------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 16 sequences from file GLYCOSYL_HYDROL_F11_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 16 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GLYCOSYL_HYDROL_F11_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: XYL1_COCCA 221 XYN1_TRIRE 229 XYN2_TRIRE 222 XYNA_BACCI 213 XYNA_BACPU 228 XYNA_BACST 211 XYNA_BACSU 213 XYNA_CLOAB 261 XYNA_CLOSR 511 XYNA_NEOPA 607 XYNA_RUMFL 954 XYNA_SCHCO 197 XYNB_STRLI 333 XYNC_ASPAK 211 XYNC_FIBSU 608 XYNC_STRLI 240 Pratt run started at Thu Feb 6 19:36:05 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 28.6904 18( 16) G-x(2)-T-x(0,1)-F-x-Q-x(2)-S-V-R 2: 28.6904 20( 16) G-x(2,3)-T-F-x-Q-x(2)-S-V-R 3: 27.1904 18( 16) G-x(0,2)-T-x(0,2)-F-x-Q-x(2)-S-V-R 4: 25.0203 18( 16) T-F-x-Q-x(2)-S-V-R 5: 24.0203 32( 16) T-x(0,2)-F-x-Q-x(2)-S-V-R 6: 20.8503 18( 16) F-x-Q-x(2)-S-V-R 7: 16.6802 18( 16) Q-x(2)-S-V-R 8: 15.1802 18( 16) T-x(0,1)-T-x(2)-Q-x(2,4)-S 9: 15.1802 18( 16) P-S-x(2,3)-G-x(0,2)-T 10: 15.1802 18( 16) P-x(0,1)-S-x(2)-G-x(0,2)-T 11: 15.1802 21( 16) R-x(4,5)-S-x(0,2)-G-x(2)-T 12: 14.6802 19( 16) P-x(0,2)-S-x(2)-G-x(0,2)-T 13: 14.6802 18( 16) T-x-T-x(0,2)-Q-x(2,4)-S 14: 14.6802 21( 16) I-x(2,4)-T-x(0,2)-T-x(5)-S 15: 14.6802 16( 16) S-x(5)-T-x(2,4)-Q-x(3,5)-V 16: 12.5102 18( 16) S-V-R 17: 12.5102 20( 16) S-x(2)-G-x(2)-T 18: 12.5102 18( 16) E-Y-Y 19: 12.5102 18( 16) Y-G-W 20: 12.5102 21( 16) G-x(5)-V-x-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 39.2324 17( 16) G-x(2)-T-x(0,1)-F-x-Q-[FY]-x-S-V-R-x-[NPQST]-x(2)-[APST]-x-[GN] B 2: 39.2324 19( 16) G-x(2,3)-T-F-x-Q-[FY]-x-S-V-R-x-[NPQST]-x(2)-[APST]-x-[GN] C 3: 37.7324 17( 16) G-x(0,2)-T-x(0,2)-F-x-Q-[FY]-x-S-V-R-x-[NPQST]-x(2)-[APST]-x-[GN] D 4: 35.5624 17( 16) T-F-x-Q-[FY]-x-S-V-R-x-[NPQST]-x(2)-[APST]-x-[GN] E 5: 34.5624 31( 16) T-x(0,2)-F-x-Q-[FY]-x-S-V-R-x-[NPQST]-x(2)-[APST]-x-[GN] F 6: 31.3923 17( 16) F-x-Q-[FY]-x-S-V-R-x-[NPQST]-x(2)-[APST]-x-[GN] G 7: 30.6694 16( 16) E-Y-Y-[IV]-[IMV]-[DE]-[DGNS]-x(2)-[DNST]-x(2)-[AGP]-x-[AGNST] H 8: 28.2078 17( 16) F-x-Q-x(2)-S-V-R-x-[NPQST]-x(2)-[APST]-x-[GN] I 9: 27.2223 17( 16) Q-[FY]-x-S-V-R-x-[NPQST]-x(2)-[APST]-x-[GN] J 10: 23.6139 17( 16) T-x(0,1)-T-[FHY]-x-Q-x(2,4)-S-[GIV]-[NR] K 11: 23.3370 16( 16) P-x(0,2)-S-[AGILV]-x-G-x(0,2)-T-x(2)-[GQT]-x(3)-[NSTV]-x(2)-[NPQST] L 12: 22.2589 16( 16) P-S-x(2,3)-G-x(0,2)-T-x(2)-[GQT]-x(3)-[NSTV]-x(2)-[NQST] M 13: 22.2589 16( 16) P-x(0,1)-S-x(2)-G-x(0,2)-T-x(2)-[GQT]-x(3)-[NSTV]-x(2)-[NQST] N 14: 22.1057 16( 16) S-[AILV]-x-[GQ]-x(2)-T-x(2,4)-Q-x(3,5)-V-x(2)-[GNPST] O 15: 20.5188 17( 16) T-x-T-x(0,2)-Q-x(2,4)-S-[GIV]-[NR] P 16: 20.1245 19( 16) R-x(4,5)-S-x(0,2)-G-x(2)-T-x(2)-[DNQT]-x-[FWY] Q 17: 19.8677 17( 16) S-V-R-x-[NPQST]-x(2)-[APST]-x-[GN] R 18: 19.5763 16( 16) S-x(2)-G-x(2)-T-x(2)-[GQT]-x(3)-[DSTV]-x(2)-[NQST] S 19: 14.6802 21( 16) I-x(2,4)-T-x(0,2)-T-x(5)-S T 20: 14.6802 16( 16) S-x(5)-T-x(2,4)-Q-x(3,5)-V Best patterns with alignements: fitness hits(seqs) Pattern A 1: 39.2324 17( 16) G-x(2)-T-x(0,1)-F-x-Q-[FY]-x-S-V-R-x-[NPQST]-x(2)-[APST]-x-[GN] Occurences: 17(16) XYL1_COCCA : 159- 177: qpsid GtrT-FqQYwSVRqNkrSsG svnmk XYN1_TRIRE : 168- 186: epsiq GtaT-FnQYiSVRnSprTsG tvtvq XYN2_TRIRE : 162- 180: qpsii GtaT-FyQYwSVRrNhrSsG svnta XYNA_BACCI : 148- 167: apsid GdrTtFtQYwSVRqSkrPtG snati XYNA_BACPU : 162- 180: qpsii GiaT-FkQYwSVRqTkrTsG tvsvs XYNA_BACST : 147- 165: apsid GtqT-FqQFwSVRqSkrPtG snvsi XYNA_BACSU : 148- 167: apsid GdrTtFtQYwSVRqSkrPtG snati XYNA_CLOAB : 195- 213: qpsiq GntT-FkQYwSVRrTkrTsG tisvs XYNA_CLOSR : 168- 186: qpsid GtaT-FqQYwSVRtSkrTsG tisvt XYNA_NEOPA : 182- 200: pting GseT-FkQYfSVRqQkrTsG hitvs XYNA_NEOPA : 427- 445: pting GseT-FkQYfSVRqQkrTsG hitvs XYNA_RUMFL : 167- 185: qpsld GtaT-FpQYwSVRqTsgSaN nqtny XYNA_SCHCO : 131- 149: apsid GtqT-FeQFwSVRnPkkApG gsisg XYNB_STRLI : 169- 187: kpsve GtrT-FdQYwSVRqSkrTgG tittg XYNC_ASPAK : 150- 168: epsit GtsT-FtQYfSVReStrTsG tvtva XYNC_FIBSU : 454- 472: qpsik GtqT-FpQYfSVRkSarScG hidit XYNC_STRLI : 176- 194: apsve GtkT-FqQYwSVRqSkvTsG sgtit B 2: 39.2324 19( 16) G-x(2,3)-T-F-x-Q-[FY]-x-S-V-R-x-[NPQST]-x(2)-[APST]-x-[GN] Occurences: 19(16) XYL1_COCCA : 159- 177: qpsid Gtr-TFqQYwSVRqNkrSsG svnmk XYN1_TRIRE : 168- 186: epsiq Gta-TFnQYiSVRnSprTsG tvtvq XYN2_TRIRE : 162- 180: qpsii Gta-TFyQYwSVRrNhrSsG svnta XYNA_BACCI : 148- 167: apsid GdrtTFtQYwSVRqSkrPtG snati XYNA_BACPU : 162- 180: qpsii Gia-TFkQYwSVRqTkrTsG tvsvs XYNA_BACST : 147- 165: apsid Gtq-TFqQFwSVRqSkrPtG snvsi XYNA_BACSU : 148- 167: apsid GdrtTFtQYwSVRqSkrPtG snati XYNA_CLOAB : 195- 213: qpsiq Gnt-TFkQYwSVRrTkrTsG tisvs XYNA_CLOSR : 168- 186: qpsid Gta-TFqQYwSVRtSkrTsG tisvt XYNA_NEOPA : 181- 200: gptin GgseTFkQYfSVRqQkrTsG hitvs XYNA_NEOPA : 182- 200: pting Gse-TFkQYfSVRqQkrTsG hitvs XYNA_NEOPA : 426- 445: gptin GgseTFkQYfSVRqQkrTsG hitvs XYNA_NEOPA : 427- 445: pting Gse-TFkQYfSVRqQkrTsG hitvs XYNA_RUMFL : 167- 185: qpsld Gta-TFpQYwSVRqTsgSaN nqtny XYNA_SCHCO : 131- 149: apsid Gtq-TFeQFwSVRnPkkApG gsisg XYNB_STRLI : 169- 187: kpsve Gtr-TFdQYwSVRqSkrTgG tittg XYNC_ASPAK : 150- 168: epsit Gts-TFtQYfSVReStrTsG tvtva XYNC_FIBSU : 454- 472: qpsik Gtq-TFpQYfSVRkSarScG hidit XYNC_STRLI : 176- 194: apsve Gtk-TFqQYwSVRqSkvTsG sgtit C 3: 37.7324 17( 16) G-x(0,2)-T-x(0,2)-F-x-Q-[FY]-x-S-V-R-x-[NPQST]-x(2)-[APST]-x-[GN] Occurences: 17(16) XYL1_COCCA : 159- 177: qpsid GtrT--FqQYwSVRqNkrSsG svnmk XYL1_COCCA : 159- 177: qpsid G--TrtFqQYwSVRqNkrSsG svnmk XYN1_TRIRE : 168- 186: epsiq GtaT--FnQYiSVRnSprTsG tvtvq XYN1_TRIRE : 168- 186: epsiq G--TatFnQYiSVRnSprTsG tvtvq XYN2_TRIRE : 162- 180: qpsii GtaT--FyQYwSVRrNhrSsG svnta XYN2_TRIRE : 162- 180: qpsii G--TatFyQYwSVRrNhrSsG svnta XYNA_BACCI : 148- 167: apsid GdrTt-FtQYwSVRqSkrPtG snati XYNA_BACPU : 162- 180: qpsii GiaT--FkQYwSVRqTkrTsG tvsvs XYNA_BACST : 147- 165: apsid GtqT--FqQFwSVRqSkrPtG snvsi XYNA_BACST : 147- 165: apsid G--TqtFqQFwSVRqSkrPtG snvsi XYNA_BACSU : 148- 167: apsid GdrTt-FtQYwSVRqSkrPtG snati XYNA_CLOAB : 195- 213: qpsiq GntT--FkQYwSVRrTkrTsG tisvs XYNA_CLOAB : 195- 213: qpsiq Gn-Tt-FkQYwSVRrTkrTsG tisvs XYNA_CLOSR : 168- 186: qpsid GtaT--FqQYwSVRtSkrTsG tisvt XYNA_CLOSR : 168- 186: qpsid G--TatFqQYwSVRtSkrTsG tisvt XYNA_NEOPA : 182- 200: pting GseT--FkQYfSVRqQkrTsG hitvs XYNA_NEOPA : 427- 445: pting GseT--FkQYfSVRqQkrTsG hitvs XYNA_RUMFL : 167- 185: qpsld GtaT--FpQYwSVRqTsgSaN nqtny XYNA_RUMFL : 167- 185: qpsld G--TatFpQYwSVRqTsgSaN nqtny XYNA_SCHCO : 131- 149: apsid GtqT--FeQFwSVRnPkkApG gsisg XYNA_SCHCO : 131- 149: apsid G--TqtFeQFwSVRnPkkApG gsisg XYNB_STRLI : 169- 187: kpsve GtrT--FdQYwSVRqSkrTgG tittg XYNB_STRLI : 169- 187: kpsve G--TrtFdQYwSVRqSkrTgG tittg XYNC_ASPAK : 150- 168: epsit GtsT--FtQYfSVReStrTsG tvtva XYNC_ASPAK : 150- 168: epsit G--TstFtQYfSVReStrTsG tvtva XYNC_FIBSU : 454- 472: qpsik GtqT--FpQYfSVRkSarScG hidit XYNC_FIBSU : 454- 472: qpsik G--TqtFpQYfSVRkSarScG hidit XYNC_STRLI : 176- 194: apsve GtkT--FqQYwSVRqSkvTsG sgtit XYNC_STRLI : 176- 194: apsve G--TktFqQYwSVRqSkvTsG sgtit D 4: 35.5624 17( 16) T-F-x-Q-[FY]-x-S-V-R-x-[NPQST]-x(2)-[APST]-x-[GN] Occurences: 17(16) XYL1_COCCA : 162- 177: idgtr TFqQYwSVRqNkrSsG svnmk XYN1_TRIRE : 171- 186: iqgta TFnQYiSVRnSprTsG tvtvq XYN2_TRIRE : 165- 180: iigta TFyQYwSVRrNhrSsG svnta XYNA_BACCI : 152- 167: dgdrt TFtQYwSVRqSkrPtG snati XYNA_BACPU : 165- 180: iigia TFkQYwSVRqTkrTsG tvsvs XYNA_BACST : 150- 165: idgtq TFqQFwSVRqSkrPtG snvsi XYNA_BACSU : 152- 167: dgdrt TFtQYwSVRqSkrPtG snati XYNA_CLOAB : 198- 213: iqgnt TFkQYwSVRrTkrTsG tisvs XYNA_CLOSR : 171- 186: idgta TFqQYwSVRtSkrTsG tisvt XYNA_NEOPA : 185- 200: nggse TFkQYfSVRqQkrTsG hitvs XYNA_NEOPA : 430- 445: nggse TFkQYfSVRqQkrTsG hitvs XYNA_RUMFL : 170- 185: ldgta TFpQYwSVRqTsgSaN nqtny XYNA_SCHCO : 134- 149: idgtq TFeQFwSVRnPkkApG gsisg XYNB_STRLI : 172- 187: vegtr TFdQYwSVRqSkrTgG tittg XYNC_ASPAK : 153- 168: itgts TFtQYfSVReStrTsG tvtva XYNC_FIBSU : 457- 472: ikgtq TFpQYfSVRkSarScG hidit XYNC_STRLI : 179- 194: vegtk TFqQYwSVRqSkvTsG sgtit E 5: 34.5624 31( 16) T-x(0,2)-F-x-Q-[FY]-x-S-V-R-x-[NPQST]-x(2)-[APST]-x-[GN] Occurences: 31(16) XYL1_COCCA : 160- 177: psidg TrtFqQYwSVRqNkrSsG svnmk XYL1_COCCA : 162- 177: idgtr T--FqQYwSVRqNkrSsG svnmk XYN1_TRIRE : 169- 186: psiqg TatFnQYiSVRnSprTsG tvtvq XYN1_TRIRE : 171- 186: iqgta T--FnQYiSVRnSprTsG tvtvq XYN2_TRIRE : 163- 180: psiig TatFyQYwSVRrNhrSsG svnta XYN2_TRIRE : 165- 180: iigta T--FyQYwSVRrNhrSsG svnta XYNA_BACCI : 151- 167: idgdr Tt-FtQYwSVRqSkrPtG snati XYNA_BACCI : 152- 167: dgdrt T--FtQYwSVRqSkrPtG snati XYNA_BACPU : 165- 180: iigia T--FkQYwSVRqTkrTsG tvsvs XYNA_BACST : 148- 165: psidg TqtFqQFwSVRqSkrPtG snvsi XYNA_BACST : 150- 165: idgtq T--FqQFwSVRqSkrPtG snvsi XYNA_BACSU : 151- 167: idgdr Tt-FtQYwSVRqSkrPtG snati XYNA_BACSU : 152- 167: dgdrt T--FtQYwSVRqSkrPtG snati XYNA_CLOAB : 197- 213: siqgn Tt-FkQYwSVRrTkrTsG tisvs XYNA_CLOAB : 198- 213: iqgnt T--FkQYwSVRrTkrTsG tisvs XYNA_CLOSR : 169- 186: psidg TatFqQYwSVRtSkrTsG tisvt XYNA_CLOSR : 171- 186: idgta T--FqQYwSVRtSkrTsG tisvt XYNA_NEOPA : 185- 200: nggse T--FkQYfSVRqQkrTsG hitvs XYNA_NEOPA : 430- 445: nggse T--FkQYfSVRqQkrTsG hitvs XYNA_RUMFL : 168- 185: psldg TatFpQYwSVRqTsgSaN nqtny XYNA_RUMFL : 170- 185: ldgta T--FpQYwSVRqTsgSaN nqtny XYNA_SCHCO : 132- 149: psidg TqtFeQFwSVRnPkkApG gsisg XYNA_SCHCO : 134- 149: idgtq T--FeQFwSVRnPkkApG gsisg XYNB_STRLI : 170- 187: psveg TrtFdQYwSVRqSkrTgG tittg XYNB_STRLI : 172- 187: vegtr T--FdQYwSVRqSkrTgG tittg XYNC_ASPAK : 151- 168: psitg TstFtQYfSVReStrTsG tvtva XYNC_ASPAK : 153- 168: itgts T--FtQYfSVReStrTsG tvtva XYNC_FIBSU : 455- 472: psikg TqtFpQYfSVRkSarScG hidit XYNC_FIBSU : 457- 472: ikgtq T--FpQYfSVRkSarScG hidit XYNC_STRLI : 177- 194: psveg TktFqQYwSVRqSkvTsG sgtit XYNC_STRLI : 179- 194: vegtk T--FqQYwSVRqSkvTsG sgtit F 6: 31.3923 17( 16) F-x-Q-[FY]-x-S-V-R-x-[NPQST]-x(2)-[APST]-x-[GN] Occurences: 17(16) XYL1_COCCA : 163- 177: dgtrt FqQYwSVRqNkrSsG svnmk XYN1_TRIRE : 172- 186: qgtat FnQYiSVRnSprTsG tvtvq XYN2_TRIRE : 166- 180: igtat FyQYwSVRrNhrSsG svnta XYNA_BACCI : 153- 167: gdrtt FtQYwSVRqSkrPtG snati XYNA_BACPU : 166- 180: igiat FkQYwSVRqTkrTsG tvsvs XYNA_BACST : 151- 165: dgtqt FqQFwSVRqSkrPtG snvsi XYNA_BACSU : 153- 167: gdrtt FtQYwSVRqSkrPtG snati XYNA_CLOAB : 199- 213: qgntt FkQYwSVRrTkrTsG tisvs XYNA_CLOSR : 172- 186: dgtat FqQYwSVRtSkrTsG tisvt XYNA_NEOPA : 186- 200: ggset FkQYfSVRqQkrTsG hitvs XYNA_NEOPA : 431- 445: ggset FkQYfSVRqQkrTsG hitvs XYNA_RUMFL : 171- 185: dgtat FpQYwSVRqTsgSaN nqtny XYNA_SCHCO : 135- 149: dgtqt FeQFwSVRnPkkApG gsisg XYNB_STRLI : 173- 187: egtrt FdQYwSVRqSkrTgG tittg XYNC_ASPAK : 154- 168: tgtst FtQYfSVReStrTsG tvtva XYNC_FIBSU : 458- 472: kgtqt FpQYfSVRkSarScG hidit XYNC_STRLI : 180- 194: egtkt FqQYwSVRqSkvTsG sgtit G 7: 30.6694 16( 16) E-Y-Y-[IV]-[IMV]-[DE]-[DGNS]-x(2)-[DNST]-x(2)-[AGP]-x-[AGNST] Occurences: 16(16) XYL1_COCCA : 115- 129: rnplv EYYVVENfgTydPsS qsqnk XYN1_TRIRE : 126- 140: tnplv EYYIMEDnhNypAqG tvkgt XYN2_TRIRE : 118- 132: rnpli EYYIVENfgTynPsT gatkl XYNA_BACCI : 106- 120: rspli EYYVVDSwgTyrPtG tykgt XYNA_BACPU : 120- 134: qspla EYYIVDSwgTyrPtG aykgs XYNA_BACST : 104- 118: rnali EYYVVDSwgTyrAtG nyesg XYNA_BACSU : 106- 120: rspli EYYVVDSwgTyrPtG tykgt XYNA_CLOAB : 152- 166: ssplv EYYIVDSwgSwrPpG gtskg XYNA_CLOSR : 124- 138: rnplv EYYIVESwgSwrPpG atpkg XYNA_NEOPA : 386- 400: gvplv EYYIIEDwvDwvPdA qgkmv XYNA_RUMFL : 122- 136: rnplm EYYIVEGwgDwrPpG ndgev XYNA_SCHCO : 87- 101: rssli EYYIVESygSydPsS aashk XYNB_STRLI : 127- 141: snplv EYYIVDNwgTyrPtG eykgt XYNC_ASPAK : 106- 120: nypqa EYYIVEDygDynPcS satsl XYNC_FIBSU : 409- 423: vdplv EYYIVDDwfNkpGaN llgqr XYNC_STRLI : 134- 148: snplv EYYIVDNwgSyrPtG tykgt H 8: 28.2078 17( 16) F-x-Q-x(2)-S-V-R-x-[NPQST]-x(2)-[APST]-x-[GN] Occurences: 17(16) XYL1_COCCA : 163- 177: dgtrt FqQywSVRqNkrSsG svnmk XYN1_TRIRE : 172- 186: qgtat FnQyiSVRnSprTsG tvtvq XYN2_TRIRE : 166- 180: igtat FyQywSVRrNhrSsG svnta XYNA_BACCI : 153- 167: gdrtt FtQywSVRqSkrPtG snati XYNA_BACPU : 166- 180: igiat FkQywSVRqTkrTsG tvsvs XYNA_BACST : 151- 165: dgtqt FqQfwSVRqSkrPtG snvsi XYNA_BACSU : 153- 167: gdrtt FtQywSVRqSkrPtG snati XYNA_CLOAB : 199- 213: qgntt FkQywSVRrTkrTsG tisvs XYNA_CLOSR : 172- 186: dgtat FqQywSVRtSkrTsG tisvt XYNA_NEOPA : 186- 200: ggset FkQyfSVRqQkrTsG hitvs XYNA_NEOPA : 431- 445: ggset FkQyfSVRqQkrTsG hitvs XYNA_RUMFL : 171- 185: dgtat FpQywSVRqTsgSaN nqtny XYNA_SCHCO : 135- 149: dgtqt FeQfwSVRnPkkApG gsisg XYNB_STRLI : 173- 187: egtrt FdQywSVRqSkrTgG tittg XYNC_ASPAK : 154- 168: tgtst FtQyfSVReStrTsG tvtva XYNC_FIBSU : 458- 472: kgtqt FpQyfSVRkSarScG hidit XYNC_STRLI : 180- 194: egtkt FqQywSVRqSkvTsG sgtit I 9: 27.2223 17( 16) Q-[FY]-x-S-V-R-x-[NPQST]-x(2)-[APST]-x-[GN] Occurences: 17(16) XYL1_COCCA : 165- 177: trtfq QYwSVRqNkrSsG svnmk XYN1_TRIRE : 174- 186: tatfn QYiSVRnSprTsG tvtvq XYN2_TRIRE : 168- 180: tatfy QYwSVRrNhrSsG svnta XYNA_BACCI : 155- 167: rttft QYwSVRqSkrPtG snati XYNA_BACPU : 168- 180: iatfk QYwSVRqTkrTsG tvsvs XYNA_BACST : 153- 165: tqtfq QFwSVRqSkrPtG snvsi XYNA_BACSU : 155- 167: rttft QYwSVRqSkrPtG snati XYNA_CLOAB : 201- 213: nttfk QYwSVRrTkrTsG tisvs XYNA_CLOSR : 174- 186: tatfq QYwSVRtSkrTsG tisvt XYNA_NEOPA : 188- 200: setfk QYfSVRqQkrTsG hitvs XYNA_NEOPA : 433- 445: setfk QYfSVRqQkrTsG hitvs XYNA_RUMFL : 173- 185: tatfp QYwSVRqTsgSaN nqtny XYNA_SCHCO : 137- 149: tqtfe QFwSVRnPkkApG gsisg XYNB_STRLI : 175- 187: trtfd QYwSVRqSkrTgG tittg XYNC_ASPAK : 156- 168: tstft QYfSVReStrTsG tvtva XYNC_FIBSU : 460- 472: tqtfp QYfSVRkSarScG hidit XYNC_STRLI : 182- 194: tktfq QYwSVRqSkvTsG sgtit J 10: 23.6139 17( 16) T-x(0,1)-T-[FHY]-x-Q-x(2,4)-S-[GIV]-[NR] Occurences: 17(16) XYL1_COCCA : 160- 170: psidg TrTFqQyw--SVR qnkrs XYN1_TRIRE : 169- 179: psiqg TaTFnQyi--SVR nsprt XYN2_TRIRE : 163- 173: psiig TaTFyQyw--SVR rnhrs XYNA_BACCI : 151- 160: idgdr T-TFtQyw--SVR qskrp XYNA_BACPU : 83- 95: kkfds TrTHhQlgniSIN ynasf XYNA_BACST : 148- 158: psidg TqTFqQfw--SVR qskrp XYNA_BACSU : 151- 160: idgdr T-TFtQyw--SVR qskrp XYNA_CLOAB : 115- 127: kkfnd TqTYkQlgniSVN ydcny XYNA_CLOAB : 197- 206: siqgn T-TFkQyw--SVR rtkrt XYNA_CLOSR : 169- 179: psidg TaTFqQyw--SVR tskrt XYNA_NEOPA : 108- 120: igldy TaTYrQtgsaSGN srlcv XYNA_RUMFL : 168- 178: psldg TaTFpQyw--SVR qtsgs XYNA_SCHCO : 132- 142: psidg TqTFeQfw--SVR npkka XYNB_STRLI : 170- 180: psveg TrTFdQyw--SVR qskrt XYNC_ASPAK : 151- 161: psitg TsTFtQyf--SVR estrt XYNC_FIBSU : 455- 465: psikg TqTFpQyf--SVR ksars XYNC_STRLI : 177- 187: psveg TkTFqQyw--SVR qskvt K 11: 23.3370 16( 16) P-x(0,2)-S-[AGILV]-x-G-x(0,2)-T-x(2)-[GQT]-x(3)-[NSTV]-x(2)-[NPQST] Occurences: 16(16) XYL1_COCCA : 155- 172: trtnq P--SIdGtrTfqQywsVrqN krssg XYN1_TRIRE : 164- 181: trvne P--SIqGtaTfnQyisVrnS prtsg XYN2_TRIRE : 158- 175: qrvnq P--SIiGtaTfyQywsVrrN hrssg XYNA_BACCI : 144- 161: tryna P--SIdGdrTtfTqywSvrQ skrpt XYNA_BACPU : 158- 175: trvnq P--SIiGiaTfkQywsVrqT krtsg XYNA_BACST : 143- 160: mryna P--SIdGtqTfqQfwsVrqS krptg XYNA_BACSU : 144- 161: tryna P--SIdGdrTtfTqywSvrQ skrpt XYNA_CLOAB : 191- 208: trinq P--SIqGntTfkQywsVrrT krtsg XYNA_CLOSR : 164- 181: trvnq P--SIdGtaTfqQywsVrtS krtsg XYNA_NEOPA : 262- 280: stgtv PssSAgGs-TanGkkfTvgN gqnqh XYNA_RUMFL : 163- 180: mrynq P--SLdGtaTfpQywsVrqT sgsan XYNA_SCHCO : 127- 144: wryna P--SIdGtqTfeQfwsVrnP kkapg XYNB_STRLI : 165- 182: trvnk P--SVeGtrTfdQywsVrqS krtgg XYNC_ASPAK : 146- 163: trtne P--SItGtsTftQyfsVreS trtsg XYNC_FIBSU : 450- 467: trvqq P--SIkGtqTfpQyfsVrkS arscg XYNC_STRLI : 172- 189: tryna P--SVeGtkTfqQywsVrqS kvtsg L 12: 22.2589 16( 16) P-S-x(2,3)-G-x(0,2)-T-x(2)-[GQT]-x(3)-[NSTV]-x(2)-[NQST] Occurences: 16(16) XYL1_COCCA : 155- 172: trtnq PSid-GtrTfqQywsVrqN krssg XYN1_TRIRE : 164- 181: trvne PSiq-GtaTfnQyisVrnS prtsg XYN2_TRIRE : 158- 175: qrvnq PSii-GtaTfyQywsVrrN hrssg XYNA_BACCI : 144- 161: tryna PSid-GdrTtfTqywSvrQ skrpt XYNA_BACPU : 158- 175: trvnq PSii-GiaTfkQywsVrqT krtsg XYNA_BACST : 143- 160: mryna PSid-GtqTfqQfwsVrqS krptg XYNA_BACSU : 144- 161: tryna PSid-GdrTtfTqywSvrQ skrpt XYNA_CLOAB : 191- 208: trinq PSiq-GntTfkQywsVrrT krtsg XYNA_CLOSR : 164- 181: trvnq PSid-GtaTfqQywsVrtS krtsg XYNA_NEOPA : 262- 280: stgtv PSssaGgsTanGkkfTvgN gqnqh XYNA_RUMFL : 163- 180: mrynq PSld-GtaTfpQywsVrqT sgsan XYNA_SCHCO : 4- 19: sgt PSst-G--TdgGyyySwwT dgagd XYNB_STRLI : 165- 182: trvnk PSve-GtrTfdQywsVrqS krtgg XYNC_ASPAK : 146- 163: trtne PSit-GtsTftQyfsVreS trtsg XYNC_FIBSU : 450- 467: trvqq PSik-GtqTfpQyfsVrkS arscg XYNC_STRLI : 172- 189: tryna PSve-GtkTfqQywsVrqS kvtsg M 13: 22.2589 16( 16) P-x(0,1)-S-x(2)-G-x(0,2)-T-x(2)-[GQT]-x(3)-[NSTV]-x(2)-[NQST] Occurences: 16(16) XYL1_COCCA : 155- 172: trtnq P-SidGtrTfqQywsVrqN krssg XYN1_TRIRE : 164- 181: trvne P-SiqGtaTfnQyisVrnS prtsg XYN2_TRIRE : 158- 175: qrvnq P-SiiGtaTfyQywsVrrN hrssg XYNA_BACCI : 144- 161: tryna P-SidGdrTtfTqywSvrQ skrpt XYNA_BACPU : 158- 175: trvnq P-SiiGiaTfkQywsVrqT krtsg XYNA_BACST : 143- 160: mryna P-SidGtqTfqQfwsVrqS krptg XYNA_BACSU : 144- 161: tryna P-SidGdrTtfTqywSvrQ skrpt XYNA_CLOAB : 191- 208: trinq P-SiqGntTfkQywsVrrT krtsg XYNA_CLOSR : 164- 181: trvnq P-SidGtaTfqQywsVrtS krtsg XYNA_NEOPA : 262- 280: stgtv PsSsaGgsTanGkkfTvgN gqnqh XYNA_RUMFL : 163- 180: mrynq P-SldGtaTfpQywsVrqT sgsan XYNA_SCHCO : 4- 19: sgt P-SstG--TdgGyyySwwT dgagd XYNB_STRLI : 165- 182: trvnk P-SveGtrTfdQywsVrqS krtgg XYNC_ASPAK : 146- 163: trtne P-SitGtsTftQyfsVreS trtsg XYNC_FIBSU : 450- 467: trvqq P-SikGtqTfpQyfsVrkS arscg XYNC_STRLI : 172- 189: tryna P-SveGtkTfqQywsVrqS kvtsg N 14: 22.1057 16( 16) S-[AILV]-x-[GQ]-x(2)-T-x(2,4)-Q-x(3,5)-V-x(2)-[GNPST] Occurences: 16(16) XYL1_COCCA : 156- 172: rtnqp SIdGtrTfq--Qyws--VrqN krssg XYN1_TRIRE : 165- 181: rvnep SIqGtaTfn--Qyis--VrnS prtsg XYN2_TRIRE : 159- 175: rvnqp SIiGtaTfy--Qyws--VrrN hrssg XYNA_BACCI : 145- 162: rynap SIdGdrTtft-Qyws--VrqS krptg XYNA_BACPU : 159- 175: rvnqp SIiGiaTfk--Qyws--VrqT krtsg XYNA_BACST : 144- 160: rynap SIdGtqTfq--Qfws--VrqS krptg XYNA_BACSU : 145- 162: rynap SIdGdrTtft-Qyws--VrqS krptg XYNA_CLOAB : 192- 208: rinqp SIqGntTfk--Qyws--VrrT krtsg XYNA_CLOSR : 165- 181: rvnqp SIdGtaTfq--Qyws--VrtS krtsg XYNA_NEOPA : 26- 46: gggga SAgQrlTvgngQtqhkgVadG ysyei XYNA_RUMFL : 164- 180: rynqp SLdGtaTfp--Qyws--VrqT sgsan XYNA_SCHCO : 128- 144: rynap SIdGtqTfe--Qfws--VrnP kkapg XYNB_STRLI : 166- 182: rvnkp SVeGtrTfd--Qyws--VrqS krtgg XYNC_ASPAK : 147- 163: rtnep SItGtsTft--Qyfs--VreS trtsg XYNC_FIBSU : 451- 467: rvqqp SIkGtqTfp--Qyfs--VrkS arscg XYNC_STRLI : 173- 189: rynap SVeGtkTfq--Qyws--VrqS kvtsg O 15: 20.5188 17( 16) T-x-T-x(0,2)-Q-x(2,4)-S-[GIV]-[NR] Occurences: 17(16) XYL1_COCCA : 160- 170: psidg TrTfqQyw--SVR qnkrs XYL1_COCCA : 160- 170: psidg TrTf-Qqyw-SVR qnkrs XYN1_TRIRE : 169- 179: psiqg TaTfnQyi--SVR nsprt XYN2_TRIRE : 163- 173: psiig TaTfyQyw--SVR rnhrs XYNA_BACCI : 152- 160: dgdrt TfT--Qyw--SVR qskrp XYNA_BACPU : 83- 95: kkfds TrThhQlgniSIN ynasf XYNA_BACST : 148- 158: psidg TqTfqQfw--SVR qskrp XYNA_BACST : 148- 158: psidg TqTf-Qqfw-SVR qskrp XYNA_BACSU : 152- 160: dgdrt TfT--Qyw--SVR qskrp XYNA_CLOAB : 115- 127: kkfnd TqTykQlgniSVN ydcny XYNA_CLOSR : 169- 179: psidg TaTfqQyw--SVR tskrt XYNA_CLOSR : 169- 179: psidg TaTf-Qqyw-SVR tskrt XYNA_NEOPA : 108- 120: igldy TaTyrQtgsaSGN srlcv XYNA_RUMFL : 168- 178: psldg TaTfpQyw--SVR qtsgs XYNA_SCHCO : 132- 142: psidg TqTfeQfw--SVR npkka XYNB_STRLI : 170- 180: psveg TrTfdQyw--SVR qskrt XYNC_ASPAK : 151- 161: psitg TsTftQyf--SVR estrt XYNC_ASPAK : 153- 161: itgts TfT--Qyf--SVR estrt XYNC_FIBSU : 455- 465: psikg TqTfpQyf--SVR ksars XYNC_STRLI : 177- 187: psveg TkTfqQyw--SVR qskvt XYNC_STRLI : 177- 187: psveg TkTf-Qqyw-SVR qskvt P 16: 20.1245 19( 16) R-x(4,5)-S-x(0,2)-G-x(2)-T-x(2)-[DNQT]-x-[FWY] Occurences: 19(16) XYL1_COCCA : 151- 167: iaqst Rtnqp-SidGtrTfqQyW svrqn XYN1_TRIRE : 179- 194: qyisv RnsprtS--GtvTvqNhF nawas XYN2_TRIRE : 154- 170: iyrtq Rvnqp-SiiGtaTfyQyW svrrn XYNA_BACCI : 140- 156: iyttt Rynap-SidGdrTtfTqY wsvrq XYNA_BACPU : 154- 170: iyett Rvnqp-SiiGiaTfkQyW svrqt XYNA_BACST : 139- 155: iyttm Rynap-SidGtqTfqQfW svrqs XYNA_BACSU : 140- 156: iyttt Rynap-SidGdrTtfTqY wsvrq XYNA_CLOAB : 187- 203: iyett Rinqp-SiqGntTfkQyW svrrt XYNA_CLOSR : 160- 176: iyett Rvnqp-SidGtaTfqQyW svrts XYNA_NEOPA : 193- 208: qyfsv RqqkrtS--GhiTvsDhF kewak XYNA_NEOPA : 438- 453: qyfsv RqqkrtS--GhiTvsDhF kewak XYNA_RUMFL : 159- 175: irktm Rynqp-SldGtaTfpQyW svrqt XYNA_SCHCO : 123- 139: ilstw Rynap-SidGtqTfeQfW svrnp XYNB_STRLI : 161- 177: iyktt Rvnkp-SveGtrTfdQyW svrqs XYNC_ASPAK : 142- 158: vctdt Rtnep-SitGtsTftQyF svres XYNC_ASPAK : 161- 176: qyfsv RestrtS--GtvTvaNhF nfwaq XYNC_FIBSU : 446- 462: iwqnt Rvqqp-SikGtqTfpQyF svrks XYNC_STRLI : 168- 184: iyqtt Rynap-SveGtkTfqQyW svrqs XYNC_STRLI : 187- 204: qywsv RqskvtSgsGtiTtgNhF dawar Q 17: 19.8677 17( 16) S-V-R-x-[NPQST]-x(2)-[APST]-x-[GN] Occurences: 17(16) XYL1_COCCA : 168- 177: fqqyw SVRqNkrSsG svnmk XYN1_TRIRE : 177- 186: fnqyi SVRnSprTsG tvtvq XYN2_TRIRE : 171- 180: fyqyw SVRrNhrSsG svnta XYNA_BACCI : 158- 167: ftqyw SVRqSkrPtG snati XYNA_BACPU : 171- 180: fkqyw SVRqTkrTsG tvsvs XYNA_BACST : 156- 165: fqqfw SVRqSkrPtG snvsi XYNA_BACSU : 158- 167: ftqyw SVRqSkrPtG snati XYNA_CLOAB : 204- 213: fkqyw SVRrTkrTsG tisvs XYNA_CLOSR : 177- 186: fqqyw SVRtSkrTsG tisvt XYNA_NEOPA : 191- 200: fkqyf SVRqQkrTsG hitvs XYNA_NEOPA : 436- 445: fkqyf SVRqQkrTsG hitvs XYNA_RUMFL : 176- 185: fpqyw SVRqTsgSaN nqtny XYNA_SCHCO : 140- 149: feqfw SVRnPkkApG gsisg XYNB_STRLI : 178- 187: fdqyw SVRqSkrTgG tittg XYNC_ASPAK : 159- 168: ftqyf SVReStrTsG tvtva XYNC_FIBSU : 463- 472: fpqyf SVRkSarScG hidit XYNC_STRLI : 185- 194: fqqyw SVRqSkvTsG sgtit R 18: 19.5763 16( 16) S-x(2)-G-x(2)-T-x(2)-[GQT]-x(3)-[DSTV]-x(2)-[NQST] Occurences: 16(16) XYL1_COCCA : 156- 172: rtnqp SidGtrTfqQywsVrqN krssg XYN1_TRIRE : 165- 181: rvnep SiqGtaTfnQyisVrnS prtsg XYN2_TRIRE : 159- 175: rvnqp SiiGtaTfyQywsVrrN hrssg XYNA_BACCI : 145- 161: rynap SidGdrTtfTqywSvrQ skrpt XYNA_BACPU : 159- 175: rvnqp SiiGiaTfkQywsVrqT krtsg XYNA_BACST : 144- 160: rynap SidGtqTfqQfwsVrqS krptg XYNA_BACSU : 145- 161: rynap SidGdrTtfTqywSvrQ skrpt XYNA_CLOAB : 192- 208: rinqp SiqGntTfkQywsVrrT krtsg XYNA_CLOSR : 165- 181: rvnqp SidGtaTfqQywsVrtS krtsg XYNA_NEOPA : 264- 280: gtvps SsaGgsTanGkkfTvgN gqnqh XYNA_RUMFL : 164- 180: rynqp SldGtaTfpQywsVrqT sgsan XYNA_SCHCO : 104- 120: pssaa ShkGsvTcnGatyDilS twryn XYNB_STRLI : 166- 182: rvnkp SveGtrTfdQywsVrqS krtgg XYNC_ASPAK : 147- 163: rtnep SitGtsTftQyfsVreS trtsg XYNC_FIBSU : 451- 467: rvqqp SikGtqTfpQyfsVrkS arscg XYNC_STRLI : 173- 189: rynap SveGtkTfqQywsVrqS kvtsg S 19: 14.6802 21( 16) I-x(2,4)-T-x(0,2)-T-x(5)-S Occurences: 21(16) XYL1_COCCA : 157- 168: tnqps Idg--Tr-TfqqywS vrqnk XYN1_TRIRE : 166- 177: vneps Iqg--Ta-TfnqyiS vrnsp XYN2_TRIRE : 160- 171: vnqps Iig--Ta-TfyqywS vrrnh XYNA_BACCI : 135- 145: ggtyd Iyt--T--TrynapS idgdr XYNA_BACCI : 146- 158: ynaps IdgdrT--TftqywS vrqsk XYNA_BACPU : 149- 159: ggtyd Iye--T--TrvnqpS iigia XYNA_BACST : 145- 156: ynaps Idg--Tq-TfqqfwS vrqsk XYNA_BACSU : 135- 145: ggtyd Iyt--T--TrynapS idgdr XYNA_BACSU : 146- 158: ynaps IdgdrT--TftqywS vrqsk XYNA_CLOAB : 182- 192: ggiyd Iye--T--TrinqpS iqgnt XYNA_CLOAB : 193- 204: inqps Iqgn-T--TfkqywS vrrtk XYNA_CLOSR : 155- 165: agtye Iye--T--TrvnqpS idgta XYNA_CLOSR : 166- 177: vnqps Idg--Ta-TfqqywS vrtsk XYNA_NEOPA : 103- 116: tdysy IgldyTa-TyrqtgS asgns XYNA_RUMFL : 918- 930: ipavt Iwg--TqdTvswrsS qnpll XYNA_SCHCO : 129- 140: ynaps Idg--Tq-TfeqfwS vrnpk XYNB_STRLI : 156- 166: ggtyd Iyk--T--TrvnkpS vegtr XYNC_ASPAK : 148- 159: tneps Itg--Ts-TftqyfS vrest XYNC_FIBSU : 452- 463: vqqps Ikg--Tq-TfpqyfS vrksa XYNC_STRLI : 53- 66: haatt IttnqTg-TdgmyyS fwtdg XYNC_STRLI : 163- 173: ggtyd Iyq--T--TrynapS vegtk T 20: 14.6802 16( 16) S-x(5)-T-x(2,4)-Q-x(3,5)-V Occurences: 16(16) XYL1_COCCA : 156- 169: rtnqp SidgtrTfq--Qyws--V rqnkr XYN1_TRIRE : 165- 178: rvnep SiqgtaTfn--Qyis--V rnspr XYN2_TRIRE : 159- 172: rvnqp SiigtaTfy--Qyws--V rrnhr XYNA_BACCI : 145- 159: rynap SidgdrTtft-Qyws--V rqskr XYNA_BACPU : 159- 172: rvnqp SiigiaTfk--Qyws--V rqtkr XYNA_BACST : 144- 157: rynap SidgtqTfq--Qfws--V rqskr XYNA_BACSU : 145- 159: rynap SidgdrTtft-Qyws--V rqskr XYNA_CLOAB : 192- 205: rinqp SiqgntTfk--Qyws--V rrtkr XYNA_CLOSR : 165- 178: rvnqp SidgtaTfq--Qyws--V rtskr XYNA_NEOPA : 26- 43: gggga SagqrlTvgngQtqhkgV adgys XYNA_RUMFL : 164- 177: rynqp SldgtaTfp--Qyws--V rqtsg XYNA_SCHCO : 128- 141: rynap SidgtqTfe--Qfws--V rnpkk XYNB_STRLI : 166- 179: rvnkp SvegtrTfd--Qyws--V rqskr XYNC_ASPAK : 147- 160: rtnep SitgtsTft--Qyfs--V restr XYNC_FIBSU : 451- 464: rvqqp SikgtqTfp--Qyfs--V rksar XYNC_STRLI : 173- 186: rynap SvegtkTfq--Qyws--V rqskv Number of patterns evaluated by Pratt:3110 Total running time: 4 seconds