------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 26 sequences from file GLUTATHIONE_PEROXID_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 26 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GLUTATHIONE_PEROXID_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: BTUE_ECOLI 183 GSHC_BOVIN 205 GSHC_HUMAN 201 GSHC_MOUSE 201 GSHC_RABIT 200 GSHC_RAT 201 GSHC_SCHMA 169 GSHE_MACFA 221 GSHE_MOUSE 221 GSHE_RAT 221 GSHG_HUMAN 190 GSHH_HUMAN 170 GSHH_PIG 170 GSHH_RAT 170 GSHH_YEAST 167 GSHI_YEAST 162 GSHJ_YEAST 163 GSHP_BOVIN 226 GSHP_HUMAN 226 GSHP_MOUSE 226 GSHP_RAT 226 GSHU_BRUMA 223 GSHU_WUCBA 223 GSHX_HUMAN 122 GSHZ_CITSI 167 GSHZ_NICSY 169 Pratt run started at Thu Feb 6 19:35:42 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.6802 26( 26) P-x(2)-Q-F-x(2)-Q 2: 16.6802 26( 26) F-x(3)-Q-F-x(2)-Q 3: 16.1802 26( 26) N-V-x(3)-C-x(1,2)-T 4: 15.6802 26( 26) F-x(1,2)-N-Q-x(0,1)-F 5: 12.5102 26( 26) Q-F-x(2)-Q 6: 12.5102 26( 26) F-P-x-N 7: 12.0102 27( 26) N-Q-x(0,1)-F 8: 12.0102 26( 26) N-x-F-x(1,2)-Q 9: 12.0102 43( 26) G-x(5)-F-x(2,3)-Q 10: 12.0102 26( 26) V-x(3)-C-x(1,2)-T 11: 11.0102 47( 26) F-x(2,3)-Q-x(1,3)-G 12: 11.0102 29( 26) V-x(0,2)-V-x(3,4)-C 13: 11.0102 34( 26) L-x(0,1)-K-x(2,4)-G 14: 11.0102 39( 26) L-x(2,3)-N-x(0,2)-V 15: 10.5102 28( 26) P-x(1,3)-N-x(1,3)-F 16: 10.5102 39( 26) K-x(1,3)-L-x(3,5)-G 17: 10.5102 34( 26) N-x(2,4)-K-x(1,3)-L 18: 8.3401 44( 26) L-V 19: 8.3401 52( 26) L-x(2)-P 20: 8.3401 32( 26) G-x(4)-R Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 27.3839 26( 26) F-P-[CS]-[GN]-Q-F-x(2)-Q B 2: 23.2138 26( 26) P-[CS]-[GN]-Q-F-x(2)-Q C 3: 20.6175 39( 26) G-[FL]-x(3)-[AGQ]-F-x(2,3)-Q-x-[GNP] D 4: 19.0100 26( 26) F-P-x-N-[QS]-[FL] E 5: 18.8576 26( 26) F-x(1,2)-N-Q-x(0,1)-F-x(2)-[DQ] F 6: 18.8257 26( 26) N-V-x-[CST]-x-C-x(1,2)-T G 7: 15.3572 27( 26) N-x(2,4)-K-x(1,3)-L-[FIV]-[ADGV] H 8: 15.1876 26( 26) N-Q-x(0,1)-F-x(2)-[DQ] I 9: 14.6556 26( 26) V-x-[CST]-x-C-x(1,2)-T J 10: 14.1803 36( 26) L-x(2,3)-N-x(0,2)-V-x(4)-[AG] K 11: 13.6721 28( 26) V-x(0,2)-V-x(3,4)-C-[AGN] L 12: 13.6007 41( 26) F-x(2,3)-Q-x(1,3)-G-x-[DNQ] M 13: 13.1357 26( 26) P-x(1,3)-N-x(1,3)-F-[GLP] N 14: 12.5102 26( 26) Q-F-x(2)-Q O 15: 12.0102 26( 26) N-x-F-x(1,2)-Q P 16: 11.0102 34( 26) L-x(0,1)-K-x(2,4)-G Q 17: 10.5102 39( 26) K-x(1,3)-L-x(3,5)-G R 18: 10.2506 48( 26) L-x(2)-P-x-[DEGNS] S 19: 8.3401 44( 26) L-V T 20: 8.3401 52( 26) L-x(2)-P Best patterns with alignements: fitness hits(seqs) Pattern A 1: 27.3839 26( 26) F-P-[CS]-[GN]-Q-F-x(2)-Q Occurences: 26(26) BTUE_ECOLI : 63- 71: fmvlg FPCNQFleQ epgsd GSHC_BOVIN : 79- 87: lvvlg FPCNQFghQ enakn GSHC_HUMAN : 74- 82: lvvlg FPCNQFghQ enakn GSHC_MOUSE : 74- 82: lvvlg FPCNQFghQ engkn GSHC_RABIT : 73- 81: lvvlg FPCNQFghQ enakn GSHC_RAT : 74- 82: lvvlg FPCNQFghQ engkn GSHC_SCHMA : 70- 78: lrila FPCNQFggQ epwae GSHE_MACFA : 99- 107: lvvlg FPCNQFgkQ epgdn GSHE_MOUSE : 99- 107: lvilg FPCNQFgkQ epgdn GSHE_RAT : 99- 107: lvilg FPCNQFgkQ epgdn GSHG_HUMAN : 66- 74: lvvlg FPCNQFghQ encqn GSHH_HUMAN : 73- 81: lrila FPCNQFgkQ epgsn GSHH_PIG : 73- 81: lrila FPCNQFgrQ epgsd GSHH_RAT : 73- 81: lrila FPCNQFgrQ epgsn GSHH_YEAST : 62- 70: lviva FPCGQFgnQ efekd GSHI_YEAST : 63- 71: fvilg FPCNQFgkQ epgsd GSHJ_YEAST : 62- 70: ftiig FPCNQFghQ epgsd GSHP_BOVIN : 99- 107: lvilg FPCNQFgkQ epgen GSHP_HUMAN : 99- 107: lvilg FPCNQFgkQ epgen GSHP_MOUSE : 99- 107: lvilg FPSNQFgkQ epgen GSHP_RAT : 99- 107: lvilg FPCNQFgkQ epgen GSHU_BRUMA : 100- 108: lnilg FPCNQFylQ epaen GSHU_WUCBA : 100- 108: lnilg FPCNQFylQ epaen GSHX_HUMAN : 71- 79: lvvlg FPCNQFghQ vygar GSHZ_CITSI : 68- 76: leila FPCNQFgaQ epgdn GSHZ_NICSY : 70- 78: leila FPCNQFggQ epgsi B 2: 23.2138 26( 26) P-[CS]-[GN]-Q-F-x(2)-Q Occurences: 26(26) BTUE_ECOLI : 64- 71: mvlgf PCNQFleQ epgsd GSHC_BOVIN : 80- 87: vvlgf PCNQFghQ enakn GSHC_HUMAN : 75- 82: vvlgf PCNQFghQ enakn GSHC_MOUSE : 75- 82: vvlgf PCNQFghQ engkn GSHC_RABIT : 74- 81: vvlgf PCNQFghQ enakn GSHC_RAT : 75- 82: vvlgf PCNQFghQ engkn GSHC_SCHMA : 71- 78: rilaf PCNQFggQ epwae GSHE_MACFA : 100- 107: vvlgf PCNQFgkQ epgdn GSHE_MOUSE : 100- 107: vilgf PCNQFgkQ epgdn GSHE_RAT : 100- 107: vilgf PCNQFgkQ epgdn GSHG_HUMAN : 67- 74: vvlgf PCNQFghQ encqn GSHH_HUMAN : 74- 81: rilaf PCNQFgkQ epgsn GSHH_PIG : 74- 81: rilaf PCNQFgrQ epgsd GSHH_RAT : 74- 81: rilaf PCNQFgrQ epgsn GSHH_YEAST : 63- 70: vivaf PCGQFgnQ efekd GSHI_YEAST : 64- 71: vilgf PCNQFgkQ epgsd GSHJ_YEAST : 63- 70: tiigf PCNQFghQ epgsd GSHP_BOVIN : 100- 107: vilgf PCNQFgkQ epgen GSHP_HUMAN : 100- 107: vilgf PCNQFgkQ epgen GSHP_MOUSE : 100- 107: vilgf PSNQFgkQ epgen GSHP_RAT : 100- 107: vilgf PCNQFgkQ epgen GSHU_BRUMA : 101- 108: nilgf PCNQFylQ epaen GSHU_WUCBA : 101- 108: nilgf PCNQFylQ epaen GSHX_HUMAN : 72- 79: vvlgf PCNQFghQ vygar GSHZ_CITSI : 69- 76: eilaf PCNQFgaQ epgdn GSHZ_NICSY : 71- 78: eilaf PCNQFggQ epgsi C 3: 20.6175 39( 26) G-[FL]-x(3)-[AGQ]-F-x(2,3)-Q-x-[GNP] Occurences: 39(26) BTUE_ECOLI : 62- 73: gfmvl GFpcnQFle-QeP gsdee GSHC_BOVIN : 73- 85: rlgpr GLvvlGFpcnQfG hqena GSHC_BOVIN : 78- 89: glvvl GFpcnQFgh-QeN aknee GSHC_HUMAN : 68- 80: rlgpr GLvvlGFpcnQfG hqena GSHC_HUMAN : 73- 84: glvvl GFpcnQFgh-QeN aknee GSHC_MOUSE : 68- 80: rlgpr GLvvlGFpcnQfG hqeng GSHC_MOUSE : 73- 84: glvvl GFpcnQFgh-QeN gknee GSHC_RABIT : 72- 83: alvvl GFpcnQFgh-QeN aknee GSHC_RAT : 68- 80: rlgpr GLvvlGFpcnQfG hqeng GSHC_RAT : 73- 84: glvvl GFpcnQFgh-QeN gknee GSHC_SCHMA : 64- 76: rlvgk GLrilAFpcnQfG gqepw GSHE_MACFA : 93- 105: elkpy GLvvlGFpcnQfG kqepg GSHE_MACFA : 98- 109: glvvl GFpcnQFgk-QeP gdnke GSHE_MOUSE : 93- 105: dlkpf GLvilGFpcnQfG kqepg GSHE_MOUSE : 98- 109: glvil GFpcnQFgk-QeP gdnle GSHE_RAT : 93- 105: dlkqf GLvilGFpcnQfG kqepg GSHE_RAT : 98- 109: glvil GFpcnQFgk-QeP gdnte GSHG_HUMAN : 65- 76: rlvvl GFpcnQFgh-QeN cqnee GSHH_HUMAN : 67- 79: ryaec GLrilAFpcnQfG kqepg GSHH_PIG : 67- 79: ryaec GLrilAFpcnQfG rqepg GSHH_RAT : 67- 79: ryaec GLrilAFpcnQfG rqepg GSHH_YEAST : 56- 68: kyksh GLvivAFpcgQfG nqefe GSHI_YEAST : 57- 69: kyqdk GFvilGFpcnQfG kqepg GSHI_YEAST : 62- 73: gfvil GFpcnQFgk-QeP gsdeq GSHJ_YEAST : 56- 68: rykde GFtiiGFpcnQfG hqepg GSHJ_YEAST : 61- 72: gftii GFpcnQFgh-QeP gsdee GSHP_BOVIN : 93- 105: elepf GLvilGFpcnQfG kqepg GSHP_BOVIN : 98- 109: glvil GFpcnQFgk-QeP gense GSHP_HUMAN : 93- 105: elapf GLvilGFpcnQfG kqepg GSHP_HUMAN : 98- 109: glvil GFpcnQFgk-QeP gense GSHP_MOUSE : 93- 105: elgpf GLvilGFpsnQfG kqepg GSHP_MOUSE : 98- 109: glvil GFpsnQFgk-QeP gense GSHP_RAT : 93- 105: elgpf GLvilGFpcnQfG kqepg GSHP_RAT : 98- 109: glvil GFpcnQFgk-QeP gense GSHU_BRUMA : 99- 110: tlnil GFpcnQFyl-QeP aenhe GSHU_WUCBA : 99- 110: tlnil GFpcnQFyl-QeP aenhe GSHX_HUMAN : 65- 77: lqkrl GLvvlGFpcnQfG hqvyg GSHZ_CITSI : 62- 74: kyknq GLeilAFpcnQfG aqepg GSHZ_NICSY : 64- 76: kykdq GLeilAFpcnQfG gqepg D 4: 19.0100 26( 26) F-P-x-N-[QS]-[FL] Occurences: 26(26) BTUE_ECOLI : 63- 68: fmvlg FPcNQF leqep GSHC_BOVIN : 79- 84: lvvlg FPcNQF ghqen GSHC_HUMAN : 74- 79: lvvlg FPcNQF ghqen GSHC_MOUSE : 74- 79: lvvlg FPcNQF ghqen GSHC_RABIT : 73- 78: lvvlg FPcNQF ghqen GSHC_RAT : 74- 79: lvvlg FPcNQF ghqen GSHC_SCHMA : 70- 75: lrila FPcNQF ggqep GSHE_MACFA : 99- 104: lvvlg FPcNQF gkqep GSHE_MOUSE : 99- 104: lvilg FPcNQF gkqep GSHE_RAT : 99- 104: lvilg FPcNQF gkqep GSHG_HUMAN : 66- 71: lvvlg FPcNQF ghqen GSHH_HUMAN : 73- 78: lrila FPcNQF gkqep GSHH_PIG : 73- 78: lrila FPcNQF grqep GSHH_RAT : 73- 78: lrila FPcNQF grqep GSHH_YEAST : 17- 22: engnp FPfNSL rnkvv GSHI_YEAST : 63- 68: fvilg FPcNQF gkqep GSHJ_YEAST : 62- 67: ftiig FPcNQF ghqep GSHP_BOVIN : 99- 104: lvilg FPcNQF gkqep GSHP_HUMAN : 99- 104: lvilg FPcNQF gkqep GSHP_MOUSE : 99- 104: lvilg FPsNQF gkqep GSHP_RAT : 99- 104: lvilg FPcNQF gkqep GSHU_BRUMA : 100- 105: lnilg FPcNQF ylqep GSHU_WUCBA : 100- 105: lnilg FPcNQF ylqep GSHX_HUMAN : 71- 76: lvvlg FPcNQF ghqvy GSHZ_CITSI : 68- 73: leila FPcNQF gaqep GSHZ_NICSY : 70- 75: leila FPcNQF ggqep E 5: 18.8576 26( 26) F-x(1,2)-N-Q-x(0,1)-F-x(2)-[DQ] Occurences: 26(26) BTUE_ECOLI : 63- 71: fmvlg FpcNQ-FleQ epgsd GSHC_BOVIN : 79- 87: lvvlg FpcNQ-FghQ enakn GSHC_HUMAN : 74- 82: lvvlg FpcNQ-FghQ enakn GSHC_MOUSE : 74- 82: lvvlg FpcNQ-FghQ engkn GSHC_RABIT : 73- 81: lvvlg FpcNQ-FghQ enakn GSHC_RAT : 74- 82: lvvlg FpcNQ-FghQ engkn GSHC_SCHMA : 70- 78: lrila FpcNQ-FggQ epwae GSHE_MACFA : 99- 107: lvvlg FpcNQ-FgkQ epgdn GSHE_MOUSE : 99- 107: lvilg FpcNQ-FgkQ epgdn GSHE_RAT : 99- 107: lvilg FpcNQ-FgkQ epgdn GSHG_HUMAN : 66- 74: lvvlg FpcNQ-FghQ encqn GSHH_HUMAN : 73- 81: lrila FpcNQ-FgkQ epgsn GSHH_PIG : 73- 81: lrila FpcNQ-FgrQ epgsd GSHH_RAT : 73- 81: lrila FpcNQ-FgrQ epgsn GSHH_YEAST : 67- 75: fpcgq Fg-NQeFekD keink GSHI_YEAST : 63- 71: fvilg FpcNQ-FgkQ epgsd GSHJ_YEAST : 62- 70: ftiig FpcNQ-FghQ epgsd GSHP_BOVIN : 99- 107: lvilg FpcNQ-FgkQ epgen GSHP_HUMAN : 99- 107: lvilg FpcNQ-FgkQ epgen GSHP_MOUSE : 99- 107: lvilg FpsNQ-FgkQ epgen GSHP_RAT : 99- 107: lvilg FpcNQ-FgkQ epgen GSHU_BRUMA : 100- 108: lnilg FpcNQ-FylQ epaen GSHU_WUCBA : 100- 108: lnilg FpcNQ-FylQ epaen GSHX_HUMAN : 71- 79: lvvlg FpcNQ-FghQ vygar GSHZ_CITSI : 68- 76: leila FpcNQ-FgaQ epgdn GSHZ_NICSY : 70- 78: leila FpcNQ-FggQ epgsi F 6: 18.8257 26( 26) N-V-x-[CST]-x-C-x(1,2)-T Occurences: 26(26) BTUE_ECOLI : 32- 40: vlliv NVaSkCglT pqyeq GSHC_BOVIN : 47- 54: vllie NVaSlCg-T tvrdy GSHC_BOVIN : 47- 55: vllie NVaSlCgtT vrdyt GSHC_HUMAN : 42- 49: vllie NVaSlCg-T tvrdy GSHC_HUMAN : 42- 50: vllie NVaSlCgtT vrdyt GSHC_MOUSE : 42- 49: vllie NVaSlCg-T tirdy GSHC_MOUSE : 42- 50: vllie NVaSlCgtT irdyt GSHC_RABIT : 41- 48: vllie NVaSlCg-T tvrdy GSHC_RABIT : 41- 49: vllie NVaSlCgtT vrdyt GSHC_RAT : 42- 49: vllie NVaSlCg-T ttrdy GSHC_RAT : 42- 50: vllie NVaSlCgtT trdyt GSHC_SCHMA : 38- 46: vcliv NVaCkCgaT dknyr GSHE_MACFA : 68- 76: hilfv NVaTyCglT aqype GSHE_MOUSE : 68- 76: hvlfv NVaTyCglT iqype GSHE_RAT : 68- 76: hvlfv NVaTyCglT iqype GSHG_HUMAN : 35- 42: avlie NVrSlCg-T ttrdf GSHG_HUMAN : 35- 43: avlie NVrSlCgtT trdft GSHH_HUMAN : 41- 49: vcivt NVaSqCgkT evnyt GSHH_PIG : 41- 49: vcivt NVaSqCgkT evnyt GSHH_RAT : 41- 49: vcivt NVaSqCgkT dvnyt GSHH_YEAST : 31- 39: vvliv NVaShCafT pqyke GSHI_YEAST : 32- 40: vvliv NVaSkCgfT pqyke GSHJ_YEAST : 31- 39: vvliv NVaSkCgfT pqyke GSHP_BOVIN : 68- 76: yilfv NVaSyCglT gqyve GSHP_HUMAN : 68- 76: yvlfv NVaSyCglT gqyie GSHP_MOUSE : 68- 76: yilfv NVaSyCglT dqyle GSHP_RAT : 68- 76: yilfv NVaSyCglT dqyle GSHU_BRUMA : 69- 77: vlliv NVaTyCayT mqyrd GSHU_WUCBA : 69- 77: vlliv NVaTyCayT mqyrd GSHX_HUMAN : 42- 49: vllie NVaSlCg-T tirdy GSHX_HUMAN : 42- 50: vllie NVaSlCgtT irdyt GSHZ_CITSI : 36- 44: llliv NVaSqCglT nsnyt GSHZ_NICSY : 38- 46: vliiv NVaSqCglT nsnyt G 7: 15.3572 27( 26) N-x(2,4)-K-x(1,3)-L-[FIV]-[ADGV] Occurences: 27(26) BTUE_ECOLI : 146- 153: ddilw Nfe--Kf--LVG rdgkv GSHC_BOVIN : 121- 130: ekcev Nge--KahpLFA flrev GSHC_BOVIN : 166- 173: ndvsw Nfe--Kf--LVG pdgvp GSHC_HUMAN : 161- 168: ndvaw Nfe--Kf--LVG pdgvp GSHC_MOUSE : 161- 168: ndiaw Nfe--Kf--LVG pdgvp GSHC_RABIT : 115- 124: qkcev Nga--KaspLFA flrea GSHC_RAT : 161- 168: ndisw Nfe--Kf--LVG pdgvp GSHC_SCHMA : 133- 140: nnikw Nfs--Kf--LVD rqgqp GSHE_MACFA : 182- 189: hdirw Nfe--Kf--LVG pdgip GSHE_MOUSE : 182- 189: hdirw Nfe--Kf--LVG pdgvp GSHE_RAT : 182- 189: hdirw Nfe--Kf--LVG pngvp GSHG_HUMAN : 153- 160: sdvaw Nfe--Kf--LIG pegep GSHH_HUMAN : 137- 144: naikw Nft--Kf--LID kngcv GSHH_PIG : 137- 144: naikw Nft--Kf--LID kngcv GSHH_RAT : 137- 144: naikw Nft--Kf--LID kngcv GSHH_YEAST : 20- 30: npfpf NslrnKvv-LIV nvash GSHI_YEAST : 127- 134: kgikw Nfe--Kf--LVD sngkv GSHJ_YEAST : 126- 133: rgikw Nfe--Kf--LVD kkgkv GSHP_BOVIN : 182- 189: hdirw Nfe--Kf--LVG pdgip GSHP_HUMAN : 182- 189: hdirw Nfe--Kf--LVG pdgip GSHP_MOUSE : 182- 189: hdirw Nfe--Kf--LVG pdgip GSHP_RAT : 182- 189: hdirw Nfe--Kf--LVG pdgip GSHU_BRUMA : 185- 192: ndviw Nfe--Kf--LVD kkgrp GSHU_WUCBA : 185- 192: ndviw Nfe--Kf--LVD kkgrp GSHX_HUMAN : 58- 68: dytem Ndlq-KrlgLVV lgfpc GSHZ_CITSI : 131- 138: dsikw Nfs--Kf--LVD kegnv GSHZ_NICSY : 133- 140: dsikw Nfs--Kf--LVD kegnv H 8: 15.1876 26( 26) N-Q-x(0,1)-F-x(2)-[DQ] Occurences: 26(26) BTUE_ECOLI : 66- 71: lgfpc NQ-FleQ epgsd GSHC_BOVIN : 82- 87: lgfpc NQ-FghQ enakn GSHC_HUMAN : 77- 82: lgfpc NQ-FghQ enakn GSHC_MOUSE : 77- 82: lgfpc NQ-FghQ engkn GSHC_RABIT : 76- 81: lgfpc NQ-FghQ enakn GSHC_RAT : 77- 82: lgfpc NQ-FghQ engkn GSHC_SCHMA : 73- 78: lafpc NQ-FggQ epwae GSHE_MACFA : 102- 107: lgfpc NQ-FgkQ epgdn GSHE_MOUSE : 102- 107: lgfpc NQ-FgkQ epgdn GSHE_RAT : 102- 107: lgfpc NQ-FgkQ epgdn GSHG_HUMAN : 69- 74: lgfpc NQ-FghQ encqn GSHH_HUMAN : 76- 81: lafpc NQ-FgkQ epgsn GSHH_PIG : 76- 81: lafpc NQ-FgrQ epgsd GSHH_RAT : 76- 81: lafpc NQ-FgrQ epgsn GSHH_YEAST : 69- 75: cgqfg NQeFekD keink GSHI_YEAST : 66- 71: lgfpc NQ-FgkQ epgsd GSHJ_YEAST : 65- 70: igfpc NQ-FghQ epgsd GSHP_BOVIN : 102- 107: lgfpc NQ-FgkQ epgen GSHP_HUMAN : 102- 107: lgfpc NQ-FgkQ epgen GSHP_MOUSE : 102- 107: lgfps NQ-FgkQ epgen GSHP_RAT : 102- 107: lgfpc NQ-FgkQ epgen GSHU_BRUMA : 103- 108: lgfpc NQ-FylQ epaen GSHU_WUCBA : 103- 108: lgfpc NQ-FylQ epaen GSHX_HUMAN : 74- 79: lgfpc NQ-FghQ vygar GSHZ_CITSI : 71- 76: lafpc NQ-FgaQ epgdn GSHZ_NICSY : 73- 78: lafpc NQ-FggQ epgsi I 9: 14.6556 26( 26) V-x-[CST]-x-C-x(1,2)-T Occurences: 26(26) BTUE_ECOLI : 33- 40: llivn VaSkCglT pqyeq GSHC_BOVIN : 48- 54: llien VaSlCg-T tvrdy GSHC_BOVIN : 48- 55: llien VaSlCgtT vrdyt GSHC_HUMAN : 43- 49: llien VaSlCg-T tvrdy GSHC_HUMAN : 43- 50: llien VaSlCgtT vrdyt GSHC_MOUSE : 43- 49: llien VaSlCg-T tirdy GSHC_MOUSE : 43- 50: llien VaSlCgtT irdyt GSHC_RABIT : 42- 48: llien VaSlCg-T tvrdy GSHC_RABIT : 42- 49: llien VaSlCgtT vrdyt GSHC_RAT : 43- 49: llien VaSlCg-T ttrdy GSHC_RAT : 43- 50: llien VaSlCgtT trdyt GSHC_SCHMA : 39- 46: clivn VaCkCgaT dknyr GSHE_MACFA : 69- 76: ilfvn VaTyCglT aqype GSHE_MOUSE : 69- 76: vlfvn VaTyCglT iqype GSHE_RAT : 69- 76: vlfvn VaTyCglT iqype GSHG_HUMAN : 36- 42: vlien VrSlCg-T ttrdf GSHG_HUMAN : 36- 43: vlien VrSlCgtT trdft GSHH_HUMAN : 42- 49: civtn VaSqCgkT evnyt GSHH_PIG : 42- 49: civtn VaSqCgkT evnyt GSHH_RAT : 42- 49: civtn VaSqCgkT dvnyt GSHH_YEAST : 32- 39: vlivn VaShCafT pqyke GSHI_YEAST : 33- 40: vlivn VaSkCgfT pqyke GSHJ_YEAST : 32- 39: vlivn VaSkCgfT pqyke GSHP_BOVIN : 69- 76: ilfvn VaSyCglT gqyve GSHP_HUMAN : 69- 76: vlfvn VaSyCglT gqyie GSHP_MOUSE : 69- 76: ilfvn VaSyCglT dqyle GSHP_RAT : 69- 76: ilfvn VaSyCglT dqyle GSHU_BRUMA : 70- 77: llivn VaTyCayT mqyrd GSHU_WUCBA : 70- 77: llivn VaTyCayT mqyrd GSHX_HUMAN : 43- 49: llien VaSlCg-T tirdy GSHX_HUMAN : 43- 50: llien VaSlCgtT irdyt GSHZ_CITSI : 37- 44: llivn VaSqCglT nsnyt GSHZ_NICSY : 39- 46: liivn VaSqCglT nsnyt J 10: 14.1803 36( 26) L-x(2,3)-N-x(0,2)-V-x(4)-[AG] Occurences: 36(26) BTUE_ECOLI : 28- 38: fagnv LlivN--VaskcG ltpqy BTUE_ECOLI : 29- 38: agnvl Liv-N--VaskcG ltpqy GSHC_BOVIN : 43- 53: lrgkv LlieN--VaslcG ttvrd GSHC_BOVIN : 44- 53: rgkvl Lie-N--VaslcG ttvrd GSHC_HUMAN : 38- 48: lrgkv LlieN--VaslcG ttvrd GSHC_HUMAN : 39- 48: rgkvl Lie-N--VaslcG ttvrd GSHC_MOUSE : 38- 48: lrgkv LlieN--VaslcG ttird GSHC_MOUSE : 39- 48: rgkvl Lie-N--VaslcG ttird GSHC_RABIT : 37- 47: lrgkv LlieN--VaslcG ttvrd GSHC_RABIT : 38- 47: rgkvl Lie-N--VaslcG ttvrd GSHC_RAT : 38- 48: lrgkv LlieN--VaslcG tttrd GSHC_RAT : 39- 48: rgkvl Lie-N--VaslcG tttrd GSHC_SCHMA : 35- 44: rghvc Liv-N--VackcG atdkn GSHE_MACFA : 65- 74: vgkhi Lfv-N--VatycG ltaqy GSHE_MOUSE : 65- 74: rgkhv Lfv-N--VatycG ltiqy GSHE_RAT : 65- 74: agkhv Lfv-N--VatycG ltiqy GSHG_HUMAN : 32- 41: rgrav Lie-N--VrslcG tttrd GSHH_HUMAN : 142- 154: nftkf LidkNgcVvkryG pmeep GSHH_PIG : 142- 154: nftkf LidkNgcVvkryG pmeep GSHH_RAT : 142- 154: nftkf LidkNgcVvkryG pmeep GSHH_YEAST : 28- 37: rnkvv Liv-N--VashcA ftpqy GSHI_YEAST : 29- 38: kgkvv Liv-N--VaskcG ftpqy GSHJ_YEAST : 28- 37: kgkvv Liv-N--VaskcG ftpqy GSHP_BOVIN : 65- 74: agkyi Lfv-N--VasycG ltgqy GSHP_HUMAN : 65- 74: agkyv Lfv-N--VasycG ltgqy GSHP_MOUSE : 65- 74: agkyi Lfv-N--VasycG ltdqy GSHP_RAT : 65- 74: agkyi Lfv-N--VasycG ltdqy GSHU_BRUMA : 65- 75: yrnkv LlivN--VatycA ytmqy GSHU_BRUMA : 66- 75: rnkvl Liv-N--VatycA ytmqy GSHU_WUCBA : 65- 75: yrnkv LlivN--VatycA ytmqy GSHU_WUCBA : 66- 75: rnkvl Liv-N--VatycA ytmqy GSHX_HUMAN : 38- 48: lrgkv LlieN--VaslcG ttird GSHX_HUMAN : 39- 48: rgkvl Lie-N--VaslcG ttird GSHZ_CITSI : 32- 42: ykgkl LlivN--VasqcG ltnsn GSHZ_CITSI : 33- 42: kgkll Liv-N--VasqcG ltnsn GSHZ_NICSY : 34- 44: ykgkv LiivN--VasqcG ltnsn K 11: 13.6721 28( 26) V-x(0,2)-V-x(3,4)-C-[AGN] Occurences: 28(26) BTUE_ECOLI : 31- 38: nvlli Vn-Vask-CG ltpqy GSHC_BOVIN : 75- 82: gprgl V--VlgfpCN qfghq GSHC_HUMAN : 70- 77: gprgl V--VlgfpCN qfghq GSHC_MOUSE : 70- 77: gprgl V--VlgfpCN qfghq GSHC_RABIT : 69- 76: gpral V--VlgfpCN qfghq GSHC_RAT : 70- 77: gprgl V--VlgfpCN qfghq GSHC_SCHMA : 37- 44: hvcli Vn-Vack-CG atdkn GSHE_MACFA : 67- 74: khilf Vn-Vaty-CG ltaqy GSHE_MACFA : 95- 102: kpygl V--VlgfpCN qfgkq GSHE_MOUSE : 67- 74: khvlf Vn-Vaty-CG ltiqy GSHE_RAT : 67- 74: khvlf Vn-Vaty-CG ltiqy GSHG_HUMAN : 62- 69: fprrl V--VlgfpCN qfghq GSHH_HUMAN : 39- 47: gfvci VtnVasq-CG ktevn GSHH_PIG : 39- 47: gyvci VtnVasq-CG ktevn GSHH_RAT : 39- 47: gcvci VtnVasq-CG ktdvn GSHH_YEAST : 30- 37: kvvli Vn-Vash-CA ftpqy GSHH_YEAST : 58- 65: kshgl Vi-Vafp-CG qfgnq GSHI_YEAST : 31- 38: kvvli Vn-Vask-CG ftpqy GSHJ_YEAST : 30- 37: kvvli Vn-Vask-CG ftpqy GSHP_BOVIN : 67- 74: kyilf Vn-Vasy-CG ltgqy GSHP_HUMAN : 67- 74: kyvlf Vn-Vasy-CG ltgqy GSHP_MOUSE : 67- 74: kyilf Vn-Vasy-CG ltdqy GSHP_RAT : 67- 74: kyilf Vn-Vasy-CG ltdqy GSHU_BRUMA : 68- 75: kvlli Vn-Vaty-CA ytmqy GSHU_WUCBA : 68- 75: kvlli Vn-Vaty-CA ytmqy GSHX_HUMAN : 67- 74: krlgl V--VlgfpCN qfghq GSHZ_CITSI : 35- 42: kllli Vn-Vasq-CG ltnsn GSHZ_NICSY : 37- 44: kvlii Vn-Vasq-CG ltnsn L 12: 13.6007 41( 26) F-x(2,3)-Q-x(1,3)-G-x-[DNQ] Occurences: 41(26) BTUE_ECOLI : 68- 76: fpcnq Fle-Qep-GsD eeikt GSHC_BOVIN : 79- 87: lvvlg FpcnQf--GhQ enakn GSHC_HUMAN : 74- 82: lvvlg FpcnQf--GhQ enakn GSHC_MOUSE : 74- 82: lvvlg FpcnQf--GhQ engkn GSHC_MOUSE : 79- 87: fpcnq Fgh-Qen-GkN eeiln GSHC_RABIT : 73- 81: lvvlg FpcnQf--GhQ enakn GSHC_RAT : 74- 82: lvvlg FpcnQf--GhQ engkn GSHC_RAT : 79- 87: fpcnq Fgh-Qen-GkN eeiln GSHC_SCHMA : 70- 78: lrila FpcnQf--GgQ epwae GSHE_MACFA : 99- 107: lvvlg FpcnQf--GkQ epgdn GSHE_MACFA : 104- 112: fpcnq Fgk-Qep-GdN keilp GSHE_MOUSE : 99- 107: lvilg FpcnQf--GkQ epgdn GSHE_MOUSE : 104- 112: fpcnq Fgk-Qep-GdN leilp GSHE_RAT : 99- 107: lvilg FpcnQf--GkQ epgdn GSHE_RAT : 104- 112: fpcnq Fgk-Qep-GdN teilp GSHG_HUMAN : 66- 74: lvvlg FpcnQf--GhQ encqn GSHH_HUMAN : 73- 81: lrila FpcnQf--GkQ epgsn GSHH_HUMAN : 78- 86: fpcnq Fgk-Qep-GsN eeike GSHH_PIG : 73- 81: lrila FpcnQf--GrQ epgsd GSHH_PIG : 78- 86: fpcnq Fgr-Qep-GsD aeike GSHH_RAT : 73- 81: lrila FpcnQf--GrQ epgsn GSHH_RAT : 78- 86: fpcnq Fgr-Qep-GsN qeike GSHH_YEAST : 62- 70: lviva FpcgQf--GnQ efekd GSHI_YEAST : 63- 71: fvilg FpcnQf--GkQ epgsd GSHI_YEAST : 68- 76: fpcnq Fgk-Qep-GsD eqite GSHJ_YEAST : 62- 70: ftiig FpcnQf--GhQ epgsd GSHJ_YEAST : 67- 75: fpcnq Fgh-Qep-GsD eeiaq GSHP_BOVIN : 99- 107: lvilg FpcnQf--GkQ epgen GSHP_BOVIN : 104- 112: fpcnq Fgk-Qep-GeN seila GSHP_HUMAN : 99- 107: lvilg FpcnQf--GkQ epgen GSHP_HUMAN : 104- 112: fpcnq Fgk-Qep-GeN seilp GSHP_MOUSE : 99- 107: lvilg FpsnQf--GkQ epgen GSHP_MOUSE : 104- 112: fpsnq Fgk-Qep-GeN seilp GSHP_RAT : 99- 107: lvilg FpcnQf--GkQ epgen GSHP_RAT : 104- 112: fpcnq Fgk-Qep-GeN seilp GSHU_BRUMA : 45- 54: qtvyd Fqv-QmlnGaQ kslae GSHU_WUCBA : 45- 54: qtvyd Fha-QmlnGaQ rslte GSHX_HUMAN : 71- 79: lvvlg FpcnQf--GhQ vygar GSHZ_CITSI : 68- 76: leila FpcnQf--GaQ epgdn GSHZ_CITSI : 73- 81: fpcnq Fga-Qep-GdN eqiqe GSHZ_NICSY : 70- 78: leila FpcnQf--GgQ epgsi M 13: 13.1357 26( 26) P-x(1,3)-N-x(1,3)-F-[GLP] Occurences: 26(26) BTUE_ECOLI : 64- 69: mvlgf Pc--Nq--FL eqepg GSHC_BOVIN : 80- 85: vvlgf Pc--Nq--FG hqena GSHC_HUMAN : 75- 80: vvlgf Pc--Nq--FG hqena GSHC_MOUSE : 75- 80: vvlgf Pc--Nq--FG hqeng GSHC_RABIT : 74- 79: vvlgf Pc--Nq--FG hqena GSHC_RAT : 75- 80: vvlgf Pc--Nq--FG hqeng GSHC_SCHMA : 71- 76: rilaf Pc--Nq--FG gqepw GSHE_MACFA : 100- 105: vvlgf Pc--Nq--FG kqepg GSHE_MOUSE : 100- 105: vilgf Pc--Nq--FG kqepg GSHE_RAT : 100- 105: vilgf Pc--Nq--FG kqepg GSHG_HUMAN : 67- 72: vvlgf Pc--Nq--FG hqenc GSHH_HUMAN : 74- 79: rilaf Pc--Nq--FG kqepg GSHH_PIG : 74- 79: rilaf Pc--Nq--FG rqepg GSHH_RAT : 74- 79: rilaf Pc--Nq--FG rqepg GSHH_YEAST : 9- 18: fysfs PideNgnpFP fnslr GSHI_YEAST : 64- 69: vilgf Pc--Nq--FG kqepg GSHJ_YEAST : 63- 68: tiigf Pc--Nq--FG hqepg GSHP_BOVIN : 100- 105: vilgf Pc--Nq--FG kqepg GSHP_HUMAN : 100- 105: vilgf Pc--Nq--FG kqepg GSHP_MOUSE : 100- 105: vilgf Ps--Nq--FG kqepg GSHP_RAT : 100- 105: vilgf Pc--Nq--FG kqepg GSHU_BRUMA : 131- 139: ghgwe Phk-NmhiFG klevn GSHU_WUCBA : 131- 139: ghgwe Phk-NmhiFG klevn GSHX_HUMAN : 72- 77: vvlgf Pc--Nq--FG hqvyg GSHZ_CITSI : 69- 74: eilaf Pc--Nq--FG aqepg GSHZ_NICSY : 71- 76: eilaf Pc--Nq--FG gqepg N 14: 12.5102 26( 26) Q-F-x(2)-Q Occurences: 26(26) BTUE_ECOLI : 67- 71: gfpcn QFleQ epgsd GSHC_BOVIN : 83- 87: gfpcn QFghQ enakn GSHC_HUMAN : 78- 82: gfpcn QFghQ enakn GSHC_MOUSE : 78- 82: gfpcn QFghQ engkn GSHC_RABIT : 77- 81: gfpcn QFghQ enakn GSHC_RAT : 78- 82: gfpcn QFghQ engkn GSHC_SCHMA : 74- 78: afpcn QFggQ epwae GSHE_MACFA : 103- 107: gfpcn QFgkQ epgdn GSHE_MOUSE : 103- 107: gfpcn QFgkQ epgdn GSHE_RAT : 103- 107: gfpcn QFgkQ epgdn GSHG_HUMAN : 70- 74: gfpcn QFghQ encqn GSHH_HUMAN : 77- 81: afpcn QFgkQ epgsn GSHH_PIG : 77- 81: afpcn QFgrQ epgsd GSHH_RAT : 77- 81: afpcn QFgrQ epgsn GSHH_YEAST : 66- 70: afpcg QFgnQ efekd GSHI_YEAST : 67- 71: gfpcn QFgkQ epgsd GSHJ_YEAST : 66- 70: gfpcn QFghQ epgsd GSHP_BOVIN : 103- 107: gfpcn QFgkQ epgen GSHP_HUMAN : 103- 107: gfpcn QFgkQ epgen GSHP_MOUSE : 103- 107: gfpsn QFgkQ epgen GSHP_RAT : 103- 107: gfpcn QFgkQ epgen GSHU_BRUMA : 104- 108: gfpcn QFylQ epaen GSHU_WUCBA : 104- 108: gfpcn QFylQ epaen GSHX_HUMAN : 75- 79: gfpcn QFghQ vygar GSHZ_CITSI : 72- 76: afpcn QFgaQ epgdn GSHZ_NICSY : 74- 78: afpcn QFggQ epgsi O 15: 12.0102 26( 26) N-x-F-x(1,2)-Q Occurences: 26(26) BTUE_ECOLI : 66- 71: lgfpc NqFleQ epgsd GSHC_BOVIN : 82- 87: lgfpc NqFghQ enakn GSHC_HUMAN : 77- 82: lgfpc NqFghQ enakn GSHC_MOUSE : 77- 82: lgfpc NqFghQ engkn GSHC_RABIT : 76- 81: lgfpc NqFghQ enakn GSHC_RAT : 77- 82: lgfpc NqFghQ engkn GSHC_SCHMA : 73- 78: lafpc NqFggQ epwae GSHE_MACFA : 102- 107: lgfpc NqFgkQ epgdn GSHE_MOUSE : 102- 107: lgfpc NqFgkQ epgdn GSHE_RAT : 102- 107: lgfpc NqFgkQ epgdn GSHG_HUMAN : 69- 74: lgfpc NqFghQ encqn GSHH_HUMAN : 76- 81: lafpc NqFgkQ epgsn GSHH_PIG : 76- 81: lafpc NqFgrQ epgsd GSHH_RAT : 76- 81: lafpc NqFgrQ epgsn GSHH_YEAST : 79- 83: kdkei NkFc-Q dkygv GSHI_YEAST : 66- 71: lgfpc NqFgkQ epgsd GSHJ_YEAST : 65- 70: igfpc NqFghQ epgsd GSHP_BOVIN : 102- 107: lgfpc NqFgkQ epgen GSHP_HUMAN : 102- 107: lgfpc NqFgkQ epgen GSHP_MOUSE : 102- 107: lgfps NqFgkQ epgen GSHP_RAT : 102- 107: lgfpc NqFgkQ epgen GSHU_BRUMA : 103- 108: lgfpc NqFylQ epaen GSHU_WUCBA : 103- 108: lgfpc NqFylQ epaen GSHX_HUMAN : 74- 79: lgfpc NqFghQ vygar GSHZ_CITSI : 71- 76: lafpc NqFgaQ epgdn GSHZ_NICSY : 73- 78: lafpc NqFggQ epgsi P 16: 11.0102 34( 26) L-x(0,1)-K-x(2,4)-G Occurences: 34(26) BTUE_ECOLI : 20- 25: gevtt LeKfa--G nvlli GSHC_BOVIN : 99- 105: eilnc L-KyvrpG ggfep GSHC_HUMAN : 94- 100: eilns L-KyvrpG ggfep GSHC_MOUSE : 60- 65: temnd LqKrl--G prglv GSHC_MOUSE : 94- 100: eilns L-KyvrpG ggfep GSHC_RABIT : 93- 99: eilns L-KyvrpG ggfep GSHC_RABIT : 193- 198: diqal LsKgs--G ga GSHC_RABIT : 193- 199: diqal LsKgsg-G a GSHC_RAT : 60- 65: temnd LqKrl--G prglv GSHC_RAT : 94- 100: eilns L-KyvrpG ggfep GSHC_SCHMA : 26- 31: gvdvs LeKyr--G hvcli GSHC_SCHMA : 118- 124: dlykf L-KsrqhG tltnn GSHE_MACFA : 89- 93: alqee L-Kpy--G lvvlg GSHE_MACFA : 119- 125: eilpg L-KyvrpG ggfvp GSHE_MOUSE : 89- 93: alqed L-Kpf--G lvilg GSHE_MOUSE : 119- 125: eilpg L-KyvrpG kgflp GSHE_RAT : 89- 93: alqdd L-Kqf--G lvilg GSHE_RAT : 119- 125: eilpg L-KyvrpG kgflp GSHG_HUMAN : 86- 92: eilns L-KyvrpG ggyqp GSHH_HUMAN : 29- 34: ghmvn LdKyr--G fvciv GSHH_PIG : 29- 34: ghmvn LdKyr--G yvciv GSHH_RAT : 29- 34: ghmvc LdKyr--G cvciv GSHH_YEAST : 93- 100: vtfpi LhKircnG qkqdp GSHH_YEAST : 110- 116: pvykf L-KnsvsG ksgik GSHI_YEAST : 111- 117: svyny L-KsqkaG llgfk GSHJ_YEAST : 110- 116: pvykf L-KsqksG mlglr GSHP_BOVIN : 119- 125: eilat L-KyvrpG ggftp GSHP_HUMAN : 119- 125: eilpt L-KyvrpG ggfvp GSHP_MOUSE : 119- 125: eilps L-KyvrpG ggfvp GSHP_RAT : 119- 125: eilps L-KyvrpG ggfvp GSHU_BRUMA : 120- 126: ellsg L-KyvrpG hgwep GSHU_WUCBA : 120- 126: ellng L-KyvrpG hgwep GSHX_HUMAN : 60- 65: temnd LqKrl--G lvvlg GSHZ_CITSI : 116- 121: plykh L-Kssk-G glfgd GSHZ_CITSI : 116- 122: plykh L-KsskgG lfgds GSHZ_NICSY : 118- 123: plykf L-Kssk-G gffgd GSHZ_NICSY : 118- 124: plykf L-KsskgG ffgds Q 17: 10.5102 39( 26) K-x(1,3)-L-x(3,5)-G Occurences: 39(26) BTUE_ECOLI : 149- 156: lwnfe Kf--Lvgrd-G kviqr GSHC_BOVIN : 169- 176: swnfe Kf--Lvgpd-G vpvrr GSHC_HUMAN : 164- 171: awnfe Kf--Lvgpd-G vplrr GSHC_MOUSE : 62- 68: mndlq Kr--Lgpr--G lvvlg GSHC_MOUSE : 164- 171: awnfe Kf--Lvgpd-G vpvrr GSHC_RABIT : 163- 170: swsfe Kf--Lvgpd-G vpvrr GSHC_RAT : 62- 68: mndlq Kr--Lgpr--G lvvlg GSHC_RAT : 164- 171: swnfe Kf--Lvgpd-G vpvrr GSHC_SCHMA : 116- 124: addly Kf--LksrqhG tltnn GSHC_SCHMA : 136- 143: kwnfs Kf--Lvdrq-G qpvkr GSHE_MACFA : 90- 98: lqeel KpygLvvl--G fpcnq GSHE_MACFA : 185- 192: rwnfe Kf--Lvgpd-G ipvmr GSHE_MOUSE : 90- 98: lqedl KpfgLvil--G fpcnq GSHE_MOUSE : 185- 192: rwnfe Kf--Lvgpd-G vpvmr GSHE_RAT : 90- 98: lqddl KqfgLvil--G fpcnq GSHE_RAT : 185- 192: rwnfe Kf--Lvgpn-G vpvmr GSHG_HUMAN : 156- 163: awnfe Kf--Ligpe-G epfrr GSHH_HUMAN : 140- 147: kwnft Kf--Lidkn-G cvvkr GSHH_PIG : 140- 147: kwnft Kf--Lidkn-G cvvkr GSHH_RAT : 140- 147: kwnft Kf--Lidkn-G cvvkr GSHH_YEAST : 108- 116: qdpvy Kf--LknsvsG ksgik GSHI_YEAST : 115- 123: ylksq KaglLgfk--G ikwnf GSHI_YEAST : 115- 123: ylksq Kag-Llgfk-G ikwnf GSHI_YEAST : 130- 137: kwnfe Kf--Lvdsn-G kvvqr GSHJ_YEAST : 108- 116: edpvy Kf--LksqksG mlglr GSHJ_YEAST : 114- 122: flksq KsgmLglr--G ikwnf GSHJ_YEAST : 129- 136: kwnfe Kf--Lvdkk-G kvyer GSHP_BOVIN : 185- 192: rwnfe Kf--Lvgpd-G ipimr GSHP_HUMAN : 185- 192: rwnfe Kf--Lvgpd-G ipimr GSHP_MOUSE : 185- 192: rwnfe Kf--Lvgpd-G ipvmr GSHP_RAT : 185- 192: rwnfe Kf--Lvgpd-G ipimr GSHU_BRUMA : 168- 178: vpvig KrhqLiydpiG tndvi GSHU_BRUMA : 188- 195: iwnfe Kf--Lvdkk-G rpryr GSHU_WUCBA : 168- 178: vpvig KrhqLiydpiG tndvi GSHU_WUCBA : 188- 195: iwnfe Kf--Lvdkk-G rpryr GSHX_HUMAN : 62- 70: mndlq KrlgLvvl--G fpcnq GSHX_HUMAN : 62- 70: mndlq Kr--LglvvlG fpcnq GSHZ_CITSI : 114- 121: aaply Kh--Lkssk-G glfgd GSHZ_CITSI : 114- 122: aaply Kh--LksskgG lfgds GSHZ_CITSI : 134- 141: kwnfs Kf--Lvdke-G nvver GSHZ_NICSY : 116- 123: aaply Kf--Lkssk-G gffgd GSHZ_NICSY : 116- 124: aaply Kf--LksskgG ffgds GSHZ_NICSY : 136- 143: kwnfs Kf--Lvdke-G nvvdr R 18: 10.2506 48( 26) L-x(2)-P-x-[DEGNS] Occurences: 48(26) BTUE_ECOLI : 61- 66: rgfmv LgfPcN qfleq GSHC_BOVIN : 77- 82: rglvv LgfPcN qfghq GSHC_BOVIN : 136- 141: flrev LptPsD datal GSHC_BOVIN : 171- 176: nfekf LvgPdG vpvrr GSHC_HUMAN : 72- 77: rglvv LgfPcN qfghq GSHC_HUMAN : 131- 136: flrea LpaPsD datal GSHC_HUMAN : 166- 171: nfekf LvgPdG vplrr GSHC_MOUSE : 72- 77: rglvv LgfPcN qfghq GSHC_MOUSE : 131- 136: flrna LptPsD dptal GSHC_MOUSE : 166- 171: nfekf LvgPdG vpvrr GSHC_RABIT : 71- 76: ralvv LgfPcN qfghq GSHC_RABIT : 130- 135: flrea LppPsD dptal GSHC_RABIT : 165- 170: sfekf LvgPdG vpvrr GSHC_RAT : 72- 77: rglvv LgfPcN qfghq GSHC_RAT : 131- 136: flrna LpaPsD dptal GSHC_RAT : 166- 171: nfekf LvgPdG vpvrr GSHC_SCHMA : 68- 73: kglri LafPcN qfggq GSHE_MACFA : 97- 102: yglvv LgfPcN qfgkq GSHE_MACFA : 187- 192: nfekf LvgPdG ipvmr GSHE_MOUSE : 97- 102: fglvi LgfPcN qfgkq GSHE_MOUSE : 187- 192: nfekf LvgPdG vpvmr GSHE_RAT : 97- 102: fglvi LgfPcN qfgkq GSHE_RAT : 187- 192: nfekf LvgPnG vpvmr GSHG_HUMAN : 64- 69: rrlvv LgfPcN qfghq GSHG_HUMAN : 123- 128: ylkdk LpyPyD dpfsl GSHG_HUMAN : 158- 163: nfekf LigPeG epfrr GSHH_HUMAN : 71- 76: cglri LafPcN qfgkq GSHH_PIG : 71- 76: cglri LafPcN qfgrq GSHH_RAT : 71- 76: cglri LafPcN qfgrq GSHH_YEAST : 159- 164: iieel LnqPpE eqi GSHI_YEAST : 61- 66: kgfvi LgfPcN qfgkq GSHI_YEAST : 146- 151: qrfss LtkPsS ldqei GSHJ_YEAST : 145- 150: eryss LtkPsS lseti GSHP_BOVIN : 97- 102: fglvi LgfPcN qfgkq GSHP_BOVIN : 187- 192: nfekf LvgPdG ipimr GSHP_HUMAN : 97- 102: fglvi LgfPcN qfgkq GSHP_HUMAN : 187- 192: nfekf LvgPdG ipimr GSHP_MOUSE : 97- 102: fglvi LgfPsN qfgkq GSHP_MOUSE : 187- 192: nfekf LvgPdG ipvmr GSHP_RAT : 97- 102: fglvi LgfPcN qfgkq GSHP_RAT : 187- 192: nfekf LvgPdG ipimr GSHU_BRUMA : 98- 103: gtlni LgfPcN qfylq GSHU_BRUMA : 107- 112: cnqfy LqePaE nhell GSHU_WUCBA : 98- 103: gtlni LgfPcN qfylq GSHU_WUCBA : 107- 112: cnqfy LqePaE nhell GSHX_HUMAN : 69- 74: lglvv LgfPcN qfghq GSHZ_CITSI : 66- 71: qglei LafPcN qfgaq GSHZ_NICSY : 68- 73: qglei LafPcN qfggq S 19: 8.3401 44( 26) L-V Occurences: 44(26) BTUE_ECOLI : 151- 152: nfekf LV grdgk GSHC_BOVIN : 74- 75: lgprg LV vlgfp GSHC_BOVIN : 171- 172: nfekf LV gpdgv GSHC_HUMAN : 69- 70: lgprg LV vlgfp GSHC_HUMAN : 166- 167: nfekf LV gpdgv GSHC_MOUSE : 69- 70: lgprg LV vlgfp GSHC_MOUSE : 166- 167: nfekf LV gpdgv GSHC_RABIT : 68- 69: lgpra LV vlgfp GSHC_RABIT : 165- 166: sfekf LV gpdgv GSHC_RAT : 69- 70: lgprg LV vlgfp GSHC_RAT : 166- 167: nfekf LV gpdgv GSHC_SCHMA : 60- 61: emhtr LV gkglr GSHC_SCHMA : 138- 139: nfskf LV drqgq GSHE_MACFA : 94- 95: lkpyg LV vlgfp GSHE_MACFA : 187- 188: nfekf LV gpdgi GSHE_MOUSE : 10- 11: lrvfy LV pllla GSHE_MOUSE : 94- 95: lkpfg LV ilgfp GSHE_MOUSE : 187- 188: nfekf LV gpdgv GSHE_RAT : 10- 11: lrvfy LV pllla GSHE_RAT : 94- 95: lkqfg LV ilgfp GSHE_RAT : 187- 188: nfekf LV gpngv GSHG_HUMAN : 61- 62: rfprr LV vlgfp GSHG_HUMAN : 101- 102: qptft LV qkcev GSHH_HUMAN : 56- 57: vnytq LV dlhar GSHH_HUMAN : 160- 161: pmeep LV iekdl GSHH_PIG : 56- 57: vnytq LV dlhar GSHH_RAT : 56- 57: vnytq LV dlhar GSHH_YEAST : 57- 58: ykshg LV ivafp GSHI_YEAST : 132- 133: nfekf LV dsngk GSHJ_YEAST : 131- 132: nfekf LV dkkgk GSHP_BOVIN : 94- 95: lepfg LV ilgfp GSHP_BOVIN : 187- 188: nfekf LV gpdgi GSHP_HUMAN : 94- 95: lapfg LV ilgfp GSHP_HUMAN : 187- 188: nfekf LV gpdgi GSHP_MOUSE : 94- 95: lgpfg LV ilgfp GSHP_MOUSE : 187- 188: nfekf LV gpdgi GSHP_RAT : 94- 95: lgpfg LV ilgfp GSHP_RAT : 187- 188: nfekf LV gpdgi GSHU_BRUMA : 190- 191: nfekf LV dkkgr GSHU_WUCBA : 190- 191: nfekf LV dkkgr GSHX_HUMAN : 66- 67: qkrlg LV vlgfp GSHX_HUMAN : 103- 104: rllsp LV lqlec GSHZ_CITSI : 136- 137: nfskf LV dkegn GSHZ_NICSY : 138- 139: nfskf LV dkegn T 20: 8.3401 52( 26) L-x(2)-P Occurences: 52(26) BTUE_ECOLI : 61- 64: rgfmv LgfP cnqfl GSHC_BOVIN : 77- 80: rglvv LgfP cnqfg GSHC_BOVIN : 136- 139: flrev LptP sddat GSHC_BOVIN : 171- 174: nfekf LvgP dgvpv GSHC_HUMAN : 72- 75: rglvv LgfP cnqfg GSHC_HUMAN : 131- 134: flrea LpaP sddat GSHC_HUMAN : 166- 169: nfekf LvgP dgvpl GSHC_MOUSE : 72- 75: rglvv LgfP cnqfg GSHC_MOUSE : 131- 134: flrna LptP sddpt GSHC_MOUSE : 166- 169: nfekf LvgP dgvpv GSHC_RABIT : 71- 74: ralvv LgfP cnqfg GSHC_RABIT : 130- 133: flrea LppP sddpt GSHC_RABIT : 165- 168: sfekf LvgP dgvpv GSHC_RAT : 72- 75: rglvv LgfP cnqfg GSHC_RAT : 131- 134: flrna LpaP sddpt GSHC_RAT : 166- 169: nfekf LvgP dgvpv GSHC_SCHMA : 68- 71: kglri LafP cnqfg GSHE_MACFA : 97- 100: yglvv LgfP cnqfg GSHE_MACFA : 187- 190: nfekf LvgP dgipv GSHE_MOUSE : 97- 100: fglvi LgfP cnqfg GSHE_MOUSE : 187- 190: nfekf LvgP dgvpv GSHE_RAT : 97- 100: fglvi LgfP cnqfg GSHE_RAT : 187- 190: nfekf LvgP ngvpv GSHG_HUMAN : 64- 67: rrlvv LgfP cnqfg GSHG_HUMAN : 123- 126: ylkdk LpyP yddpf GSHG_HUMAN : 158- 161: nfekf LigP egepf GSHH_HUMAN : 71- 74: cglri LafP cnqfg GSHH_PIG : 71- 74: cglri LafP cnqfg GSHH_RAT : 71- 74: cglri LafP cnqfg GSHH_YEAST : 159- 162: iieel LnqP peeqi GSHI_YEAST : 61- 64: kgfvi LgfP cnqfg GSHI_YEAST : 146- 149: qrfss LtkP ssldq GSHJ_YEAST : 145- 148: eryss LtkP sslse GSHP_BOVIN : 97- 100: fglvi LgfP cnqfg GSHP_BOVIN : 163- 166: ptsel LgsP drlfw GSHP_BOVIN : 187- 190: nfekf LvgP dgipi GSHP_HUMAN : 97- 100: fglvi LgfP cnqfg GSHP_HUMAN : 187- 190: nfekf LvgP dgipi GSHP_MOUSE : 97- 100: fglvi LgfP snqfg GSHP_MOUSE : 163- 166: ptael LgsP grlfw GSHP_MOUSE : 187- 190: nfekf LvgP dgipv GSHP_RAT : 97- 100: fglvi LgfP cnqfg GSHP_RAT : 163- 166: ptael LgsP grlfw GSHP_RAT : 187- 190: nfekf LvgP dgipi GSHU_BRUMA : 98- 101: gtlni LgfP cnqfy GSHU_BRUMA : 107- 110: cnqfy LqeP aenhe GSHU_WUCBA : 98- 101: gtlni LgfP cnqfy GSHU_WUCBA : 107- 110: cnqfy LqeP aenhe GSHX_HUMAN : 69- 72: lglvv LgfP cnqfg GSHX_HUMAN : 99- 102: raghr LlsP lvlql GSHZ_CITSI : 66- 69: qglei LafP cnqfg GSHZ_NICSY : 68- 71: qglei LafP cnqfg Number of patterns evaluated by Pratt:421 Total running time: 1 seconds