------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file GLYCOSYL_HYDROL_F25 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GLYCOSYL_HYDROL_F25.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: LYCA_BPMV1 195 LYCH_CHASP 211 LYCM_STRGL 294 LYC_CLOAB 324 NAAA_BPCP1 339 NAAA_BPCP7 342 NAAA_BPCP9 339 Pratt run started at Thu Feb 6 19:36:29 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 19.8503 7( 7) G-x(4,5)-I-x(0,1)-K-x(2)-E-x(3)-Y 2: 16.1802 10( 7) I-x(0,1)-K-x(2)-E-x(3)-Y 3: 15.1802 7( 7) L-D-x(0,1)-E-x(1,3)-S 4: 12.5102 7( 7) A-x(4)-F-x(4)-G 5: 12.5102 9( 7) K-x(2)-E-x(3)-Y 6: 12.0102 7( 7) A-x(2,3)-Y-x(5)-G 7: 12.0102 8( 7) A-x(3)-F-x(2,3)-I 8: 12.0102 11( 7) G-x(2)-N-x(4,5)-S 9: 12.0102 7( 7) G-x(1,2)-T-x-T 10: 12.0102 7( 7) A-x-Y-x(3,4)-G 11: 11.5102 8( 7) G-x(3,4)-G-x(0,1)-L 12: 11.5102 11( 7) A-x(2)-G-x(0,2)-Y 13: 11.5102 12( 7) T-x(0,1)-A-x(3,4)-F 14: 11.5102 9( 7) A-x(3,4)-T-x(1,2)-A 15: 11.5102 7( 7) S-x(3)-L-x(3,5)-A 16: 11.5102 8( 7) G-x-Y-x(2,4)-A 17: 11.5102 7( 7) G-x(1,3)-Y-x(2)-A 18: 11.5102 7( 7) A-G-x(3,5)-G 19: 11.5102 11( 7) A-x(0,2)-G-x(3)-G 20: 11.5102 12( 7) A-x(0,2)-G-x(5)-Y Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 46.4204 7( 7) G-x(4,5)-I-x(0,1)-K-[AILV]-[ST]-E-[GS]-x-[DNST]-Y-x-[DN]-x(4)-[ADS]-x(2)-[DENST]-[AGNQ]-[APS]-x(3)-[GT] B 2: 42.7504 10( 7) I-x(0,1)-K-[AILV]-[ST]-E-[GS]-x-[DNST]-Y-x-[DN]-x(4)-[ADS]-x(2)-[DENST]-[AGNQ]-[APS]-x(3)-[GT] C 3: 39.0803 7( 7) K-[AILV]-[ST]-E-[GS]-x-[DNST]-Y-x-[DN]-x(4)-[ADS]-x(2)-[DENST]-[AGNQ]-[APS]-x(3)-[GT] D 4: 36.4792 7( 7) A-x(2)-[DRS]-F-x(2,3)-I-x-[ADEG]-x-[EGT]-x(2)-[GNPS]-x(3)-[DPST]-x(2)-[PS]-x(3)-[DNQT]-[AGNQ]-[AIV]-x(4)-[GILV] E 5: 26.7667 7( 7) A-[ADNQ]-x(3)-F-x-[AQS]-x(2)-G-x(4)-[DGQS]-x(2)-[GSTV]-x-[GNP]-x(3)-[ADNT] F 6: 26.4466 7( 7) L-D-x(0,1)-E-x(1,3)-S-[AEGN]-[ADGNPS]-x(3)-[GN]-x(2)-[ASTV]-[ACSTV] G 7: 25.0478 7( 7) A-x(2,3)-Y-[FI]-x(3)-[DGTV]-G-x(4)-[DGQS]-x(2)-[GSTV]-x-[GP] H 8: 17.8168 9( 7) G-[ST]-x-N-x(4,5)-S-x-[DGS] I 9: 16.8593 7( 7) A-[ADG]-Y-x(3,4)-G-x-[ADGS] J 10: 15.9282 7( 7) G-x-Y-x(2,4)-A-x(4)-[DNST]-x(2)-[ADET] K 11: 15.9282 7( 7) G-x(1,3)-Y-x(2)-A-x(4)-[DNST]-x(2)-[ADET] L 12: 13.7479 7( 7) S-x(3)-L-x(3,5)-A-x-[DGNV] M 13: 13.7233 12( 7) T-x(0,1)-A-x(3,4)-F-x-[DQRS] N 14: 13.7040 10( 7) A-[DNTV]-x-G-x(0,2)-Y O 15: 12.0102 7( 7) G-x(1,2)-T-x-T P 16: 11.5102 8( 7) G-x(3,4)-G-x(0,1)-L Q 17: 11.5102 9( 7) A-x(3,4)-T-x(1,2)-A R 18: 11.5102 7( 7) A-G-x(3,5)-G S 19: 11.5102 11( 7) A-x(0,2)-G-x(3)-G T 20: 11.5102 12( 7) A-x(0,2)-G-x(5)-Y Best patterns with alignements: fitness hits(seqs) Pattern A 1: 46.4204 7( 7) G-x(4,5)-I-x(0,1)-K-[AILV]-[ST]-E-[GS]-x-[DNST]-Y-x-[DN]-x(4)-[ADS]-x(2)-[DENST]-[AGNQ]-[APS]-x(3)-[GT] Occurences: 7(7) LYCA_BPMV1 : 24- 54: ayhka Gasfa-IvKLTEGvDYvNrrgpSrwTAPgltT stlmp LYCH_CHASP : 23- 53: gaysa GarfviI-KATEGtSYtNpsfsSqyNGAttaT gnyfi LYCH_CHASP : 23- 53: gaysa Garfv-IiKATEGtSYtNpsfsSqyNGAttaT gnyfi LYCM_STRGL : 103- 133: svksa GmsfayI-KATEGtNYkDdrfsAnyTNAynaG iirga LYC_CLOAB : 22- 52: avkes GvevvyI-KATEGlTYtDstykDfyDGAknaG lkigf NAAA_BPCP1 : 27- 57: ileqm GttntiI-KISEStTYlNrclsAqvEQSnpiG fyhfa NAAA_BPCP1 : 27- 57: ileqm Gttnt-IiKISEStTYlNrclsAqvEQSnpiG fyhfa NAAA_BPCP7 : 27- 57: ileea GttntiI-KVSEStSYlNpclsAqvSQSnpiG fyhfa NAAA_BPCP7 : 27- 57: ileea Gttnt-IiKVSEStSYlNpclsAqvSQSnpiG fyhfa NAAA_BPCP9 : 27- 57: ileqm Gttnt-IvKISEStTYlNpclsAqvEQStpiG fyhfa B 2: 42.7504 10( 7) I-x(0,1)-K-[AILV]-[ST]-E-[GS]-x-[DNST]-Y-x-[DN]-x(4)-[ADS]-x(2)-[DENST]-[AGNQ]-[APS]-x(3)-[GT] Occurences: 10(7) LYCA_BPMV1 : 29- 54: gasfa IvKLTEGvDYvNrrgpSrwTAPgltT stlmp LYCH_CHASP : 28- 53: garfv IiKATEGtSYtNpsfsSqyNGAttaT gnyfi LYCH_CHASP : 29- 53: arfvi I-KATEGtSYtNpsfsSqyNGAttaT gnyfi LYCM_STRGL : 109- 133: msfay I-KATEGtNYkDdrfsAnyTNAynaG iirga LYC_CLOAB : 28- 52: vevvy I-KATEGlTYtDstykDfyDGAknaG lkigf NAAA_BPCP1 : 32- 57: gttnt IiKISEStTYlNrclsAqvEQSnpiG fyhfa NAAA_BPCP1 : 33- 57: ttnti I-KISEStTYlNrclsAqvEQSnpiG fyhfa NAAA_BPCP7 : 32- 57: gttnt IiKVSEStSYlNpclsAqvSQSnpiG fyhfa NAAA_BPCP7 : 33- 57: ttnti I-KVSEStSYlNpclsAqvSQSnpiG fyhfa NAAA_BPCP9 : 32- 57: gttnt IvKISEStTYlNpclsAqvEQStpiG fyhfa C 3: 39.0803 7( 7) K-[AILV]-[ST]-E-[GS]-x-[DNST]-Y-x-[DN]-x(4)-[ADS]-x(2)-[DENST]-[AGNQ]-[APS]-x(3)-[GT] Occurences: 7(7) LYCA_BPMV1 : 31- 54: sfaiv KLTEGvDYvNrrgpSrwTAPgltT stlmp LYCH_CHASP : 30- 53: rfvii KATEGtSYtNpsfsSqyNGAttaT gnyfi LYCM_STRGL : 110- 133: sfayi KATEGtNYkDdrfsAnyTNAynaG iirga LYC_CLOAB : 29- 52: evvyi KATEGlTYtDstykDfyDGAknaG lkigf NAAA_BPCP1 : 34- 57: tntii KISEStTYlNrclsAqvEQSnpiG fyhfa NAAA_BPCP7 : 34- 57: tntii KVSEStSYlNpclsAqvSQSnpiG fyhfa NAAA_BPCP9 : 34- 57: tntiv KISEStTYlNpclsAqvEQStpiG fyhfa D 4: 36.4792 7( 7) A-x(2)-[DRS]-F-x(2,3)-I-x-[ADEG]-x-[EGT]-x(2)-[GNPS]-x(3)-[DPST]-x(2)-[PS]-x(3)-[DNQT]-[AGNQ]-[AIV]-x(4)-[GILV] Occurences: 7(7) LYCA_BPMV1 : 116- 149: ssnta AilDFmdaIkAaGwrPglySgaSlmrTAIdtkqV vkkyg LYCH_CHASP : 22- 54: agays AgaRFvi-IkAtEgtSytnPsfSsqyNGAttatG nyfir LYCM_STRGL : 102- 134: ssvks AgmSFay-IkAtEgtNykdDrfSanyTNAynagI irgay LYC_CLOAB : 230- 262: petea AikDFqs-ImGlTvdGiwgTntSgaaQQIfsrpL dgvay NAAA_BPCP1 : 107- 140: qantn AclRFmqmIaDaGykPiyySykPfthDNVdyqqI laqfp NAAA_BPCP7 : 107- 140: qrntt AclRFmqmIaEaGytPiyySykPftlDNVdyqqI laqfp NAAA_BPCP9 : 107- 140: qantn AclRFmqmIaDaGytPiyySykPftlDNVdyqqI laqfp E 5: 26.7667 7( 7) A-[ADNQ]-x(3)-F-x-[AQS]-x(2)-G-x(4)-[DGQS]-x(2)-[GSTV]-x-[GNP]-x(3)-[ADNT] Occurences: 7(7) LYCA_BPMV1 : 171- 195: aavst ADfgyFrQwtGspsgSlpVtGmawT LYCH_CHASP : 74- 98: ettga AQadyFiAhgGgwsgDgiTlPgmlD leseg LYCM_STRGL : 151- 175: assgt AQadyFaSngGgwsrDnrTlPgvlD iehnp LYC_CLOAB : 229- 253: gpete AAikdFqSimGltvdGiwGtNtsgA aqqif NAAA_BPCP1 : 160- 184: lndgt ANfeyFpSmdGirwwQysSnPfdkN ivlld NAAA_BPCP7 : 160- 184: lndgt ANfeyFpSmdGirwwQysSnPfdkN ivlld NAAA_BPCP9 : 160- 184: lndgn ADfeyFpSmdGirwwQysSnPfdkN ivlld F 6: 26.4466 7( 7) L-D-x(0,1)-E-x(1,3)-S-[AEGN]-[ADGNPS]-x(3)-[GN]-x(2)-[ASTV]-[ACSTV] Occurences: 7(7) LYCA_BPMV1 : 96- 112: krmlw LDwEag-SGNvvtGskSS ntaai LYCH_CHASP : 97- 114: tlpgm LDlEsegSNPacwGlsAA smvaw LYCM_STRGL : 174- 191: tlpgv LDiEhnpSGAmcyGlsTT qmrtw LYC_CLOAB : 177- 191: sgsad LD-Ef--SEGilvGgtVV idpgq NAAA_BPCP1 : 91- 108: vkylv LDyEddpSGDaqaNtnAC lrfmq NAAA_BPCP7 : 91- 108: vkylv LDyEdhaSASvqrNttAC lrfmq NAAA_BPCP9 : 91- 108: vkylv LDyEddpSGNaqaNtnAC lrfmq G 7: 25.0478 7( 7) A-x(2,3)-Y-[FI]-x(3)-[DGTV]-G-x(4)-[DGQS]-x(2)-[GSTV]-x-[GP] Occurences: 7(7) LYCA_BPMV1 : 171- 191: aavst AdfgYFrqwTGspsgSlpVtG mawt LYCH_CHASP : 74- 94: ettga AqadYFiahGGgwsgDgiTlP gmldl LYCM_STRGL : 151- 171: assgt AqadYFasnGGgwsrDnrTlP gvldi LYC_CLOAB : 273- 292: phyey Atr-YIqyrVGasvdGtfGsG tkakv NAAA_BPCP1 : 160- 180: lndgt AnfeYFpsmDGirwwQysSnP fdkni NAAA_BPCP7 : 160- 180: lndgt AnfeYFpsmDGirwwQysSnP fdkni NAAA_BPCP9 : 160- 180: lndgn AdfeYFpsmDGirwwQysSnP fdkni H 8: 17.8168 9( 7) G-[ST]-x-N-x(4,5)-S-x-[DGS] Occurences: 9(7) LYCA_BPMV1 : 101- 111: ldwea GSgNvvtg-SkS sntaa LYCH_CHASP : 193- 203: ayayg GSnNfing-SiD nlkkl LYCM_STRGL : 92- 103: vshwq GSiNwssvkSaG msfay LYC_CLOAB : 166- 176: qysds GSvNgisg-SaD ldefs NAAA_BPCP1 : 27- 38: ileqm GTtNtiikiSeS ttyln NAAA_BPCP1 : 158- 169: yglnd GTaNfeyfpSmD girww NAAA_BPCP7 : 27- 38: ileea GTtNtiikvSeS tsyln NAAA_BPCP7 : 158- 169: yglnd GTaNfeyfpSmD girww NAAA_BPCP9 : 27- 38: ileqm GTtNtivkiSeS ttyln I 9: 16.8593 7( 7) A-[ADG]-Y-x(3,4)-G-x-[ADGS] Occurences: 7(7) LYCA_BPMV1 : 18- 26: qpidl AAYhka-GaS faivk LYCH_CHASP : 76- 85: tgaaq ADYfiahGgG wsgdg LYCM_STRGL : 153- 162: sgtaq ADYfasnGgG wsrdn LYC_CLOAB : 109- 118: nvrkf ADYlinkGlD vcvyt NAAA_BPCP1 : 151- 160: nslwi AGYglndGtA nfeyf NAAA_BPCP7 : 151- 160: nslwi AGYglndGtA nfeyf NAAA_BPCP9 : 151- 160: nslwi AGYglndGnA dfeyf J 10: 15.9282 7( 7) G-x-Y-x(2,4)-A-x(4)-[DNST]-x(2)-[ADET] Occurences: 7(7) LYCA_BPMV1 : 132- 145: agwrp GlYsg--AslmrTaiD tkqvv LYCH_CHASP : 60- 73: nyfir GgYhf--AhpgeTtgA aqady LYCM_STRGL : 137- 150: agiir GaYhf--ArpnaSsgT aqady LYC_CLOAB : 56- 71: aglki GfYhylrAndptSeaE hffnt NAAA_BPCP1 : 57- 70: qsnpi GfYhf--ArfggDvaE aerea NAAA_BPCP7 : 57- 70: qsnpi GfYhf--AcfggNeeE aeaea NAAA_BPCP9 : 57- 70: qstpi GfYhf--ArfggDvaE aerea K 11: 15.9282 7( 7) G-x(1,3)-Y-x(2)-A-x(4)-[DNST]-x(2)-[ADET] Occurences: 7(7) LYCA_BPMV1 : 132- 145: agwrp Gl--YsgAslmrTaiD tkqvv LYCH_CHASP : 60- 73: nyfir Gg--YhfAhpgeTtgA aqady LYCM_STRGL : 137- 150: agiir Ga--YhfArpnaSsgT aqady LYC_CLOAB : 56- 71: aglki GfyhYlrAndptSeaE hffnt NAAA_BPCP1 : 57- 70: qsnpi Gf--YhfArfggDvaE aerea NAAA_BPCP7 : 57- 70: qsnpi Gf--YhfAcfggNeeE aeaea NAAA_BPCP9 : 57- 70: qstpi Gf--YhfArfggDvaE aerea L 12: 13.7479 7( 7) S-x(3)-L-x(3,5)-A-x-[DGNV] Occurences: 7(7) LYCA_BPMV1 : 135- 145: rpgly SgasLmrt--AiD tkqvv LYCH_CHASP : 201- 211: nfing SidnLkkl--AtG LYCM_STRGL : 282- 292: nkfng SaarLlal--AnN ta LYC_CLOAB : 78- 89: ffnti SglsLdckc-AiD vevtl NAAA_BPCP1 : 38- 50: ikise SttyLnrclsAqV eqsnp NAAA_BPCP7 : 38- 50: ikvse StsyLnpclsAqV sqsnp NAAA_BPCP9 : 38- 50: vkise SttyLnpclsAqV eqstp M 13: 13.7233 12( 7) T-x(0,1)-A-x(3,4)-F-x-[DQRS] Occurences: 12(7) LYCA_BPMV1 : 114- 122: skssn TaAild-FmD aikaa LYCA_BPMV1 : 114- 122: skssn T-AaildFmD aikaa LYCA_BPMV1 : 170- 178: maavs T-AdfgyFrQ wtgsp LYCH_CHASP : 50- 59: qynga TtAtgnyFiR ggyhf LYCH_CHASP : 51- 59: yngat T-AtgnyFiR ggyhf LYCM_STRGL : 150- 158: nassg T-AqadyFaS ngggw LYC_CLOAB : 227- 236: iegpe TeAaikdFqS imglt NAAA_BPCP1 : 105- 113: daqan TnAclr-FmQ miada NAAA_BPCP1 : 159- 167: glndg T-AnfeyFpS mdgir NAAA_BPCP7 : 105- 113: svqrn TtAclr-FmQ miaea NAAA_BPCP7 : 106- 113: vqrnt T-Aclr-FmQ miaea NAAA_BPCP7 : 159- 167: glndg T-AnfeyFpS mdgir NAAA_BPCP9 : 105- 113: naqan TnAclr-FmQ miada N 14: 13.7040 10( 7) A-[DNTV]-x-G-x(0,2)-Y Occurences: 10(7) LYCA_BPMV1 : 171- 175: aavst ADfG--Y frqwt LYCH_CHASP : 31- 37: fviik ATeGtsY tnpsf LYCH_CHASP : 129- 134: sdryh AVtGr-Y pmlyt LYCM_STRGL : 111- 117: fayik ATeGtnY kddrf LYC_CLOAB : 30- 36: vvyik ATeGltY tdsty NAAA_BPCP1 : 116- 120: fmqmi ADaG--Y kpiyy NAAA_BPCP7 : 228- 232: rydsl ANrG--Y dpqav NAAA_BPCP7 : 276- 280: rydsl ANrG--Y dpqav NAAA_BPCP7 : 324- 328: rydsl ANrG--Y dpqav NAAA_BPCP9 : 116- 120: fmqmi ADaG--Y tpiyy O 15: 12.0102 7( 7) G-x(1,2)-T-x-T Occurences: 7(7) LYCA_BPMV1 : 51- 56: rwtap GltTsT lmpti LYCH_CHASP : 48- 53: ssqyn GatTaT gnyfi LYCM_STRGL : 252- 257: ptvps GfpTwT fwqys LYC_CLOAB : 33- 37: ikate Gl-TyT dstyk NAAA_BPCP1 : 27- 31: ileqm Gt-TnT iikis NAAA_BPCP7 : 27- 31: ileea Gt-TnT iikvs NAAA_BPCP9 : 27- 31: ileqm Gt-TnT ivkis P 16: 11.5102 8( 7) G-x(3,4)-G-x(0,1)-L Occurences: 8(7) LYCA_BPMV1 : 128- 133: aikaa Gwrp-G-L ysgas LYCA_BPMV1 : 181- 187: frqwt Gsps-GsL pvtgm LYCH_CHASP : 90- 97: gwsgd GitlpGmL dlese LYCM_STRGL : 182- 188: ehnps GamcyG-L sttqm LYC_CLOAB : 47- 53: kdfyd GaknaG-L kigfy NAAA_BPCP1 : 16- 23: vsshn GyditGiL eqmgt NAAA_BPCP7 : 16- 23: vashq GydisGiL eeagt NAAA_BPCP9 : 16- 23: vsshn GyditGiL eqmgt Q 17: 11.5102 9( 7) A-x(3,4)-T-x(1,2)-A Occurences: 9(7) LYCA_BPMV1 : 160- 166: tclwv Asyp-Tm-A avsta LYCA_BPMV1 : 160- 167: tclwv Asyp-TmaA vstad LYCH_CHASP : 65- 73: ggyhf AhpgeTtgA aqady LYCM_STRGL : 25- 32: gglvs AslalTl-A ptaaa LYCM_STRGL : 146- 153: farpn Assg-TaqA dyfas LYC_CLOAB : 63- 70: yhylr Andp-TseA ehffn NAAA_BPCP1 : 101- 107: dpsgd Aqan-Tn-A clrfm NAAA_BPCP7 : 251- 257: narei Adlt-Tv-A neviq NAAA_BPCP7 : 299- 305: narei Adlt-Tv-A neviq NAAA_BPCP9 : 101- 107: dpsgn Aqan-Tn-A clrfm R 18: 11.5102 7( 7) A-G-x(3,5)-G Occurences: 7(7) LYCA_BPMV1 : 127- 132: daika AGwrp--G lysga LYCH_CHASP : 17- 23: psvnf AGaysa-G arfvi LYCM_STRGL : 132- 137: tnayn AGiir--G ayhfa LYC_CLOAB : 51- 56: dgakn AGlki--G fyhyl NAAA_BPCP1 : 151- 158: nslwi AGyglndG tanfe NAAA_BPCP7 : 151- 158: nslwi AGyglndG tanfe NAAA_BPCP9 : 151- 158: nslwi AGyglndG nadfe S 19: 11.5102 11( 7) A-x(0,2)-G-x(3)-G Occurences: 11(7) LYCA_BPMV1 : 126- 132: mdaik Aa-GwrpG lysga LYCA_BPMV1 : 127- 132: daika A--GwrpG lysga LYCH_CHASP : 65- 72: ggyhf AhpGettG aaqad LYCH_CHASP : 81- 88: adyfi AhgGgwsG dgitl LYCH_CHASP : 169- 175: nryas Ap-GtipG gwpyq LYCM_STRGL : 132- 137: tnayn A--GiirG ayhfa LYCM_STRGL : 263- 269: fwqys At-GrvgG vsgdv LYC_CLOAB : 51- 56: dgakn A--GlkiG fyhyl NAAA_BPCP1 : 151- 158: nslwi AgyGlndG tanfe NAAA_BPCP7 : 151- 158: nslwi AgyGlndG tanfe NAAA_BPCP9 : 151- 158: nslwi AgyGlndG nadfe T 20: 11.5102 12( 7) A-x(0,2)-G-x(5)-Y Occurences: 12(7) LYCA_BPMV1 : 126- 134: mdaik Aa-GwrpglY sgasl LYCA_BPMV1 : 127- 134: daika A--GwrpglY sgasl LYCH_CHASP : 129- 138: sdryh AvtGrypmlY tnpsw LYCM_STRGL : 132- 139: tnayn A--GiirgaY hfarp LYCM_STRGL : 146- 155: farpn AssGtaqadY fasng LYC_CLOAB : 51- 58: dgakn A--GlkigfY hylra NAAA_BPCP1 : 116- 125: fmqmi AdaGykpiyY sykpf NAAA_BPCP1 : 118- 125: qmiad A--GykpiyY sykpf NAAA_BPCP7 : 116- 125: fmqmi AeaGytpiyY sykpf NAAA_BPCP7 : 118- 125: qmiae A--GytpiyY sykpf NAAA_BPCP9 : 116- 125: fmqmi AdaGytpiyY sykpf NAAA_BPCP9 : 118- 125: qmiad A--GytpiyY sykpf Number of patterns evaluated by Pratt:2145 Total running time: 1 seconds