------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file GLPT PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GLPT.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: GLPT_BACSU 444 GLPT_ECOLI 452 PGTP_SALTY 406 UHPC_ECOLI 439 UHPC_SALTY 442 UHPT_ECOLI 463 UHPT_SALTY 463 Pratt run started at Thu Feb 6 19:34:57 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 33.3604 7( 7) R-G-x(5)-W-N-x(2)-H-N-x-G-G 2: 32.3604 10( 7) R-x(0,2)-G-x(5)-W-N-x(2)-H-N-x-G-G 3: 29.1904 7( 7) G-x(5)-W-N-x(2)-H-N-x-G-G 4: 25.0203 7( 7) W-N-x(2)-H-N-x-G-G 5: 24.0203 7( 7) A-x(3)-A-x-G-x(2)-G-x(0,1)-F-x(1,2)-Y 6: 20.8503 7( 7) I-x(3)-Y-V-x(2)-N-x(3)-W 7: 20.8503 7( 7) N-x(2)-H-N-x-G-G 8: 20.3503 11( 7) L-x(1,2)-G-W-x-S-D 9: 19.8503 7( 7) G-x(1,2)-G-x(3)-Y-x(1,2)-G-x-S 10: 19.8503 7( 7) A-x-G-x(2)-G-x(0,1)-F-x(1,2)-Y 11: 19.8503 8( 7) A-x-G-x-A-x(1,2)-G-x(3,4)-F 12: 19.3503 8( 7) L-x(1,3)-A-G-x(5)-L-x(1,2)-G 13: 18.8503 7( 7) F-x(3)-G-x(0,2)-L-x(3,5)-A-x-V 14: 16.6802 7( 7) G-W-x-S-D 15: 16.6802 7( 7) Y-V-x(2)-N-x(3)-W 16: 16.6802 7( 7) H-N-x-G-G 17: 16.6802 7( 7) I-x-Y-G-x(2)-K 18: 16.1802 7( 7) G-x(3)-Y-x(1,2)-G-x-S 19: 16.1802 8( 7) A-x(3,4)-T-x(3)-G-W 20: 15.6802 8( 7) F-x(1,2)-Y-x(1,2)-G-x-S Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 91.8977 7( 7) I-[FL]-x(2)-Y-V-[LV]-x-N-x(2)-[AIL]-W-x-[IL]-[ACS]-[FIL]-[ACSV]-x-[IV]-[FL]-[LV]-Y-[FLMV]-[LV]-R-x-[AG]-[IMV]-x-[DQS]-W-x-[NPT]-x-Y-x(2)-[EQT]-x(3)-[FLV]-[ADS] B 2: 84.5342 7( 7) I-[AT]-Y-G-[FIV]-[GS]-K-x-[ILV]-x-[GS]-x(2)-[AS]-D-x(2)-[NS]-[APT]-[KR]-x-F-[LM]-[AGP]-x(2)-L-[FIV]-[AL]-[ACST]-[AG]-[AIV]-x(2)-[ILV]-x-[FLM]-[GSV] C 3: 84.4596 7( 7) Y-V-[LV]-x-N-x(2)-[AIL]-W-x-[IL]-[ACS]-[FIL]-[ACSV]-x-[IV]-[FL]-[LV]-Y-[FLMV]-[LV]-R-x-[AG]-[IMV]-x-[DQS]-W-x-[NPT]-x-Y-x(2)-[EQT]-x(3)-[FLV]-[ADS] D 4: 62.5518 7( 7) R-G-x(3)-[AGS]-[FILV]-W-N-x-[AS]-H-N-[ILV]-G-G-[AG]-[GIL]-[AILPV]-[AP]-[GILP]-[ILV]-x(3)-[AGV] E 5: 61.5518 10( 7) R-x(0,2)-G-x(3)-[AGS]-[FILV]-W-N-x-[AS]-H-N-[ILV]-G-G-[AG]-[GIL]-[AILPV]-[AP]-[GILP]-[ILV]-x(3)-[AGV] F 6: 58.3817 7( 7) G-x(3)-[AGS]-[FILV]-W-N-x-[AS]-H-N-[ILV]-G-G-[AG]-[GIL]-[AILPV]-[AP]-[GILP]-[ILV]-x(3)-[AGV] G 7: 49.6939 7( 7) A-[AIV]-[AG]-x-A-[ADTV]-G-[FIL]-x-G-x(0,1)-F-x(1,2)-Y-[IL]-x-[AG]-[ADS]-x(2)-[AG]-x(2)-[GIL] H 8: 49.3618 7( 7) W-N-x-[AS]-H-N-[ILV]-G-G-[AG]-[GIL]-[AILPV]-[AP]-[GILP]-[ILV]-x(3)-[AGV] I 9: 45.1918 7( 7) N-x-[AS]-H-N-[ILV]-G-G-[AG]-[GIL]-[AILPV]-[AP]-[GILP]-[ILV]-x(3)-[AGV] J 10: 39.6883 7( 7) A-[ADTV]-G-[FIL]-x-G-x(0,1)-F-x(1,2)-Y-[IL]-x-[AG]-[ADS]-x(2)-[AG]-x(2)-[GIL] K 11: 37.8426 7( 7) H-N-[ILV]-G-G-[AG]-[GIL]-[AILPV]-[AP]-[GILP]-[ILV]-x(3)-[AGV] L 12: 35.4173 7( 7) A-[AIV]-G-[ASTV]-A-x(1,2)-G-x(3,4)-F-x(3)-[GIV]-x-[GS]-x(2)-[AGIL]-x-[APT] M 13: 33.3115 7( 7) G-x(1,2)-G-x-[FM]-[AGS]-Y-x(1,2)-G-[ADG]-S-x(4)-[AGLP]-[FIL] N 14: 29.6414 7( 7) G-x-[FM]-[AGS]-Y-x(1,2)-G-[ADG]-S-x(4)-[AGLP]-[FIL] O 15: 27.3309 7( 7) L-x(1,3)-A-G-x-[AGLP]-[GS]-[DTV]-x-L-x(1,2)-G P 16: 23.2203 8( 7) F-x(1,2)-Y-x(1,2)-G-[ADG]-S-x(4)-[AGLP]-[FIL] Q 17: 21.6014 7( 7) G-x(1,2)-G-x-[FM]-[AGS]-Y-x(1,2)-G R 18: 20.3503 11( 7) L-x(1,2)-G-W-x-S-D S 19: 19.3593 8( 7) A-x(3,4)-T-x(3)-G-W-x-[AS] T 20: 18.8503 7( 7) F-x(3)-G-x(0,2)-L-x(3,5)-A-x-V Best patterns with alignements: fitness hits(seqs) Pattern A 1: 91.8977 7( 7) I-[FL]-x(2)-Y-V-[LV]-x-N-x(2)-[AIL]-W-x-[IL]-[ACS]-[FIL]-[ACSV]-x-[IV]-[FL]-[LV]-Y-[FLMV]-[LV]-R-x-[AG]-[IMV]-x-[DQS]-W-x-[NPT]-x-Y-x(2)-[EQT]-x(3)-[FLV]-[ADS] Occurences: 7(7) GLPT_BACSU : 244- 287: lttke ILfqYVLnNkfLWyIAFAnVFVYFVRyGVvDWaPtYltEakgFS pedsr GLPT_ECOLI : 244- 287: ltakq IFmqYVLpNklLWyIAIAnVFVYLLRyGIlDWsPtYlkEvkhFA ldkss PGTP_SALTY : 247- 290: msawq IFctYVVrNknAWyISLVdVFVYMVRfGMiSWlPiYllTvkhFS keqms UHPC_ECOLI : 241- 284: ltrke ILtkYVLlNpyIWlLSFCyVLVYVVRaAInDWgNlYmsEtlgVD lvtan UHPC_SALTY : 241- 284: lsrke ILakYVLlNpyIWlLSLCyVLVYVVRaAInDWgNlYmsEtlgVD lvtan UHPT_ECOLI : 250- 293: mtkwq IFveYVLkNkvIWlLCFAnIFLYVVRiGIdQWsTvYafQelkLS kavai UHPT_SALTY : 250- 293: mtkwq IFveYVLkNkvIWlLCFSnIFLYVVRiGIdQWsTvYafQelkLS kevai B 2: 84.5342 7( 7) I-[AT]-Y-G-[FIV]-[GS]-K-x-[ILV]-x-[GS]-x(2)-[AS]-D-x(2)-[NS]-[APT]-[KR]-x-F-[LM]-[AGP]-x(2)-L-[FIV]-[AL]-[ACST]-[AG]-[AIV]-x(2)-[ILV]-x-[FLM]-[GSV] Occurences: 7(7) GLPT_BACSU : 74- 111: laavs IAYGFSKfImGmvSDrcNPRyFLAtgLFLSAIvnIlFV smpwv GLPT_ECOLI : 74- 111: lsgis IAYGFSKfImGsvSDrsNPRvFLPagLILAAAvmLfMG fvpwa PGTP_SALTY : 75- 112: sscml IAYGISKgVmSslADkaSPKvFMAcgLVLCAIvnVgLG fssaf UHPC_ECOLI : 76- 113: atlfy ITYGVSKfVsGivSDrsNARyFMGigLIATGIinIlFG fstsl UHPC_SALTY : 76- 113: atlfy ITYGVSKfVsGivSDrsNARyFMGigLIATGVvnIlFG fstsl UHPT_ECOLI : 76- 113: glgfs ITYGVGKtLvSyyADgkNTKqFLPfmLILSAIcmLgFS asmgs UHPT_SALTY : 76- 113: glgfs ITYGVGKtLvSyyADgkNTKqFLPfmLILSAIcmLgFS asmga C 3: 84.4596 7( 7) Y-V-[LV]-x-N-x(2)-[AIL]-W-x-[IL]-[ACS]-[FIL]-[ACSV]-x-[IV]-[FL]-[LV]-Y-[FLMV]-[LV]-R-x-[AG]-[IMV]-x-[DQS]-W-x-[NPT]-x-Y-x(2)-[EQT]-x(3)-[FLV]-[ADS] Occurences: 7(7) GLPT_BACSU : 248- 287: eilfq YVLnNkfLWyIAFAnVFVYFVRyGVvDWaPtYltEakgFS pedsr GLPT_ECOLI : 248- 287: qifmq YVLpNklLWyIAIAnVFVYLLRyGIlDWsPtYlkEvkhFA ldkss PGTP_SALTY : 251- 290: qifct YVVrNknAWyISLVdVFVYMVRfGMiSWlPiYllTvkhFS keqms UHPC_ECOLI : 245- 284: eiltk YVLlNpyIWlLSFCyVLVYVVRaAInDWgNlYmsEtlgVD lvtan UHPC_SALTY : 245- 284: eilak YVLlNpyIWlLSLCyVLVYVVRaAInDWgNlYmsEtlgVD lvtan UHPT_ECOLI : 254- 293: qifve YVLkNkvIWlLCFAnIFLYVVRiGIdQWsTvYafQelkLS kavai UHPT_SALTY : 254- 293: qifve YVLkNkvIWlLCFSnIFLYVVRiGIdQWsTvYafQelkLS kevai D 4: 62.5518 7( 7) R-G-x(3)-[AGS]-[FILV]-W-N-x-[AS]-H-N-[ILV]-G-G-[AG]-[GIL]-[AILPV]-[AP]-[GILP]-[ILV]-x(3)-[AGV] Occurences: 7(7) GLPT_BACSU : 154- 179: fsise RGtkmSIWNvAHNIGGGILAPLvtlG iamfv GLPT_ECOLI : 154- 179: wsqke RGgivSVWNcAHNVGGGIPPLLfllG mawfn PGTP_SALTY : 150- 175: vprre RGrvgAFWNiSHNVGGGIVAPIvgaA failg UHPC_ECOLI : 152- 177: ysrte RGgwwALWNtAHNVGGALIPIVmaaA alhyg UHPC_SALTY : 152- 177: ysrte RGgwwALWNtAHNVGGALIPLVmaaV alhyg UHPT_ECOLI : 157- 182: tprrk RGtflGFWNiSHNLGGAGAAGValfG anylf UHPT_SALTY : 157- 182: tprrk RGtflGFWNiSHNLGGAGAAGValfG anylf E 5: 61.5518 10( 7) R-x(0,2)-G-x(3)-[AGS]-[FILV]-W-N-x-[AS]-H-N-[ILV]-G-G-[AG]-[GIL]-[AILPV]-[AP]-[GILP]-[ILV]-x(3)-[AGV] Occurences: 10(7) GLPT_BACSU : 154- 179: fsise R--GtkmSIWNvAHNIGGGILAPLvtlG iamfv GLPT_ECOLI : 154- 179: wsqke R--GgivSVWNcAHNVGGGIPPLLfllG mawfn PGTP_SALTY : 148- 175: klvpr RerGrvgAFWNiSHNVGGGIVAPIvgaA failg PGTP_SALTY : 150- 175: vprre R--GrvgAFWNiSHNVGGGIVAPIvgaA failg UHPC_ECOLI : 152- 177: ysrte R--GgwwALWNtAHNVGGALIPIVmaaA alhyg UHPC_SALTY : 152- 177: ysrte R--GgwwALWNtAHNVGGALIPLVmaaV alhyg UHPT_ECOLI : 155- 182: kwtpr RkrGtflGFWNiSHNLGGAGAAGValfG anylf UHPT_ECOLI : 157- 182: tprrk R--GtflGFWNiSHNLGGAGAAGValfG anylf UHPT_SALTY : 155- 182: kwtpr RkrGtflGFWNiSHNLGGAGAAGValfG anylf UHPT_SALTY : 157- 182: tprrk R--GtflGFWNiSHNLGGAGAAGValfG anylf F 6: 58.3817 7( 7) G-x(3)-[AGS]-[FILV]-W-N-x-[AS]-H-N-[ILV]-G-G-[AG]-[GIL]-[AILPV]-[AP]-[GILP]-[ILV]-x(3)-[AGV] Occurences: 7(7) GLPT_BACSU : 155- 179: siser GtkmSIWNvAHNIGGGILAPLvtlG iamfv GLPT_ECOLI : 155- 179: sqker GgivSVWNcAHNVGGGIPPLLfllG mawfn PGTP_SALTY : 151- 175: prrer GrvgAFWNiSHNVGGGIVAPIvgaA failg UHPC_ECOLI : 153- 177: srter GgwwALWNtAHNVGGALIPIVmaaA alhyg UHPC_SALTY : 153- 177: srter GgwwALWNtAHNVGGALIPLVmaaV alhyg UHPT_ECOLI : 158- 182: prrkr GtflGFWNiSHNLGGAGAAGValfG anylf UHPT_SALTY : 158- 182: prrkr GtflGFWNiSHNLGGAGAAGValfG anylf G 7: 49.6939 7( 7) A-[AIV]-[AG]-x-A-[ADTV]-G-[FIL]-x-G-x(0,1)-F-x(1,2)-Y-[IL]-x-[AG]-[ADS]-x(2)-[AG]-x(2)-[GIL] Occurences: 7(7) GLPT_BACSU : 380- 403: lapkk AAGtAAGLtGfFg-YIgGSafAnaI mgfvv GLPT_BACSU : 380- 403: lapkk AAGtAAGLtG-FfgYIgGSafAnaI mgfvv GLPT_ECOLI : 380- 403: lapkk AAGtAAGFtGlFg-YLgGSvaAsaI vgytv PGTP_SALTY : 381- 404: ivpsf AVGsAVGLrG-FmsYIfGAslGtsL fc UHPC_ECOLI : 377- 400: cshke AAGaATGFvGlFa-YLgASlaGwpL akvld UHPC_SALTY : 377- 400: cshke AAGaATGFvGlFa-YLgASlsGwpL akvle UHPT_ECOLI : 383- 406: fvpkk AIGaADGIkGtFa-YLiGDsfAklG lgmia UHPT_SALTY : 383- 406: fvpkk AIAlADGIkGtFa-YLiGDsfAklG lgmia H 8: 49.3618 7( 7) W-N-x-[AS]-H-N-[ILV]-G-G-[AG]-[GIL]-[AILPV]-[AP]-[GILP]-[ILV]-x(3)-[AGV] Occurences: 7(7) GLPT_BACSU : 161- 179: tkmsi WNvAHNIGGGILAPLvtlG iamfv GLPT_ECOLI : 161- 179: givsv WNcAHNVGGGIPPLLfllG mawfn PGTP_SALTY : 157- 175: rvgaf WNiSHNVGGGIVAPIvgaA failg UHPC_ECOLI : 159- 177: gwwal WNtAHNVGGALIPIVmaaA alhyg UHPC_SALTY : 159- 177: gwwal WNtAHNVGGALIPLVmaaV alhyg UHPT_ECOLI : 164- 182: tflgf WNiSHNLGGAGAAGValfG anylf UHPT_SALTY : 164- 182: tflgf WNiSHNLGGAGAAGValfG anylf I 9: 45.1918 7( 7) N-x-[AS]-H-N-[ILV]-G-G-[AG]-[GIL]-[AILPV]-[AP]-[GILP]-[ILV]-x(3)-[AGV] Occurences: 7(7) GLPT_BACSU : 162- 179: kmsiw NvAHNIGGGILAPLvtlG iamfv GLPT_ECOLI : 162- 179: ivsvw NcAHNVGGGIPPLLfllG mawfn PGTP_SALTY : 158- 175: vgafw NiSHNVGGGIVAPIvgaA failg UHPC_ECOLI : 160- 177: wwalw NtAHNVGGALIPIVmaaA alhyg UHPC_SALTY : 160- 177: wwalw NtAHNVGGALIPLVmaaV alhyg UHPT_ECOLI : 165- 182: flgfw NiSHNLGGAGAAGValfG anylf UHPT_SALTY : 165- 182: flgfw NiSHNLGGAGAAGValfG anylf J 10: 39.6883 7( 7) A-[ADTV]-G-[FIL]-x-G-x(0,1)-F-x(1,2)-Y-[IL]-x-[AG]-[ADS]-x(2)-[AG]-x(2)-[GIL] Occurences: 7(7) GLPT_BACSU : 384- 403: kaagt AAGLtGfFg-YIgGSafAnaI mgfvv GLPT_BACSU : 384- 403: kaagt AAGLtG-FfgYIgGSafAnaI mgfvv GLPT_ECOLI : 384- 403: kaagt AAGFtGlFg-YLgGSvaAsaI vgytv PGTP_SALTY : 385- 404: favgs AVGLrG-FmsYIfGAslGtsL fc UHPC_ECOLI : 381- 400: eaaga ATGFvGlFa-YLgASlaGwpL akvld UHPC_SALTY : 381- 400: eaaga ATGFvGlFa-YLgASlsGwpL akvle UHPT_ECOLI : 387- 406: kaiga ADGIkGtFa-YLiGDsfAklG lgmia UHPT_SALTY : 387- 406: kaial ADGIkGtFa-YLiGDsfAklG lgmia K 11: 37.8426 7( 7) H-N-[ILV]-G-G-[AG]-[GIL]-[AILPV]-[AP]-[GILP]-[ILV]-x(3)-[AGV] Occurences: 7(7) GLPT_BACSU : 165- 179: iwnva HNIGGGILAPLvtlG iamfv GLPT_ECOLI : 165- 179: vwnca HNVGGGIPPLLfllG mawfn PGTP_SALTY : 161- 175: fwnis HNVGGGIVAPIvgaA failg UHPC_ECOLI : 163- 177: lwnta HNVGGALIPIVmaaA alhyg UHPC_SALTY : 163- 177: lwnta HNVGGALIPLVmaaV alhyg UHPT_ECOLI : 168- 182: fwnis HNLGGAGAAGValfG anylf UHPT_SALTY : 168- 182: fwnis HNLGGAGAAGValfG anylf L 12: 35.4173 7( 7) A-[AIV]-G-[ASTV]-A-x(1,2)-G-x(3,4)-F-x(3)-[GIV]-x-[GS]-x(2)-[AGIL]-x-[APT] Occurences: 7(7) GLPT_BACSU : 380- 402: lapkk AAGTAa-GltgfFgyiGgSafAnA imgfv GLPT_ECOLI : 380- 402: lapkk AAGTAa-GftglFgylGgSvaAsA ivgyt PGTP_SALTY : 381- 402: ivpsf AVGSAv-Glrg-FmsyIfGasLgT slfc UHPC_ECOLI : 377- 399: cshke AAGAAt-GfvglFaylGaSlaGwP lakvl UHPC_SALTY : 377- 399: cshke AAGAAt-GfvglFaylGaSlsGwP lakvl UHPT_ECOLI : 175- 198: lggag AAGVAlfGanylFdghViGmfIfP siial UHPT_SALTY : 175- 198: lggag AAGVAlfGanylFdghViGmfIfP siial M 13: 33.3115 7( 7) G-x(1,2)-G-x-[FM]-[AGS]-Y-x(1,2)-G-[ADG]-S-x(4)-[AGLP]-[FIL] Occurences: 7(7) GLPT_BACSU : 386- 403: agtaa GltGfFGYi-GGSafanAI mgfvv GLPT_ECOLI : 386- 403: agtaa GftGlFGYl-GGSvaasAI vgytv PGTP_SALTY : 387- 405: vgsav GlrGfMSYifGASlgtsLF c UHPC_ECOLI : 383- 400: agaat GfvGlFAYl-GASlagwPL akvld UHPC_SALTY : 383- 400: agaat GfvGlFAYl-GASlsgwPL akvle UHPT_ECOLI : 389- 407: igaad GikGtFAYliGDSfaklGL gmiad UHPT_SALTY : 389- 407: ialad GikGtFAYliGDSfaklGL gmiad N 14: 29.6414 7( 7) G-x-[FM]-[AGS]-Y-x(1,2)-G-[ADG]-S-x(4)-[AGLP]-[FIL] Occurences: 7(7) GLPT_BACSU : 389- 403: aaglt GfFGYi-GGSafanAI mgfvv GLPT_ECOLI : 389- 403: aagft GlFGYl-GGSvaasAI vgytv PGTP_SALTY : 390- 405: avglr GfMSYifGASlgtsLF c UHPC_ECOLI : 386- 400: atgfv GlFAYl-GASlagwPL akvld UHPC_SALTY : 386- 400: atgfv GlFAYl-GASlsgwPL akvle UHPT_ECOLI : 392- 407: adgik GtFAYliGDSfaklGL gmiad UHPT_SALTY : 392- 407: adgik GtFAYliGDSfaklGL gmiad O 15: 27.3309 7( 7) L-x(1,3)-A-G-x-[AGLP]-[GS]-[DTV]-x-L-x(1,2)-G Occurences: 7(7) GLPT_BACSU : 297- 310: rwsyf LyeyAGiPGTiLc-G wisdr GLPT_ECOLI : 297- 310: swayf LyeyAGiPGTlLc-G wmsdk PGTP_SALTY : 310- 322: aipst Ll--AGwLSDkLfkG rrmpl UHPC_ECOLI : 304- 316: gfiga Lv--AGwGSDkLfnG nrgpm UHPC_SALTY : 304- 316: gfiga Lv--AGwGSDkLfnG nrgpm UHPT_ECOLI : 170- 182: nishn Lgg-AGaAGVaLf-G anylf UHPT_SALTY : 170- 182: nishn Lgg-AGaAGVaLf-G anylf P 16: 23.2203 8( 7) F-x(1,2)-Y-x(1,2)-G-[ADG]-S-x(4)-[AGLP]-[FIL] Occurences: 8(7) GLPT_BACSU : 390- 403: agltg FfgYi-GGSafanAI mgfvv GLPT_BACSU : 391- 403: gltgf Fg-Yi-GGSafanAI mgfvv GLPT_ECOLI : 391- 403: gftgl Fg-Yl-GGSvaasAI vgytv PGTP_SALTY : 391- 405: vglrg FmsYifGASlgtsLF c UHPC_ECOLI : 388- 400: gfvgl Fa-Yl-GASlagwPL akvld UHPC_SALTY : 388- 400: gfvgl Fa-Yl-GASlsgwPL akvle UHPT_ECOLI : 394- 407: gikgt Fa-YliGDSfaklGL gmiad UHPT_SALTY : 394- 407: gikgt Fa-YliGDSfaklGL gmiad Q 17: 21.6014 7( 7) G-x(1,2)-G-x-[FM]-[AGS]-Y-x(1,2)-G Occurences: 7(7) GLPT_BACSU : 386- 395: agtaa GltGfFGYi-G gsafa GLPT_ECOLI : 386- 395: agtaa GftGlFGYl-G gsvaa PGTP_SALTY : 387- 397: vgsav GlrGfMSYifG aslgt UHPC_ECOLI : 383- 392: agaat GfvGlFAYl-G aslag UHPC_SALTY : 383- 392: agaat GfvGlFAYl-G aslsg UHPT_ECOLI : 389- 399: igaad GikGtFAYliG dsfak UHPT_SALTY : 389- 399: ialad GikGtFAYliG dsfak R 18: 20.3503 11( 7) L-x(1,2)-G-W-x-S-D Occurences: 11(7) GLPT_BACSU : 308- 314: ipgti Lc-GWiSD rffks GLPT_ECOLI : 307- 314: gipgt LlcGWmSD kvfrg GLPT_ECOLI : 308- 314: ipgtl Lc-GWmSD kvfrg PGTP_SALTY : 310- 317: aipst LlaGWlSD klfkg PGTP_SALTY : 311- 317: ipstl La-GWlSD klfkg UHPC_ECOLI : 304- 311: gfiga LvaGWgSD klfng UHPC_SALTY : 304- 311: gfiga LvaGWgSD klfng UHPT_ECOLI : 313- 320: alvgt LlwGWlSD langr UHPT_ECOLI : 314- 320: lvgtl Lw-GWlSD langr UHPT_SALTY : 313- 320: alvgt LlwGWlSD langr UHPT_SALTY : 314- 320: lvgtl Lw-GWlSD langr S 19: 19.3593 8( 7) A-x(3,4)-T-x(3)-G-W-x-[AS] Occurences: 8(7) GLPT_BACSU : 301- 313: flyey AgipgTilcGWiS drffk GLPT_ECOLI : 301- 313: flyey AgipgTllcGWmS dkvfr PGTP_SALTY : 304- 316: lffew AaipsTllaGWlS dklfk PGTP_SALTY : 305- 316: ffewa Aips-TllaGWlS dklfk UHPC_ECOLI : 145- 157: arllt AwysrTergGWwA lwnta UHPC_SALTY : 145- 157: arllt AwysrTergGWwA lwnta UHPT_ECOLI : 308- 319: lfeag Alvg-TllwGWlS dlang UHPT_SALTY : 308- 319: lfevg Alvg-TllwGWlS dlang T 20: 18.8503 7( 7) F-x(3)-G-x(0,2)-L-x(3,5)-A-x-V Occurences: 7(7) GLPT_BACSU : 95- 106: cnpry FlatG--Lfls--AiV nilfv GLPT_ECOLI : 95- 106: snprv FlpaG--Lila--AaV mlfmg PGTP_SALTY : 96- 107: aspkv FmacG--Lvlc--AiV nvglg UHPC_ECOLI : 388- 403: gfvgl FaylGasLagwplAkV ldtwh UHPC_SALTY : 388- 403: gfvgl FaylGasLsgwplAkV leiwh UHPT_ECOLI : 362- 376: lfalg FlvfGpqLligv-AaV gfvpk UHPT_SALTY : 362- 376: lfalg FlvfGpqLligv-AaV gfvpk Number of patterns evaluated by Pratt:16378 Total running time: 10 seconds