------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 13 sequences from file GLYCOSYL_HYDROL_F2_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 13 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GLYCOSYL_HYDROL_F2_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: BGA2_ECOLI 1031 BGAL_CLOAB 897 BGAL_ECOLI 1023 BGAL_KLEPN 1034 BGAL_KLULA 1025 BGAL_LACDE 1006 BGAL_LEULA 626 BGAL_STRTR 1026 BGAL_THETU 716 BGLR_ECOLI 603 BGLR_HUMAN 651 BGLR_MOUSE 648 BGLR_RAT 648 Pratt run started at Thu Feb 6 19:36:30 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 20.8503 13( 13) N-x(2)-R-x(2)-H-Y-P 2: 20.3503 13( 13) N-H-x(5)-W-x(3,4)-N-E 3: 20.3503 13( 13) D-x(5)-G-x(2)-R-x-V-x(1,2)-L 4: 16.6802 13( 13) R-x(2)-H-Y-P 5: 16.1802 14( 13) D-x(5)-G-x(2)-R-x(0,1)-V 6: 16.1802 13( 13) H-x(5)-W-x(3,4)-N-E 7: 16.1802 13( 13) G-x(2)-R-x-V-x(1,2)-L 8: 16.1802 15( 13) G-x(1,2)-R-x-V-x-L 9: 15.6802 15( 13) N-H-x(4,5)-W-x(3,4)-N 10: 15.6802 16( 13) G-x(1,2)-R-x-V-x(0,1)-L 11: 15.1802 17( 13) I-x(0,2)-I-x(3,4)-G-x(5)-G 12: 14.6802 13( 13) G-x-N-x(0,2)-R-x(0,2)-H 13: 12.5102 13( 13) H-Y-P 14: 12.5102 20( 13) R-x-V-x-L 15: 12.0102 19( 13) L-x(2,3)-G-x-N 16: 12.0102 15( 13) G-x(2)-R-x(0,1)-V 17: 12.0102 15( 13) G-x(3)-W-x(2,3)-D 18: 12.0102 27( 13) D-x(4,5)-V-x(2)-E 19: 12.0102 27( 13) I-x(3,4)-G-x(5)-G 20: 12.0102 16( 13) W-x(3,4)-N-E Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 37.1674 13( 13) N-H-[AP]-[ACS]-[IV]-[ILV]-[FILM]-W-x(3,4)-N-E-[APS] B 2: 32.9973 13( 13) H-[AP]-[ACS]-[IV]-[ILV]-[FILM]-W-x(3,4)-N-E-[APS] C 3: 30.3783 13( 13) N-H-[AP]-[ACS]-[IV]-[ILV]-[FILM]-W-x(3,4)-N D 4: 26.2454 13( 13) D-x(5)-G-[IL]-x-R-[DES]-V-x(1,2)-L E 5: 26.2082 13( 13) H-[AP]-[ACS]-[IV]-[ILV]-[FILM]-W-x(3,4)-N F 6: 26.1579 13( 13) N-x(2)-R-[CNT]-[ACS]-H-Y-P G 7: 22.7534 13( 13) D-x(5)-G-[IL]-x-R-x(0,1)-V-x-[IL] H 8: 22.4693 13( 13) N-H-x(4,5)-W-x(3,4)-N-E-[APS] I 9: 22.0753 13( 13) G-[IL]-x-R-[DES]-V-x(1,2)-L J 10: 21.9879 13( 13) R-[CNT]-[ACS]-H-Y-P K 11: 18.5834 13( 13) G-[IL]-x-R-x(0,1)-V-x-[IL] L 12: 18.3680 13( 13) G-x(1,2)-R-[DEST]-V-x-L M 13: 17.8680 13( 13) G-x(1,2)-R-[DEST]-V-x(0,1)-L N 14: 17.2776 13( 13) G-[ALV]-N-x(0,2)-R-x(0,2)-H O 15: 15.1802 17( 13) I-x(0,2)-I-x(3,4)-G-x(5)-G P 16: 14.6571 21( 13) I-x(3,4)-G-x-[ADE]-x(3)-G Q 17: 14.3973 17( 13) R-[ADEST]-V-x-L R 18: 14.2102 16( 13) W-x(3,4)-N-E-[APST] S 19: 12.5102 13( 13) H-Y-P T 20: 12.0102 19( 13) L-x(2,3)-G-x-N Best patterns with alignements: fitness hits(seqs) Pattern A 1: 37.1674 13( 13) N-H-[AP]-[ACS]-[IV]-[ILV]-[FILM]-W-x(3,4)-N-E-[APS] Occurences: 13(13) BGA2_ECOLI : 437- 450: ihaqk NHPSIIIWslg-NES gygcn BGAL_CLOAB : 447- 460: verdk NHPSVLIWscg-NES yaged BGAL_ECOLI : 449- 462: vqrdr NHPSVIIWslg-NES ghgan BGAL_KLEPN : 456- 469: vqsnr NHPCIIIWslg-NES ggggn BGAL_KLULA : 470- 483: vlrdv NHPSIIIWslg-NEA cygrn BGAL_LACDE : 452- 465: mardk NHASILIWslg-NES yagtv BGAL_LEULA : 454- 467: yewfk NHPSIIFWslg-NES yaged BGAL_STRTR : 446- 459: fqrdk NHASVIIWscg-NES yagkd BGAL_THETU : 376- 390: itrdw NHPSIILWgvriNES qddda BGLR_ECOLI : 401- 414: iardk NHPSVVMWsia-NEP dtrpq BGLR_HUMAN : 439- 452: vrrdk NHPAVVMWsva-NEP ashle BGLR_MOUSE : 435- 448: vrrdk NHPAVVMWsva-NEP ssalk BGLR_RAT : 435- 448: vrrdk NHPAVVMWsva-NEP vsslk B 2: 32.9973 13( 13) H-[AP]-[ACS]-[IV]-[ILV]-[FILM]-W-x(3,4)-N-E-[APS] Occurences: 13(13) BGA2_ECOLI : 438- 450: haqkn HPSIIIWslg-NES gygcn BGAL_CLOAB : 448- 460: erdkn HPSVLIWscg-NES yaged BGAL_ECOLI : 450- 462: qrdrn HPSVIIWslg-NES ghgan BGAL_KLEPN : 457- 469: qsnrn HPCIIIWslg-NES ggggn BGAL_KLULA : 471- 483: lrdvn HPSIIIWslg-NEA cygrn BGAL_LACDE : 453- 465: ardkn HASILIWslg-NES yagtv BGAL_LEULA : 455- 467: ewfkn HPSIIFWslg-NES yaged BGAL_STRTR : 447- 459: qrdkn HASVIIWscg-NES yagkd BGAL_THETU : 377- 390: trdwn HPSIILWgvriNES qddda BGLR_ECOLI : 402- 414: ardkn HPSVVMWsia-NEP dtrpq BGLR_HUMAN : 440- 452: rrdkn HPAVVMWsva-NEP ashle BGLR_MOUSE : 436- 448: rrdkn HPAVVMWsva-NEP ssalk BGLR_RAT : 436- 448: rrdkn HPAVVMWsva-NEP vsslk C 3: 30.3783 13( 13) N-H-[AP]-[ACS]-[IV]-[ILV]-[FILM]-W-x(3,4)-N Occurences: 13(13) BGA2_ECOLI : 437- 448: ihaqk NHPSIIIWslg-N esgyg BGAL_CLOAB : 447- 458: verdk NHPSVLIWscg-N esyag BGAL_ECOLI : 449- 460: vqrdr NHPSVIIWslg-N esghg BGAL_KLEPN : 456- 467: vqsnr NHPCIIIWslg-N esggg BGAL_KLULA : 470- 481: vlrdv NHPSIIIWslg-N eacyg BGAL_LACDE : 452- 463: mardk NHASILIWslg-N esyag BGAL_LEULA : 454- 465: yewfk NHPSIIFWslg-N esyag BGAL_STRTR : 446- 457: fqrdk NHASVIIWscg-N esyag BGAL_THETU : 376- 388: itrdw NHPSIILWgvriN esqdd BGLR_ECOLI : 401- 412: iardk NHPSVVMWsia-N epdtr BGLR_HUMAN : 439- 450: vrrdk NHPAVVMWsva-N epash BGLR_MOUSE : 435- 446: vrrdk NHPAVVMWsva-N epssa BGLR_RAT : 435- 446: vrrdk NHPAVVMWsva-N epvss D 4: 26.2454 13( 13) D-x(5)-G-[IL]-x-R-[DES]-V-x(1,2)-L Occurences: 13(13) BGA2_ECOLI : 190- 203: yvedq DmwwsaGIfRDVy-L vgkhl BGAL_CLOAB : 202- 215: wiedq DfwrfsGIfRDVy-L yavpe BGAL_ECOLI : 201- 214: yledq DmwrmsGIfRDVs-L lhkpt BGAL_ECOLI : 201- 215: yledq DmwrmsGIfRDVslL hkptt BGAL_KLEPN : 207- 220: wledq DmwrmsGIfRSVw-L lnkpq BGAL_KLEPN : 207- 221: wledq DmwrmsGIfRSVwlL nkpqq BGAL_KLULA : 187- 200: yiedq DqwwlsGIyRDVs-L lklpk BGAL_KLULA : 187- 201: yiedq DqwwlsGIyRDVslL klpkk BGAL_LACDE : 206- 219: wledq DfwrmsGLfRSVt-L qakpr BGAL_LEULA : 209- 223: fiedq DmfrfsGIfRDVniL aepas BGAL_STRTR : 201- 214: wledq DfwrlyGIfRDVy-L yaipk BGAL_THETU : 140- 153: kggqi DyltygGIyREVs-L giydd BGLR_ECOLI : 163- 176: qsyfh DffnyaGIhRSVm-L yttpn BGLR_HUMAN : 207- 220: qntyf DffnyaGLqRSVl-L yttpt BGLR_MOUSE : 206- 219: qdtsf DffnyaGLhRSVv-L yttpt BGLR_RAT : 206- 219: qdisf DffnyaGLhRSVv-L yttpt E 5: 26.2082 13( 13) H-[AP]-[ACS]-[IV]-[ILV]-[FILM]-W-x(3,4)-N Occurences: 13(13) BGA2_ECOLI : 438- 448: haqkn HPSIIIWslg-N esgyg BGAL_CLOAB : 448- 458: erdkn HPSVLIWscg-N esyag BGAL_ECOLI : 450- 460: qrdrn HPSVIIWslg-N esghg BGAL_KLEPN : 457- 467: qsnrn HPCIIIWslg-N esggg BGAL_KLULA : 471- 481: lrdvn HPSIIIWslg-N eacyg BGAL_LACDE : 453- 463: ardkn HASILIWslg-N esyag BGAL_LEULA : 455- 465: ewfkn HPSIIFWslg-N esyag BGAL_STRTR : 447- 457: qrdkn HASVIIWscg-N esyag BGAL_THETU : 377- 388: trdwn HPSIILWgvriN esqdd BGLR_ECOLI : 402- 412: ardkn HPSVVMWsia-N epdtr BGLR_HUMAN : 440- 450: rrdkn HPAVVMWsva-N epash BGLR_MOUSE : 436- 446: rrdkn HPAVVMWsva-N epssa BGLR_RAT : 436- 446: rrdkn HPAVVMWsva-N epvss F 6: 26.1579 13( 13) N-x(2)-R-[CNT]-[ACS]-H-Y-P Occurences: 13(13) BGA2_ECOLI : 370- 378: kqhni NsvRTAHYP ndprf BGAL_CLOAB : 375- 383: kqhni NavRTSHYP nqslw BGAL_ECOLI : 385- 393: kqnnf NavRCSHYP nhplw BGAL_KLEPN : 392- 400: kqnnf NavRCSHYP naprw BGAL_KLULA : 383- 391: kkfni NavRNSHYP nhpkv BGAL_LACDE : 379- 387: krsni NavRCSHYP nqslf BGAL_LEULA : 382- 390: lanni NadRTCHYP dqlpw BGAL_STRTR : 374- 382: kqhni NavRTSHYP nqtrw BGAL_THETU : 320- 328: nelhl NivRTSHYP qskhf BGLR_ECOLI : 324- 332: dwiga NsyRTSHYP yaeem BGLR_HUMAN : 379- 387: rwlga NafRTSHYP yaeev BGLR_MOUSE : 375- 383: rwlga NsfRTSHYP yseev BGLR_RAT : 375- 383: rwlga NsfRTSHYP yseev G 7: 22.7534 13( 13) D-x(5)-G-[IL]-x-R-x(0,1)-V-x-[IL] Occurences: 13(13) BGA2_ECOLI : 190- 203: yvedq DmwwsaGIfRdVyL vgkhl BGAL_CLOAB : 202- 215: wiedq DfwrfsGIfRdVyL yavpe BGAL_ECOLI : 201- 214: yledq DmwrmsGIfRdVsL lhkpt BGAL_KLEPN : 207- 220: wledq DmwrmsGIfRsVwL lnkpq BGAL_KLULA : 187- 200: yiedq DqwwlsGIyRdVsL lklpk BGAL_LACDE : 206- 219: wledq DfwrmsGLfRsVtL qakpr BGAL_LEULA : 209- 222: fiedq DmfrfsGIfRdVnI laepa BGAL_STRTR : 201- 214: wledq DfwrlyGIfRdVyL yaipk BGAL_THETU : 140- 153: kggqi DyltygGIyReVsL giydd BGLR_ECOLI : 163- 176: qsyfh DffnyaGIhRsVmL yttpn BGLR_HUMAN : 207- 220: qntyf DffnyaGLqRsVlL yttpt BGLR_MOUSE : 206- 219: qdtsf DffnyaGLhRsVvL yttpt BGLR_RAT : 206- 219: qdisf DffnyaGLhRsVvL yttpt H 8: 22.4693 13( 13) N-H-x(4,5)-W-x(3,4)-N-E-[APS] Occurences: 13(13) BGA2_ECOLI : 437- 450: ihaqk NHpsiiiWslg-NES gygcn BGAL_CLOAB : 447- 460: verdk NHpsvliWscg-NES yaged BGAL_ECOLI : 449- 462: vqrdr NHpsviiWslg-NES ghgan BGAL_KLEPN : 456- 469: vqsnr NHpciiiWslg-NES ggggn BGAL_KLULA : 470- 483: vlrdv NHpsiiiWslg-NEA cygrn BGAL_LACDE : 452- 465: mardk NHasiliWslg-NES yagtv BGAL_LEULA : 454- 467: yewfk NHpsiifWslg-NES yaged BGAL_STRTR : 446- 459: fqrdk NHasviiWscg-NES yagkd BGAL_THETU : 376- 390: itrdw NHpsiilWgvriNES qddda BGLR_ECOLI : 401- 414: iardk NHpsvvmWsia-NEP dtrpq BGLR_HUMAN : 439- 452: vrrdk NHpavvmWsva-NEP ashle BGLR_MOUSE : 435- 448: vrrdk NHpavvmWsva-NEP ssalk BGLR_RAT : 435- 448: vrrdk NHpavvmWsva-NEP vsslk I 9: 22.0753 13( 13) G-[IL]-x-R-[DES]-V-x(1,2)-L Occurences: 13(13) BGA2_ECOLI : 196- 203: mwwsa GIfRDVy-L vgkhl BGAL_CLOAB : 208- 215: fwrfs GIfRDVy-L yavpe BGAL_ECOLI : 207- 214: mwrms GIfRDVs-L lhkpt BGAL_ECOLI : 207- 215: mwrms GIfRDVslL hkptt BGAL_KLEPN : 213- 220: mwrms GIfRSVw-L lnkpq BGAL_KLEPN : 213- 221: mwrms GIfRSVwlL nkpqq BGAL_KLULA : 193- 200: qwwls GIyRDVs-L lklpk BGAL_KLULA : 193- 201: qwwls GIyRDVslL klpkk BGAL_LACDE : 212- 219: fwrms GLfRSVt-L qakpr BGAL_LEULA : 215- 223: mfrfs GIfRDVniL aepas BGAL_STRTR : 207- 214: fwrly GIfRDVy-L yaipk BGAL_THETU : 146- 153: yltyg GIyREVs-L giydd BGLR_ECOLI : 169- 176: ffnya GIhRSVm-L yttpn BGLR_HUMAN : 213- 220: ffnya GLqRSVl-L yttpt BGLR_MOUSE : 212- 219: ffnya GLhRSVv-L yttpt BGLR_RAT : 212- 219: ffnya GLhRSVv-L yttpt J 10: 21.9879 13( 13) R-[CNT]-[ACS]-H-Y-P Occurences: 13(13) BGA2_ECOLI : 373- 378: ninsv RTAHYP ndprf BGAL_CLOAB : 378- 383: ninav RTSHYP nqslw BGAL_ECOLI : 388- 393: nfnav RCSHYP nhplw BGAL_KLEPN : 395- 400: nfnav RCSHYP naprw BGAL_KLULA : 386- 391: ninav RNSHYP nhpkv BGAL_LACDE : 382- 387: ninav RCSHYP nqslf BGAL_LEULA : 385- 390: ninad RTCHYP dqlpw BGAL_STRTR : 377- 382: ninav RTSHYP nqtrw BGAL_THETU : 323- 328: hlniv RTSHYP qskhf BGLR_ECOLI : 327- 332: gansy RTSHYP yaeem BGLR_HUMAN : 382- 387: ganaf RTSHYP yaeev BGLR_MOUSE : 378- 383: gansf RTSHYP yseev BGLR_RAT : 378- 383: gansf RTSHYP yseev K 11: 18.5834 13( 13) G-[IL]-x-R-x(0,1)-V-x-[IL] Occurences: 13(13) BGA2_ECOLI : 196- 203: mwwsa GIfRdVyL vgkhl BGAL_CLOAB : 208- 215: fwrfs GIfRdVyL yavpe BGAL_ECOLI : 207- 214: mwrms GIfRdVsL lhkpt BGAL_KLEPN : 213- 220: mwrms GIfRsVwL lnkpq BGAL_KLULA : 193- 200: qwwls GIyRdVsL lklpk BGAL_LACDE : 212- 219: fwrms GLfRsVtL qakpr BGAL_LEULA : 215- 222: mfrfs GIfRdVnI laepa BGAL_STRTR : 207- 214: fwrly GIfRdVyL yaipk BGAL_THETU : 146- 153: yltyg GIyReVsL giydd BGLR_ECOLI : 169- 176: ffnya GIhRsVmL yttpn BGLR_HUMAN : 213- 220: ffnya GLqRsVlL yttpt BGLR_MOUSE : 212- 219: ffnya GLhRsVvL yttpt BGLR_RAT : 212- 219: ffnya GLhRsVvL yttpt L 12: 18.3680 13( 13) G-x(1,2)-R-[DEST]-V-x-L Occurences: 13(13) BGA2_ECOLI : 196- 203: mwwsa GifRDVyL vgkhl BGAL_CLOAB : 208- 215: fwrfs GifRDVyL yavpe BGAL_ECOLI : 207- 214: mwrms GifRDVsL lhkpt BGAL_KLEPN : 213- 220: mwrms GifRSVwL lnkpq BGAL_KLULA : 193- 200: qwwls GiyRDVsL lklpk BGAL_LACDE : 212- 219: fwrms GlfRSVtL qakpr BGAL_LEULA : 327- 333: vpyqf Gf-RTVeL rddkv BGAL_STRTR : 207- 214: fwrly GifRDVyL yaipk BGAL_THETU : 146- 153: yltyg GiyREVsL giydd BGLR_ECOLI : 169- 176: ffnya GihRSVmL yttpn BGLR_HUMAN : 213- 220: ffnya GlqRSVlL yttpt BGLR_MOUSE : 212- 219: ffnya GlhRSVvL yttpt BGLR_RAT : 212- 219: ffnya GlhRSVvL yttpt M 13: 17.8680 13( 13) G-x(1,2)-R-[DEST]-V-x(0,1)-L Occurences: 13(13) BGA2_ECOLI : 196- 203: mwwsa GifRDVyL vgkhl BGAL_CLOAB : 208- 215: fwrfs GifRDVyL yavpe BGAL_ECOLI : 207- 214: mwrms GifRDVsL lhkpt BGAL_KLEPN : 213- 220: mwrms GifRSVwL lnkpq BGAL_KLULA : 193- 200: qwwls GiyRDVsL lklpk BGAL_LACDE : 212- 219: fwrms GlfRSVtL qakpr BGAL_LEULA : 327- 333: vpyqf Gf-RTVeL rddkv BGAL_STRTR : 207- 214: fwrly GifRDVyL yaipk BGAL_THETU : 146- 153: yltyg GiyREVsL giydd BGLR_ECOLI : 169- 176: ffnya GihRSVmL yttpn BGLR_HUMAN : 213- 219: ffnya GlqRSV-L lyttp BGLR_HUMAN : 213- 220: ffnya GlqRSVlL yttpt BGLR_MOUSE : 212- 219: ffnya GlhRSVvL yttpt BGLR_RAT : 212- 219: ffnya GlhRSVvL yttpt N 14: 17.2776 13( 13) G-[ALV]-N-x(0,2)-R-x(0,2)-H Occurences: 13(13) BGA2_ECOLI : 338- 342: yvmlh GVN--R--H dndhr BGAL_CLOAB : 343- 347: riifk GVN--R--H efsar BGAL_ECOLI : 353- 357: pllir GVN--R--H ehhpl BGAL_ECOLI : 353- 359: pllir GVN--RheH hplhg BGAL_KLEPN : 360- 364: pllir GVN--R--H ehhhl BGAL_KLEPN : 360- 366: pllir GVN--RheH hhlrg BGAL_KLULA : 351- 355: dilfr GVN--R--H dhhpr BGAL_KLULA : 351- 357: dilfr GVN--RhdH hprfg BGAL_LACDE : 347- 351: rivfk GAN--R--H efdsk BGAL_LEULA : 350- 354: rlvin GVN--R--H ewnah BGAL_STRTR : 342- 346: rivfk GVN--R--H efnar BGAL_THETU : 287- 291: klklr GLN--R--H qsypy BGLR_ECOLI : 322- 330: lmdwi GANsyRtsH ypyae BGLR_HUMAN : 377- 385: llrwl GANafRtsH ypyae BGLR_MOUSE : 373- 381: llrwl GANsfRtsH ypyse BGLR_RAT : 373- 381: llrwl GANsfRtsH ypyse O 15: 15.1802 17( 13) I-x(0,2)-I-x(3,4)-G-x(5)-G Occurences: 17(13) BGA2_ECOLI : 441- 453: knhps Ii-Iwsl-GnesgyG cnira BGA2_ECOLI : 441- 453: knhps I--IiwslGnesgyG cnira BGA2_ECOLI : 442- 453: nhpsi I--Iwsl-GnesgyG cnira BGAL_CLOAB : 78- 91: fdvsw IdyIevp-GhiqlqG ydkcq BGAL_ECOLI : 454- 465: nhpsv I--Iwsl-GnesghG anhda BGAL_KLEPN : 460- 472: rnhpc Ii-Iwsl-GnesggG gnhea BGAL_KLEPN : 460- 472: rnhpc I--IiwslGnesggG gnhea BGAL_KLEPN : 461- 472: nhpci I--Iwsl-GnesggG gnhea BGAL_KLULA : 474- 486: vnhps Ii-Iwsl-GneacyG rnhka BGAL_KLULA : 474- 486: vnhps I--IiwslGneacyG rnhka BGAL_KLULA : 475- 486: nhpsi I--Iwsl-GneacyG rnhka BGAL_LACDE : 456- 468: knhas Il-Iwsl-GnesyaG tvfaq BGAL_LEULA : 458- 470: knhps I--IfwslGnesyaG ediaa BGAL_STRTR : 451- 462: nhasv I--Iwsc-GnesyaG kdiad BGAL_THETU : 694- 706: finev Ik-Ieie-GpaklqG pneva BGLR_ECOLI : 500- 512: klhqp Ii-Itey-GvdtlaG lhsmy BGLR_ECOLI : 500- 512: klhqp I--IiteyGvdtlaG lhsmy BGLR_ECOLI : 501- 512: lhqpi I--Itey-GvdtlaG lhsmy BGLR_HUMAN : 536- 548: kyqkp I--IqseyGaetiaG fhqdp BGLR_MOUSE : 532- 544: thqkp I--IqseyGadaipG ihedp BGLR_RAT : 532- 544: myqkp I--IqseyGadavsG lhedp P 16: 14.6571 21( 13) I-x(3,4)-G-x-[ADE]-x(3)-G Occurences: 21(13) BGA2_ECOLI : 442- 453: nhpsi IiwslGnEsgyG cnira BGA2_ECOLI : 443- 453: hpsii Iwsl-GnEsgyG cnira BGAL_CLOAB : 453- 463: hpsvl Iwsc-GnEsyaG ediyq BGAL_ECOLI : 454- 465: nhpsv IiwslGnEsghG anhda BGAL_ECOLI : 455- 465: hpsvi Iwsl-GnEsghG anhda BGAL_KLEPN : 461- 472: nhpci IiwslGnEsggG gnhea BGAL_KLEPN : 462- 472: hpcii Iwsl-GnEsggG gnhea BGAL_KLULA : 475- 486: nhpsi IiwslGnEacyG rnhka BGAL_KLULA : 476- 486: hpsii Iwsl-GnEacyG rnhka BGAL_KLULA : 548- 559: fekpl IlceyGhAmgnG pgslk BGAL_LACDE : 458- 468: hasil Iwsl-GnEsyaG tvfaq BGAL_LEULA : 459- 470: nhpsi IfwslGnEsyaG ediaa BGAL_STRTR : 265- 275: sdyeg Ivte-GdAsvnG dgels BGAL_STRTR : 451- 462: nhasv IiwscGnEsyaG kdiad BGAL_STRTR : 452- 462: hasvi Iwsc-GnEsyaG kdiad BGAL_THETU : 696- 706: nevik Ieie-GpAklqG pneva BGLR_ECOLI : 501- 512: lhqpi IiteyGvDtlaG lhsmy BGLR_ECOLI : 502- 512: hqpii Itey-GvDtlaG lhsmy BGLR_HUMAN : 537- 548: yqkpi IqseyGaEtiaG fhqdp BGLR_MOUSE : 533- 544: hqkpi IqseyGaDaipG ihedp BGLR_RAT : 533- 544: yqkpi IqseyGaDavsG lhedp Q 17: 14.3973 17( 13) R-[ADEST]-V-x-L Occurences: 17(13) BGA2_ECOLI : 199- 203: sagif RDVyL vgkhl BGAL_CLOAB : 211- 215: fsgif RDVyL yavpe BGAL_ECOLI : 210- 214: msgif RDVsL lhkpt BGAL_KLEPN : 216- 220: msgif RSVwL lnkpq BGAL_KLEPN : 703- 707: lpega RAVwL tlevt BGAL_KLULA : 196- 200: lsgiy RDVsL lklpk BGAL_KLULA : 363- 367: hprfg RAVpL dfvvr BGAL_LACDE : 215- 219: msglf RSVtL qakpr BGAL_LEULA : 329- 333: yqfgf RTVeL rddkv BGAL_STRTR : 210- 214: lygif RDVyL yaipk BGAL_THETU : 149- 153: yggiy REVsL giydd BGLR_ECOLI : 172- 176: yagih RSVmL yttpn BGLR_HUMAN : 103- 107: wvwye REViL perwt BGLR_HUMAN : 216- 220: yaglq RSVlL yttpt BGLR_MOUSE : 215- 219: yaglh RSVvL yttpt BGLR_RAT : 215- 219: yaglh RSVvL yttpt BGLR_RAT : 238- 242: ttdvd RDVgL vnywi R 18: 14.2102 16( 13) W-x(3,4)-N-E-[APST] Occurences: 16(13) BGA2_ECOLI : 444- 450: psiii Wslg-NES gygcn BGAL_CLOAB : 454- 460: psvli Wscg-NES yaged BGAL_ECOLI : 456- 462: psvii Wslg-NES ghgan BGAL_KLEPN : 463- 469: pciii Wslg-NES ggggn BGAL_KLULA : 477- 483: psiii Wslg-NEA cygrn BGAL_LACDE : 459- 465: asili Wslg-NES yagtv BGAL_LEULA : 461- 467: psiif Wslg-NES yaged BGAL_STRTR : 453- 459: asvii Wscg-NES yagkd BGAL_THETU : 383- 390: psiil WgvriNES qddda BGLR_ECOLI : 408- 414: psvvm Wsia-NEP dtrpq BGLR_HUMAN : 446- 452: pavvm Wsva-NEP ashle BGLR_HUMAN : 627- 633: lrery Wkia-NET ryphs BGLR_MOUSE : 442- 448: pavvm Wsva-NEP ssalk BGLR_MOUSE : 623- 629: lrery Wria-NET gghgs BGLR_RAT : 442- 448: pavvm Wsva-NEP vsslk BGLR_RAT : 623- 629: lrery Wria-NET rgygs S 19: 12.5102 13( 13) H-Y-P Occurences: 13(13) BGA2_ECOLI : 376- 378: svrta HYP ndprf BGAL_CLOAB : 381- 383: avrts HYP nqslw BGAL_ECOLI : 391- 393: avrcs HYP nhplw BGAL_KLEPN : 398- 400: avrcs HYP naprw BGAL_KLULA : 389- 391: avrns HYP nhpkv BGAL_LACDE : 385- 387: avrcs HYP nqslf BGAL_LEULA : 388- 390: adrtc HYP dqlpw BGAL_STRTR : 380- 382: avrts HYP nqtrw BGAL_THETU : 326- 328: ivrts HYP qskhf BGLR_ECOLI : 330- 332: syrts HYP yaeem BGLR_HUMAN : 385- 387: afrts HYP yaeev BGLR_MOUSE : 381- 383: sfrts HYP yseev BGLR_RAT : 381- 383: sfrts HYP yseev T 20: 12.0102 19( 13) L-x(2,3)-G-x-N Occurences: 19(13) BGA2_ECOLI : 969- 975: nldhq LlglGsN swgse BGA2_ECOLI : 970- 975: ldhql Lgl-GsN swgse BGAL_CLOAB : 178- 183: ditdy Lre-GeN klave BGAL_ECOLI : 177- 182: dlsaf Lra-GeN rlavm BGAL_ECOLI : 349- 355: lngkp LlirGvN rhehh BGAL_ECOLI : 350- 355: ngkpl Lir-GvN rhehh BGAL_KLEPN : 183- 188: dlspf Lrp-GdN rlcvm BGAL_KLEPN : 356- 362: lngkp LlirGvN rhehh BGAL_KLEPN : 357- 362: ngkpl Lir-GvN rhehh BGAL_KLULA : 348- 353: ngkdi Lfr-GvN rhdhh BGAL_LACDE : 732- 738: dsdyn LglkGnN fqilf BGAL_LACDE : 853- 859: eeagl LpafGlN lalpk BGAL_LEULA : 346- 352: vnnkr LvinGvN rhewn BGAL_STRTR : 177- 182: eisdy Lve-GdN klava BGAL_THETU : 283- 289: lngrk LklrGlN rhqsy BGLR_ECOLI : 561- 566: tsqgi Lrv-GgN kkgif BGLR_HUMAN : 373- 379: kdfnl LrwlGaN afrts BGLR_MOUSE : 369- 375: kdfnl LrwlGaN sfrts BGLR_RAT : 369- 375: kdfnl LrwlGaN sfrts Number of patterns evaluated by Pratt:14663 Total running time: 31 seconds