------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 8 sequences from file GLYCOPROTEASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 8 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GLYCOPROTEASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: GCP_HAEIN 342 GCP_PASHA 325 QRI7_YEAST 407 Y246_MYCLE 290 YGJD_ECOLI 337 YGJD_SALTY 44 YHSH_HALMA 226 YK18_YEAST 421 Pratt run started at Thu Feb 6 19:35:53 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 14.6802 8( 8) I-x(0,2)-E-T-x(0,2)-D 2: 14.6802 8( 8) L-x(1,3)-T-x(5)-G-x(2,4)-I 3: 12.0102 9( 8) V-x-L-x(3,4)-G 4: 12.0102 11( 8) D-x(4)-A-x(1,2)-D 5: 12.0102 9( 8) E-T-x(1,2)-D 6: 11.5102 15( 8) G-G-x(0,2)-V 7: 11.5102 12( 8) L-x(1,2)-A-x(1,2)-G 8: 11.5102 11( 8) S-x(3,4)-L-x(1,2)-A 9: 11.5102 10( 8) S-x(5)-A-x(1,3)-G 10: 11.5102 16( 8) G-x(0,1)-L-x(3,4)-L 11: 11.5102 13( 8) G-x(1,2)-L-x(3,4)-L 12: 11.5102 21( 8) G-x(2,3)-A-x(2,3)-L 13: 11.5102 15( 8) G-x(2,4)-A-x(2)-L 14: 11.5102 15( 8) G-x(1,3)-A-x(2)-L 15: 11.5102 14( 8) D-x(3)-G-x(1,3)-A 16: 11.5102 10( 8) D-x(3,4)-G-x(2,3)-A 17: 11.5102 16( 8) A-x(1,2)-D-x(4,5)-L 18: 11.5102 13( 8) G-x(3,4)-D-x(2,3)-G 19: 11.5102 13( 8) E-x(0,2)-G-x(2)-I 20: 11.5102 11( 8) D-x(1,2)-G-x(1,2)-I Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 22.9676 8( 8) E-T-x(1,2)-D-x-[AT]-x-[GIV]-[AGNST]-x(2)-[CD] B 2: 21.5436 8( 8) I-x(0,2)-E-T-x(0,2)-D-x(3)-[GIPV]-[ADGNS]-x(2)-[CDG] C 3: 19.4949 8( 8) L-x(1,3)-T-x(2)-[DPT]-x(2)-G-x(2,4)-I-x(4)-[DEKR] D 4: 17.7869 9( 8) V-x-L-x(3,4)-G-[AG]-x-[ATV] E 5: 15.6380 9( 8) S-x(3,4)-L-x(1,2)-A-x(2)-[AGLPV]-[AEGN] F 6: 15.4031 11( 8) L-x(1,2)-A-x(1,2)-G-x-[ACNSTV]-[AILV] G 7: 14.2236 11( 8) D-[AEGT]-x(3)-A-x(1,2)-D H 8: 14.1859 12( 8) G-x(3,4)-D-x(2,3)-G-x(3)-[DGN] I 9: 13.7528 14( 8) D-x(3)-G-x(1,3)-A-x-[ADQS] J 10: 13.7525 10( 8) S-x-[AGIV]-x(3)-A-x(1,3)-G K 11: 13.1400 11( 8) G-x(0,1)-L-x(3,4)-L-x(3)-[ADNSTV] L 12: 13.1400 11( 8) G-x(1,2)-L-x(3,4)-L-x(3)-[ADNSTV] M 13: 11.5102 15( 8) G-G-x(0,2)-V N 14: 11.5102 21( 8) G-x(2,3)-A-x(2,3)-L O 15: 11.5102 15( 8) G-x(2,4)-A-x(2)-L P 16: 11.5102 15( 8) G-x(1,3)-A-x(2)-L Q 17: 11.5102 10( 8) D-x(3,4)-G-x(2,3)-A R 18: 11.5102 16( 8) A-x(1,2)-D-x(4,5)-L S 19: 11.5102 13( 8) G-x(3,4)-D-x(2,3)-G T 20: 11.5102 13( 8) E-x(0,2)-G-x(2)-I Best patterns with alignements: fitness hits(seqs) Pattern A 1: 22.9676 8( 8) E-T-x(1,2)-D-x-[AT]-x-[GIV]-[AGNST]-x(2)-[CD] Occurences: 8(8) GCP_HAEIN : 7- 19: kilgi ETscDeTgVAiyD eekgl GCP_PASHA : 7- 19: rilgi ETscDeTgVAiyD edkgl QRI7_YEAST : 39- 51: kvlai ETscDdTcVSvlD rfsks Y246_MYCLE : 15- 27: iilai ETscDeTgVGiaC lddyg YGJD_ECOLI : 7- 19: rvlgi ETscDeTgIAiyD dekgl YGJD_SALTY : 7- 19: rvlgi ETscDeTgIAiyD dkkgl YHSH_HALMA : 19- 30: sasvf ETp-DpArVTddD hvfie YK18_YEAST : 218- 229: yrifg ETl-DiAiGNclD rfart B 2: 21.5436 8( 8) I-x(0,2)-E-T-x(0,2)-D-x(3)-[GIPV]-[ADGNS]-x(2)-[CDG] Occurences: 8(8) GCP_HAEIN : 6- 19: mkilg I--ETscDetgVAiyD eekgl GCP_PASHA : 6- 19: mrilg I--ETscDetgVAiyD edkgl QRI7_YEAST : 38- 51: ykvla I--ETscDdtcVSvlD rfsks Y246_MYCLE : 14- 27: tiila I--ETscDetgVGiaC lddyg YGJD_ECOLI : 6- 19: mrvlg I--ETscDetgIAiyD dekgl YGJD_SALTY : 6- 19: mrvlg I--ETscDetgIAiyD dkkgl YHSH_HALMA : 34- 45: ddhvf I--ET--DayaPDsgG ihpre YK18_YEAST : 215- 229: ekryr IfgETl-DiaiGNclD rfart C 3: 19.4949 8( 8) L-x(1,3)-T-x(2)-[DPT]-x(2)-G-x(2,4)-I-x(4)-[DEKR] Occurences: 8(8) GCP_HAEIN : 4- 22: mki LgieTscDetGva--IydeeK glian GCP_PASHA : 4- 22: mri LgieTscDetGva--IydedK glvan QRI7_YEAST : 264- 281: afita Lr--TnlTklGkte-IqelpE reirs Y246_MYCLE : 12- 30: pgtii LaieTscDetGvg--IacldD ygtvt YGJD_ECOLI : 4- 22: mrv LgieTscDetGia--IyddeK gllan YGJD_SALTY : 4- 22: mrv LgieTscDetGia--IyddkK gllan YHSH_HALMA : 162- 179: gryrv Lge-TmdTgvGna--IdkftR higws YK18_YEAST : 39- 57: skmvn Ln--TipPknGrdyyIalglE gsank D 4: 17.7869 9( 8) V-x-L-x(3,4)-G-[AG]-x-[ATV] Occurences: 9(8) GCP_HAEIN : 131- 140: phfpf VaLlvs-GGhT qlvrv GCP_PASHA : 131- 140: pefpf VaLlis-GGhT qlvkv QRI7_YEAST : 167- 176: pqfpf VsLlvs-GGhT tfvls Y246_MYCLE : 143- 152: plpec VaLlvs-GGhT hllqv YGJD_ECOLI : 33- 43: qlysq VkLhadyGGvV pelas YGJD_ECOLI : 131- 140: pefpf VaLlvc-GGhT qlisv YGJD_SALTY : 33- 43: qlysq VkLhadyGGvV p YHSH_HALMA : 140- 149: gfdsp VcLnas-GAnA hilgy YK18_YEAST : 194- 203: kaqnp VvLyvs-GGnT qviay E 5: 15.6380 9( 8) S-x(3,4)-L-x(1,2)-A-x(2)-[AGLPV]-[AEGN] Occurences: 9(8) GCP_HAEIN : 80- 91: giayt Sgpg-LvgAllVG atiar GCP_PASHA : 275- 286: maggv SankqLr-AdlAE mmkkl QRI7_YEAST : 121- 133: pgmpg SlsggLdfAkgLA vawnk Y246_MYCLE : 239- 250: aryve ShpdaLp-AdvAA gfqea YGJD_ECOLI : 31- 41: anqly Sqvk-Lh-AdyGG vvpel YGJD_ECOLI : 270- 281: maggv SanrtLr-AklAE mmkkr YGJD_SALTY : 31- 41: anqly Sqvk-Lh-AdyGG vvp YHSH_HALMA : 138- 148: rsgfd Spvc-Ln-AsgAN ahilg YK18_YEAST : 316- 327: edlcy SlqenLf-AmlVE itera F 6: 15.4031 11( 8) L-x(1,2)-A-x(1,2)-G-x-[ACNSTV]-[AILV] Occurences: 11(8) GCP_HAEIN : 35- 43: ytqia Lh-AdyGgVV pelas GCP_HAEIN : 268- 276: tgykr LviAg-GvSA nkklr GCP_PASHA : 268- 276: tgykr LvmAg-GvSA nkqlr QRI7_YEAST : 126- 134: slsgg LdfAk-GlAV awnkp Y246_MYCLE : 64- 71: asrah Le-Al-GpTI rcala YGJD_ECOLI : 35- 43: ysqvk Lh-AdyGgVV pelas YGJD_ECOLI : 89- 98: lvgal LvgAtvGrSL afawd YGJD_ECOLI : 263- 271: tgfkr LvmAg-GvSA nrtlr YGJD_SALTY : 35- 43: ysqvk Lh-AdyGgVV p YHSH_HALMA : 142- 149: dspvc Ln-As-GaNA hilgy YK18_YEAST : 220- 228: ifget LdiAi-GnCL drfar G 7: 14.2236 11( 8) D-[AEGT]-x(3)-A-x(1,2)-D Occurences: 11(8) GCP_HAEIN : 11- 19: ietsc DEtgvAiyD eekgl GCP_HAEIN : 160- 167: gesid DAageAf-D ktakl GCP_PASHA : 11- 19: ietsc DEtgvAiyD edkgl GCP_PASHA : 160- 167: gesid DAageAf-D ktgkl QRI7_YEAST : 192- 200: heilc DTidiAvgD sldkc Y246_MYCLE : 173- 180: gstvd DAageAy-D kvarl YGJD_ECOLI : 11- 19: ietsc DEtgiAiyD dekgl YGJD_ECOLI : 160- 167: gesid DAageAf-D ktakl YGJD_SALTY : 11- 19: ietsc DEtgiAiyD dkkgl YHSH_HALMA : 77- 85: gragr DGddsApiD avafa YK18_YEAST : 413- 421: qkfrt DEvyaAwrD H 8: 14.1859 12( 8) G-x(3,4)-D-x(2,3)-G-x(3)-[DGN] Occurences: 12(8) GCP_HAEIN : 14- 27: scdet GvaiyDeekGliaN qlytq GCP_HAEIN : 155- 167: kyevi GesidDaa-GeafD ktakl GCP_HAEIN : 155- 167: kyevi Gesi-DdaaGeafD ktakl GCP_PASHA : 14- 27: scdet GvaiyDedkGlvaN qlysq GCP_PASHA : 155- 167: qyell GesidDaa-GeafD ktgkl GCP_PASHA : 155- 167: qyell Gesi-DdaaGeafD ktgkl GCP_PASHA : 163- 174: iddaa Geaf-Dkt-GkllG ldypa QRI7_YEAST : 199- 210: idiav Gdsl-Dkc-GrelG fkgtm Y246_MYCLE : 168- 180: pivel GstvdDaa-GeayD kvarl Y246_MYCLE : 168- 180: pivel Gstv-DdaaGeayD kvarl YGJD_ECOLI : 14- 27: scdet GiaiyDdekGllaN qlysq YGJD_ECOLI : 155- 167: qyell GesidDaa-GeafD ktakl YGJD_ECOLI : 155- 167: qyell Gesi-DdaaGeafD ktakl YGJD_SALTY : 14- 27: scdet GiaiyDdkkGllaN qlysq YHSH_HALMA : 163- 175: ryrvl Getm-DtgvGnaiD kftrh YK18_YEAST : 217- 229: ryrif Getl-DiaiGnclD rfart I 9: 13.7528 14( 8) D-x(3)-G-x(1,3)-A-x-[ADQS] Occurences: 14(8) GCP_HAEIN : 19- 28: gvaiy DeekGli-AnQ lytqi GCP_HAEIN : 159- 167: igesi DdaaGe--AfD ktakl GCP_HAEIN : 176- 184: kllgl DypgGa--AlS rlaek GCP_PASHA : 19- 28: gvaiy DedkGlv-AnQ lysqi GCP_PASHA : 159- 167: lgesi DdaaGe--AfD ktgkl GCP_PASHA : 176- 184: kllgl DypaGv--AmS klaes QRI7_YEAST : 127- 135: lsggl DfakGl--AvA wnkpl Y246_MYCLE : 172- 180: lgstv DdaaGe--AyD kvarl Y246_MYCLE : 247- 257: dalpa DvaaGfqeAvA dvltm YGJD_ECOLI : 19- 28: giaiy DdekGll-AnQ lysqv YGJD_ECOLI : 159- 167: lgesi DdaaGe--AfD ktakl YGJD_SALTY : 19- 28: giaiy DdkkGll-AnQ lysqv YHSH_HALMA : 167- 175: lgetm DtgvGn--AiD kftrh YK18_YEAST : 363- 373: aqmck DranGqvhAtD nrfci J 10: 13.7525 10( 8) S-x-[AGIV]-x(3)-A-x(1,3)-G Occurences: 10(8) GCP_HAEIN : 71- 81: anlta SdIdgiAytsG pglvg GCP_PASHA : 31- 40: anqly SqIdmhAdy-G gvvpe GCP_PASHA : 31- 41: anqly SqIdmhAdygG vvpel GCP_PASHA : 71- 81: anlqp SdIdgiAytaG pglvg QRI7_YEAST : 123- 131: mpgsl SgGldfAk--G lavaw Y246_MYCLE : 43- 52: adeva SsVdeqArf-G gvvpe Y246_MYCLE : 43- 53: adeva SsVdeqArfgG vvpei Y246_MYCLE : 60- 68: vpeia SrAhleAl--G ptirc YGJD_ECOLI : 31- 40: anqly SqVklhAdy-G gvvpe YGJD_ECOLI : 31- 41: anqly SqVklhAdygG vvpel YGJD_SALTY : 31- 40: anqly SqVklhAdy-G gvvp YGJD_SALTY : 31- 41: anqly SqVklhAdygG vvp YHSH_HALMA : 138- 146: rsgfd SpVclnAs--G anahi YK18_YEAST : 25- 33: lregn SqAfpnAv--G skmvn K 11: 13.1400 11( 8) G-x(0,1)-L-x(3,4)-L-x(3)-[ADNSTV] Occurences: 11(8) GCP_HAEIN : 83- 92: ytsgp G-Lvga-LlvgA tiars GCP_HAEIN : 83- 93: ytsgp G-LvgalLvgaT iarsl GCP_HAEIN : 114- 125: vhhme GhLlapmLddnS phfpf GCP_PASHA : 83- 92: ytagp G-Lvga-LlvgS tiars GCP_PASHA : 83- 93: ytagp G-LvgalLvgsT iarsl GCP_PASHA : 114- 125: vhhme GhLlapmLeenA pefpf QRI7_YEAST : 91- 102: hqari GpLteraLiesN aregi Y246_MYCLE : 96- 105: atigp G-Laga-LlvgV aaaka Y246_MYCLE : 96- 106: atigp G-LagalLvgvA aakay YGJD_ECOLI : 23- 33: yddek GlLanq-LysqV klhad YGJD_ECOLI : 23- 33: yddek G-LlanqLysqV klhad YGJD_ECOLI : 83- 92: ytagp G-Lvga-LlvgA tvgrs YGJD_ECOLI : 83- 93: ytagp G-LvgalLvgaT vgrsl YGJD_SALTY : 23- 33: yddkk GlLanq-LysqV klhad YGJD_SALTY : 23- 33: yddkk G-LlanqLysqV klhad YHSH_HALMA : 94- 103: fargp G-Lgpc-LrivA taara YK18_YEAST : 276- 287: dlsms GiLasidLlakD lfkgn L 12: 13.1400 11( 8) G-x(1,2)-L-x(3,4)-L-x(3)-[ADNSTV] Occurences: 11(8) GCP_HAEIN : 81- 92: iayts GpgLvga-LlvgA tiars GCP_HAEIN : 81- 93: iayts GpgLvgalLvgaT iarsl GCP_HAEIN : 114- 125: vhhme GhlLapm-LddnS phfpf GCP_HAEIN : 114- 125: vhhme Gh-LlapmLddnS phfpf GCP_PASHA : 81- 92: iayta GpgLvga-LlvgS tiars GCP_PASHA : 81- 93: iayta GpgLvgalLvgsT iarsl GCP_PASHA : 114- 125: vhhme GhlLapm-LeenA pefpf GCP_PASHA : 114- 125: vhhme Gh-LlapmLeenA pefpf QRI7_YEAST : 91- 102: hqari Gp-LteraLiesN aregi Y246_MYCLE : 94- 105: vaati GpgLaga-LlvgV aaaka Y246_MYCLE : 94- 106: vaati GpgLagalLvgvA aakay YGJD_ECOLI : 23- 33: yddek Gl-Lanq-LysqV klhad YGJD_ECOLI : 81- 92: vayta GpgLvga-LlvgA tvgrs YGJD_ECOLI : 81- 93: vayta GpgLvgalLvgaT vgrsl YGJD_SALTY : 23- 33: yddkk Gl-Lanq-LysqV klhad YHSH_HALMA : 92- 103: vafar GpgLgpc-LrivA taara YK18_YEAST : 276- 287: dlsms Gi-LasidLlakD lfkgn M 13: 11.5102 15( 8) G-G-x(0,2)-V Occurences: 15(8) GCP_HAEIN : 40- 42: lhady GG--V vpela GCP_HAEIN : 40- 43: lhady GGv-V pelas GCP_HAEIN : 272- 274: rlvia GG--V sankk GCP_HAEIN : 292- 295: lmqnl GGe-V fypqp GCP_PASHA : 40- 42: mhady GG--V vpela GCP_PASHA : 40- 43: mhady GGv-V pelas GCP_PASHA : 272- 274: rlvma GG--V sankq QRI7_YEAST : 324- 326: efvcs GG--V ssnqr Y246_MYCLE : 52- 54: eqarf GG--V vpeia Y246_MYCLE : 52- 55: eqarf GGv-V peias Y246_MYCLE : 192- 195: glgyp GGk-V lddla Y246_MYCLE : 280- 282: tlliv GG--V aansr YGJD_ECOLI : 40- 42: lhady GG--V vpela YGJD_ECOLI : 40- 43: lhady GGv-V pelas YGJD_ECOLI : 267- 269: rlvma GG--V sanrt YGJD_SALTY : 40- 42: lhady GG--V vp YGJD_SALTY : 40- 43: lhady GGv-V p YHSH_HALMA : 187- 191: gwshp GGpkV eqhar YK18_YEAST : 345- 347: qvliv GG--V gcnvr YK18_YEAST : 395- 398: leyrm GGi-V kdfse N 14: 11.5102 21( 8) G-x(2,3)-A-x(2,3)-L Occurences: 21(8) GCP_HAEIN : 23- 29: ydeek Gli-Anq-L ytqia GCP_HAEIN : 91- 98: gallv GatiArs-L ayawn GCP_HAEIN : 114- 121: vhhme GhllApm-L ddnsp GCP_HAEIN : 179- 186: gldyp Gga-AlsrL aekgt GCP_HAEIN : 272- 280: rlvia GgvsAnkkL retla GCP_HAEIN : 273- 280: lviag Gvs-AnkkL retla GCP_PASHA : 23- 29: ydedk Glv-Anq-L ysqid GCP_PASHA : 91- 98: gallv GstiArs-L ayawn GCP_PASHA : 114- 121: vhhme GhllApm-L eenap GCP_PASHA : 272- 280: rlvma GgvsAnkqL radla GCP_PASHA : 273- 280: lvmag Gvs-AnkqL radla QRI7_YEAST : 125- 132: gslsg GldfAkg-L avawn Y246_MYCLE : 94- 101: vaati GpglAga-L lvgva Y246_MYCLE : 94- 102: vaati GpglAgalL vgvaa YGJD_ECOLI : 23- 29: yddek Gll-Anq-L ysqvk YGJD_ECOLI : 114- 121: vhhme GhllApm-L ednpp YGJD_ECOLI : 267- 275: rlvma GgvsAnrtL rakla YGJD_ECOLI : 268- 275: lvmag Gvs-AnrtL rakla YGJD_SALTY : 23- 29: yddkk Gll-Anq-L ysqvk YHSH_HALMA : 146- 152: clnas Gan-Ahi-L gyrng YK18_YEAST : 276- 283: dlsms Gil-AsidL lakdl YK18_YEAST : 381- 389: fcidn GvmiAqagL leyrm O 15: 11.5102 15( 8) G-x(2,4)-A-x(2)-L Occurences: 15(8) GCP_HAEIN : 23- 29: ydeek Gli--AnqL ytqia GCP_HAEIN : 91- 98: gallv Gati-ArsL ayawn GCP_HAEIN : 114- 121: vhhme Ghll-ApmL ddnsp GCP_PASHA : 23- 29: ydedk Glv--AnqL ysqid GCP_PASHA : 91- 98: gallv Gsti-ArsL ayawn GCP_PASHA : 114- 121: vhhme Ghll-ApmL eenap QRI7_YEAST : 124- 132: pgsls GgldfAkgL avawn QRI7_YEAST : 125- 132: gslsg Gldf-AkgL avawn Y246_MYCLE : 94- 101: vaati Gpgl-AgaL lvgva Y246_MYCLE : 213- 221: ivfpr GmtgpAddL nafsf YGJD_ECOLI : 23- 29: yddek Gll--AnqL ysqvk YGJD_ECOLI : 114- 121: vhhme Ghll-ApmL ednpp YGJD_SALTY : 23- 29: yddkk Gll--AnqL ysqvk YHSH_HALMA : 146- 152: clnas Gan--AhiL gyrng YK18_YEAST : 55- 63: yyial GlegsAnkL gvgiv P 16: 11.5102 15( 8) G-x(1,3)-A-x(2)-L Occurences: 15(8) GCP_HAEIN : 23- 29: ydeek Gli-AnqL ytqia GCP_HAEIN : 91- 98: gallv GatiArsL ayawn GCP_HAEIN : 114- 121: vhhme GhllApmL ddnsp GCP_PASHA : 23- 29: ydedk Glv-AnqL ysqid GCP_PASHA : 91- 98: gallv GstiArsL ayawn GCP_PASHA : 114- 121: vhhme GhllApmL eenap QRI7_YEAST : 125- 132: gslsg GldfAkgL avawn Y246_MYCLE : 94- 101: vaati GpglAgaL lvgva Y246_MYCLE : 96- 101: atigp Gl--AgaL lvgva Y246_MYCLE : 216- 221: prgmt Gp--AddL nafsf YGJD_ECOLI : 23- 29: yddek Gll-AnqL ysqvk YGJD_ECOLI : 114- 121: vhhme GhllApmL ednpp YGJD_SALTY : 23- 29: yddkk Gll-AnqL ysqvk YHSH_HALMA : 146- 152: clnas Gan-AhiL gyrng YK18_YEAST : 58- 63: algle Gs--AnkL gvgiv Q 17: 11.5102 10( 8) D-x(3,4)-G-x(2,3)-A Occurences: 10(8) GCP_HAEIN : 19- 26: gvaiy Deek-Gli-A nqlyt GCP_PASHA : 19- 26: gvaiy Dedk-Glv-A nqlys QRI7_YEAST : 127- 135: lsggl Dfak-GlavA wnkpl Y246_MYCLE : 198- 207: gkvld DlartGdrdA ivfpr Y246_MYCLE : 247- 255: dalpa Dvaa-GfqeA vadvl YGJD_ECOLI : 19- 26: giaiy Ddek-Gll-A nqlys YGJD_SALTY : 19- 26: giaiy Ddkk-Gll-A nqlys YHSH_HALMA : 211- 220: vvkgm DfsfsGimsA akqav YK18_YEAST : 271- 279: tvkgm DlsmsGil-A sidll YK18_YEAST : 363- 371: aqmck Dran-GqvhA tdnrf R 18: 11.5102 16( 8) A-x(1,2)-D-x(4,5)-L Occurences: 16(8) GCP_HAEIN : 16- 24: detgv AiyDeekg-L ianql GCP_HAEIN : 165- 172: daage Af-Dktak-L lgldy GCP_HAEIN : 165- 173: daage Af-DktaklL gldyp GCP_HAEIN : 205- 214: pmtdr AglDfsfsgL ktfaa GCP_HAEIN : 243- 252: adiay AfqDavvdtL aikck GCP_PASHA : 16- 24: detgv AiyDedkg-L vanql GCP_PASHA : 47- 56: vvpel AsrDhirktL pliqe GCP_PASHA : 165- 172: daage Af-Dktgk-L lgldy GCP_PASHA : 165- 173: daage Af-DktgklL gldyp QRI7_YEAST : 183- 190: fvlsr Ai-Ddhei-L cdtid Y246_MYCLE : 178- 185: daage Ay-Dkvar-L lglgy Y246_MYCLE : 178- 186: daage Ay-DkvarlL glgyp YGJD_ECOLI : 16- 24: detgi AiyDdekg-L lanql YGJD_ECOLI : 16- 25: detgi AiyDdekglL anqly YGJD_ECOLI : 165- 172: daage Af-Dktak-L lgldy YGJD_ECOLI : 165- 173: daage Af-DktaklL gldyp YGJD_ECOLI : 238- 247: adiar AfeDavvdtL mikck YGJD_SALTY : 16- 24: detgi AiyDdkkg-L lanql YGJD_SALTY : 16- 25: detgi AiyDdkkglL anqly YHSH_HALMA : 195- 203: kveqh Ar-DgeyheL pyvvk YK18_YEAST : 127- 136: ikqal AeaDiksptL didvi YK18_YEAST : 279- 288: msgil AsiDllakdL fkgnk S 19: 11.5102 13( 8) G-x(3,4)-D-x(2,3)-G Occurences: 13(8) GCP_HAEIN : 14- 23: scdet GvaiyDeekG lianq GCP_HAEIN : 155- 163: kyevi GesidDaa-G eafdk GCP_HAEIN : 155- 163: kyevi Gesi-DdaaG eafdk GCP_PASHA : 14- 23: scdet GvaiyDedkG lvanq GCP_PASHA : 155- 163: qyell GesidDaa-G eafdk GCP_PASHA : 155- 163: qyell Gesi-DdaaG eafdk GCP_PASHA : 163- 170: iddaa Geaf-Dkt-G kllgl QRI7_YEAST : 199- 206: idiav Gdsl-Dkc-G relgf Y246_MYCLE : 24- 32: detgv GiaclDdy-G tvtll Y246_MYCLE : 168- 176: pivel GstvdDaa-G eaydk Y246_MYCLE : 168- 176: pivel Gstv-DdaaG eaydk YGJD_ECOLI : 14- 23: scdet GiaiyDdekG llanq YGJD_ECOLI : 155- 163: qyell GesidDaa-G eafdk YGJD_ECOLI : 155- 163: qyell Gesi-DdaaG eafdk YGJD_SALTY : 14- 23: scdet GiaiyDdkkG llanq YHSH_HALMA : 163- 171: ryrvl Getm-DtgvG naidk YK18_YEAST : 217- 225: ryrif Getl-DiaiG ncldr T 20: 11.5102 13( 8) E-x(0,2)-G-x(2)-I Occurences: 13(8) GCP_HAEIN : 12- 17: etscd Et-GvaI ydeek GCP_HAEIN : 152- 158: gvgky EviGesI ddaag GCP_HAEIN : 229- 233: qaikn E--GelI eqtka GCP_PASHA : 12- 17: etscd Et-GvaI ydedk GCP_PASHA : 152- 158: gvgqy EllGesI ddaag QRI7_YEAST : 74- 78: ldsid E--GgiI ptkah Y246_MYCLE : 20- 25: etscd Et-GvgI acldd Y246_MYCLE : 65- 71: srahl EalGptI rcala YGJD_ECOLI : 12- 17: etscd Et-GiaI yddek YGJD_ECOLI : 152- 158: gigqy EllGesI ddaag YGJD_SALTY : 12- 17: etscd Et-GiaI yddkk YHSH_HALMA : 53- 59: preaa EhmGeaI ptvve YK18_YEAST : 182- 187: cighi Em-GreI tkaqn Number of patterns evaluated by Pratt:583 Total running time: 1 seconds