------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 13 sequences from file GLYCOSYL_HYDROL_F16 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 13 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GLYCOSYL_HYDROL_F16.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: AGAR_STRCO 309 CGKA_ALTCA 397 E13B_BACCI 682 GUB_BACAM 239 GUB_BACBR 259 GUB_BACLI 243 GUB_BACMA 237 GUB_BACPO 238 GUB_BACSU 242 GUB_CLOTM 334 GUB_FIBSU 349 GUB_RHOMR 286 LAMI_CLOTM 242 Pratt run started at Thu Feb 6 19:36:09 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.0102 15( 13) D-x(1,2)-E-x(2)-G 2: 12.0102 13( 13) E-I-x(0,1)-D 3: 12.0102 13( 13) E-x-D-x(1,2)-E 4: 11.5102 15( 13) G-x(1,2)-P-x(2,3)-E 5: 11.5102 15( 13) N-x(3)-G-x(1,3)-G 6: 11.5102 15( 13) Y-x(1,2)-D-x(0,1)-G 7: 11.5102 20( 13) S-x(2,3)-F-x(1,2)-Y 8: 11.5102 30( 13) S-x(1,2)-F-x(1,2)-Y 9: 11.5102 17( 13) G-K-x(1,3)-T 10: 11.5102 19( 13) G-x(2,3)-S-x(1,2)-T 11: 11.0102 19( 13) G-x(3,5)-G-x(2,3)-P 12: 11.0102 23( 13) D-x(4,5)-Y-x(0,2)-G 13: 11.0102 15( 13) V-x(3,4)-L-x(0,2)-Y 14: 11.0102 19( 13) N-x(2,3)-G-x(0,2)-V 15: 11.0102 15( 13) W-x(1,3)-G-x(2,3)-V 16: 11.0102 14( 13) N-x(0,2)-L-x(1,2)-G 17: 11.0102 22( 13) W-x(2,4)-D-x(0,1)-G 18: 11.0102 20( 13) D-x(3,4)-G-x(2,4)-T 19: 11.0102 24( 13) G-x(1,2)-G-x(0,2)-E 20: 11.0102 19( 13) N-x(1,2)-V-x(1,3)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 20.7219 13( 13) E-[IV]-D-x(1,2)-E-x(2)-[GQ]-x(2)-[APST] B 2: 15.6522 13( 13) S-x(2,3)-F-x(1,2)-Y-[AGQST]-[AGNT] C 3: 15.6522 22( 13) S-x(1,2)-F-x(1,2)-Y-[AGQST]-[AGNT] D 4: 14.6787 13( 13) E-I-x(0,1)-D-[GIV] E 5: 14.1970 15( 13) D-x(1,2)-E-x(2)-G-x(2)-[DPST] F 6: 13.4392 14( 13) N-x(3)-G-x(1,3)-G-x-[DGNQS] G 7: 11.5102 15( 13) G-x(1,2)-P-x(2,3)-E H 8: 11.5102 15( 13) Y-x(1,2)-D-x(0,1)-G I 9: 11.5102 17( 13) G-K-x(1,3)-T J 10: 11.5102 19( 13) G-x(2,3)-S-x(1,2)-T K 11: 11.0102 19( 13) G-x(3,5)-G-x(2,3)-P L 12: 11.0102 23( 13) D-x(4,5)-Y-x(0,2)-G M 13: 11.0102 15( 13) V-x(3,4)-L-x(0,2)-Y N 14: 11.0102 19( 13) N-x(2,3)-G-x(0,2)-V O 15: 11.0102 15( 13) W-x(1,3)-G-x(2,3)-V P 16: 11.0102 14( 13) N-x(0,2)-L-x(1,2)-G Q 17: 11.0102 22( 13) W-x(2,4)-D-x(0,1)-G R 18: 11.0102 20( 13) D-x(3,4)-G-x(2,4)-T S 19: 11.0102 24( 13) G-x(1,2)-G-x(0,2)-E T 20: 11.0102 19( 13) N-x(1,2)-V-x(1,3)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 20.7219 13( 13) E-[IV]-D-x(1,2)-E-x(2)-[GQ]-x(2)-[APST] Occurences: 13(13) AGAR_STRCO : 155- 166: rddvn EIDviEcyGneS lhgkh CGKA_ALTCA : 163- 174: dvqys EIDvvEltQksA vresd E13B_BACCI : 552- 563: waasg EIDvmEarGrlP gsvsg GUB_BACAM : 130- 140: gtpwd EIDi-EflGkdT tkvqf GUB_BACBR : 142- 152: gdpwd EIDi-EflGkdT triqf GUB_BACLI : 134- 144: gtpwd EIDi-EflGkdT tkvqf GUB_BACMA : 128- 138: gtqwd EIDi-EflGkdT tkvqf GUB_BACPO : 129- 139: gtqwd EIDi-EflGkdT tkvqf GUB_BACSU : 133- 143: gtpwd EIDi-EflGkdT tkvqf GUB_CLOTM : 136- 146: nnpwd EIDi-EflGkdT tkvqf GUB_FIBSU : 79- 89: grpwv EVDi-EvlGknP gsfqs GUB_RHOMR : 158- 169: wpdng EIDimEhvGfnP dvvhg LAMI_CLOTM : 134- 144: nnpwd EIDi-EflGkdT tkvqf B 2: 15.6522 13( 13) S-x(2,3)-F-x(1,2)-Y-[AGQST]-[AGNT] Occurences: 13(13) AGAR_STRCO : 57- 64: llpsh Sdd-Fn-YTG kpqtf CGKA_ALTCA : 140- 148: tfpgv Spa-FwmYST idrsl E13B_BACCI : 329- 337: dlsns SqskFa-YSA ngynn GUB_BACAM : 114- 121: ntgiv Ssf-Ft-YTG ptegt GUB_BACBR : 124- 131: vegtv Ssf-Ft-YTG ewdwd GUB_BACLI : 118- 125: nvgiv Ssf-Ft-YTG ptdgt GUB_BACMA : 112- 119: ntgiv Ssf-Ft-YTG pahgt GUB_BACPO : 113- 120: ntgiv Ssf-Ft-YTG pshgt GUB_BACSU : 117- 124: ntgiv Ssf-Ft-YTG ptdgt GUB_CLOTM : 120- 127: nvgiv Ssf-Ft-YTG psdnn GUB_FIBSU : 60- 67: asgtv Ssm-Fl-YQN gseia GUB_RHOMR : 45- 52: welvw Sde-Fd-YSG lpdpe LAMI_CLOTM : 118- 125: nvgiv Ssf-Ft-YTG psdnn C 3: 15.6522 22( 13) S-x(1,2)-F-x(1,2)-Y-[AGQST]-[AGNT] Occurences: 22(13) AGAR_STRCO : 57- 64: llpsh SddFn-YTG kpqtf CGKA_ALTCA : 140- 148: tfpgv SpaFwmYST idrsl E13B_BACCI : 331- 337: snssq Sk-Fa-YSA ngynn GUB_BACAM : 114- 121: ntgiv SsfFt-YTG ptegt GUB_BACAM : 114- 121: ntgiv Ss-FftYTG ptegt GUB_BACAM : 115- 121: tgivs Sf-Ft-YTG ptegt GUB_BACBR : 124- 131: vegtv SsfFt-YTG ewdwd GUB_BACBR : 124- 131: vegtv Ss-FftYTG ewdwd GUB_BACBR : 125- 131: egtvs Sf-Ft-YTG ewdwd GUB_BACLI : 118- 125: nvgiv SsfFt-YTG ptdgt GUB_BACLI : 118- 125: nvgiv Ss-FftYTG ptdgt GUB_BACLI : 119- 125: vgivs Sf-Ft-YTG ptdgt GUB_BACMA : 112- 119: ntgiv SsfFt-YTG pahgt GUB_BACMA : 112- 119: ntgiv Ss-FftYTG pahgt GUB_BACMA : 113- 119: tgivs Sf-Ft-YTG pahgt GUB_BACPO : 113- 120: ntgiv SsfFt-YTG pshgt GUB_BACPO : 113- 120: ntgiv Ss-FftYTG pshgt GUB_BACPO : 114- 120: tgivs Sf-Ft-YTG pshgt GUB_BACSU : 117- 124: ntgiv SsfFt-YTG ptdgt GUB_BACSU : 117- 124: ntgiv Ss-FftYTG ptdgt GUB_BACSU : 118- 124: tgivs Sf-Ft-YTG ptdgt GUB_CLOTM : 120- 127: nvgiv SsfFt-YTG psdnn GUB_CLOTM : 120- 127: nvgiv Ss-FftYTG psdnn GUB_CLOTM : 121- 127: vgivs Sf-Ft-YTG psdnn GUB_FIBSU : 60- 67: asgtv SsmFl-YQN gseia GUB_FIBSU : 61- 67: sgtvs Sm-Fl-YQN gseia GUB_RHOMR : 45- 52: welvw SdeFd-YSG lpdpe LAMI_CLOTM : 118- 125: nvgiv SsfFt-YTG psdnn LAMI_CLOTM : 118- 125: nvgiv Ss-FftYTG psdnn LAMI_CLOTM : 119- 125: vgivs Sf-Ft-YTG psdnn D 4: 14.6787 13( 13) E-I-x(0,1)-D-[GIV] Occurences: 13(13) AGAR_STRCO : 155- 158: rddvn EI-DV iecyg CGKA_ALTCA : 163- 166: dvqys EI-DV veltq E13B_BACCI : 552- 555: waasg EI-DV mearg GUB_BACAM : 130- 133: gtpwd EI-DI eflgk GUB_BACBR : 142- 145: gdpwd EI-DI eflgk GUB_BACLI : 134- 137: gtpwd EI-DI eflgk GUB_BACMA : 128- 131: gtqwd EI-DI eflgk GUB_BACPO : 129- 132: gtqwd EI-DI eflgk GUB_BACSU : 133- 136: gtpwd EI-DI eflgk GUB_CLOTM : 136- 139: nnpwd EI-DI eflgk GUB_FIBSU : 70- 74: yqngs EIaDG rpwve GUB_RHOMR : 158- 161: wpdng EI-DI mehvg LAMI_CLOTM : 134- 137: nnpwd EI-DI eflgk E 5: 14.1970 15( 13) D-x(1,2)-E-x(2)-G-x(2)-[DPST] Occurences: 15(13) AGAR_STRCO : 157- 166: dvnei DviEcyGneS lhgkh CGKA_ALTCA : 235- 243: itwyv Dg-EivGekD nlywh E13B_BACCI : 554- 563: asgei DvmEarGrlP gsvsg GUB_BACAM : 132- 140: pwdei Di-EflGkdT tkvqf GUB_BACBR : 144- 152: pwdei Di-EflGkdT triqf GUB_BACLI : 136- 144: pwdei Di-EflGkdT tkvqf GUB_BACMA : 130- 138: qwdei Di-EflGkdT tkvqf GUB_BACPO : 131- 139: qwdei Di-EflGkdT tkvqf GUB_BACSU : 135- 143: pwdei Di-EflGkdT tkvqf GUB_CLOTM : 81- 89: miltl Dr-EygGsyP yksge GUB_CLOTM : 138- 146: pwdei Di-EflGkdT tkvqf GUB_FIBSU : 81- 89: pwvev Di-EvlGknP gsfqs GUB_RHOMR : 160- 169: dngei DimEhvGfnP dvvhg LAMI_CLOTM : 79- 87: miltl Dr-EygGsyP yksge LAMI_CLOTM : 136- 144: pwdei Di-EflGkdT tkvqf F 6: 13.4392 14( 13) N-x(3)-G-x(1,3)-G-x-[DGNQS] Occurences: 14(13) AGAR_STRCO : 203- 213: gsygy NgetGqvfGdG agqpl CGKA_ALTCA : 301- 309: kvgnn NsapGe--GqS cpntf E13B_BACCI : 377- 387: igypl NgqaGgniGnN fvnyt GUB_BACAM : 207- 215: gkimm NlwnGt--GvD dwlgs GUB_BACBR : 219- 227: qkimm NlwpGv--GvD gwtgv GUB_BACLI : 211- 219: gkimm NlwnGa--GvD ewlgs GUB_BACMA : 205- 213: gkimm NlwnGt--GvD dwlgs GUB_BACPO : 206- 214: gkimm NlwnGt--GvD swlgs GUB_BACSU : 210- 218: gkimm NlwnGt--GvD ewlgs GUB_CLOTM : 213- 221: gkimm NlwpGi--GvD ewlgr GUB_FIBSU : 95- 104: gsfqs NiitGka-GaQ ktsek GUB_RHOMR : 182- 192: htkay NhllGtqrGgS irvpt GUB_RHOMR : 252- 262: fhlim NiavGgawGgQ qgvdp LAMI_CLOTM : 211- 219: gkimm NlwpGi--GvD ewlgr G 7: 11.5102 15( 13) G-x(1,2)-P-x(2,3)-E Occurences: 15(13) AGAR_STRCO : 282- 289: wrvdr GiePtdaE ladps CGKA_ALTCA : 281- 287: nksae Gf-PtsmE vdyvr E13B_BACCI : 301- 308: lpkid GgaPiakE lgnfv E13B_BACCI : 302- 308: pkidg Ga-PiakE lgnfv GUB_BACAM : 125- 130: tgpte Gt-Pwd-E idief GUB_BACBR : 137- 142: ewdwd Gd-Pwd-E idief GUB_BACLI : 129- 134: tgptd Gt-Pwd-E idief GUB_BACMA : 221- 228: lgsyn GanPlyaE ydwvk GUB_BACPO : 222- 229: lgsyn GanPlyaE ydwvk GUB_BACSU : 128- 133: tgptd Gt-Pwd-E idief GUB_CLOTM : 229- 236: lgryd GrtPlqaE yeyvk GUB_FIBSU : 74- 79: seiad Gr-Pwv-E vdiev GUB_FIBSU : 261- 268: qesfn GqvPrddE papqs GUB_RHOMR : 52- 57: efdys Gl-Pdp-E kwdyd LAMI_CLOTM : 227- 234: lgryd GrtPlqaE ygick H 8: 11.5102 15( 13) Y-x(1,2)-D-x(0,1)-G Occurences: 15(13) AGAR_STRCO : 194- 198: rsqkg YfaD-G sygyn CGKA_ALTCA : 233- 236: dkitw Yv-D-G eivge E13B_BACCI : 85- 89: twndv Ys-DvG vnvkv E13B_BACCI : 474- 478: stqnv YvqD-G klnik E13B_BACCI : 613- 616: dnikw Yv-D-G kffyk GUB_BACAM : 184- 187: nsikw Yv-D-G qlkht GUB_BACBR : 170- 174: ggnef Yy-DlG fdase GUB_BACLI : 188- 191: nsikw Yv-D-G qlkht GUB_BACMA : 182- 185: gyikw Yv-D-G vlkht GUB_BACPO : 183- 186: gyikw Yv-D-G vlkht GUB_BACSU : 187- 190: nsikw Yv-D-G qlkht GUB_CLOTM : 190- 193: dyidf Yv-D-G kkvyr GUB_FIBSU : 241- 245: tdkni YsrD-G mlila GUB_RHOMR : 152- 157: tygsa YwpDnG eidim LAMI_CLOTM : 188- 191: dyidf Yv-D-G kkvyr I 9: 11.5102 17( 13) G-K-x(1,3)-T Occurences: 17(13) AGAR_STRCO : 64- 68: dfnyt GKpq-T frgrw AGAR_STRCO : 169- 174: neslh GKhmnT ayhif CGKA_ALTCA : 79- 84: atvsn GKlklT tkres CGKA_ALTCA : 190- 193: ivvkn GKp--T wmrpg E13B_BACCI : 504- 508: aqyss GKin-T kdkls GUB_BACAM : 137- 140: diefl GKd--T tkvqf GUB_BACAM : 137- 141: diefl GKdt-T kvqfn GUB_BACBR : 149- 152: diefl GKd--T triqf GUB_BACBR : 149- 153: diefl GKdt-T riqfn GUB_BACLI : 141- 144: diefl GKd--T tkvqf GUB_BACLI : 141- 145: diefl GKdt-T kvqfn GUB_BACMA : 135- 138: diefl GKd--T tkvqf GUB_BACMA : 135- 139: diefl GKdt-T kvqfn GUB_BACPO : 136- 139: diefl GKd--T tkvqf GUB_BACPO : 136- 140: diefl GKdt-T kvqfn GUB_BACSU : 140- 143: diefl GKd--T tkvqf GUB_BACSU : 140- 144: diefl GKdt-T kvqfn GUB_CLOTM : 74- 79: vtfsn GKmilT ldrey GUB_CLOTM : 143- 146: diefl GKd--T tkvqf GUB_CLOTM : 143- 147: diefl GKdt-T kvqfn GUB_FIBSU : 222- 227: dgsrw GKgdwT fdgnr GUB_RHOMR : 114- 119: rlvtr GKaswT ygrfe LAMI_CLOTM : 72- 77: gdisn GKmilT ldrey LAMI_CLOTM : 141- 144: diefl GKd--T tkvqf LAMI_CLOTM : 141- 145: diefl GKdt-T kvqfn J 10: 11.5102 19( 13) G-x(2,3)-S-x(1,2)-T Occurences: 19(13) AGAR_STRCO : 116- 122: grvyc GyvtSr-T pveyp CGKA_ALTCA : 113- 120: lyyts GvakSraT gnygy E13B_BACCI : 564- 569: rgrlp Gsv-Sg-T ihfgg GUB_BACAM : 87- 94: nkfdc GenrSvqT ygygl GUB_BACAM : 111- 118: paknt GivsSffT ytgpt GUB_BACBR : 121- 128: pakve GtvsSffT ytgew GUB_BACLI : 15- 22: mllvt GlflSlsT faasa GUB_BACLI : 91- 98: nkfdc GenrSvqT ygygl GUB_BACLI : 115- 122: paknv GivsSffT ytgpt GUB_BACMA : 109- 116: paknt GivsSffT ytgpa GUB_BACPO : 110- 117: paknt GivsSffT ytgps GUB_BACSU : 90- 97: nkfdc GenrSvqT ygygl GUB_BACSU : 114- 121: paknt GivsSffT ytgpt GUB_CLOTM : 117- 124: aaknv GivsSffT ytgps GUB_FIBSU : 147- 154: vrkte GgqvSnlT gtqgl GUB_FIBSU : 148- 154: rkteg Gqv-SnlT gtqgl GUB_FIBSU : 199- 206: ytpgq GeggSdfT ldwtd GUB_RHOMR : 114- 119: rlvtr Gka-Sw-T ygrfe LAMI_CLOTM : 115- 122: aaknv GivsSffT ytgps K 11: 11.0102 19( 13) G-x(3,5)-G-x(2,3)-P Occurences: 19(13) AGAR_STRCO : 16- 24: saval Gaga--GlagP apaah AGAR_STRCO : 18- 26: valga Gagla-Gpa-P aahaa AGAR_STRCO : 99- 109: swvad GnliveGrraP dgrvy AGAR_STRCO : 207- 217: ynget GqvfgdGagqP llrng CGKA_ALTCA : 132- 141: earik GastfpGvs-P afwmy E13B_BACCI : 63- 72: sksgv Gkasy-GfvmP kfngg E13B_BACCI : 568- 577: pgsvs GtihfgGqw-P vnqss E13B_BACCI : 568- 577: pgsvs Gtihf-GgqwP vnqss E13B_BACCI : 653- 662: mnlav GgnfdgGrt-P nasdi E13B_BACCI : 653- 662: mnlav Ggnfd-GgrtP nasdi E13B_BACCI : 654- 662: nlavg Gnfdg-Grt-P nasdi E13B_BACCI : 654- 662: nlavg Gnfd--GgrtP nasdi GUB_BACAM : 219- 226: vddwl Gsyn--Gvn-P iyahy GUB_BACBR : 231- 239: vdgwt Gvfd--GdntP vysyy GUB_BACLI : 223- 230: vdewl Gsyn--Gvt-P lsrsl GUB_BACMA : 217- 224: vddwl Gsyn--Gan-P lyaey GUB_BACPO : 218- 225: vdswl Gsyn--Gan-P lyaey GUB_BACSU : 222- 229: vdewl Gsyn--Gvn-P lyahy GUB_CLOTM : 225- 232: vdewl Gryd--Grt-P lqaey GUB_FIBSU : 255- 264: altrk GqesfnGqv-P rddep GUB_RHOMR : 260- 267: vggaw Ggqq--Gvd-P eafpa LAMI_CLOTM : 223- 230: vdewl Gryd--Grt-P lqaey L 12: 11.0102 23( 13) D-x(4,5)-Y-x(0,2)-G Occurences: 23(13) AGAR_STRCO : 157- 163: dvnei Dviec-Y--G neslh AGAR_STRCO : 197- 204: kgyfa Dgsyg-Yn-G etgqv CGKA_ALTCA : 228- 236: vnvtk Dkitw-YvdG eivge E13B_BACCI : 437- 446: ngttl DtskwnYetG yylnn E13B_BACCI : 510- 517: kintk DklslkY--G rvdfr E13B_BACCI : 608- 616: vvwee Dnikw-YvdG kffyk GUB_BACAM : 215- 223: ngtgv DdwlgsYn-G vnpiy GUB_BACAM : 216- 223: gtgvd Dwlgs-Yn-G vnpiy GUB_BACBR : 191- 199: fewre Dsitw-YvnG eavht GUB_BACLI : 219- 227: ngagv DewlgsYn-G vtpls GUB_BACMA : 213- 221: ngtgv DdwlgsYn-G anply GUB_BACMA : 214- 221: gtgvd Dwlgs-Yn-G anply GUB_BACPO : 214- 222: ngtgv DswlgsYn-G anply GUB_BACSU : 36- 44: ggsff Dpfng-YnsG fwqka GUB_BACSU : 218- 226: ngtgv DewlgsYn-G vnply GUB_CLOTM : 185- 193: fewrp Dyidf-YvdG kkvyr GUB_CLOTM : 192- 199: idfyv Dgkkv-Yr-G trnip GUB_CLOTM : 221- 229: pgigv DewlgrYd-G rtplq GUB_FIBSU : 118- 125: vspaa DqafhtY--G lewtp GUB_RHOMR : 55- 64: ysglp DpekwdYdvG ghgwg LAMI_CLOTM : 183- 191: fewrp Dyidf-YvdG kkvyr LAMI_CLOTM : 190- 197: idfyv Dgkkv-Yr-G trnip LAMI_CLOTM : 219- 227: pgigv DewlgrYd-G rtplq M 13: 11.0102 15( 13) V-x(3,4)-L-x(0,2)-Y Occurences: 15(13) AGAR_STRCO : 124- 129: tsrtp Veyp-L--Y tevlm CGKA_ALTCA : 103- 109: cnqqq VanypL--Y ytsgv CGKA_ALTCA : 103- 110: cnqqq VanypLy-Y tsgva E13B_BACCI : 196- 203: vtyea Vadd-LkvY vkpvn GUB_BACAM : 214- 221: wngtg Vddw-LgsY ngvnp GUB_BACBR : 247- 255: syydw VrytpLqnY qihq GUB_BACLI : 218- 225: wngag Vdew-LgsY ngvtp GUB_BACMA : 28- 35: alags VfwepLs-Y fnrst GUB_BACMA : 212- 219: wngtg Vddw-LgsY nganp GUB_BACPO : 29- 36: afagn VfwepLs-Y fnsst GUB_BACPO : 213- 220: wngtg Vdsw-LgsY nganp GUB_BACSU : 217- 224: wngtg Vdew-LgsY ngvnp GUB_CLOTM : 220- 227: wpgig Vdew-LgrY dgrtp GUB_FIBSU : 59- 65: aasgt VssmfL--Y qngse GUB_RHOMR : 218- 223: eirwf Vdds-L--Y yrfpn GUB_RHOMR : 218- 224: eirwf Vdds-Ly-Y rfpne LAMI_CLOTM : 218- 225: wpgig Vdew-LgrY dgrtp N 14: 11.0102 19( 13) N-x(2,3)-G-x(0,2)-V Occurences: 19(13) AGAR_STRCO : 203- 209: gsygy NgetGq-V fgdga CGKA_ALTCA : 364- 368: nvatv Nsa-G--V vkakn CGKA_ALTCA : 364- 369: nvatv Nsa-Gv-V kaknk E13B_BACCI : 317- 323: fvyqi Nin-GqwV dlsns GUB_BACAM : 207- 214: gkimm NlwnGtgV ddwlg GUB_BACAM : 210- 214: mmnlw Ngt-G--V ddwlg GUB_BACBR : 219- 224: qkimm NlwpG--V gvdgw GUB_BACBR : 219- 226: qkimm NlwpGvgV dgwtg GUB_BACLI : 211- 218: gkimm NlwnGagV dewlg GUB_BACLI : 214- 218: mmnlw Nga-G--V dewlg GUB_BACMA : 205- 212: gkimm NlwnGtgV ddwlg GUB_BACMA : 208- 212: mmnlw Ngt-G--V ddwlg GUB_BACPO : 206- 213: gkimm NlwnGtgV dswlg GUB_BACPO : 209- 213: mmnlw Ngt-G--V dswlg GUB_BACSU : 210- 217: gkimm NlwnGtgV dewlg GUB_BACSU : 213- 217: mmnlw Ngt-G--V dewlg GUB_CLOTM : 213- 220: gkimm NlwpGigV dewlg GUB_CLOTM : 275- 280: lkgdv Ngd-Gh-V nssdy GUB_FIBSU : 329- 335: hrnlv Nak-GakV npngh GUB_RHOMR : 83- 90: rarie NarvGggV liiea LAMI_CLOTM : 211- 218: gkimm NlwpGigV dewlg O 15: 11.0102 15( 13) W-x(1,3)-G-x(2,3)-V Occurences: 15(13) AGAR_STRCO : 95- 103: sarhs WvadGnliV egrra CGKA_ALTCA : 232- 239: kdkit WyvdGei-V gekdn E13B_BACCI : 547- 555: svygt WaasGeidV mearg GUB_BACAM : 209- 214: immnl Wn--Gtg-V ddwlg GUB_BACBR : 195- 202: edsit WyvnGea-V htate GUB_BACBR : 221- 226: immnl Wp--Gvg-V dgwtg GUB_BACLI : 213- 218: immnl Wn--Gag-V dewlg GUB_BACMA : 207- 212: immnl Wn--Gtg-V ddwlg GUB_BACPO : 208- 213: immnl Wn--Gtg-V dswlg GUB_BACSU : 212- 217: immnl Wn--Gtg-V dewlg GUB_CLOTM : 215- 220: immnl Wp--Gig-V dewlg GUB_FIBSU : 135- 142: pnyvr WtvdGqe-V rkteg GUB_FIBSU : 226- 233: wgkgd WtfdGnr-V dltdk GUB_RHOMR : 259- 265: avgga Wg--GqqgV dpeaf LAMI_CLOTM : 213- 218: immnl Wp--Gig-V dewlg P 16: 11.0102 14( 13) N-x(0,2)-L-x(1,2)-G Occurences: 14(13) AGAR_STRCO : 164- 169: iecyg NesLh-G khmnt CGKA_ALTCA : 252- 258: whrqm NltLsqG lraph E13B_BACCI : 649- 653: fylim N--LavG gnfdg GUB_BACAM : 207- 211: gkimm N--LwnG tgvdd GUB_BACBR : 219- 223: qkimm N--LwpG vgvdg GUB_BACLI : 211- 215: gkimm N--LwnG agvde GUB_BACMA : 205- 209: gkimm N--LwnG tgvdd GUB_BACPO : 206- 210: gkimm N--LwnG tgvds GUB_BACSU : 210- 214: gkimm N--LwnG tgvde GUB_CLOTM : 213- 217: gkimm N--LwpG igvde GUB_CLOTM : 267- 272: tptnp NlpLk-G dvngd GUB_FIBSU : 152- 155: ggqvs N--Lt-G tqglr GUB_RHOMR : 182- 186: htkay Nh-Ll-G tqrgg LAMI_CLOTM : 211- 215: gkimm N--LwpG igvde Q 17: 11.0102 22( 13) W-x(2,4)-D-x(0,1)-G Occurences: 22(13) AGAR_STRCO : 95- 99: sarhs Wva--D-G nlive AGAR_STRCO : 277- 282: teshq Wrv--DrG ieptd CGKA_ALTCA : 232- 236: kdkit Wyv--D-G eivge E13B_BACCI : 113- 119: iynqn WghwsD-G gfngy E13B_BACCI : 113- 120: iynqn WghwsDgG fngyw E13B_BACCI : 612- 616: ednik Wyv--D-G kffyk GUB_BACAM : 43- 48: ynsgl Wqka-D-G ysngd GUB_BACAM : 183- 187: pnsik Wyv--D-G qlkht GUB_BACBR : 133- 137: tytge Wdw--D-G dpwde GUB_BACBR : 229- 235: vgvdg WtgvfD-G dntpv GUB_BACLI : 47- 52: yntgl Wqka-D-G ysngn GUB_BACLI : 187- 191: pnsik Wyv--D-G qlkht GUB_BACMA : 41- 46: fnrst Weka-D-G ysngg GUB_BACMA : 181- 185: pgyik Wyv--D-G vlkht GUB_BACPO : 42- 47: fnsst Wqka-D-G ysngq GUB_BACPO : 182- 186: pgyik Wyv--D-G vlkht GUB_BACSU : 46- 51: ynsgf Wqka-D-G ysngn GUB_BACSU : 186- 190: pnsik Wyv--D-G qlkht GUB_CLOTM : 223- 229: igvde WlgryD-G rtplq GUB_FIBSU : 135- 139: pnyvr Wtv--D-G qevrk GUB_FIBSU : 226- 230: wgkgd Wtf--D-G nrvdl GUB_RHOMR : 59- 64: pdpek Wdy--DvG ghgwg LAMI_CLOTM : 221- 227: igvde WlgryD-G rtplq R 18: 11.0102 20( 13) D-x(3,4)-G-x(2,4)-T Occurences: 20(13) AGAR_STRCO : 59- 68: pshsd DfnytGkpq-T frgrw AGAR_STRCO : 197- 206: kgyfa Dgsy-GyngeT gqvfg CGKA_ALTCA : 217- 226: fdprn DfhtyGvnv-T kdkit E13B_BACCI : 118- 127: wghws DggfnGywf-T lsatt E13B_BACCI : 226- 233: sgwiy Dhnf-Gqf--T dgggg E13B_BACCI : 409- 416: vsdqe Disi-Gtp--T dpaia E13B_BACCI : 429- 438: nliwq Defn-GttldT skwny GUB_BACAM : 132- 140: pwdei DieflGkd--T tkvqf GUB_BACAM : 132- 141: pwdei DieflGkdt-T kvqfn GUB_BACBR : 144- 152: pwdei DieflGkd--T triqf GUB_BACBR : 144- 153: pwdei DieflGkdt-T riqfn GUB_BACLI : 136- 144: pwdei DieflGkd--T tkvqf GUB_BACLI : 136- 145: pwdei DieflGkdt-T kvqfn GUB_BACMA : 130- 138: qwdei DieflGkd--T tkvqf GUB_BACMA : 130- 139: qwdei DieflGkdt-T kvqfn GUB_BACMA : 162- 169: islgf Dask-Gfh--T yafdw GUB_BACPO : 131- 139: qwdei DieflGkd--T tkvqf GUB_BACPO : 131- 140: qwdei DieflGkdt-T kvqfn GUB_BACSU : 135- 143: pwdei DieflGkd--T tkvqf GUB_BACSU : 135- 144: pwdei DieflGkdt-T kvqfn GUB_CLOTM : 138- 146: pwdei DieflGkd--T tkvqf GUB_CLOTM : 138- 147: pwdei DieflGkdt-T kvqfn GUB_CLOTM : 308- 318: dqsva DvnrdGridsT dltml GUB_FIBSU : 217- 227: nfdtf DgsrwGkgdwT fdgnr GUB_RHOMR : 170- 178: vgfnp Dvvh-Gtvh-T kaynh LAMI_CLOTM : 68- 77: eaftg Disn-GkmilT ldrey LAMI_CLOTM : 136- 144: pwdei DieflGkd--T tkvqf LAMI_CLOTM : 136- 145: pwdei DieflGkdt-T kvqfn S 19: 11.0102 24( 13) G-x(1,2)-G-x(0,2)-E Occurences: 24(13) AGAR_STRCO : 201- 205: adgsy GynG--E tgqvf CGKA_ALTCA : 121- 127: ksrat GnyGyyE arikg E13B_BACCI : 457- 462: dpatw Gw-GnaE lqhyt GUB_BACAM : 96- 101: svqty Gy-GlyE vrmkp GUB_BACAM : 151- 156: nyytn Ga-GnhE kfadl GUB_BACBR : 163- 168: nyftn GvgGn-E fyydl GUB_BACBR : 163- 168: nyftn Gv-GgnE fyydl GUB_BACLI : 100- 105: svqty Gy-GlyE vnmkp GUB_BACLI : 155- 160: nyytn Gv-GnhE kivnl GUB_BACLI : 215- 220: mnlwn Ga-GvdE wlgsy GUB_BACMA : 94- 99: stniy Gy-GlyE vsmkp GUB_BACMA : 149- 154: nyytn GvgGh-E kvisl GUB_BACMA : 149- 154: nyytn Gv-GghE kvisl GUB_BACPO : 95- 100: stnny Gy-GlyE vsmkp GUB_BACPO : 150- 155: nyytn GvgGh-E kiinl GUB_BACPO : 150- 155: nyytn Gv-GghE kiinl GUB_BACSU : 99- 104: svqty Gy-GlyE vrmkp GUB_BACSU : 154- 159: nyytn Ga-GnhE kivdl GUB_BACSU : 214- 219: mnlwn Gt-GvdE wlgsy GUB_CLOTM : 102- 107: tksff Gy-GyyE vrmka GUB_CLOTM : 157- 162: nwykn GvgGn-E ylhnl GUB_CLOTM : 157- 162: nwykn Gv-GgnE ylhnl GUB_CLOTM : 217- 222: mnlwp Gi-GvdE wlgry GUB_FIBSU : 197- 200: ykytp Gq-G--E ggsdf GUB_RHOMR : 67- 72: dvggh Gw-GnqE lqyyt LAMI_CLOTM : 100- 105: tksff Gy-GyyE vrmka LAMI_CLOTM : 155- 160: nwykn GvgGn-E ylhnl LAMI_CLOTM : 155- 160: nwykn Gv-GgnE ylhnl LAMI_CLOTM : 215- 220: mnlwp Gi-GvdE wlgry T 20: 11.0102 19( 13) N-x(1,2)-V-x(1,3)-G Occurences: 19(13) AGAR_STRCO : 100- 105: wvadg NliVe--G rrapd CGKA_ALTCA : 73- 79: swkne NatVsn-G klklt CGKA_ALTCA : 184- 190: dhdlh NivVkn-G kptwm CGKA_ALTCA : 184- 190: dhdlh Ni-VvknG kptwm E13B_BACCI : 472- 478: tnstq NvyVqd-G klnik E13B_BACCI : 649- 654: fylim NlaVg--G nfdgg GUB_BACAM : 89- 96: fdcge NrsVqtyG yglye GUB_BACBR : 162- 166: fnyft Ng-Vg--G nefyy GUB_BACLI : 93- 100: fdcge NrsVqtyG yglye GUB_BACMA : 148- 152: fnyyt Ng-Vg--G hekvi GUB_BACPO : 149- 153: fnyyt Ng-Vg--G hekii GUB_BACSU : 92- 99: fdcge NrsVqtyG yglye GUB_CLOTM : 156- 160: fnwyk Ng-Vg--G neylh GUB_CLOTM : 202- 208: yrgtr NipVtp-G kimmn GUB_FIBSU : 326- 332: akehr Nl-VnakG akvnp GUB_RHOMR : 83- 88: rarie NarVg--G gvlii GUB_RHOMR : 83- 89: rarie NarVgg-G vliie GUB_RHOMR : 168- 174: ehvgf NpdVvh-G tvhtk GUB_RHOMR : 252- 257: fhlim NiaVg--G awggq LAMI_CLOTM : 154- 158: fnwyk Ng-Vg--G neylh LAMI_CLOTM : 200- 206: yrgtr NipVtp-G kimmn Number of patterns evaluated by Pratt:2091 Total running time: 2 seconds