------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file GLUTR PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GLUTR.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: HEM1_ARATH 543 HEM1_BACSU 455 HEM1_CHLVI 415 HEM1_ECOLI 418 HEM1_METTH 398 HEM1_MYCLE 467 HEM1_PSEAE 388 HEM1_SALTY 418 HEM1_SYNY3 427 HEM1_XANCH 426 Pratt run started at Thu Feb 6 19:35:43 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 25.0203 10( 10) S-x(3)-G-E-x-Q-x-L-x-Q 2: 25.0203 10( 10) T-C-N-R-x-E-x-Y 3: 20.8503 10( 10) G-E-x-Q-x-L-x-Q 4: 20.8503 10( 10) C-N-R-x-E-x-Y 5: 19.3503 10( 10) V-x(2)-G-L-x(1,2)-S-x(1,3)-V 6: 16.6802 10( 10) E-x-Q-x-L-x-Q 7: 16.6802 10( 10) N-R-x-E-x-Y 8: 16.1802 10( 10) G-A-x(5)-L-x(4,5)-L 9: 16.1802 10( 10) V-x(4)-A-A-x(2,3)-L 10: 16.1802 11( 10) V-x(0,1)-G-E-x(3)-L 11: 15.6802 11( 10) S-x(3,4)-E-x(1,2)-Q-x-L 12: 15.6802 12( 10) G-E-x(3)-L-x(0,2)-V 13: 15.6802 15( 10) L-x(2,3)-V-x(1,2)-E-x(3)-L 14: 15.6802 10( 10) G-x(4,5)-V-x(1,2)-E-x(3)-L 15: 15.6802 11( 10) A-x(3,4)-S-x(4)-E-x(1,2)-Q 16: 15.1802 11( 10) S-x(2,3)-G-x(4)-L-x(1,3)-Q 17: 15.1802 12( 10) G-x(0,2)-E-x(1,2)-Q-x-L 18: 15.1802 12( 10) G-x(0,2)-E-x(2,3)-L-x-Q 19: 15.1802 12( 10) S-x(0,2)-S-x-A-x(2,3)-L 20: 15.1802 12( 10) S-x(0,2)-S-x(1,2)-A-x(2)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 48.1259 10( 10) S-x-[IV]-[ILV]-G-E-x-Q-[IV]-L-[AG]-Q-[IMV]-[KR]-x-[ASTV]-x(3)-[AGS] B 2: 38.5691 10( 10) S-x(2,3)-G-E-x-Q-[IV]-L-x-Q-[IMV]-[KR]-x-[ASTV]-x(3)-[AGS] C 3: 38.0692 10( 10) G-E-x-Q-[IV]-L-[AG]-Q-[IMV]-[KR]-x-[ASTV]-x(3)-[AGS] D 4: 37.5692 10( 10) S-x(3,4)-E-x-Q-[IV]-L-[AG]-Q-[IMV]-[KR]-x-[ASTV]-x(3)-[AGS] E 5: 33.8991 10( 10) E-x-Q-[IV]-L-[AG]-Q-[IMV]-[KR]-x-[ASTV]-x(3)-[AGS] F 6: 31.9582 11( 10) V-x(0,1)-G-E-x-[EQ]-[AIV]-L-[AG]-[AQ]-[MV] G 7: 30.2909 11( 10) A-x(3,4)-S-x-[AIV]-[AILV]-[GV]-E-x(1,2)-Q-x-[IL]-x-[QS] H 8: 30.2382 10( 10) T-C-N-R-x-E-x-Y-[ALV]-x-[APV] I 9: 30.1743 10( 10) G-E-x(2,3)-L-[AG]-Q-[IMV]-[KR]-x-[ASTV]-x(3)-[AGS] J 10: 29.8709 10( 10) G-x(4,5)-V-x(1,2)-E-x-[EGQ]-[AIV]-L-[AGQ]-[ANQ]-[MV] K 11: 26.0682 10( 10) C-N-R-x-E-x-Y-[ALV]-x-[APV] L 12: 21.9474 10( 10) V-[ASV]-x-G-L-x(1,2)-S-x(1,3)-V M 13: 21.8981 10( 10) N-R-x-E-x-Y-[ALV]-x-[APV] N 14: 20.1101 11( 10) L-x(2,3)-V-x(1,2)-E-x(2)-[AIPV]-L-x-[DNQT] O 15: 19.3505 10( 10) G-A-[GL]-x(4)-L-x(4,5)-L P 16: 18.7736 10( 10) V-x(2)-[AGS]-x-A-A-x(2,3)-L Q 17: 17.8007 12( 10) S-x(0,2)-S-x-A-x(2,3)-L-[APV] R 18: 17.8007 12( 10) S-x(0,2)-S-x(1,2)-A-x(2)-L-[APV] S 19: 15.6802 12( 10) G-E-x(3)-L-x(0,2)-V T 20: 15.1802 11( 10) S-x(2,3)-G-x(4)-L-x(1,3)-Q Best patterns with alignements: fitness hits(seqs) Pattern A 1: 48.1259 10( 10) S-x-[IV]-[ILV]-G-E-x-Q-[IV]-L-[AG]-Q-[IMV]-[KR]-x-[ASTV]-x(3)-[AGS] Occurences: 10(10) HEM1_ARATH : 203- 222: sagld SlVLGEgQILAQVKqVvkvG qgvng HEM1_BACSU : 109- 128: acgld SmVIGEtQILGQVRdSfktA qqekt HEM1_CHLVI : 109- 128: ssaid SlVLGEgQILGQVKdAyriA aevgt HEM1_ECOLI : 109- 128: asgld SlVLGEpQILGQVKkAfadS qkghm HEM1_METTH : 88- 107: asgle SmIIGEdQILGQIKaArlqA lregt HEM1_MYCLE : 109- 128: asgld SaVVGEqQVLGQVRrAyaaA eanrt HEM1_PSEAE : 73- 92: asgld SmVLGEpQILGQMKsAyavA reagt HEM1_SALTY : 109- 128: asgld SlVLGEpQILGQVKkAfadS qkghl HEM1_SYNY3 : 109- 128: aagle SlVLGEgQILAQVRtThklG qkykg HEM1_XANCH : 101- 120: atgld SmVLGEpQILGQVKdAwavA rahgt B 2: 38.5691 10( 10) S-x(2,3)-G-E-x-Q-[IV]-L-x-Q-[IMV]-[KR]-x-[ASTV]-x(3)-[AGS] Occurences: 10(10) HEM1_ARATH : 203- 222: sagld SlvlGEgQILaQVKqVvkvG qgvng HEM1_BACSU : 109- 128: acgld SmviGEtQILgQVRdSfktA qqekt HEM1_CHLVI : 109- 128: ssaid SlvlGEgQILgQVKdAyriA aevgt HEM1_ECOLI : 109- 128: asgld SlvlGEpQILgQVKkAfadS qkghm HEM1_METTH : 88- 107: asgle SmiiGEdQILgQIKaArlqA lregt HEM1_MYCLE : 109- 128: asgld SavvGEqQVLgQVRrAyaaA eanrt HEM1_PSEAE : 73- 92: asgld SmvlGEpQILgQMKsAyavA reagt HEM1_SALTY : 109- 128: asgld SlvlGEpQILgQVKkAfadS qkghl HEM1_SYNY3 : 109- 128: aagle SlvlGEgQILaQVRtThklG qkykg HEM1_XANCH : 101- 120: atgld SmvlGEpQILgQVKdAwavA rahgt C 3: 38.0692 10( 10) G-E-x-Q-[IV]-L-[AG]-Q-[IMV]-[KR]-x-[ASTV]-x(3)-[AGS] Occurences: 10(10) HEM1_ARATH : 207- 222: dslvl GEgQILAQVKqVvkvG qgvng HEM1_BACSU : 113- 128: dsmvi GEtQILGQVRdSfktA qqekt HEM1_CHLVI : 113- 128: dslvl GEgQILGQVKdAyriA aevgt HEM1_ECOLI : 113- 128: dslvl GEpQILGQVKkAfadS qkghm HEM1_METTH : 92- 107: esmii GEdQILGQIKaArlqA lregt HEM1_MYCLE : 113- 128: dsavv GEqQVLGQVRrAyaaA eanrt HEM1_PSEAE : 77- 92: dsmvl GEpQILGQMKsAyavA reagt HEM1_SALTY : 113- 128: dslvl GEpQILGQVKkAfadS qkghl HEM1_SYNY3 : 113- 128: eslvl GEgQILAQVRtThklG qkykg HEM1_XANCH : 105- 120: dsmvl GEpQILGQVKdAwavA rahgt D 4: 37.5692 10( 10) S-x(3,4)-E-x-Q-[IV]-L-[AG]-Q-[IMV]-[KR]-x-[ASTV]-x(3)-[AGS] Occurences: 10(10) HEM1_ARATH : 203- 222: sagld SlvlgEgQILAQVKqVvkvG qgvng HEM1_BACSU : 109- 128: acgld SmvigEtQILGQVRdSfktA qqekt HEM1_CHLVI : 109- 128: ssaid SlvlgEgQILGQVKdAyriA aevgt HEM1_ECOLI : 109- 128: asgld SlvlgEpQILGQVKkAfadS qkghm HEM1_METTH : 88- 107: asgle SmiigEdQILGQIKaArlqA lregt HEM1_MYCLE : 109- 128: asgld SavvgEqQVLGQVRrAyaaA eanrt HEM1_PSEAE : 73- 92: asgld SmvlgEpQILGQMKsAyavA reagt HEM1_SALTY : 109- 128: asgld SlvlgEpQILGQVKkAfadS qkghl HEM1_SYNY3 : 109- 128: aagle SlvlgEgQILAQVRtThklG qkykg HEM1_XANCH : 101- 120: atgld SmvlgEpQILGQVKdAwavA rahgt E 5: 33.8991 10( 10) E-x-Q-[IV]-L-[AG]-Q-[IMV]-[KR]-x-[ASTV]-x(3)-[AGS] Occurences: 10(10) HEM1_ARATH : 208- 222: slvlg EgQILAQVKqVvkvG qgvng HEM1_BACSU : 114- 128: smvig EtQILGQVRdSfktA qqekt HEM1_CHLVI : 114- 128: slvlg EgQILGQVKdAyriA aevgt HEM1_ECOLI : 114- 128: slvlg EpQILGQVKkAfadS qkghm HEM1_METTH : 93- 107: smiig EdQILGQIKaArlqA lregt HEM1_MYCLE : 114- 128: savvg EqQVLGQVRrAyaaA eanrt HEM1_PSEAE : 78- 92: smvlg EpQILGQMKsAyavA reagt HEM1_SALTY : 114- 128: slvlg EpQILGQVKkAfadS qkghl HEM1_SYNY3 : 114- 128: slvlg EgQILAQVRtThklG qkykg HEM1_XANCH : 106- 120: smvlg EpQILGQVKdAwavA rahgt F 6: 31.9582 11( 10) V-x(0,1)-G-E-x-[EQ]-[AIV]-L-[AG]-[AQ]-[MV] Occurences: 11(10) HEM1_ARATH : 205- 215: gldsl VlGEgQILAQV kqvvk HEM1_BACSU : 111- 121: gldsm ViGEtQILGQV rdsfk HEM1_CHLVI : 111- 121: aidsl VlGEgQILGQV kdayr HEM1_ECOLI : 111- 121: gldsl VlGEpQILGQV kkafa HEM1_METTH : 28- 37: rieei V-GElEALGAV tekvp HEM1_MYCLE : 111- 121: gldsa VvGEqQVLGQV rraya HEM1_MYCLE : 112- 121: ldsav V-GEqQVLGQV rraya HEM1_PSEAE : 75- 85: gldsm VlGEpQILGQM ksaya HEM1_SALTY : 111- 121: gldsl VlGEpQILGQV kkafa HEM1_SYNY3 : 111- 121: glesl VlGEgQILAQV rtthk HEM1_XANCH : 103- 113: gldsm VlGEpQILGQV kdawa G 7: 30.2909 11( 10) A-x(3,4)-S-x-[AIV]-[AILV]-[GV]-E-x(1,2)-Q-x-[IL]-x-[QS] Occurences: 11(10) HEM1_ARATH : 199- 214: ifevs Agld-SlVLGEg-QiLaQ vkqvv HEM1_BACSU : 104- 120: hlfrv AcgldSmVIGEt-QiLgQ vrdsf HEM1_CHLVI : 162- 178: klmeg Avsv-SyAAVElaQkIfS nlsmk HEM1_ECOLI : 104- 120: hlmrv AsgldSlVLGEp-QiLgQ vkkaf HEM1_METTH : 83- 99: hllrl AsgleSmIIGEd-QiLgQ ikaar HEM1_MYCLE : 104- 120: hlftv AsgldSaVVGEq-QvLgQ vrray HEM1_PSEAE : 68- 84: hmmrv AsgldSmVLGEp-QiLgQ mksay HEM1_SALTY : 104- 120: hlmrv AsgldSlVLGEp-QiLgQ vkkaf HEM1_SYNY3 : 104- 120: hlmrv AagleSlVLGEg-QiLaQ vrtth HEM1_SYNY3 : 105- 120: lmrva Agle-SlVLGEg-QiLaQ vrtth HEM1_XANCH : 96- 112: hlfrv AtgldSmVLGEp-QiLgQ vkdaw H 8: 30.2382 10( 10) T-C-N-R-x-E-x-Y-[ALV]-x-[APV] Occurences: 10(10) HEM1_ARATH : 143- 153: aavls TCNRmEiYVlA lsqhr HEM1_BACSU : 49- 59: niivs TCNRtEiYAvV dqlht HEM1_CHLVI : 49- 59: amvvs TCNRtElYVvP gmpev HEM1_ECOLI : 49- 59: gvvls TCNRtElYLsV eeqdn HEM1_METTH : 45- 55: kvplm TCNRvEyYLhV tgvpp HEM1_MYCLE : 49- 59: amvls TCNRvEvYAvV eafha HEM1_PSEAE : 15- 25: aails TCNRsElYLeV dhpta HEM1_SALTY : 49- 59: gvvls TCNRtElYLsV eeqdn HEM1_SYNY3 : 49- 59: vtvis TCNRlEiYAvV tdtek HEM1_XANCH : 49- 59: aalls TCNRtElYAmA eeahs I 9: 30.1743 10( 10) G-E-x(2,3)-L-[AG]-Q-[IMV]-[KR]-x-[ASTV]-x(3)-[AGS] Occurences: 10(10) HEM1_ARATH : 207- 222: dslvl GEgqiLAQVKqVvkvG qgvng HEM1_BACSU : 113- 128: dsmvi GEtqiLGQVRdSfktA qqekt HEM1_CHLVI : 113- 128: dslvl GEgqiLGQVKdAyriA aevgt HEM1_ECOLI : 113- 128: dslvl GEpqiLGQVKkAfadS qkghm HEM1_METTH : 92- 107: esmii GEdqiLGQIKaArlqA lregt HEM1_MYCLE : 113- 128: dsavv GEqqvLGQVRrAyaaA eanrt HEM1_PSEAE : 77- 92: dsmvl GEpqiLGQMKsAyavA reagt HEM1_SALTY : 113- 128: dslvl GEpqiLGQVKkAfadS qkghl HEM1_SYNY3 : 113- 128: eslvl GEgqiLAQVRtThklG qkykg HEM1_XANCH : 105- 120: dsmvl GEpqiLGQVKdAwavA rahgt J 10: 29.8709 10( 10) G-x(4,5)-V-x(1,2)-E-x-[EGQ]-[AIV]-L-[AGQ]-[ANQ]-[MV] Occurences: 10(10) HEM1_ARATH : 200- 215: fevsa Gldsl-VlgEgQILAQV kqvvk HEM1_BACSU : 106- 121: frvac Gldsm-VigEtQILGQV rdsfk HEM1_CHLVI : 279- 294: iildl Glprn-VdpEvGALQNM flkdi HEM1_ECOLI : 106- 121: mrvas Gldsl-VlgEpQILGQV kkafa HEM1_METTH : 22- 37: metas GrieeiVg-ElEALGAV tekvp HEM1_MYCLE : 106- 121: ftvas GldsavVg-EqQVLGQV rraya HEM1_MYCLE : 106- 121: ftvas Gldsa-VvgEqQVLGQV rraya HEM1_PSEAE : 70- 85: mrvas Gldsm-VlgEpQILGQM ksaya HEM1_SALTY : 106- 121: mrvas Gldsl-VlgEpQILGQV kkafa HEM1_SYNY3 : 106- 121: mrvaa Glesl-VlgEgQILAQV rtthk HEM1_XANCH : 98- 113: frvat Gldsm-VlgEpQILGQV kdawa K 11: 26.0682 10( 10) C-N-R-x-E-x-Y-[ALV]-x-[APV] Occurences: 10(10) HEM1_ARATH : 144- 153: avlst CNRmEiYVlA lsqhr HEM1_BACSU : 50- 59: iivst CNRtEiYAvV dqlht HEM1_CHLVI : 50- 59: mvvst CNRtElYVvP gmpev HEM1_ECOLI : 50- 59: vvlst CNRtElYLsV eeqdn HEM1_METTH : 46- 55: vplmt CNRvEyYLhV tgvpp HEM1_MYCLE : 50- 59: mvlst CNRvEvYAvV eafha HEM1_PSEAE : 16- 25: ailst CNRsElYLeV dhpta HEM1_SALTY : 50- 59: vvlst CNRtElYLsV eeqdn HEM1_SYNY3 : 50- 59: tvist CNRlEiYAvV tdtek HEM1_XANCH : 50- 59: allst CNRtElYAmA eeahs L 12: 21.9474 10( 10) V-[ASV]-x-G-L-x(1,2)-S-x(1,3)-V Occurences: 10(10) HEM1_ARATH : 197- 205: qhife VSaGLd-Sl--V lgegq HEM1_BACSU : 103- 111: ehlfr VAcGLd-Sm--V igetq HEM1_CHLVI : 36- 46: fvtdl VSsGLa-SeamV vstcn HEM1_ECOLI : 103- 111: shlmr VAsGLd-Sl--V lgepq HEM1_METTH : 354- 363: kdper VVeGLtrSi--V dkifh HEM1_MYCLE : 103- 111: ehlft VAsGLd-Sa--V vgeqq HEM1_MYCLE : 103- 112: ehlft VAsGLd-Sav-V geqqv HEM1_PSEAE : 67- 75: rhmmr VAsGLd-Sm--V lgepq HEM1_SALTY : 103- 111: shlmr VAsGLd-Sl--V lgepq HEM1_SYNY3 : 103- 111: rhlmr VAaGLe-Sl--V lgegq HEM1_XANCH : 95- 103: rhlfr VAtGLd-Sm--V lgepq M 13: 21.8981 10( 10) N-R-x-E-x-Y-[ALV]-x-[APV] Occurences: 10(10) HEM1_ARATH : 145- 153: vlstc NRmEiYVlA lsqhr HEM1_BACSU : 51- 59: ivstc NRtEiYAvV dqlht HEM1_CHLVI : 51- 59: vvstc NRtElYVvP gmpev HEM1_ECOLI : 51- 59: vlstc NRtElYLsV eeqdn HEM1_METTH : 47- 55: plmtc NRvEyYLhV tgvpp HEM1_MYCLE : 51- 59: vlstc NRvEvYAvV eafha HEM1_PSEAE : 17- 25: ilstc NRsElYLeV dhpta HEM1_SALTY : 51- 59: vlstc NRtElYLsV eeqdn HEM1_SYNY3 : 51- 59: vistc NRlEiYAvV tdtek HEM1_XANCH : 51- 59: llstc NRtElYAmA eeahs N 14: 20.1101 11( 10) L-x(2,3)-V-x(1,2)-E-x(2)-[AIPV]-L-x-[DNQT] Occurences: 11(10) HEM1_ARATH : 201- 214: evsag LdslVlgEgqILaQ vkqvv HEM1_BACSU : 107- 120: rvacg LdsmVigEtqILgQ vrdsf HEM1_CHLVI : 280- 293: ildlg LprnVdpEvgALqN mflkd HEM1_ECOLI : 107- 120: rvasg LdslVlgEpqILgQ vkkaf HEM1_ECOLI : 222- 235: eraqi LadeVgaEviALsD iderl HEM1_METTH : 34- 45: gelea Lga-Vt-EkvPLmT cnrve HEM1_MYCLE : 107- 120: tvasg LdsaVvgEqqVLgQ vrray HEM1_PSEAE : 71- 84: rvasg LdsmVlgEpqILgQ mksay HEM1_SALTY : 107- 120: rvasg LdslVlgEpqILgQ vkkaf HEM1_SYNY3 : 107- 120: rvaag LeslVlgEgqILaQ vrtth HEM1_XANCH : 99- 112: rvatg LdsmVlgEpqILgQ vkdaw O 15: 19.3505 10( 10) G-A-[GL]-x(4)-L-x(4,5)-L Occurences: 10(10) HEM1_ARATH : 285- 297: rmcvi GAGkmglLvikh-L makgc HEM1_BACSU : 189- 201: hilil GAGkmgeLaaen-L hgqgi HEM1_CHLVI : 289- 302: vdpev GALqnmfLkdidaL khiid HEM1_ECOLI : 189- 201: tvllv GAGetieLvarh-L rehkv HEM1_METTH : 168- 180: kvlvi GAGkmgtLvara-L aekhl HEM1_MYCLE : 189- 201: iavvi GAGamgaLsssy-L tqanv HEM1_PSEAE : 153- 165: qalli GAGetitLvarh-L feqgv HEM1_SALTY : 189- 201: tvllv GAGetieLvarh-L rehkv HEM1_SYNY3 : 188- 200: ktvii GAGkmacLlvkh-L lakga HEM1_SYNY3 : 188- 201: ktvii GAGkmacLlvkhlL akgat HEM1_XANCH : 181- 193: tvlli GAGetieLaakh-L segrv P 16: 18.7736 10( 10) V-x(2)-[AGS]-x-A-A-x(2,3)-L Occurences: 10(10) HEM1_ARATH : 257- 266: iasga VsvSsAAve-L almkl HEM1_BACSU : 163- 172: igsna VsvSyAAve-L akkif HEM1_CHLVI : 163- 172: lmega VsvSyAAve-L aqkif HEM1_ECOLI : 163- 172: igasa VsvAfAAct-L arqif HEM1_METTH : 142- 151: inrgs VsiGsAAvd-L aesih HEM1_MYCLE : 90- 100: tkyay VrySeAAvehL ftvas HEM1_PSEAE : 127- 136: igenp VsvAfAAvs-L akqif HEM1_SALTY : 163- 172: igasa VsvAfAAct-L arqif HEM1_SYNY3 : 163- 172: igtga VsiSsAAve-L vhrqv HEM1_XANCH : 238- 248: aeadv VfsAtAArepL vtraq Q 17: 17.8007 12( 10) S-x(0,2)-S-x-A-x(2,3)-L-[APV] Occurences: 12(10) HEM1_ARATH : 258- 267: asgav SvsSaAve-LA lmklp HEM1_ARATH : 258- 267: asgav Sv-SsAaveLA lmklp HEM1_ARATH : 260- 267: gavsv S--SaAve-LA lmklp HEM1_BACSU : 164- 173: gsnav Sv-SyAaveLA kkifg HEM1_CHLVI : 164- 173: megav Sv-SyAaveLA qkifs HEM1_ECOLI : 248- 255: adiii S--StAsp-LP iigkg HEM1_METTH : 143- 152: nrgsv SigSaAvd-LA esihg HEM1_MYCLE : 215- 223: hvlnr Sl-SrArr-LA gkige HEM1_PSEAE : 212- 219: sdivi S--StAsq-LP ilgkg HEM1_SALTY : 248- 255: adiii S--StAsp-LP iigkg HEM1_SYNY3 : 164- 173: gtgav SisSaAve-LV hrqvd HEM1_SYNY3 : 164- 173: gtgav Si-SsAaveLV hrqvd HEM1_SYNY3 : 166- 173: gavsi S--SaAve-LV hrqvd HEM1_XANCH : 156- 165: ganpv SvaStAvr-LA qdsfa R 18: 17.8007 12( 10) S-x(0,2)-S-x(1,2)-A-x(2)-L-[APV] Occurences: 12(10) HEM1_ARATH : 258- 267: asgav SvsSa-AveLA lmklp HEM1_ARATH : 258- 267: asgav Sv-SsaAveLA lmklp HEM1_ARATH : 260- 267: gavsv S--Sa-AveLA lmklp HEM1_BACSU : 164- 173: gsnav Sv-SyaAveLA kkifg HEM1_CHLVI : 164- 173: megav Sv-SyaAveLA qkifs HEM1_ECOLI : 248- 255: adiii S--St-AspLP iigkg HEM1_METTH : 143- 152: nrgsv SigSa-AvdLA esihg HEM1_MYCLE : 215- 223: hvlnr Sl-Sr-ArrLA gkige HEM1_PSEAE : 212- 219: sdivi S--St-AsqLP ilgkg HEM1_SALTY : 248- 255: adiii S--St-AspLP iigkg HEM1_SYNY3 : 164- 173: gtgav SisSa-AveLV hrqvd HEM1_SYNY3 : 164- 173: gtgav Si-SsaAveLV hrqvd HEM1_SYNY3 : 166- 173: gavsi S--Sa-AveLV hrqvd HEM1_XANCH : 156- 165: ganpv SvaSt-AvrLA qdsfa S 19: 15.6802 12( 10) G-E-x(3)-L-x(0,2)-V Occurences: 12(10) HEM1_ARATH : 207- 215: dslvl GEgqiLaqV kqvvk HEM1_BACSU : 113- 121: dsmvi GEtqiLgqV rdsfk HEM1_CHLVI : 113- 121: dslvl GEgqiLgqV kdayr HEM1_ECOLI : 113- 121: dslvl GEpqiLgqV kkafa HEM1_ECOLI : 191- 197: llvga GEtieL--V arhlr HEM1_METTH : 29- 37: ieeiv GEleaLgaV tekvp HEM1_MYCLE : 113- 121: dsavv GEqqvLgqV rraya HEM1_PSEAE : 155- 161: lliga GEtitL--V arhlf HEM1_SALTY : 113- 121: dslvl GEpqiLgqV kkafa HEM1_SALTY : 191- 197: llvga GEtieL--V arhlr HEM1_SYNY3 : 113- 121: eslvl GEgqiLaqV rtthk HEM1_XANCH : 105- 113: dsmvl GEpqiLgqV kdawa T 20: 15.1802 11( 10) S-x(2,3)-G-x(4)-L-x(1,3)-Q Occurences: 11(10) HEM1_ARATH : 203- 214: sagld SlvlGegqiLa--Q vkqvv HEM1_BACSU : 109- 120: acgld SmviGetqiLg--Q vrdsf HEM1_CHLVI : 109- 120: ssaid SlvlGegqiLg--Q vkday HEM1_ECOLI : 109- 120: asgld SlvlGepqiLg--Q vkkaf HEM1_METTH : 88- 99: asgle SmiiGedqiLg--Q ikaar HEM1_MYCLE : 109- 120: asgld SavvGeqqvLg--Q vrray HEM1_PSEAE : 73- 84: asgld SmvlGepqiLg--Q mksay HEM1_PSEAE : 364- 376: qmkkm Sae-GridaLalaQ elfal HEM1_SALTY : 109- 120: asgld SlvlGepqiLg--Q vkkaf HEM1_SYNY3 : 109- 120: aagle SlvlGegqiLa--Q vrtth HEM1_XANCH : 101- 112: atgld SmvlGepqiLg--Q vkdaw Number of patterns evaluated by Pratt:11219 Total running time: 8 seconds