------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 8 sequences from file GLUTAMATE_5_KINASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 8 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GLUTAMATE_5_KINASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: P5CS_VIGAC 671 PROB_BACSU 354 PROB_CORGL 369 PROB_ECOLI 367 PROB_HAEIN 368 PROB_SERMA 367 PROB_YEAST 428 YHJ3_YEAST 423 Pratt run started at Thu Feb 6 19:35:33 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 49.0406 8( 8) D-N-D-x-L-x-A-x(4,5)-L-x(1,2)-A-x(2)-L-x(2)-L-x-D-x(3)-L-x(4)-P 2: 44.8706 8( 8) N-D-x-L-x-A-x(4,5)-L-x(1,2)-A-x(2)-L-x(2)-L-x-D-x(3)-L-x(4)-P 3: 33.3604 8( 8) G-x-G-G-M-x(2)-K-x(2)-A-x(3)-A-x(3)-G 4: 32.8604 8( 8) G-x(0,1)-G-G-M-x(2)-K-x(2)-A-x(3)-A-x(3)-G 5: 32.3604 9( 8) A-x(4,5)-L-x(1,2)-A-x(2)-L-x(2)-L-x-D-x(3)-L-x(4)-P 6: 32.3604 8( 8) A-x(3,4)-L-x(2,3)-A-x(2)-L-x(2)-L-x-D-x(3)-L-x(4)-P 7: 28.1904 16( 8) G-x(0,1)-G-x(0,1)-M-x(2)-K-x(2)-A-x(3)-A-x(3)-G 8: 28.1904 8( 8) L-x(0,2)-A-x(2)-L-x(2)-L-x-D-x(3)-L-x(4)-P 9: 25.0203 8( 8) A-x(2)-L-x(2)-L-x-D-x(3)-L-x(4)-P 10: 24.0203 9( 8) L-x(1,2)-A-x(0,1)-D-x-L-x(2)-L-x-D 11: 23.5203 8( 8) G-x-G-G-M-x(0,2)-K-x(3,4)-A 12: 20.8503 8( 8) M-x(2)-K-x(2)-A-x(3)-A-x(3)-G 13: 20.8503 8( 8) G-x(3)-K-x(2)-A-x(3)-A-x(3)-G 14: 20.8503 8( 8) L-x(2)-L-x-D-x(3)-L-x(4)-P 15: 20.8503 8( 8) P-x(2)-N-E-N-D 16: 20.3503 9( 8) A-x(0,1)-D-x-L-x(2)-L-x-D 17: 20.3503 8( 8) G-x-N-x(1,2)-L-x-A-x(4)-L 18: 20.3503 8( 8) A-A-x-G-Q-x(1,2)-L 19: 20.3503 10( 8) A-x-A-A-x(0,1)-G-x(3)-L 20: 19.8503 8( 8) L-S-A-x(4,5)-L-x(1,2)-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 93.5002 8( 8) P-[IV]-[FIV]-N-E-N-D-[AST]-x-[AS]-x(3)-[AILV]-x(2)-[EG]-D-[NS]-[DS]-x-[IL]-x(3)-[ANTV]-[ADS]-x-L-x(2)-[AL]-x(2)-L-x-[IL]-x-[AST]-D-x(2)-[CGV]-L-x-[DST]-x-[DNV]-[EP] B 2: 87.6348 8( 8) A-A-[IV]-G-Q-x(1,2)-L-[IM]-x(2)-[WY]-x(3)-F-x(3)-[DGS]-x(3)-[AG]-Q-[ILMV]-L-[LV]-T-x-[AN]-D-x(2)-[DKR]-x-[DENT]-x(3)-[NQ]-[AL]-x(2)-T-[ILMV]-x(2)-L C 3: 75.4669 8( 8) D-N-D-x-L-[AS]-A-x(4,5)-L-x(1,2)-A-[DE]-x-L-x-[IL]-L-[ST]-D-x(2)-[CG]-L-[FY]-[DST]-x-[DNP]-P-x(4)-[ADEQS] D 4: 71.2969 8( 8) N-D-x-L-[AS]-A-x(4,5)-L-x(1,2)-A-[DE]-x-L-x-[IL]-L-[ST]-D-x(2)-[CG]-L-[FY]-[DST]-x-[DNP]-P-x(4)-[ADEQS] E 5: 64.0487 8( 8) G-x-G-G-M-x-[AST]-K-[ILV]-x-A-[AT]-x(2)-A-x-[ENRS]-x-G-[IV]-x-[TV]-[FILV]-[ILV]-x(2)-[AGS]-x(3)-[AEGNQ]-x-[AILV]-[AGILP] F 6: 63.5487 8( 8) G-x(0,1)-G-G-M-x-[AST]-K-[ILV]-x-A-[AT]-x(2)-A-x-[ENRS]-x-G-[IV]-x-[TV]-[FILV]-[ILV]-x(2)-[AGS]-x(3)-[AEGNQ]-x-[AILV]-[AGILP] G 7: 58.8787 16( 8) G-x(0,1)-G-x(0,1)-M-x-[AST]-K-[ILV]-x-A-[AT]-x(2)-A-x-[ENRS]-x-G-[IV]-x-[TV]-[FILV]-[ILV]-x(2)-[AGS]-x(3)-[AEGNQ]-x-[AILV]-[AGILP] H 8: 55.7086 8( 8) G-M-x-[AST]-K-[ILV]-x-A-[AT]-x(2)-A-x-[ENRS]-x-G-[IV]-x-[TV]-[FILV]-[ILV]-x(2)-[AGS]-x(3)-[AEGNQ]-x-[AILV]-[AGILP] I 9: 55.6076 9( 8) A-x(4,5)-L-x(1,2)-A-[DE]-x-L-x-[IL]-L-[ST]-D-x(2)-[CG]-L-[FY]-[DST]-x-[DNP]-P-x(4)-[ADEQS] J 10: 55.6076 8( 8) A-x(3,4)-L-x(2,3)-A-[DE]-x-L-x-[IL]-L-[ST]-D-x(2)-[CG]-L-[FY]-[DST]-x-[DNP]-P-x(4)-[ADEQS] K 11: 53.3328 8( 8) G-[DQ]-N-x(1,2)-L-x-A-[IL]-x-[ADS]-x-L-x(2)-[AQ]-x(2)-[LV]-x(2)-[AL]-[QST]-x(3)-[CGT]-x(2)-[DT]-x-[DNR]-[DP] L 12: 51.9446 8( 8) G-x-G-G-M-x(0,2)-K-x(3,4)-A-x(2)-[AT]-[ACST]-x-[AS]-[GL]-[GIV]-x(2)-[ILV]-[FILV]-x(2)-[AGST]-x(2)-[GIP]-[AEGN]-x(2)-[AGILP] M 13: 51.5386 8( 8) M-x-[AST]-K-[ILV]-x-A-[AT]-x(2)-A-x-[ENRS]-x-G-[IV]-x-[TV]-[FILV]-[ILV]-x(2)-[AGS]-x(3)-[AEGNQ]-x-[AILV]-[AGILP] N 14: 51.4375 8( 8) L-x(0,2)-A-[DE]-x-L-x-[IL]-L-[ST]-D-x(2)-[CG]-L-[FY]-[DST]-x-[DNP]-P-x(4)-[ADEQS] O 15: 48.2675 8( 8) A-[DE]-x-L-x-[IL]-L-[ST]-D-x(2)-[CG]-L-[FY]-[DST]-x-[DNP]-P-x(4)-[ADEQS] P 16: 47.8600 8( 8) L-S-A-x(4,5)-L-x(1,2)-A-[ADE]-x-[AL]-x(2)-[IL]-x(4)-[CG]-[AL]-x-[DEST]-[ADGS]-x-[PT]-[NRS]-x(3)-[DEQS] Q 17: 42.0446 8( 8) L-x(1,2)-A-x(0,1)-D-x-L-x-[AIL]-L-x-D-x(3)-[IL]-x-[DSTV]-x-[DNP]-[EP]-x-[DENST]-x(2)-[ADQS] R 18: 40.9268 8( 8) L-x-[IL]-L-[ST]-D-x(2)-[CG]-L-[FY]-[DST]-x-[DNP]-P-x(4)-[ADEQS] S 19: 38.3746 8( 8) A-x(0,1)-D-x-L-x-[AIL]-L-x-D-x(3)-[IL]-x-[DSTV]-x-[DNP]-[EP]-x-[DENST]-x(2)-[ADQS] T 20: 31.3695 8( 8) D-N-D-x-L-[AS]-A-x(4,5)-L-x(1,2)-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 93.5002 8( 8) P-[IV]-[FIV]-N-E-N-D-[AST]-x-[AS]-x(3)-[AILV]-x(2)-[EG]-D-[NS]-[DS]-x-[IL]-x(3)-[ANTV]-[ADS]-x-L-x(2)-[AL]-x(2)-L-x-[IL]-x-[AST]-D-x(2)-[CGV]-L-x-[DST]-x-[DNV]-[EP] Occurences: 8(8) P5CS_VIGAC : 152- 200: alkvi PVFNENDAvStrkApyEDSSgIfwdNDsLsaLlaLeLkADllVLlSdVE glysg PROB_BACSU : 129- 177: ergvi PIINENDStSveeLtfGDNDmLsalVSgLihAdqLmIlTDinGLyDaNP neils PROB_CORGL : 137- 185: ilgav PIVNENDTvAttgVnfGDNDrLaaiVAhLvsAdaLvLlSDvdGLfDkNP tdpta PROB_ECOLI : 131- 179: dnniv PVINENDAvAtaaIkvGDNDnLsalAAiLagAdkLlLlTDqkGLyTaDP rsnpq PROB_HAEIN : 130- 178: dnhii PVINENDAvAtaeIkvGDNDnLsalVAiLvqAeqLyLlTDqqGLfDsDP rknpe PROB_SERMA : 131- 179: dnriv PVINENDAvAtaeIkvGDNDnLsalAAiLagAdkLlLlTDqqGLyTaDP rnnpq PROB_YEAST : 137- 185: nmgvi PIVNENDTlSvreIkfGDNDtLsaiTSaLihAdyLfLlTDvdCLyTdNP rtnpd YHJ3_YEAST : 132- 180: amgvi PIVNENDTlSiseIefGDNDtLsaiTAaLvgAdfLfLlTDvdCLyTdNP rtnpd B 2: 87.6348 8( 8) A-A-[IV]-G-Q-x(1,2)-L-[IM]-x(2)-[WY]-x(3)-F-x(3)-[DGS]-x(3)-[AG]-Q-[ILMV]-L-[LV]-T-x-[AN]-D-x(2)-[DKR]-x-[DENT]-x(3)-[NQ]-[AL]-x(2)-T-[ILMV]-x(2)-L Occurences: 8(8) P5CS_VIGAC : 97- 145: dgkac AAVGQnsLMalYdtlFtqlDvtsAQLLVTdNDfrDkDfrkQLteTVksL lalkv PROB_BACSU : 74- 122: gkqaa AAVGQtlLMqqYmnqFkqySltpGQILLTrNDfsKrEryrNAyaTImeL lergv PROB_CORGL : 82- 130: vkqaa AAVGQvhLMhqWgrsFaryGrpiGQVLLTaADagKrDrarNAqrTIdkL rilga PROB_ECOLI : 76- 124: skqll AAVGQsrLIqlWeqlFsiyGihvGQMLLTrADmeDrErflNArdTLraL ldnni PROB_HAEIN : 75- 123: skqll AAVGQsqLIqaWeklFaiyDihiGQLLLTrADieDrErflNArdTLyaL ldnhi PROB_SERMA : 76- 124: skqll AAVGQsrLIqlWeqlFsiyGihvGQMLLTrADleDrErflNArdTMtaL ldnri PROB_YEAST : 82- 130: evqai AAIGQgrLIgrWdllFsqfDqriAQILLTrNDilDwTqykNAqnTIneL lnmgv YHJ3_YEAST : 77- 125: evqai AAVGQgrLIarWnmlFsqyGeqtAQILLTrNDilRwNqynNArnTIneL lamgv C 3: 75.4669 8( 8) D-N-D-x-L-[AS]-A-x(4,5)-L-x(1,2)-A-[DE]-x-L-x-[IL]-L-[ST]-D-x(2)-[CG]-L-[FY]-[DST]-x-[DNP]-P-x(4)-[ADEQS] Occurences: 8(8) P5CS_VIGAC : 176- 212: sgifw DNDsLSAllaleLk-ADlLvLLSDveGLYSgPPsdphS kliyt PROB_BACSU : 146- 182: eltfg DNDmLSAlvsg-LihADqLmILTDinGLYDaNPneilS erfdy PROB_CORGL : 154- 190: gvnfg DNDrLAAivah-LvsADaLvLLSDvdGLFDkNPtdptA kfise PROB_ECOLI : 148- 184: aikvg DNDnLSAlaai-LagADkLlLLTDqkGLYTaDPrsnpQ aelik PROB_HAEIN : 147- 183: eikvg DNDnLSAlvai-LvqAEqLyLLTDqqGLFDsDPrknpE aklip PROB_SERMA : 148- 184: eikvg DNDnLSAlaai-LagADkLlLLTDqqGLYTaDPrnnpQ aelir PROB_YEAST : 154- 190: eikfg DNDtLSAitsa-LihADyLfLLTDvdCLYTdNPrtnpD ampil YHJ3_YEAST : 149- 185: eiefg DNDtLSAitaa-LvgADfLfLLTDvdCLYTdNPrtnpD arpiv D 4: 71.2969 8( 8) N-D-x-L-[AS]-A-x(4,5)-L-x(1,2)-A-[DE]-x-L-x-[IL]-L-[ST]-D-x(2)-[CG]-L-[FY]-[DST]-x-[DNP]-P-x(4)-[ADEQS] Occurences: 8(8) P5CS_VIGAC : 177- 212: gifwd NDsLSAllaleLk-ADlLvLLSDveGLYSgPPsdphS kliyt PROB_BACSU : 147- 182: ltfgd NDmLSAlvsg-LihADqLmILTDinGLYDaNPneilS erfdy PROB_CORGL : 155- 190: vnfgd NDrLAAivah-LvsADaLvLLSDvdGLFDkNPtdptA kfise PROB_ECOLI : 149- 184: ikvgd NDnLSAlaai-LagADkLlLLTDqkGLYTaDPrsnpQ aelik PROB_HAEIN : 148- 183: ikvgd NDnLSAlvai-LvqAEqLyLLTDqqGLFDsDPrknpE aklip PROB_SERMA : 149- 184: ikvgd NDnLSAlaai-LagADkLlLLTDqqGLYTaDPrnnpQ aelir PROB_YEAST : 155- 190: ikfgd NDtLSAitsa-LihADyLfLLTDvdCLYTdNPrtnpD ampil YHJ3_YEAST : 150- 185: iefgd NDtLSAitaa-LvgADfLfLLTDvdCLYTdNPrtnpD arpiv E 5: 64.0487 8( 8) G-x-G-G-M-x-[AST]-K-[ILV]-x-A-[AT]-x(2)-A-x-[ENRS]-x-G-[IV]-x-[TV]-[FILV]-[ILV]-x(2)-[AGS]-x(3)-[AEGNQ]-x-[AILV]-[AGILP] Occurences: 8(8) P5CS_VIGAC : 236- 269: dksrv GrGGMtAKVkAAvhAaEaGIpVVItsGfapEnII nvlqg PROB_BACSU : 207- 240: agskv GtGGMkSKLlATqtAlSlGVkVFIgtGsgeQkLA dildg PROB_CORGL : 214- 247: dggkv GtGGMaSKVsAArlAsRsGVpVLLtsAaniGpAL edaqv PROB_ECOLI : 210- 243: svsgl GtGGMsTKLqAAdvAcRaGIdTIIaaGskpGvIG dvmeg PROB_HAEIN : 209- 242: sgtnl GtGGMmTKIiAAdvAtRsGIeTIIapGnrpNvIA dlaye PROB_SERMA : 210- 243: svsgl GtGGMgTKLqAAdvAcRaGIdVVIaaGskpGvVA dvieg PROB_YEAST : 218- 251: sgsdv GtGGMeTKLvAAdlAtNaGVhTLImkSdtpAnIG rivey YHJ3_YEAST : 213- 246: sgsev GtGGMrTKLiAAdlAsNaGIeTIVmkSdrpEyVP kivdy F 6: 63.5487 8( 8) G-x(0,1)-G-G-M-x-[AST]-K-[ILV]-x-A-[AT]-x(2)-A-x-[ENRS]-x-G-[IV]-x-[TV]-[FILV]-[ILV]-x(2)-[AGS]-x(3)-[AEGNQ]-x-[AILV]-[AGILP] Occurences: 8(8) P5CS_VIGAC : 236- 269: dksrv GrGGMtAKVkAAvhAaEaGIpVVItsGfapEnII nvlqg PROB_BACSU : 207- 240: agskv GtGGMkSKLlATqtAlSlGVkVFIgtGsgeQkLA dildg PROB_CORGL : 214- 247: dggkv GtGGMaSKVsAArlAsRsGVpVLLtsAaniGpAL edaqv PROB_ECOLI : 210- 243: svsgl GtGGMsTKLqAAdvAcRaGIdTIIaaGskpGvIG dvmeg PROB_HAEIN : 209- 242: sgtnl GtGGMmTKIiAAdvAtRsGIeTIIapGnrpNvIA dlaye PROB_SERMA : 210- 243: svsgl GtGGMgTKLqAAdvAcRaGIdVVIaaGskpGvVA dvieg PROB_YEAST : 218- 251: sgsdv GtGGMeTKLvAAdlAtNaGVhTLImkSdtpAnIG rivey YHJ3_YEAST : 213- 246: sgsev GtGGMrTKLiAAdlAsNaGIeTIVmkSdrpEyVP kivdy G 7: 58.8787 16( 8) G-x(0,1)-G-x(0,1)-M-x-[AST]-K-[ILV]-x-A-[AT]-x(2)-A-x-[ENRS]-x-G-[IV]-x-[TV]-[FILV]-[ILV]-x(2)-[AGS]-x(3)-[AEGNQ]-x-[AILV]-[AGILP] Occurences: 16(8) P5CS_VIGAC : 236- 269: dksrv GrGgMtAKVkAAvhAaEaGIpVVItsGfapEnII nvlqg P5CS_VIGAC : 238- 269: srvgr G-G-MtAKVkAAvhAaEaGIpVVItsGfapEnII nvlqg PROB_BACSU : 207- 240: agskv GtGgMkSKLlATqtAlSlGVkVFIgtGsgeQkLA dildg PROB_BACSU : 209- 240: skvgt G-G-MkSKLlATqtAlSlGVkVFIgtGsgeQkLA dildg PROB_CORGL : 214- 247: dggkv GtGgMaSKVsAArlAsRsGVpVLLtsAaniGpAL edaqv PROB_CORGL : 216- 247: gkvgt G-G-MaSKVsAArlAsRsGVpVLLtsAaniGpAL edaqv PROB_ECOLI : 210- 243: svsgl GtGgMsTKLqAAdvAcRaGIdTIIaaGskpGvIG dvmeg PROB_ECOLI : 212- 243: sglgt G-G-MsTKLqAAdvAcRaGIdTIIaaGskpGvIG dvmeg PROB_HAEIN : 209- 242: sgtnl GtGgMmTKIiAAdvAtRsGIeTIIapGnrpNvIA dlaye PROB_HAEIN : 211- 242: tnlgt G-G-MmTKIiAAdvAtRsGIeTIIapGnrpNvIA dlaye PROB_SERMA : 210- 243: svsgl GtGgMgTKLqAAdvAcRaGIdVVIaaGskpGvVA dvieg PROB_SERMA : 212- 243: sglgt G-G-MgTKLqAAdvAcRaGIdVVIaaGskpGvVA dvieg PROB_YEAST : 218- 251: sgsdv GtGgMeTKLvAAdlAtNaGVhTLImkSdtpAnIG rivey PROB_YEAST : 220- 251: sdvgt G-G-MeTKLvAAdlAtNaGVhTLImkSdtpAnIG rivey YHJ3_YEAST : 213- 246: sgsev GtGgMrTKLiAAdlAsNaGIeTIVmkSdrpEyVP kivdy YHJ3_YEAST : 215- 246: sevgt G-G-MrTKLiAAdlAsNaGIeTIVmkSdrpEyVP kivdy H 8: 55.7086 8( 8) G-M-x-[AST]-K-[ILV]-x-A-[AT]-x(2)-A-x-[ENRS]-x-G-[IV]-x-[TV]-[FILV]-[ILV]-x(2)-[AGS]-x(3)-[AEGNQ]-x-[AILV]-[AGILP] Occurences: 8(8) P5CS_VIGAC : 239- 269: rvgrg GMtAKVkAAvhAaEaGIpVVItsGfapEnII nvlqg PROB_BACSU : 210- 240: kvgtg GMkSKLlATqtAlSlGVkVFIgtGsgeQkLA dildg PROB_CORGL : 217- 247: kvgtg GMaSKVsAArlAsRsGVpVLLtsAaniGpAL edaqv PROB_ECOLI : 213- 243: glgtg GMsTKLqAAdvAcRaGIdTIIaaGskpGvIG dvmeg PROB_HAEIN : 212- 242: nlgtg GMmTKIiAAdvAtRsGIeTIIapGnrpNvIA dlaye PROB_SERMA : 213- 243: glgtg GMgTKLqAAdvAcRaGIdVVIaaGskpGvVA dvieg PROB_YEAST : 221- 251: dvgtg GMeTKLvAAdlAtNaGVhTLImkSdtpAnIG rivey YHJ3_YEAST : 216- 246: evgtg GMrTKLiAAdlAsNaGIeTIVmkSdrpEyVP kivdy I 9: 55.6076 9( 8) A-x(4,5)-L-x(1,2)-A-[DE]-x-L-x-[IL]-L-[ST]-D-x(2)-[CG]-L-[FY]-[DST]-x-[DNP]-P-x(4)-[ADEQS] Occurences: 9(8) P5CS_VIGAC : 182- 212: ndsls AllaleLk-ADlLvLLSDveGLYSgPPsdphS kliyt PROB_BACSU : 152- 182: ndmls Alvsg-LihADqLmILTDinGLYDaNPneilS erfdy PROB_CORGL : 159- 190: dndrl AaivahLvsADaLvLLSDvdGLFDkNPtdptA kfise PROB_CORGL : 160- 190: ndrla Aivah-LvsADaLvLLSDvdGLFDkNPtdptA kfise PROB_ECOLI : 154- 184: ndnls Alaai-LagADkLlLLTDqkGLYTaDPrsnpQ aelik PROB_HAEIN : 153- 183: ndnls Alvai-LvqAEqLyLLTDqqGLFDsDPrknpE aklip PROB_SERMA : 154- 184: ndnls Alaai-LagADkLlLLTDqqGLYTaDPrnnpQ aelir PROB_YEAST : 160- 190: ndtls Aitsa-LihADyLfLLTDvdCLYTdNPrtnpD ampil YHJ3_YEAST : 155- 185: ndtls Aitaa-LvgADfLfLLTDvdCLYTdNPrtnpD arpiv J 10: 55.6076 8( 8) A-x(3,4)-L-x(2,3)-A-[DE]-x-L-x-[IL]-L-[ST]-D-x(2)-[CG]-L-[FY]-[DST]-x-[DNP]-P-x(4)-[ADEQS] Occurences: 8(8) P5CS_VIGAC : 182- 212: ndsls Alla-LelkADlLvLLSDveGLYSgPPsdphS kliyt PROB_BACSU : 152- 182: ndmls AlvsgLih-ADqLmILTDinGLYDaNPneilS erfdy PROB_CORGL : 160- 190: ndrla AivahLvs-ADaLvLLSDvdGLFDkNPtdptA kfise PROB_ECOLI : 154- 184: ndnls AlaaiLag-ADkLlLLTDqkGLYTaDPrsnpQ aelik PROB_HAEIN : 153- 183: ndnls AlvaiLvq-AEqLyLLTDqqGLFDsDPrknpE aklip PROB_SERMA : 154- 184: ndnls AlaaiLag-ADkLlLLTDqqGLYTaDPrnnpQ aelir PROB_YEAST : 160- 190: ndtls AitsaLih-ADyLfLLTDvdCLYTdNPrtnpD ampil YHJ3_YEAST : 155- 185: ndtls AitaaLvg-ADfLfLLTDvdCLYTdNPrtnpD arpiv K 11: 53.3328 8( 8) G-[DQ]-N-x(1,2)-L-x-A-[IL]-x-[ADS]-x-L-x(2)-[AQ]-x(2)-[LV]-x(2)-[AL]-[QST]-x(3)-[CGT]-x(2)-[DT]-x-[DNR]-[DP] Occurences: 8(8) P5CS_VIGAC : 100- 131: acaav GQNs-LmALyDtLftQldVtsAQllvTdnDfRD kdfrk PROB_BACSU : 145- 177: eeltf GDNdmLsALvSgLihAdqLmiLTdinGlyDaNP neils PROB_CORGL : 153- 185: tgvnf GDNdrLaAIvAhLvsAdaLvlLSdvdGlfDkNP tdpta PROB_ECOLI : 147- 179: aaikv GDNdnLsALaAiLagAdkLllLTdqkGlyTaDP rsnpq PROB_HAEIN : 146- 178: aeikv GDNdnLsALvAiLvqAeqLylLTdqqGlfDsDP rknpe PROB_SERMA : 147- 179: aeikv GDNdnLsALaAiLagAdkLllLTdqqGlyTaDP rnnpq PROB_YEAST : 153- 185: reikf GDNdtLsAItSaLihAdyLflLTdvdClyTdNP rtnpd YHJ3_YEAST : 148- 180: seief GDNdtLsAItAaLvgAdfLflLTdvdClyTdNP rtnpd L 12: 51.9446 8( 8) G-x-G-G-M-x(0,2)-K-x(3,4)-A-x(2)-[AT]-[ACST]-x-[AS]-[GL]-[GIV]-x(2)-[ILV]-[FILV]-x(2)-[AGST]-x(2)-[GIP]-[AEGN]-x(2)-[AGILP] Occurences: 8(8) P5CS_VIGAC : 236- 269: dksrv GrGGMtaKvka-AvhAAeAGIpvVItsGfaPEniI nvlqg PROB_BACSU : 207- 239: agskv GtGGM--KskllAtqTAlSLGvkVFigTgsGEqkL adild PROB_CORGL : 214- 247: dggkv GtGGMasKvsa-ArlASrSGVpvLLtsAanIGpaL edaqv PROB_ECOLI : 210- 243: svsgl GtGGMstKlqa-AdvACrAGIdtIIaaGskPGviG dvmeg PROB_HAEIN : 209- 242: sgtnl GtGGMmtKiia-AdvATrSGIetIIapGnrPNviA dlaye PROB_SERMA : 210- 243: svsgl GtGGMgtKlqa-AdvACrAGIdvVIaaGskPGvvA dvieg PROB_YEAST : 218- 251: sgsdv GtGGMetKlva-AdlATnAGVhtLImkSdtPAniG rivey YHJ3_YEAST : 213- 246: sgsev GtGGMrtKlia-AdlASnAGIetIVmkSdrPEyvP kivdy M 13: 51.5386 8( 8) M-x-[AST]-K-[ILV]-x-A-[AT]-x(2)-A-x-[ENRS]-x-G-[IV]-x-[TV]-[FILV]-[ILV]-x(2)-[AGS]-x(3)-[AEGNQ]-x-[AILV]-[AGILP] Occurences: 8(8) P5CS_VIGAC : 240- 269: vgrgg MtAKVkAAvhAaEaGIpVVItsGfapEnII nvlqg PROB_BACSU : 211- 240: vgtgg MkSKLlATqtAlSlGVkVFIgtGsgeQkLA dildg PROB_CORGL : 218- 247: vgtgg MaSKVsAArlAsRsGVpVLLtsAaniGpAL edaqv PROB_ECOLI : 214- 243: lgtgg MsTKLqAAdvAcRaGIdTIIaaGskpGvIG dvmeg PROB_HAEIN : 213- 242: lgtgg MmTKIiAAdvAtRsGIeTIIapGnrpNvIA dlaye PROB_SERMA : 214- 243: lgtgg MgTKLqAAdvAcRaGIdVVIaaGskpGvVA dvieg PROB_YEAST : 222- 251: vgtgg MeTKLvAAdlAtNaGVhTLImkSdtpAnIG rivey YHJ3_YEAST : 217- 246: vgtgg MrTKLiAAdlAsNaGIeTIVmkSdrpEyVP kivdy N 14: 51.4375 8( 8) L-x(0,2)-A-[DE]-x-L-x-[IL]-L-[ST]-D-x(2)-[CG]-L-[FY]-[DST]-x-[DNP]-P-x(4)-[ADEQS] Occurences: 8(8) P5CS_VIGAC : 188- 212: llale Lk-ADlLvLLSDveGLYSgPPsdphS kliyt PROB_BACSU : 157- 182: alvsg LihADqLmILTDinGLYDaNPneilS erfdy PROB_CORGL : 165- 190: aivah LvsADaLvLLSDvdGLFDkNPtdptA kfise PROB_ECOLI : 159- 184: alaai LagADkLlLLTDqkGLYTaDPrsnpQ aelik PROB_HAEIN : 158- 183: alvai LvqAEqLyLLTDqqGLFDsDPrknpE aklip PROB_SERMA : 159- 184: alaai LagADkLlLLTDqqGLYTaDPrnnpQ aelir PROB_YEAST : 165- 190: aitsa LihADyLfLLTDvdCLYTdNPrtnpD ampil YHJ3_YEAST : 160- 185: aitaa LvgADfLfLLTDvdCLYTdNPrtnpD arpiv O 15: 48.2675 8( 8) A-[DE]-x-L-x-[IL]-L-[ST]-D-x(2)-[CG]-L-[FY]-[DST]-x-[DNP]-P-x(4)-[ADEQS] Occurences: 8(8) P5CS_VIGAC : 190- 212: alelk ADlLvLLSDveGLYSgPPsdphS kliyt PROB_BACSU : 160- 182: sglih ADqLmILTDinGLYDaNPneilS erfdy PROB_CORGL : 168- 190: ahlvs ADaLvLLSDvdGLFDkNPtdptA kfise PROB_ECOLI : 162- 184: ailag ADkLlLLTDqkGLYTaDPrsnpQ aelik PROB_HAEIN : 161- 183: ailvq AEqLyLLTDqqGLFDsDPrknpE aklip PROB_SERMA : 162- 184: ailag ADkLlLLTDqqGLYTaDPrnnpQ aelir PROB_YEAST : 168- 190: salih ADyLfLLTDvdCLYTdNPrtnpD ampil YHJ3_YEAST : 163- 185: aalvg ADfLfLLTDvdCLYTdNPrtnpD arpiv P 16: 47.8600 8( 8) L-S-A-x(4,5)-L-x(1,2)-A-[ADE]-x-[AL]-x(2)-[IL]-x(4)-[CG]-[AL]-x-[DEST]-[ADGS]-x-[PT]-[NRS]-x(3)-[DEQS] Occurences: 8(8) P5CS_VIGAC : 180- 212: wdnds LSAllaleLk-ADlLvlLsdveGLySGpPSdphS kliyt PROB_BACSU : 150- 182: gdndm LSAlvsg-LihADqLmiLtdinGLyDAnPNeilS erfdy PROB_CORGL : 263- 296: pkdnr LSAwkfwaLyaADtAgkIrlddGAvEAvTSggkS llavg PROB_ECOLI : 152- 184: gdndn LSAlaai-LagADkLllLtdqkGLyTAdPRsnpQ aelik PROB_HAEIN : 151- 183: gdndn LSAlvai-LvqAEqLylLtdqqGLfDSdPRknpE aklip PROB_SERMA : 152- 184: gdndn LSAlaai-LagADkLllLtdqqGLyTAdPRnnpQ aelir PROB_YEAST : 158- 190: gdndt LSAitsa-LihADyLflLtdvdCLyTDnPRtnpD ampil YHJ3_YEAST : 153- 185: gdndt LSAitaa-LvgADfLflLtdvdCLyTDnPRtnpD arpiv Q 17: 42.0446 8( 8) L-x(1,2)-A-x(0,1)-D-x-L-x-[AIL]-L-x-D-x(3)-[IL]-x-[DSTV]-x-[DNP]-[EP]-x-[DENST]-x(2)-[ADQS] Occurences: 8(8) P5CS_VIGAC : 188- 212: llale Lk-A-DlLvLLsDvegLySgPPsDphS kliyt PROB_BACSU : 157- 182: alvsg LihA-DqLmILtDingLyDaNPnEilS erfdy PROB_CORGL : 165- 190: aivah LvsA-DaLvLLsDvdgLfDkNPtDptA kfise PROB_ECOLI : 159- 184: alaai LagA-DkLlLLtDqkgLyTaDPrSnpQ aelik PROB_HAEIN : 114- 139: drerf Ln-ArDtLyALlDnhiIpViNEnDavA taeik PROB_SERMA : 159- 184: alaai LagA-DkLlLLtDqqgLyTaDPrNnpQ aelir PROB_YEAST : 165- 190: aitsa LihA-DyLfLLtDvdcLyTdNPrTnpD ampil YHJ3_YEAST : 160- 185: aitaa LvgA-DfLfLLtDvdcLyTdNPrTnpD arpiv R 18: 40.9268 8( 8) L-x-[IL]-L-[ST]-D-x(2)-[CG]-L-[FY]-[DST]-x-[DNP]-P-x(4)-[ADEQS] Occurences: 8(8) P5CS_VIGAC : 193- 212: lkadl LvLLSDveGLYSgPPsdphS kliyt PROB_BACSU : 163- 182: ihadq LmILTDinGLYDaNPneilS erfdy PROB_CORGL : 171- 190: vsada LvLLSDvdGLFDkNPtdptA kfise PROB_ECOLI : 165- 184: agadk LlLLTDqkGLYTaDPrsnpQ aelik PROB_HAEIN : 164- 183: vqaeq LyLLTDqqGLFDsDPrknpE aklip PROB_SERMA : 165- 184: agadk LlLLTDqqGLYTaDPrnnpQ aelir PROB_YEAST : 171- 190: ihady LfLLTDvdCLYTdNPrtnpD ampil YHJ3_YEAST : 166- 185: vgadf LfLLTDvdCLYTdNPrtnpD arpiv S 19: 38.3746 8( 8) A-x(0,1)-D-x-L-x-[AIL]-L-x-D-x(3)-[IL]-x-[DSTV]-x-[DNP]-[EP]-x-[DENST]-x(2)-[ADQS] Occurences: 8(8) P5CS_VIGAC : 190- 212: alelk A-DlLvLLsDvegLySgPPsDphS kliyt PROB_BACSU : 160- 182: sglih A-DqLmILtDingLyDaNPnEilS erfdy PROB_CORGL : 168- 190: ahlvs A-DaLvLLsDvdgLfDkNPtDptA kfise PROB_ECOLI : 162- 184: ailag A-DkLlLLtDqkgLyTaDPrSnpQ aelik PROB_HAEIN : 116- 139: erfln ArDtLyALlDnhiIpViNEnDavA taeik PROB_SERMA : 162- 184: ailag A-DkLlLLtDqqgLyTaDPrNnpQ aelir PROB_YEAST : 168- 190: salih A-DyLfLLtDvdcLyTdNPrTnpD ampil YHJ3_YEAST : 163- 185: aalvg A-DfLfLLtDvdcLyTdNPrTnpD arpiv T 20: 31.3695 8( 8) D-N-D-x-L-[AS]-A-x(4,5)-L-x(1,2)-A Occurences: 8(8) P5CS_VIGAC : 176- 190: sgifw DNDsLSAllaleLk-A dllvl PROB_BACSU : 146- 160: eltfg DNDmLSAlvsg-LihA dqlmi PROB_CORGL : 154- 168: gvnfg DNDrLAAivah-LvsA dalvl PROB_ECOLI : 148- 162: aikvg DNDnLSAlaai-LagA dklll PROB_HAEIN : 147- 161: eikvg DNDnLSAlvai-LvqA eqlyl PROB_SERMA : 148- 162: eikvg DNDnLSAlaai-LagA dklll PROB_YEAST : 154- 168: eikfg DNDtLSAitsa-LihA dylfl YHJ3_YEAST : 149- 163: eiefg DNDtLSAitaa-LvgA dflfl Number of patterns evaluated by Pratt:11386 Total running time: 7 seconds