5314 7( 7) A-x-[GQ]-x-L-[FY]-x-D-D-[GL]-x-[STV]-x(4)-[ERS] C 3: 29.1682 11( 7) P-x(4,5)-G-x(3)-C-R-[WY]-[GN]-Y-x-[DNST] D 4: 28.6682 11( 7) P-x(4,5)-G-x(2,3)-C-R-[WY]-[GN]-Y-x-[DNST] E 5: 28.5560 7( 7) N-x-Y-G-x(1,3)-H-x(1,3)-Y-x-[ADE]-x-[EKR]-x(3)-[DENS]-[AGPT] F 6: 27.7446 8( 7) A-x(3,4)-L-[FY]-x-D-D-[GL]-x-[STV]-x(4)-[ERS] G 7: 24.8114 10( 7) G-x-[IL]-D-[FLV]-x-[FIM]-x(2)-G-x(2,3)-P H 8: 24.7740 11( 7) P-x(4,5)-G-[FY]-x(2)-C-R-x(0,2)-Y-[DGNS] I 9: 23.9004 7( 7) Y-x(1,2)-I-x-D-x-[AV]-I-x(2)-[AGNPS]-x-[APT] J 10: 23.1233 9( 7) P-x(4,5)-G-x-H-x(1,2)-R-x-[GN]-Y K 11: 23.1233 7( 7) P-x(3,4)-G-x-H-x(1,2)-R-x-[GN]-Y L 12: 22.7550 7( 7) P-x(3,4)-G-x(3)-[ADG]-V-x(0,1)-F-[ILPV]-x(3)-[DNST] M 13: 22.7210 11( 7) P-x(2,4)-L-[GIL]-x(2)-L-x(3)-G-x(4)-[ASTV]-x(3)-[DEPQ] N 14: 22.0257 8( 7) A-x(3,5)-L-x(0,2)-D-D-G-x-[ST] O 15: 21.1039 7( 7) G-[FY]-x(2)-C-R-x(0,2)-Y-[DGNS] P 16: 19.4533 7( 7) G-x-H-x(1,2)-R-x-[GN]-Y Q 17: 18.8007 7( 7) G-x(5)-T-P-x(0,1)-L-x-[APV] R 18: 18.7655 9( 7) Q-x-Y-x(4)-G-x(4,5)-P-x(4)-[AGL] S 19: 18.3308 7( 7) G-x(4)-V-x(1,3)-L-[DEG]-P T 20: 16.1802 11( 7) R-x(5)-R-x(3,4)-L-P Best patterns with alignements: fitness hits(seqs) Pattern A 1: 36.0227 7( 7) P-x(2,3)-P-x(4,5)-G-[FY]-x(2)-C-R-[WY]-[GN]-Y-x-[DNST] Occurences: 7(7) AGLU_CANTS : 365- 384: nfign PvihPywsy-GFhlCRWGYnN vsetq AMYG_SCHOC : 309- 328: keigl PafqPywsl-GYhqCRWGYdT iekls LYAG_HUMAN : 361- 380: dvvgy PfmpPywgl-GFhlCRWGYsS taitr LYAG_HUMAN : 361- 380: dvvgy Pfm-PpywglGFhlCRWGYsS taitr SUIS_HUMAN : 1216- 1235: evigh Pvm-PaywalGFqlCRYGYaN tsevr SUIS_RABIT : 1216- 1235: evigh PvmpPywsl-GFqlCRYGYrN tseii SUIS_RABIT : 1216- 1235: evigh Pvm-PpywslGFqlCRYGYrN tseii SUIS_RAT : 765- 784: evigf PvmpPywal-GFqlCRYGYrN tseie SUIS_RAT : 765- 784: evigf Pvm-PpywalGFqlCRYGYrN tseie YB79_YEAST : 382- 401: dltgr PflpPissi-GYhqCRWNYnD emdvl YB79_YEAST : 382- 401: dltgr Pfl-PpissiGYhqCRWNYnD emdvl B 2: 31.5314 7( 7) A-x-[GQ]-x-L-[FY]-x-D-D-[GL]-x-[STV]-x(4)-[ERS] Occurences: 7(7) AGLU_CANTS : 867- 883: qtkdy AhQfLFgDDLlVspvlE pnvtq AMYG_SCHOC : 862- 878: dndgk AqGsLYlDDGeSlvvdS sllvs LYAG_HUMAN : 853- 869: tkgge ArGeLFwDDGeSlevlE rgayt SUIS_HUMAN : 1720- 1736: ddnqm AqGsLFwDDGeSidtyE rdlyl SUIS_RABIT : 1720- 1736: ddnhm AqGsLFwDDGdTidtyE rdlyl SUIS_RAT : 376- 392: ddnqa AkGeLFwDDGqSkdsiE kkmyi YB79_YEAST : 839- 855: dtegr AvGdLYvDDGeTfgyqR geyve C 3: 29.1682 11( 7) P-x(4,5)-G-x(3)-C-R-[WY]-[GN]-Y-x-[DNST] Occurences: 11(7) AGLU_CANTS : 369- 384: npvih Pywsy-GfhlCRWGYnN vsetq AMYG_SCHOC : 313- 328: lpafq Pywsl-GyhqCRWGYdT iekls LYAG_HUMAN : 364- 380: gypfm PpywglGfhlCRWGYsS taitr LYAG_HUMAN : 365- 380: ypfmp Pywgl-GfhlCRWGYsS taitr SUIS_HUMAN : 1219- 1235: ghpvm PaywalGfqlCRYGYaN tsevr SUIS_RABIT : 1219- 1235: ghpvm PpywslGfqlCRYGYrN tseii SUIS_RABIT : 1220- 1235: hpvmp Pywsl-GfqlCRYGYrN tseii SUIS_RAT : 768- 784: gfpvm PpywalGfqlCRYGYrN tseie SUIS_RAT : 769- 784: fpvmp Pywal-GfqlCRYGYrN tseie YB79_YEAST : 385- 401: grpfl PpissiGyhqCRWNYnD emdvl YB79_YEAST : 386- 401: rpflp Pissi-GyhqCRWNYnD emdvl D 4: 28.6682 11( 7) P-x(4,5)-G-x(2,3)-C-R-[WY]-[GN]-Y-x-[DNST] Occurences: 11(7) AGLU_CANTS : 369- 384: npvih Pywsy-GfhlCRWGYnN vsetq AMYG_SCHOC : 313- 328: lpafq Pywsl-GyhqCRWGYdT iekls LYAG_HUMAN : 364- 380: gypfm PpywglGfhlCRWGYsS taitr LYAG_HUMAN : 365- 380: ypfmp Pywgl-GfhlCRWGYsS taitr SUIS_HUMAN : 1219- 1235: ghpvm PaywalGfqlCRYGYaN tsevr SUIS_RABIT : 1219- 1235: ghpvm PpywslGfqlCRYGYrN tseii SUIS_RABIT : 1220- 1235: hpvmp Pywsl-GfqlCRYGYrN tseii SUIS_RAT : 768- 784: gfpvm PpywalGfqlCRYGYrN tseie SUIS_RAT : 769- 784: fpvmp Pywal-GfqlCRYGYrN tseie YB79_YEAST : 385- 401: grpfl PpissiGyhqCRWNYnD emdvl YB79_YEAST : 386- 401: rpflp Pissi-GyhqCRWNYnD emdvl E 5: 28.5560 7( 7) N-x-Y-G-x(1,3)-H-x(1,3)-Y-x-[ADE]-x-[EKR]-x(3)-[DENS]-[AGPT] Occurences: 7(7) AGLU_CANTS : 270- 287: tpvds NmYGy--Hpi-YtEaRrgsDG klrth AMYG_SCHOC : 238- 255: dpidg NiYGv--Hpv-YlDqRydtET thavy LYAG_HUMAN : 290- 307: ptpga NlYGs--Hpf-YlAlEdggSA hgvfl SUIS_HUMAN : 1145- 1162: pgykl NsYGf--Hpy-YmAlEeegNA hgvfl SUIS_RABIT : 1145- 1162: pgykl NsYGf--Hpy-YmAlEdegNA hgvll SUIS_RAT : 694- 711: pgykl NsYGf--Hpy-YmAlEnegNA hgvll YB79_YEAST : 568- 588: ersvh NiYGlsvHeatYdAiKsiySP sdkrp F 6: 27.7446 8( 7) A-x(3,4)-L-[FY]-x-D-D-[GL]-x-[STV]-x(4)-[ERS] Occurences: 8(7) AGLU_CANTS : 867- 883: qtkdy Ahqf-LFgDDLlVspvlE pnvtq AMYG_SCHOC : 862- 878: dndgk Aqgs-LYlDDGeSlvvdS sllvs LYAG_HUMAN : 853- 869: tkgge Arge-LFwDDGeSlevlE rgayt SUIS_HUMAN : 1720- 1736: ddnqm Aqgs-LFwDDGeSidtyE rdlyl SUIS_RABIT : 1720- 1736: ddnhm Aqgs-LFwDDGdTidtyE rdlyl SUIS_RAT : 375- 392: lddnq AakgeLFwDDGqSkdsiE kkmyi SUIS_RAT : 376- 392: ddnqa Akge-LFwDDGqSkdsiE kkmyi YB79_YEAST : 839- 855: dtegr Avgd-LYvDDGeTfgyqR geyve G 7: 24.8114 10( 7) G-x-[IL]-D-[FLV]-x-[FIM]-x(2)-G-x(2,3)-P Occurences: 10(7) AGLU_CANTS : 318- 330: yraig GtLDFrFfsGdq-P assss AMYG_SCHOC : 283- 295: wrals GvIDLyFfsGpt-P kdaiq LYAG_HUMAN : 335- 347: wrstg GiLDVyIflGpe-P ksvvq SUIS_HUMAN : 319- 331: yrvtg GiLDFyIllGdt-P eqvvq SUIS_HUMAN : 1190- 1202: yrtvg GiLDFyMflGpt-P qvatk SUIS_RABIT : 319- 331: yrvig GiLDFyIflGdt-P eqvvq SUIS_RABIT : 1190- 1202: yrvig GiLDFyMflGpt-P evatq SUIS_RAT : 243- 255: yrvag GiLDFyIflGdt-P eqvvq SUIS_RAT : 739- 751: yrtig GiLDFyMflGpt-P eiatr YB79_YEAST : 356- 369: wisen GvIDVvMslGpdiP tiidk H 8: 24.7740 11( 7) P-x(4,5)-G-[FY]-x(2)-C-R-x(0,2)-Y-[DGNS] Occurences: 11(7) AGLU_CANTS : 369- 383: npvih Pywsy-GFhlCRwgYN nvset AMYG_SCHOC : 313- 327: lpafq Pywsl-GYhqCRwgYD tiekl LYAG_HUMAN : 364- 379: gypfm PpywglGFhlCRwgYS stait LYAG_HUMAN : 365- 379: ypfmp Pywgl-GFhlCRwgYS stait SUIS_HUMAN : 1219- 1232: ghpvm PaywalGFqlCR--YG yants SUIS_RABIT : 1219- 1232: ghpvm PpywslGFqlCR--YG yrnts SUIS_RABIT : 1220- 1232: hpvmp Pywsl-GFqlCR--YG yrnts SUIS_RAT : 768- 781: gfpvm PpywalGFqlCR--YG yrnts SUIS_RAT : 769- 781: fpvmp Pywal-GFqlCR--YG yrnts YB79_YEAST : 385- 400: grpfl PpissiGYhqCRwnYN demdv YB79_YEAST : 386- 400: rpflp Pissi-GYhqCRwnYN demdv I 9: 23.9004 7( 7) Y-x(1,2)-I-x-D-x-[AV]-I-x(2)-[AGNPS]-x-[APT] Occurences: 7(7) AGLU_CANTS : 444- 457: dnhqh YipIiDmAIpkApT ndtdv AMYG_SCHOC : 388- 401: knnqh YvpIlDaAIyvPnP nnatd LYAG_HUMAN : 438- 451: qggrr YmmIvDpAIssSgP agsyr SUIS_HUMAN : 1292- 1305: gegmr YiiIlDpAIsgNeT ktypa SUIS_RABIT : 1292- 1305: gegmr YiiIlDpAIsgNeT rpypa SUIS_RAT : 841- 854: kdgmk YivIlDpAIsgNeT qpypa YB79_YEAST : 471- 483: hlkkd Ye-IsDrVIneNvA vkdhn J 10: 23.1233 9( 7) P-x(4,5)-G-x-H-x(1,2)-R-x-[GN]-Y Occurences: 9(7) AGLU_CANTS : 369- 382: npvih Pywsy-GfHlcRwGY nnvse AMYG_SCHOC : 313- 326: lpafq Pywsl-GyHqcRwGY dtiek LYAG_HUMAN : 364- 378: gypfm PpywglGfHlcRwGY sstai LYAG_HUMAN : 365- 378: ypfmp Pywgl-GfHlcRwGY sstai SUIS_HUMAN : 783- 795: vdmyl Padki-GlHl-RgGY iipiq SUIS_RABIT : 783- 795: vemsl Padki-GlHl-RgGY iipiq SUIS_RAT : 333- 345: inmyl Pgdki-GlHl-RgGY iiptq YB79_YEAST : 385- 399: grpfl PpissiGyHqcRwNY ndemd YB79_YEAST : 386- 399: rpflp Pissi-GyHqcRwNY ndemd K 11: 23.1233 7( 7) P-x(3,4)-G-x-H-x(1,2)-R-x-[GN]-Y Occurences: 7(7) AGLU_CANTS : 369- 382: npvih PywsyGfHlcRwGY nnvse AMYG_SCHOC : 313- 326: lpafq PywslGyHqcRwGY dtiek LYAG_HUMAN : 365- 378: ypfmp PywglGfHlcRwGY sstai SUIS_HUMAN : 783- 795: vdmyl PadkiGlHl-RgGY iipiq SUIS_RABIT : 783- 795: vemsl PadkiGlHl-RgGY iipiq SUIS_RAT : 333- 345: inmyl PgdkiGlHl-RgGY iiptq YB79_YEAST : 386- 399: rpflp PissiGyHqcRwNY ndemd L 12: 22.7550 7( 7) P-x(3,4)-G-x(3)-[ADG]-V-x(0,1)-F-[ILPV]-x(3)-[DNST] Occurences: 7(7) AGLU_CANTS : 465- 480: tdvyy Pgtr-GdelDV-FIknrN gsqyi AMYG_SCHOC : 411- 426: dneyq Pfhy-GnetDV-FLknpD gslyi LYAG_HUMAN : 457- 472: agsyr Pyde-GlrrGV-FItneT gqpli SUIS_HUMAN : 1309- 1325: etkty PaferGqqnDV-FVkwpN tndic SUIS_RABIT : 1309- 1325: etrpy PafdrGeakDV-FVkwpN tsdic SUIS_RAT : 858- 874: etqpy PaferGiqkDV-FVkwpN tndic YB79_YEAST : 78- 94: iikti Prle-GddiAVqFPfslS flqdh M 13: 22.7210 11( 7) P-x(2,4)-L-[GIL]-x(2)-L-x(3)-G-x(4)-[ASTV]-x(3)-[DEPQ] Occurences: 11(7) AGLU_CANTS : 953- 973: etaqs Pyg--LIvnLndqGeakqTfylD dgmtp AMYG_SCHOC : 849- 869: esrqn Pfg--LIvaLdndGkaqgSlylD dgesl LYAG_HUMAN : 364- 386: gypfm PpywgLGfhLcrwGysstAitrQ vvenm LYAG_HUMAN : 365- 386: ypfmp Pywg-LGfhLcrwGysstAitrQ vvenm SUIS_HUMAN : 1219- 1241: ghpvm PaywaLGfqLcryGyantSevrE lydam SUIS_RABIT : 1219- 1241: ghpvm PpywsLGfqLcryGyrntSeiiE lyegm SUIS_RABIT : 1220- 1241: hpvmp Pyws-LGfqLcryGyrntSeiiE lyegm SUIS_RAT : 768- 790: gfpvm PpywaLGfqLcryGyrntSeieQ lyndm SUIS_RAT : 769- 790: fpvmp Pywa-LGfqLcryGyrntSeieQ lyndm YB79_YEAST : 443- 465: kqhsf PnpkrLLskLkklGrnlvVlidP hlkkd YB79_YEAST : 445- 465: hsfpn Pkr--LLskLkklGrnlvVlidP hlkkd N 14: 22.0257 8( 7) A-x(3,5)-L-x(0,2)-D-D-G-x-[ST] Occurences: 8(7) AGLU_CANTS : 966- 977: ndqge AkqtfyL--DDGmT paptp AMYG_SCHOC : 862- 873: dndgk AqgslyL--DDGeS lvvds AMYG_SCHOC : 862- 873: dndgk Aqgs--LylDDGeS lvvds LYAG_HUMAN : 853- 864: tkgge Arge--LfwDDGeS levle SUIS_HUMAN : 1720- 1731: ddnqm Aqgs--LfwDDGeS idtye SUIS_RABIT : 1720- 1731: ddnhm Aqgs--LfwDDGdT idtye SUIS_RAT : 375- 387: lddnq Aakge-LfwDDGqS kdsie SUIS_RAT : 376- 387: ddnqa Akge--LfwDDGqS kdsie YB79_YEAST : 839- 850: dtegr Avgd--LyvDDGeT fgyqr O 15: 21.1039 7( 7) G-[FY]-x(2)-C-R-x(0,2)-Y-[DGNS] Occurences: 7(7) AGLU_CANTS : 374- 383: pywsy GFhlCRwgYN nvset AMYG_SCHOC : 318- 327: pywsl GYhqCRwgYD tiekl LYAG_HUMAN : 370- 379: pywgl GFhlCRwgYS stait SUIS_HUMAN : 1225- 1232: aywal GFqlCR--YG yants SUIS_RABIT : 1225- 1232: pywsl GFqlCR--YG yrnts SUIS_RAT : 774- 781: pywal GFqlCR--YG yrnts YB79_YEAST : 391- 400: pissi GYhqCRwnYN demdv P 16: 19.4533 7( 7) G-x-H-x(1,2)-R-x-[GN]-Y Occurences: 7(7) AGLU_CANTS : 374- 382: pywsy GfHlcRwGY nnvse AMYG_SCHOC : 318- 326: pywsl GyHqcRwGY dtiek LYAG_HUMAN : 370- 378: pywgl GfHlcRwGY sstai SUIS_HUMAN : 788- 795: padki GlHl-RgGY iipiq SUIS_RABIT : 788- 795: padki GlHl-RgGY iipiq SUIS_RAT : 338- 345: pgdki GlHl-RgGY iiptq YB79_YEAST : 391- 399: pissi GyHqcRwNY ndemd Q 17: 18.8007 7( 7) G-x(5)-T-P-x(0,1)-L-x-[APV] Occurences: 7(7) AGLU_CANTS : 651- 661: yaihn GihiseTP-LnV nldkk AMYG_SCHOC : 768- 779: nqffv GdglvvTPvLeP gvdkv LYAG_HUMAN : 747- 758: hqllw GealliTPvLqA gkaev SUIS_HUMAN : 1631- 1642: kqflw GpafmvTPvLeP yvqtv SUIS_RABIT : 1631- 1642: lqflw GpafmvTPvLeP yttvv SUIS_RAT : 287- 298: tqflw GpalliTPvLrP gvenv YB79_YEAST : 646- 657: gadia GfaedpTPeLiA rwyqa R 18: 18.7655 9( 7) Q-x-Y-x(4)-G-x(4,5)-P-x(4)-[AGL] Occurences: 9(7) AGLU_CANTS : 122- 140: ydtak QqYqlpnGlifdrPgdnpA diqng AGLU_CANTS : 356- 374: pntai QqYvnfiGnpvihPywsyG fhlcr AMYG_SCHOC : 300- 318: pkdai QqYvkeiGlpafqPywslG yhqcr LYAG_HUMAN : 352- 369: pksvv QqYldvvGypfm-PpywgL gfhlc LYAG_HUMAN : 352- 370: pksvv QqYldvvGypfmpPywglG fhlcr SUIS_HUMAN : 336- 353: peqvv QqYqqlvGlpam-PaywnL gfqls SUIS_RABIT : 336- 353: peqvv QqYqeliGrpam-PaywsL gfqls SUIS_RABIT : 1207- 1224: pevat QqYheviGhpvm-PpywsL gfqlc SUIS_RABIT : 1207- 1225: pevat QqYheviGhpvmpPywslG fqlcr SUIS_RAT : 260- 277: peqvv QqYqefnGrpam-PahweA wivdt YB79_YEAST : 741- 758: yhidn QfYwsnsGllvk-PvtepG qsete S 19: 18.3308 7( 7) G-x(4)-V-x(1,3)-L-[DEG]-P Occurences: 7(7) AGLU_CANTS : 873- 884: hqflf GddllVspvLEP nvtqi AMYG_SCHOC : 768- 779: nqffv GdglvVtpvLEP gvdkv LYAG_HUMAN : 334- 345: swrst GgildVyifLGP epksv SUIS_HUMAN : 1631- 1642: kqflw GpafmVtpvLEP yvqtv SUIS_RABIT : 1631- 1642: lqflw GpafmVtpvLEP yttvv SUIS_RAT : 838- 847: rirkd GmkyiVi--LDP aisgn YB79_YEAST : 356- 366: wisen GvidvVms-LGP dipti T 20: 16.1802 11( 7) R-x(5)-R-x(3,4)-L-P Occurences: 11(7) AGLU_CANTS : 821- 832: vanas RiainkRyei-LP slysh AMYG_SCHOC : 717- 728: vaeat RtsmaiRyll-LP yyytl LYAG_HUMAN : 696- 707: aqqam RkaltlRyal-LP hlytl SUIS_HUMAN : 686- 697: lvkss RqyltiRytl-LP flytl SUIS_HUMAN : 771- 783: esgak RpwrkqRvdmyLP adkig SUIS_HUMAN : 1580- 1591: faems RnilniRytl-LP yfytq SUIS_RABIT : 686- 697: lvkss RhylniRytl-LP flytl SUIS_RABIT : 771- 783: etgak RpwrkqRvemsLP adkig SUIS_RABIT : 1580- 1591: fvemt RnvlniRytl-LP yfytq SUIS_RAT : 321- 333: etgik RpwrkeRinmyLP gdkig YB79_YEAST : 694- 705: lksiv RdiiqlRyfl-LP tlytm Number of patterns evaluated by Pratt:66801 Total running time: 109 seconds