------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 24 sequences from file GHMP_KINASES_ATP PATTERN CONSERVATION: CM: min Nr of Seqs to Match 24 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GHMP_KINASES_ATP.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ERG8_YEAST 424 GAL1_BACSU 390 GAL1_ECOLI 381 GAL1_HAEIN 384 GAL1_KLULA 503 GAL1_LACHE 388 GAL1_SALTY 380 GAL1_STRLI 397 GAL1_YEAST 527 GAL2_HUMAN 458 KHSE_BACSU 308 KHSE_BRELA 308 KHSE_CORGL 308 KHSE_ECOLI 310 KHSE_FREDI 307 KHSE_HAEIN 314 KHSE_MYCLE 314 KHSE_SERMA 309 KHSE_YEAST 356 KIME_ARATH 378 KIME_HUMAN 396 KIME_RAT 395 KIME_SCHPO 404 KIME_YEAST 443 Pratt run started at Thu Feb 6 19:34:18 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 24.0203 27( 24) P-x(2,3)-G-L-x-S-S-x(0,1)-A 2: 20.3503 24( 24) G-L-x-S-S-x(0,1)-A 3: 16.1802 24( 24) L-x-S-S-x(0,1)-A 4: 15.1802 26( 24) G-x(0,1)-S-S-x(0,2)-A 5: 12.5102 34( 24) S-S-A 6: 12.0102 29( 24) G-x(1,2)-S-S 7: 12.0102 29( 24) G-x(0,1)-S-S 8: 12.0102 39( 24) G-x(3)-S-x(0,1)-A 9: 12.0102 33( 24) G-x(2,3)-S-x-A 10: 12.0102 26( 24) P-x(3)-G-x(4,5)-A 11: 12.0102 29( 24) P-x(3)-G-x(1,2)-S 12: 11.5102 56( 24) G-x(1,2)-G-x(4,5)-A 13: 11.5102 48( 24) L-x(2,3)-A-x(0,1)-G 14: 11.5102 38( 24) G-x(0,1)-L-x(3,4)-A 15: 11.5102 37( 24) P-x(3,4)-L-x(0,1)-S 16: 11.5102 40( 24) L-x(2,3)-S-x(0,1)-A 17: 11.5102 36( 24) G-x(2,3)-L-x(0,1)-S 18: 11.5102 39( 24) G-L-x(2,4)-A 19: 11.0102 55( 24) L-x(1,3)-A-x(4,5)-A 20: 11.0102 64( 24) L-x(0,2)-A-x(0,1)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 27.2008 27( 24) P-x(2,3)-G-L-[GS]-S-S-x(0,1)-A B 2: 23.5308 24( 24) G-L-[GS]-S-S-x(0,1)-A C 3: 22.0723 27( 24) P-x(3,4)-L-x(0,1)-S-S-[AGS]-[ACGST]-x(4)-[AGLPV] D 4: 20.3503 24( 24) G-L-x-S-S-x(0,1)-A E 5: 19.3607 24( 24) L-[GS]-S-S-x(0,1)-A F 6: 18.4023 25( 24) G-x(1,2)-S-S-[AGS]-[ACGST]-x(4)-[AGLPV] G 7: 16.8319 26( 24) P-x-[AGS]-x-G-x(1,2)-S-x-[AGNS] H 8: 16.2735 26( 24) G-x(0,1)-S-S-[AGS]-[ACGNST] I 9: 15.1802 26( 24) G-x(0,1)-S-S-x(0,2)-A J 10: 14.6035 24( 24) P-x-[AGS]-x-G-x(4,5)-A K 11: 14.2003 31( 24) G-x(2,3)-S-[AGST]-A L 12: 12.5102 34( 24) S-S-A M 13: 12.0102 39( 24) G-x(3)-S-x(0,1)-A N 14: 11.5102 56( 24) G-x(1,2)-G-x(4,5)-A O 15: 11.5102 48( 24) L-x(2,3)-A-x(0,1)-G P 16: 11.5102 38( 24) G-x(0,1)-L-x(3,4)-A Q 17: 11.5102 37( 24) P-x(3,4)-L-x(0,1)-S R 18: 11.5102 40( 24) L-x(2,3)-S-x(0,1)-A S 19: 11.5102 36( 24) G-x(2,3)-L-x(0,1)-S T 20: 11.5102 39( 24) G-L-x(2,4)-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 27.2008 27( 24) P-x(2,3)-G-L-[GS]-S-S-x(0,1)-A Occurences: 27(24) ERG8_YEAST : 151- 159: rieev Pkt-GLGSS-A glvtv GAL1_BACSU : 122- 131: fsgni PngaGLSSS-A siell GAL1_ECOLI : 121- 130: isgnv PqgaGLSSS-A sleva GAL1_HAEIN : 121- 130: isgnv PlssGLSSS-A aleva GAL1_HAEIN : 121- 131: isgnv PlssGLSSSaA levav GAL1_KLULA : 151- 160: vkgdi PsggGLSSS-A afica GAL1_KLULA : 151- 161: vkgdi PsggGLSSSaA ficav GAL1_LACHE : 123- 132: ieanl PsgsGLSSS-A aieml GAL1_LACHE : 123- 133: ieanl PsgsGLSSSaA iemlm GAL1_SALTY : 121- 130: visnv PqgaGLSSS-A sleva GAL1_STRLI : 122- 131: lastv PsgaGLSSS-A alevr GAL1_STRLI : 122- 132: lastv PsgaGLSSSaA levrp GAL1_YEAST : 162- 171: cegdv PtgsGLSSS-A afica GAL1_YEAST : 162- 172: cegdv PtgsGLSSSaA ficav GAL2_HUMAN : 139- 149: vdgni PpssGLSSSsA lvcca GAL2_HUMAN : 140- 149: dgnip Pss-GLSSSsA lvcca KHSE_BACSU : 90- 99: vwsdi PlarGLGSS-A aaiva KHSE_BACSU : 90- 100: vwsdi PlarGLGSSaA aivaa KHSE_BRELA : 94- 103: chnni PqsrGLGSS-A aaava KHSE_BRELA : 94- 104: chnni PqsrGLGSSaA aavag KHSE_CORGL : 94- 103: chnni PqsrGLGSS-A aaava KHSE_CORGL : 94- 104: chnni PqsrGLGSSaA aavag KHSE_ECOLI : 91- 100: leknm PigsGLGSS-A csvva KHSE_FREDI : 92- 101: idlgv PlarGLGSS-A taivg KHSE_HAEIN : 96- 105: leknm PigsGLGSS-A csiva KHSE_MYCLE : 95- 104: crnai PhsrGLGSS-A aavvg KHSE_MYCLE : 95- 105: crnai PhsrGLGSSaA avvgg KHSE_SERMA : 91- 100: leknm PigsGLGSS-A csvva KHSE_YEAST : 103- 113: vsnpi PlgrGLGSSgA avvag KIME_ARATH : 141- 150: insel PygsGLGSS-A alcva KIME_ARATH : 141- 151: insel PygsGLGSSaA lcval KIME_HUMAN : 138- 147: vwsel PpgaGLGSS-A aysvc KIME_HUMAN : 138- 148: vwsel PpgaGLGSSaA ysvcl KIME_HUMAN : 139- 147: wselp Pga-GLGSS-A aysvc KIME_HUMAN : 139- 148: wselp Pga-GLGSSaA ysvcl KIME_RAT : 138- 147: vwsel PpgaGLGSS-A aysvc KIME_RAT : 138- 148: vwsel PpgaGLGSSaA ysvcv KIME_RAT : 139- 147: wselp Pga-GLGSS-A aysvc KIME_RAT : 139- 148: wselp Pga-GLGSSaA ysvcv KIME_SCHPO : 133- 142: issqv PlgaGLGSS-A tisvv KIME_YEAST : 141- 150: lkstl PigaGLGSS-A sisvs B 2: 23.5308 24( 24) G-L-[GS]-S-S-x(0,1)-A Occurences: 24(24) ERG8_YEAST : 154- 159: evpkt GLGSS-A glvtv GAL1_BACSU : 126- 131: ipnga GLSSS-A siell GAL1_ECOLI : 125- 130: vpqga GLSSS-A sleva GAL1_HAEIN : 125- 130: vplss GLSSS-A aleva GAL1_HAEIN : 125- 131: vplss GLSSSaA levav GAL1_KLULA : 155- 160: ipsgg GLSSS-A afica GAL1_KLULA : 155- 161: ipsgg GLSSSaA ficav GAL1_LACHE : 127- 132: lpsgs GLSSS-A aieml GAL1_LACHE : 127- 133: lpsgs GLSSSaA iemlm GAL1_SALTY : 125- 130: vpqga GLSSS-A sleva GAL1_STRLI : 126- 131: vpsga GLSSS-A alevr GAL1_STRLI : 126- 132: vpsga GLSSSaA levrp GAL1_YEAST : 166- 171: vptgs GLSSS-A afica GAL1_YEAST : 166- 172: vptgs GLSSSaA ficav GAL2_HUMAN : 143- 149: ippss GLSSSsA lvcca KHSE_BACSU : 94- 99: iplar GLGSS-A aaiva KHSE_BACSU : 94- 100: iplar GLGSSaA aivaa KHSE_BRELA : 98- 103: ipqsr GLGSS-A aaava KHSE_BRELA : 98- 104: ipqsr GLGSSaA aavag KHSE_CORGL : 98- 103: ipqsr GLGSS-A aaava KHSE_CORGL : 98- 104: ipqsr GLGSSaA aavag KHSE_ECOLI : 95- 100: mpigs GLGSS-A csvva KHSE_FREDI : 96- 101: vplar GLGSS-A taivg KHSE_HAEIN : 100- 105: mpigs GLGSS-A csiva KHSE_MYCLE : 99- 104: iphsr GLGSS-A aavvg KHSE_MYCLE : 99- 105: iphsr GLGSSaA avvgg KHSE_SERMA : 95- 100: mpigs GLGSS-A csvva KHSE_YEAST : 107- 113: iplgr GLGSSgA avvag KIME_ARATH : 145- 150: lpygs GLGSS-A alcva KIME_ARATH : 145- 151: lpygs GLGSSaA lcval KIME_HUMAN : 142- 147: lppga GLGSS-A aysvc KIME_HUMAN : 142- 148: lppga GLGSSaA ysvcl KIME_RAT : 142- 147: lppga GLGSS-A aysvc KIME_RAT : 142- 148: lppga GLGSSaA ysvcv KIME_SCHPO : 137- 142: vplga GLGSS-A tisvv KIME_YEAST : 145- 150: lpiga GLGSS-A sisvs C 3: 22.0723 27( 24) P-x(3,4)-L-x(0,1)-S-S-[AGS]-[ACGST]-x(4)-[AGLPV] Occurences: 27(24) ERG8_YEAST : 151- 165: rieev Pktg-LgSSAGlvtvL ttala GAL1_BACSU : 122- 136: fsgni PngagL-SSSAsielL mgvvl GAL1_ECOLI : 121- 135: isgnv PqgagL-SSSAslevA vgtvl GAL1_ECOLI : 121- 136: isgnv PqgagLsSSASlevaV gtvlq GAL1_HAEIN : 121- 135: isgnv PlssgL-SSSAalevA vgkfc GAL1_HAEIN : 121- 136: isgnv PlssgLsSSAAlevaV gkfcq GAL1_KLULA : 151- 165: vkgdi PsgggL-SSSAaficA vslai GAL1_KLULA : 151- 166: vkgdi PsgggLsSSAAficaV slaii GAL1_LACHE : 123- 137: ieanl PsgsgL-SSSAaiemL mgiil GAL1_SALTY : 121- 135: visnv PqgagL-SSSAslevA vgtvf GAL1_SALTY : 121- 136: visnv PqgagLsSSASlevaV gtvfq GAL1_STRLI : 122- 137: lastv PsgagLsSSAAlevrP lamnd GAL1_YEAST : 162- 176: cegdv PtgsgL-SSSAaficA valav GAL1_YEAST : 162- 177: cegdv PtgsgLsSSAAficaV alavv GAL2_HUMAN : 139- 154: vdgni PpssgLsSSSAlvccA glvtl GAL2_HUMAN : 140- 154: dgnip Pssg-LsSSSAlvccA glvtl KHSE_BACSU : 90- 105: vwsdi PlargLgSSAAaivaA ielad KHSE_BRELA : 94- 109: chnni PqsrgLgSSAAaavaG vaaan KHSE_CORGL : 94- 109: chnni PqsrgLgSSAAaavaG vaaan KHSE_ECOLI : 91- 106: leknm PigsgLgSSACsvvaA lmamn KHSE_FREDI : 92- 107: idlgv PlargLgSSATaivgG lvaan KHSE_HAEIN : 96- 111: leknm PigsgLgSSACsivaA lvaln KHSE_MYCLE : 95- 110: crnai PhsrgLgSSAAavvgG lavvn KHSE_SERMA : 91- 106: leknm PigsgLgSSACsvvaG lmamn KHSE_YEAST : 103- 118: vsnpi PlgrgLgSSGAavvaG vilgn KIME_ARATH : 141- 156: insel PygsgLgSSAAlcvaL taall KIME_HUMAN : 138- 153: vwsel PpgagLgSSAAysvcL aaall KIME_HUMAN : 139- 153: wselp Pgag-LgSSAAysvcL aaall KIME_RAT : 138- 153: vwsel PpgagLgSSAAysvcV aaall KIME_RAT : 139- 153: wselp Pgag-LgSSAAysvcV aaall KIME_SCHPO : 133- 148: issqv PlgagLgSSATisvvV atsll KIME_YEAST : 141- 156: lkstl PigagLgSSASisvsL alama D 4: 20.3503 24( 24) G-L-x-S-S-x(0,1)-A Occurences: 24(24) ERG8_YEAST : 154- 159: evpkt GLgSS-A glvtv GAL1_BACSU : 126- 131: ipnga GLsSS-A siell GAL1_ECOLI : 125- 130: vpqga GLsSS-A sleva GAL1_HAEIN : 125- 130: vplss GLsSS-A aleva GAL1_HAEIN : 125- 131: vplss GLsSSaA levav GAL1_KLULA : 155- 160: ipsgg GLsSS-A afica GAL1_KLULA : 155- 161: ipsgg GLsSSaA ficav GAL1_LACHE : 127- 132: lpsgs GLsSS-A aieml GAL1_LACHE : 127- 133: lpsgs GLsSSaA iemlm GAL1_SALTY : 125- 130: vpqga GLsSS-A sleva GAL1_STRLI : 126- 131: vpsga GLsSS-A alevr GAL1_STRLI : 126- 132: vpsga GLsSSaA levrp GAL1_YEAST : 166- 171: vptgs GLsSS-A afica GAL1_YEAST : 166- 172: vptgs GLsSSaA ficav GAL2_HUMAN : 143- 149: ippss GLsSSsA lvcca KHSE_BACSU : 94- 99: iplar GLgSS-A aaiva KHSE_BACSU : 94- 100: iplar GLgSSaA aivaa KHSE_BRELA : 98- 103: ipqsr GLgSS-A aaava KHSE_BRELA : 98- 104: ipqsr GLgSSaA aavag KHSE_CORGL : 98- 103: ipqsr GLgSS-A aaava KHSE_CORGL : 98- 104: ipqsr GLgSSaA aavag KHSE_ECOLI : 95- 100: mpigs GLgSS-A csvva KHSE_FREDI : 96- 101: vplar GLgSS-A taivg KHSE_HAEIN : 100- 105: mpigs GLgSS-A csiva KHSE_MYCLE : 99- 104: iphsr GLgSS-A aavvg KHSE_MYCLE : 99- 105: iphsr GLgSSaA avvgg KHSE_SERMA : 95- 100: mpigs GLgSS-A csvva KHSE_YEAST : 107- 113: iplgr GLgSSgA avvag KIME_ARATH : 145- 150: lpygs GLgSS-A alcva KIME_ARATH : 145- 151: lpygs GLgSSaA lcval KIME_HUMAN : 142- 147: lppga GLgSS-A aysvc KIME_HUMAN : 142- 148: lppga GLgSSaA ysvcl KIME_RAT : 142- 147: lppga GLgSS-A aysvc KIME_RAT : 142- 148: lppga GLgSSaA ysvcv KIME_SCHPO : 137- 142: vplga GLgSS-A tisvv KIME_YEAST : 145- 150: lpiga GLgSS-A sisvs E 5: 19.3607 24( 24) L-[GS]-S-S-x(0,1)-A Occurences: 24(24) ERG8_YEAST : 155- 159: vpktg LGSS-A glvtv GAL1_BACSU : 127- 131: pngag LSSS-A siell GAL1_ECOLI : 126- 130: pqgag LSSS-A sleva GAL1_HAEIN : 126- 130: plssg LSSS-A aleva GAL1_HAEIN : 126- 131: plssg LSSSaA levav GAL1_KLULA : 156- 160: psggg LSSS-A afica GAL1_KLULA : 156- 161: psggg LSSSaA ficav GAL1_LACHE : 128- 132: psgsg LSSS-A aieml GAL1_LACHE : 128- 133: psgsg LSSSaA iemlm GAL1_SALTY : 126- 130: pqgag LSSS-A sleva GAL1_STRLI : 127- 131: psgag LSSS-A alevr GAL1_STRLI : 127- 132: psgag LSSSaA levrp GAL1_YEAST : 167- 171: ptgsg LSSS-A afica GAL1_YEAST : 167- 172: ptgsg LSSSaA ficav GAL2_HUMAN : 144- 149: ppssg LSSSsA lvcca KHSE_BACSU : 95- 99: plarg LGSS-A aaiva KHSE_BACSU : 95- 100: plarg LGSSaA aivaa KHSE_BRELA : 99- 103: pqsrg LGSS-A aaava KHSE_BRELA : 99- 104: pqsrg LGSSaA aavag KHSE_CORGL : 99- 103: pqsrg LGSS-A aaava KHSE_CORGL : 99- 104: pqsrg LGSSaA aavag KHSE_ECOLI : 96- 100: pigsg LGSS-A csvva KHSE_FREDI : 97- 101: plarg LGSS-A taivg KHSE_HAEIN : 101- 105: pigsg LGSS-A csiva KHSE_MYCLE : 100- 104: phsrg LGSS-A aavvg KHSE_MYCLE : 100- 105: phsrg LGSSaA avvgg KHSE_SERMA : 96- 100: pigsg LGSS-A csvva KHSE_YEAST : 108- 113: plgrg LGSSgA avvag KIME_ARATH : 146- 150: pygsg LGSS-A alcva KIME_ARATH : 146- 151: pygsg LGSSaA lcval KIME_HUMAN : 143- 147: ppgag LGSS-A aysvc KIME_HUMAN : 143- 148: ppgag LGSSaA ysvcl KIME_RAT : 143- 147: ppgag LGSS-A aysvc KIME_RAT : 143- 148: ppgag LGSSaA ysvcv KIME_SCHPO : 138- 142: plgag LGSS-A tisvv KIME_YEAST : 146- 150: pigag LGSS-A sisvs F 6: 18.4023 25( 24) G-x(1,2)-S-S-[AGS]-[ACGST]-x(4)-[AGLPV] Occurences: 25(24) ERG8_YEAST : 154- 165: evpkt GlgSSAGlvtvL ttala GAL1_BACSU : 126- 136: ipnga Gl-SSSAsielL mgvvl GAL1_ECOLI : 125- 135: vpqga Gl-SSSAslevA vgtvl GAL1_ECOLI : 125- 136: vpqga GlsSSASlevaV gtvlq GAL1_HAEIN : 125- 135: vplss Gl-SSSAalevA vgkfc GAL1_HAEIN : 125- 136: vplss GlsSSAAlevaV gkfcq GAL1_KLULA : 154- 165: dipsg GglSSSAaficA vslai GAL1_KLULA : 155- 165: ipsgg Gl-SSSAaficA vslai GAL1_KLULA : 155- 166: ipsgg GlsSSAAficaV slaii GAL1_LACHE : 127- 137: lpsgs Gl-SSSAaiemL mgiil GAL1_SALTY : 125- 135: vpqga Gl-SSSAslevA vgtvf GAL1_SALTY : 125- 136: vpqga GlsSSASlevaV gtvfq GAL1_STRLI : 126- 137: vpsga GlsSSAAlevrP lamnd GAL1_YEAST : 166- 176: vptgs Gl-SSSAaficA valav GAL1_YEAST : 166- 177: vptgs GlsSSAAficaV alavv GAL2_HUMAN : 143- 154: ippss GlsSSSAlvccA glvtl KHSE_BACSU : 94- 105: iplar GlgSSAAaivaA ielad KHSE_BRELA : 98- 109: ipqsr GlgSSAAaavaG vaaan KHSE_CORGL : 98- 109: ipqsr GlgSSAAaavaG vaaan KHSE_ECOLI : 95- 106: mpigs GlgSSACsvvaA lmamn KHSE_FREDI : 96- 107: vplar GlgSSATaivgG lvaan KHSE_HAEIN : 100- 111: mpigs GlgSSACsivaA lvaln KHSE_MYCLE : 99- 110: iphsr GlgSSAAavvgG lavvn KHSE_SERMA : 95- 106: mpigs GlgSSACsvvaG lmamn KHSE_YEAST : 107- 118: iplgr GlgSSGAavvaG vilgn KIME_ARATH : 145- 156: lpygs GlgSSAAlcvaL taall KIME_HUMAN : 142- 153: lppga GlgSSAAysvcL aaall KIME_RAT : 142- 153: lppga GlgSSAAysvcV aaall KIME_SCHPO : 137- 148: vplga GlgSSATisvvV atsll KIME_YEAST : 145- 156: lpiga GlgSSASisvsL alama G 7: 16.8319 26( 24) P-x-[AGS]-x-G-x(1,2)-S-x-[AGNS] Occurences: 26(24) ERG8_YEAST : 79- 87: ksgfi PvSiGg-SkN pfiek GAL1_BACSU : 122- 130: fsgni PnGaGl-SsS asiel GAL1_BACSU : 122- 131: fsgni PnGaGlsSsA siell GAL1_ECOLI : 121- 129: isgnv PqGaGl-SsS aslev GAL1_ECOLI : 121- 130: isgnv PqGaGlsSsA sleva GAL1_HAEIN : 121- 129: isgnv PlSsGl-SsS aalev GAL1_HAEIN : 121- 130: isgnv PlSsGlsSsA aleva GAL1_KLULA : 151- 159: vkgdi PsGgGl-SsS aafic GAL1_KLULA : 151- 160: vkgdi PsGgGlsSsA afica GAL1_LACHE : 123- 131: ieanl PsGsGl-SsS aaiem GAL1_LACHE : 123- 132: ieanl PsGsGlsSsA aieml GAL1_SALTY : 121- 129: visnv PqGaGl-SsS aslev GAL1_SALTY : 121- 130: visnv PqGaGlsSsA sleva GAL1_STRLI : 122- 130: lastv PsGaGl-SsS aalev GAL1_STRLI : 122- 131: lastv PsGaGlsSsA alevr GAL1_YEAST : 162- 170: cegdv PtGsGl-SsS aafic GAL1_YEAST : 162- 171: cegdv PtGsGlsSsA afica GAL2_HUMAN : 139- 147: vdgni PpSsGl-SsS salvc GAL2_HUMAN : 139- 148: vdgni PpSsGlsSsS alvcc KHSE_BACSU : 90- 99: vwsdi PlArGlgSsA aaiva KHSE_BRELA : 94- 103: chnni PqSrGlgSsA aaava KHSE_CORGL : 94- 103: chnni PqSrGlgSsA aaava KHSE_ECOLI : 91- 100: leknm PiGsGlgSsA csvva KHSE_FREDI : 92- 101: idlgv PlArGlgSsA taivg KHSE_HAEIN : 96- 105: leknm PiGsGlgSsA csiva KHSE_MYCLE : 95- 104: crnai PhSrGlgSsA aavvg KHSE_SERMA : 7- 16: vkvya PaSiGnvSvG fdvlg KHSE_SERMA : 91- 100: leknm PiGsGlgSsA csvva KHSE_YEAST : 103- 112: vsnpi PlGrGlgSsG aavva KIME_ARATH : 141- 150: insel PyGsGlgSsA alcva KIME_HUMAN : 138- 147: vwsel PpGaGlgSsA aysvc KIME_RAT : 43- 52: flvlr PqSnGkvSlN lpnvg KIME_RAT : 138- 147: vwsel PpGaGlgSsA aysvc KIME_SCHPO : 133- 142: issqv PlGaGlgSsA tisvv KIME_YEAST : 141- 150: lkstl PiGaGlgSsA sisvs H 8: 16.2735 26( 24) G-x(0,1)-S-S-[AGS]-[ACGNST] Occurences: 26(24) ERG8_YEAST : 156- 160: pktgl G-SSAG lvtvl GAL1_BACSU : 126- 131: ipnga GlSSSA siell GAL1_ECOLI : 125- 130: vpqga GlSSSA sleva GAL1_HAEIN : 125- 130: vplss GlSSSA aleva GAL1_KLULA : 155- 160: ipsgg GlSSSA afica GAL1_LACHE : 127- 132: lpsgs GlSSSA aieml GAL1_SALTY : 125- 130: vpqga GlSSSA sleva GAL1_STRLI : 126- 131: vpsga GlSSSA alevr GAL1_YEAST : 166- 171: vptgs GlSSSA afica GAL2_HUMAN : 143- 148: ippss GlSSSS alvcc KHSE_BACSU : 96- 100: largl G-SSAA aivaa KHSE_BRELA : 16- 20: tvtvp G-SSAN lgpgf KHSE_BRELA : 100- 104: qsrgl G-SSAA aavag KHSE_CORGL : 16- 20: tvtvp G-SSAN lgpgf KHSE_CORGL : 100- 104: qsrgl G-SSAA aavag KHSE_ECOLI : 97- 101: igsgl G-SSAC svvaa KHSE_FREDI : 98- 102: largl G-SSAT aivgg KHSE_HAEIN : 102- 106: igsgl G-SSAC sivaa KHSE_MYCLE : 101- 105: hsrgl G-SSAA avvgg KHSE_SERMA : 97- 101: igsgl G-SSAC svvag KHSE_YEAST : 109- 113: lgrgl G-SSGA avvag KIME_ARATH : 147- 151: ygsgl G-SSAA lcval KIME_HUMAN : 144- 148: pgagl G-SSAA ysvcl KIME_RAT : 144- 148: pgagl G-SSAA ysvcv KIME_SCHPO : 139- 143: lgagl G-SSAT isvvv KIME_YEAST : 147- 151: igagl G-SSAS isvsl I 9: 15.1802 26( 24) G-x(0,1)-S-S-x(0,2)-A Occurences: 26(24) ERG8_YEAST : 156- 159: pktgl G-SS--A glvtv GAL1_BACSU : 126- 131: ipnga GlSSs-A siell GAL1_ECOLI : 125- 130: vpqga GlSSs-A sleva GAL1_HAEIN : 125- 130: vplss GlSSs-A aleva GAL1_HAEIN : 125- 131: vplss GlSSsaA levav GAL1_KLULA : 155- 160: ipsgg GlSSs-A afica GAL1_KLULA : 155- 161: ipsgg GlSSsaA ficav GAL1_LACHE : 127- 132: lpsgs GlSSs-A aieml GAL1_LACHE : 127- 133: lpsgs GlSSsaA iemlm GAL1_SALTY : 125- 130: vpqga GlSSs-A sleva GAL1_STRLI : 126- 131: vpsga GlSSs-A alevr GAL1_STRLI : 126- 132: vpsga GlSSsaA levrp GAL1_YEAST : 166- 171: vptgs GlSSs-A afica GAL1_YEAST : 166- 172: vptgs GlSSsaA ficav GAL2_HUMAN : 143- 149: ippss GlSSssA lvcca KHSE_BACSU : 96- 99: largl G-SS--A aaiva KHSE_BACSU : 96- 100: largl G-SSa-A aivaa KHSE_BACSU : 96- 101: largl G-SSaaA ivaai KHSE_BRELA : 16- 19: tvtvp G-SS--A nlgpg KHSE_BRELA : 100- 103: qsrgl G-SS--A aaava KHSE_BRELA : 100- 104: qsrgl G-SSa-A aavag KHSE_BRELA : 100- 105: qsrgl G-SSaaA avagv KHSE_CORGL : 16- 19: tvtvp G-SS--A nlgpg KHSE_CORGL : 100- 103: qsrgl G-SS--A aaava KHSE_CORGL : 100- 104: qsrgl G-SSa-A aavag KHSE_CORGL : 100- 105: qsrgl G-SSaaA avagv KHSE_ECOLI : 97- 100: igsgl G-SS--A csvva KHSE_FREDI : 98- 101: largl G-SS--A taivg KHSE_FREDI : 98- 103: largl G-SSatA ivggl KHSE_HAEIN : 102- 105: igsgl G-SS--A csiva KHSE_MYCLE : 101- 104: hsrgl G-SS--A aavvg KHSE_MYCLE : 101- 105: hsrgl G-SSa-A avvgg KHSE_MYCLE : 101- 106: hsrgl G-SSaaA vvggl KHSE_SERMA : 97- 100: igsgl G-SS--A csvva KHSE_YEAST : 109- 113: lgrgl G-SSg-A avvag KHSE_YEAST : 109- 114: lgrgl G-SSgaA vvagv KIME_ARATH : 147- 150: ygsgl G-SS--A alcva KIME_ARATH : 147- 151: ygsgl G-SSa-A lcval KIME_HUMAN : 144- 147: pgagl G-SS--A aysvc KIME_HUMAN : 144- 148: pgagl G-SSa-A ysvcl KIME_RAT : 144- 147: pgagl G-SS--A aysvc KIME_RAT : 144- 148: pgagl G-SSa-A ysvcv KIME_SCHPO : 139- 142: lgagl G-SS--A tisvv KIME_YEAST : 147- 150: igagl G-SS--A sisvs J 10: 14.6035 24( 24) P-x-[AGS]-x-G-x(4,5)-A Occurences: 24(24) ERG8_YEAST : 396- 405: ltcli PgAgGydai-A vitkq GAL1_BACSU : 122- 131: fsgni PnGaGlsss-A siell GAL1_ECOLI : 121- 130: isgnv PqGaGlsss-A sleva GAL1_HAEIN : 121- 130: isgnv PlSsGlsss-A aleva GAL1_HAEIN : 121- 131: isgnv PlSsGlsssaA levav GAL1_KLULA : 151- 160: vkgdi PsGgGlsss-A afica GAL1_KLULA : 151- 161: vkgdi PsGgGlsssaA ficav GAL1_LACHE : 123- 132: ieanl PsGsGlsss-A aieml GAL1_LACHE : 123- 133: ieanl PsGsGlsssaA iemlm GAL1_SALTY : 121- 130: visnv PqGaGlsss-A sleva GAL1_STRLI : 122- 131: lastv PsGaGlsss-A alevr GAL1_STRLI : 122- 132: lastv PsGaGlsssaA levrp GAL1_YEAST : 162- 171: cegdv PtGsGlsss-A afica GAL1_YEAST : 162- 172: cegdv PtGsGlsssaA ficav GAL2_HUMAN : 139- 149: vdgni PpSsGlssssA lvcca KHSE_BACSU : 90- 99: vwsdi PlArGlgss-A aaiva KHSE_BACSU : 90- 100: vwsdi PlArGlgssaA aivaa KHSE_BRELA : 94- 103: chnni PqSrGlgss-A aaava KHSE_BRELA : 94- 104: chnni PqSrGlgssaA aavag KHSE_CORGL : 94- 103: chnni PqSrGlgss-A aaava KHSE_CORGL : 94- 104: chnni PqSrGlgssaA aavag KHSE_ECOLI : 91- 100: leknm PiGsGlgss-A csvva KHSE_FREDI : 92- 101: idlgv PlArGlgss-A taivg KHSE_HAEIN : 96- 105: leknm PiGsGlgss-A csiva KHSE_MYCLE : 95- 104: crnai PhSrGlgss-A aavvg KHSE_MYCLE : 95- 105: crnai PhSrGlgssaA avvgg KHSE_SERMA : 91- 100: leknm PiGsGlgss-A csvva KHSE_YEAST : 103- 113: vsnpi PlGrGlgssgA avvag KIME_ARATH : 141- 150: insel PyGsGlgss-A alcva KIME_ARATH : 141- 151: insel PyGsGlgssaA lcval KIME_HUMAN : 138- 147: vwsel PpGaGlgss-A aysvc KIME_HUMAN : 138- 148: vwsel PpGaGlgssaA ysvcl KIME_RAT : 138- 147: vwsel PpGaGlgss-A aysvc KIME_RAT : 138- 148: vwsel PpGaGlgssaA ysvcv KIME_SCHPO : 133- 142: issqv PlGaGlgss-A tisvv KIME_YEAST : 141- 150: lkstl PiGaGlgss-A sisvs K 11: 14.2003 31( 24) G-x(2,3)-S-[AGST]-A Occurences: 31(24) ERG8_YEAST : 154- 159: evpkt Glg-SSA glvtv GAL1_BACSU : 126- 131: ipnga Gls-SSA siell GAL1_ECOLI : 125- 130: vpqga Gls-SSA sleva GAL1_HAEIN : 125- 130: vplss Gls-SSA aleva GAL1_HAEIN : 125- 131: vplss GlssSAA levav GAL1_KLULA : 154- 160: dipsg GglsSSA afica GAL1_KLULA : 155- 160: ipsgg Gls-SSA afica GAL1_KLULA : 155- 161: ipsgg GlssSAA ficav GAL1_LACHE : 127- 132: lpsgs Gls-SSA aieml GAL1_LACHE : 127- 133: lpsgs GlssSAA iemlm GAL1_SALTY : 125- 130: vpqga Gls-SSA sleva GAL1_STRLI : 126- 131: vpsga Gls-SSA alevr GAL1_STRLI : 126- 132: vpsga GlssSAA levrp GAL1_YEAST : 166- 171: vptgs Gls-SSA afica GAL1_YEAST : 166- 172: vptgs GlssSAA ficav GAL2_HUMAN : 143- 149: ippss GlssSSA lvcca KHSE_BACSU : 94- 99: iplar Glg-SSA aaiva KHSE_BACSU : 94- 100: iplar GlgsSAA aivaa KHSE_BACSU : 250- 256: mkgay GtalSGA gptil KHSE_BRELA : 98- 103: ipqsr Glg-SSA aaava KHSE_BRELA : 98- 104: ipqsr GlgsSAA aavag KHSE_CORGL : 98- 103: ipqsr Glg-SSA aaava KHSE_CORGL : 98- 104: ipqsr GlgsSAA aavag KHSE_ECOLI : 95- 100: mpigs Glg-SSA csvva KHSE_ECOLI : 179- 185: vlayp GikvSTA earai KHSE_FREDI : 96- 101: vplar Glg-SSA taivg KHSE_FREDI : 252- 258: aagay GmviSGA gptll KHSE_HAEIN : 100- 105: mpigs Glg-SSA csiva KHSE_HAEIN : 184- 190: vlayp GievSTA earai KHSE_MYCLE : 99- 104: iphsr Glg-SSA aavvg KHSE_MYCLE : 99- 105: iphsr GlgsSAA avvgg KHSE_SERMA : 95- 100: mpigs Glg-SSA csvva KHSE_SERMA : 179- 185: vmayp GikvSTA earai KHSE_YEAST : 107- 113: iplgr GlgsSGA avvag KHSE_YEAST : 303- 309: ypgll GiclSGA gptil KIME_ARATH : 145- 150: lpygs Glg-SSA alcva KIME_ARATH : 145- 151: lpygs GlgsSAA lcval KIME_HUMAN : 142- 147: lppga Glg-SSA aysvc KIME_HUMAN : 142- 148: lppga GlgsSAA ysvcl KIME_RAT : 142- 147: lppga Glg-SSA aysvc KIME_RAT : 142- 148: lppga GlgsSAA ysvcv KIME_SCHPO : 137- 142: vplga Glg-SSA tisvv KIME_YEAST : 145- 150: lpiga Glg-SSA sisvs L 12: 12.5102 34( 24) S-S-A Occurences: 34(24) ERG8_YEAST : 157- 159: ktglg SSA glvtv GAL1_BACSU : 129- 131: gagls SSA siell GAL1_ECOLI : 128- 130: gagls SSA sleva GAL1_HAEIN : 128- 130: ssgls SSA aleva GAL1_KLULA : 158- 160: gggls SSA afica GAL1_LACHE : 130- 132: gsgls SSA aieml GAL1_SALTY : 128- 130: gagls SSA sleva GAL1_STRLI : 129- 131: gagls SSA alevr GAL1_YEAST : 15- 17: vpefn SSA kelpr GAL1_YEAST : 169- 171: gsgls SSA afica GAL2_HUMAN : 147- 149: sglss SSA lvcca KHSE_BACSU : 97- 99: arglg SSA aaiva KHSE_BRELA : 17- 19: vtvpg SSA nlgpg KHSE_BRELA : 101- 103: srglg SSA aaava KHSE_BRELA : 130- 132: qivql SSA feghp KHSE_CORGL : 17- 19: vtvpg SSA nlgpg KHSE_CORGL : 101- 103: srglg SSA aaava KHSE_CORGL : 130- 132: qivql SSA feghp KHSE_ECOLI : 9- 11: vyapa SSA nmsvg KHSE_ECOLI : 98- 100: gsglg SSA csvva KHSE_FREDI : 99- 101: arglg SSA taivg KHSE_HAEIN : 9- 11: iyapa SSA nisvg KHSE_HAEIN : 103- 105: gsglg SSA csiva KHSE_MYCLE : 18- 20: avvaa SSA nlgpg KHSE_MYCLE : 102- 104: srglg SSA aavvg KHSE_SERMA : 98- 100: gsglg SSA csvva KHSE_YEAST : 11- 13: ikvpa SSA nigpg KIME_ARATH : 148- 150: gsglg SSA alcva KIME_HUMAN : 145- 147: gaglg SSA aysvc KIME_RAT : 145- 147: gaglg SSA aysvc KIME_SCHPO : 140- 142: gaglg SSA tisvv KIME_SCHPO : 284- 286: esdkn SSA kklge KIME_YEAST : 44- 46: llise SSA pdtie KIME_YEAST : 148- 150: gaglg SSA sisvs M 13: 12.0102 39( 24) G-x(3)-S-x(0,1)-A Occurences: 39(24) ERG8_YEAST : 154- 159: evpkt GlgsS-A glvtv GAL1_BACSU : 126- 131: ipnga GlssS-A siell GAL1_ECOLI : 125- 130: vpqga GlssS-A sleva GAL1_HAEIN : 125- 130: vplss GlssS-A aleva GAL1_HAEIN : 125- 131: vplss GlssSaA levav GAL1_KLULA : 154- 160: dipsg GglsSsA afica GAL1_KLULA : 155- 160: ipsgg GlssS-A afica GAL1_KLULA : 155- 161: ipsgg GlssSaA ficav GAL1_LACHE : 127- 132: lpsgs GlssS-A aieml GAL1_LACHE : 127- 133: lpsgs GlssSaA iemlm GAL1_LACHE : 182- 187: facim GkknS-A ifldc GAL1_LACHE : 341- 346: rmigg GfggS-A iaivk GAL1_SALTY : 125- 130: vpqga GlssS-A sleva GAL1_STRLI : 126- 131: vpsga GlssS-A alevr GAL1_STRLI : 126- 132: vpsga GlssSaA levrp GAL1_STRLI : 337- 342: rmtgg GfggS-A ivlve GAL1_STRLI : 384- 390: rgaap GltvSrA aspac GAL1_YEAST : 166- 171: vptgs GlssS-A afica GAL1_YEAST : 166- 172: vptgs GlssSaA ficav GAL2_HUMAN : 143- 149: ippss GlssSsA lvcca KHSE_BACSU : 94- 99: iplar GlgsS-A aaiva KHSE_BACSU : 94- 100: iplar GlgsSaA aivaa KHSE_BACSU : 114- 120: adelc GlklSeA dklhl KHSE_BACSU : 250- 256: mkgay GtalSgA gptil KHSE_BRELA : 98- 103: ipqsr GlgsS-A aaava KHSE_BRELA : 98- 104: ipqsr GlgsSaA aavag KHSE_CORGL : 98- 103: ipqsr GlgsS-A aaava KHSE_CORGL : 98- 104: ipqsr GlgsSaA aavag KHSE_ECOLI : 95- 100: mpigs GlgsS-A csvva KHSE_ECOLI : 179- 185: vlayp GikvStA earai KHSE_FREDI : 96- 101: vplar GlgsS-A taivg KHSE_FREDI : 252- 258: aagay GmviSgA gptll KHSE_HAEIN : 100- 105: mpigs GlgsS-A csiva KHSE_HAEIN : 184- 190: vlayp GievStA earai KHSE_MYCLE : 8- 13: wmlpa GlvaS-A vvaas KHSE_MYCLE : 99- 104: iphsr GlgsS-A aavvg KHSE_MYCLE : 99- 105: iphsr GlgsSaA avvgg KHSE_SERMA : 95- 100: mpigs GlgsS-A csvva KHSE_SERMA : 179- 185: vmayp GikvStA earai KHSE_YEAST : 107- 113: iplgr GlgsSgA avvag KHSE_YEAST : 303- 309: ypgll GiclSgA gptil KIME_ARATH : 145- 150: lpygs GlgsS-A alcva KIME_ARATH : 145- 151: lpygs GlgsSaA lcval KIME_HUMAN : 142- 147: lppga GlgsS-A aysvc KIME_HUMAN : 142- 148: lppga GlgsSaA ysvcl KIME_RAT : 142- 147: lppga GlgsS-A aysvc KIME_RAT : 142- 148: lppga GlgsSaA ysvcv KIME_SCHPO : 101- 106: kneen GlihS-A mlctl KIME_SCHPO : 137- 142: vplga GlgsS-A tisvv KIME_SCHPO : 267- 272: idaid GiskS-A vlalt KIME_YEAST : 145- 150: lpiga GlgsS-A sisvs N 14: 11.5102 56( 24) G-x(1,2)-G-x(4,5)-A Occurences: 56(24) ERG8_YEAST : 201- 210: hcqaq GkiGsgfdvA aaryg ERG8_YEAST : 204- 211: aqgki Gs-Gfdva-A arygs ERG8_YEAST : 204- 212: aqgki Gs-GfdvaaA rygsi ERG8_YEAST : 397- 405: tclip GagGydai-A vitkq ERG8_YEAST : 397- 405: tclip Ga-GgydaiA vitkq GAL1_BACSU : 124- 131: gnipn Ga-Glsss-A siell GAL1_BACSU : 179- 186: dqfai Gm-Gkkhh-A mllnc GAL1_BACSU : 330- 339: awdhe GviGsrmtgA gfggc GAL1_ECOLI : 123- 130: gnvpq Ga-Glsss-A sleva GAL1_ECOLI : 333- 341: vrmtg GgfGgciv-A lipee GAL1_ECOLI : 334- 341: rmtgg Gf-Ggciv-A lipee GAL1_HAEIN : 336- 344: armtg GgfGgciv-A laphd GAL1_HAEIN : 337- 344: rmtgg Gf-Ggciv-A laphd GAL1_HAEIN : 337- 346: rmtgg GfgGcivalA phdkv GAL1_KLULA : 153- 160: gdips Gg-Glsss-A afica GAL1_KLULA : 153- 161: gdips Gg-GlsssaA ficav GAL1_KLULA : 438- 447: ialkn GsfGsrltgA gwggc GAL1_LACHE : 125- 132: anlps Gs-Glsss-A aieml GAL1_LACHE : 125- 133: anlps Gs-GlsssaA iemlm GAL1_LACHE : 339- 346: garmi Gg-Gfggs-A iaivk GAL1_LACHE : 340- 348: armig GgfGgsai-A ivkks GAL1_LACHE : 341- 348: rmigg Gf-Ggsai-A ivkks GAL1_SALTY : 123- 130: snvpq Ga-Glsss-A sleva GAL1_SALTY : 332- 340: vrmtg GgfGgcvv-A liped GAL1_SALTY : 333- 340: rmtgg Gf-Ggcvv-A liped GAL1_STRLI : 124- 131: stvps Ga-Glsss-A alevr GAL1_STRLI : 124- 132: stvps Ga-GlsssaA levrp GAL1_STRLI : 335- 342: grrmt Gg-Gfggs-A ivlve GAL1_YEAST : 164- 171: gdvpt Gs-Glsss-A afica GAL1_YEAST : 164- 172: gdvpt Gs-GlsssaA ficav GAL1_YEAST : 458- 467: ialsn GsyGsrltgA gwggc GAL2_HUMAN : 393- 402: icrkf GaqGsrltgA gwggc KHSE_BACSU : 94- 101: iplar Gl-Gssaa-A ivaai KHSE_BACSU : 247- 256: vaemk GayGtalsgA gptil KHSE_BRELA : 98- 105: ipqsr Gl-Gssaa-A avagv KHSE_BRELA : 98- 106: ipqsr Gl-GssaaaA vagva KHSE_CORGL : 98- 105: ipqsr Gl-Gssaa-A avagv KHSE_CORGL : 98- 106: ipqsr Gl-GssaaaA vagva KHSE_ECOLI : 93- 100: knmpi Gs-Glgss-A csvva KHSE_ECOLI : 261- 268: asgis Gs-Gptlf-A lcdkp KHSE_FREDI : 19- 27: ttanl Gp-GfdcigA altly KHSE_FREDI : 96- 103: vplar Gl-Gssat-A ivggl KHSE_FREDI : 213- 221: rglat Gk-GewlktA lqdkl KHSE_FREDI : 249- 258: aavaa GayGmvisgA gptll KHSE_FREDI : 257- 264: gmvis Ga-Gptll-A ladaq KHSE_HAEIN : 98- 105: knmpi Gs-Glgss-A csiva KHSE_MYCLE : 99- 106: iphsr Gl-Gssaa-A vvggl KHSE_MYCLE : 266- 273: aatls Ga-Gpsli-A lstqs KHSE_SERMA : 93- 100: knmpi Gs-Glgss-A csvva KHSE_SERMA : 261- 268: acgis Gs-Gptlf-A vcndg KHSE_YEAST : 105- 113: npipl Gr-GlgssgA avvag KHSE_YEAST : 107- 114: iplgr Gl-Gssga-A vvagv KHSE_YEAST : 109- 117: lgrgl GssGaavv-A gvilg KHSE_YEAST : 300- 309: pstyp GllGiclsgA gptil KHSE_YEAST : 308- 315: gicls Ga-Gptil-A laten KIME_ARATH : 143- 150: selpy Gs-Glgss-A alcva KIME_ARATH : 143- 151: selpy Gs-GlgssaA lcval KIME_HUMAN : 140- 147: selpp Ga-Glgss-A aysvc KIME_HUMAN : 140- 148: selpp Ga-GlgssaA ysvcl KIME_HUMAN : 373- 382: letsi GapGvsihsA tslds KIME_RAT : 103- 111: prdcv GneGlsll-A flyly KIME_RAT : 140- 147: selpp Ga-Glgss-A aysvc KIME_RAT : 140- 148: selpp Ga-GlgssaA ysvcv KIME_RAT : 373- 382: wetsi GapGvsmhsA tsied KIME_SCHPO : 135- 142: sqvpl Ga-Glgss-A tisvv KIME_YEAST : 143- 150: stlpi Ga-Glgss-A sisvs KIME_YEAST : 392- 401: fetdl GgtGccllsA knlnk KIME_YEAST : 393- 401: etdlg Gt-GccllsA knlnk O 15: 11.5102 48( 24) L-x(2,3)-A-x(0,1)-G Occurences: 48(24) ERG8_YEAST : 155- 160: vpktg LgssA-G lvtvl ERG8_YEAST : 394- 399: gvltc LipgA-G gydai ERG8_YEAST : 394- 400: gvltc LipgAgG ydaia GAL1_BACSU : 242- 248: dlkkg LdiaAlG dikps GAL1_ECOLI : 9- 15: ektqs LfanAfG ypath GAL1_ECOLI : 132- 137: sssas Lev-AvG tvlqq GAL1_ECOLI : 175- 180: gimdq Lis-AlG kkdha GAL1_HAEIN : 132- 137: sssaa Lev-AvG kfcqq GAL1_HAEIN : 175- 180: gnmdq Lis-AlG qenhl GAL1_KLULA : 444- 448: sfgsr Ltg-A-G wggct GAL1_LACHE : 200- 205: lkyey Lpl-AlG dyeii GAL1_LACHE : 243- 249: klqqk LdikAlG eldnd GAL1_SALTY : 105- 111: vkhlq LrnnAfG gvdmv GAL1_SALTY : 132- 137: sssas Lev-AvG tvfqq GAL1_SALTY : 174- 179: gimdq Lis-AlG kkdha GAL1_STRLI : 103- 107: gvlwa Lre-A-G heltg GAL1_STRLI : 324- 330: vvdta LasaAlG rrmtg GAL1_YEAST : 464- 468: sygsr Ltg-A-G wggct GAL2_HUMAN : 150- 155: ssssa LvccA-G lvtlt GAL2_HUMAN : 399- 403: aqgsr Ltg-A-G wggct KHSE_BACSU : 253- 257: aygta Lsg-A-G ptilv KHSE_BRELA : 262- 266: gyaay Lsg-A-G ptamv KHSE_BRELA : 295- 299: ikvle Lev-A-G pvkve KHSE_CORGL : 262- 266: gyaay Lsg-A-G ptamv KHSE_CORGL : 295- 299: ikvle Lev-A-G pvkve KHSE_ECOLI : 300- 304: vhicr Ldt-A-G arvle KHSE_FREDI : 207- 213: hlgll LrglAtG kgewl KHSE_HAEIN : 47- 51: stgfe Les-A-G yfvrk KHSE_HAEIN : 257- 263: qatrd LgalAtG isgsg KHSE_MYCLE : 264- 268: nvaat Lsg-A-G pslia KHSE_SERMA : 46- 50: aetfs Lqn-A-G rfvsk KHSE_SERMA : 300- 304: vhicr Ldt-A-G arllg KHSE_YEAST : 306- 310: llgic Lsg-A-G ptila KIME_ARATH : 331- 335: klvsk Ltg-A-G gggcv KIME_ARATH : 331- 336: klvsk Ltg-AgG ggcvl KIME_HUMAN : 6- 12: mlsev LlvsApG kvilh KIME_HUMAN : 7- 12: lsevl Lvs-ApG kvilh KIME_HUMAN : 91- 96: eqvek LkevA-G lpddc KIME_HUMAN : 137- 142: vvwse LppgA-G lgssa KIME_HUMAN : 331- 335: glhsk Ltg-A-G gggcg KIME_HUMAN : 331- 336: glhsk Ltg-AgG ggcgi KIME_RAT : 6- 12: mlsev LlvsApG kvilh KIME_RAT : 7- 12: lsevl Lvs-ApG kvilh KIME_RAT : 91- 96: eqlek LkkvA-G lprdc KIME_RAT : 137- 142: mvwse LppgA-G lgssa KIME_RAT : 331- 335: glhsk Ltg-A-G gggcg KIME_RAT : 331- 336: glhsk Ltg-AgG ggcgi KIME_SCHPO : 152- 157: vvats Lll-AfG niepp KIME_SCHPO : 325- 329: igwtk Ltg-A-G gggct KIME_SCHPO : 325- 330: igwtk Ltg-AgG ggcti KIME_YEAST : 6- 11: mslpf Lts-ApG kviif KIME_YEAST : 140- 145: slkst LpigA-G lgssa KIME_YEAST : 349- 353: igstk Ltg-A-G gggcs KIME_YEAST : 349- 354: igstk Ltg-AgG ggcsl P 16: 11.5102 38( 24) G-x(0,1)-L-x(3,4)-A Occurences: 38(24) ERG8_YEAST : 154- 159: evpkt G-Lgss-A glvtv GAL1_BACSU : 18- 24: fgeke G-LrfffA pgrvn GAL1_BACSU : 126- 131: ipnga G-Lsss-A siell GAL1_BACSU : 205- 211: klnvs G-LalviA ntnkk GAL1_BACSU : 241- 246: ldlkk G-Ldia-A lgdik GAL1_ECOLI : 125- 130: vpqga G-Lsss-A sleva GAL1_HAEIN : 125- 130: vplss G-Lsss-A aleva GAL1_HAEIN : 125- 131: vplss G-LsssaA levav GAL1_KLULA : 154- 160: dipsg GgLsss-A afica GAL1_KLULA : 154- 161: dipsg GgLsssaA ficav GAL1_KLULA : 155- 160: ipsgg G-Lsss-A afica GAL1_KLULA : 155- 161: ipsgg G-LsssaA ficav GAL1_LACHE : 127- 132: lpsgs G-Lsss-A aieml GAL1_LACHE : 127- 133: lpsgs G-LsssaA iemlm GAL1_SALTY : 125- 130: vpqga G-Lsss-A sleva GAL1_STRLI : 126- 131: vpsga G-Lsss-A alevr GAL1_STRLI : 126- 132: vpsga G-LsssaA levrp GAL1_STRLI : 384- 390: rgaap G-LtvsrA aspac GAL1_YEAST : 166- 171: vptgs G-Lsss-A afica GAL1_YEAST : 166- 172: vptgs G-LsssaA ficav GAL2_HUMAN : 143- 149: ippss G-LssssA lvcca GAL2_HUMAN : 451- 458: tkpgg GaLvlleA KHSE_BACSU : 94- 99: iplar G-Lgss-A aaiva KHSE_BACSU : 94- 100: iplar G-LgssaA aivaa KHSE_BACSU : 114- 120: adelc G-LklseA dklhl KHSE_BRELA : 74- 80: kaira G-LkaadA evpgl KHSE_BRELA : 98- 103: ipqsr G-Lgss-A aaava KHSE_BRELA : 98- 104: ipqsr G-LgssaA aavag KHSE_CORGL : 74- 80: kaira G-LkaadA evpgl KHSE_CORGL : 98- 103: ipqsr G-Lgss-A aaava KHSE_CORGL : 98- 104: ipqsr G-LgssaA aavag KHSE_ECOLI : 95- 100: mpigs G-Lgss-A csvva KHSE_FREDI : 96- 101: vplar G-Lgss-A taivg KHSE_FREDI : 204- 211: ntahl GlLlrglA tgkge KHSE_HAEIN : 100- 105: mpigs G-Lgss-A csiva KHSE_MYCLE : 8- 13: wmlpa G-Lvas-A vvaas KHSE_MYCLE : 99- 104: iphsr G-Lgss-A aavvg KHSE_MYCLE : 99- 105: iphsr G-LgssaA avvgg KHSE_SERMA : 95- 100: mpigs G-Lgss-A csvva KHSE_YEAST : 107- 113: iplgr G-LgssgA avvag KIME_ARATH : 145- 150: lpygs G-Lgss-A alcva KIME_ARATH : 145- 151: lpygs G-LgssaA lcval KIME_HUMAN : 96- 102: lkeva G-LpddcA vterl KIME_HUMAN : 142- 147: lppga G-Lgss-A aysvc KIME_HUMAN : 142- 148: lppga G-LgssaA ysvcl KIME_RAT : 106- 111: cvgne G-Lsll-A flyly KIME_RAT : 142- 147: lppga G-Lgss-A aysvc KIME_RAT : 142- 148: lppga G-LgssaA ysvcv KIME_SCHPO : 101- 106: kneen G-Lihs-A mlctl KIME_SCHPO : 137- 142: vplga G-Lgss-A tisvv KIME_YEAST : 145- 150: lpiga G-Lgss-A sisvs Q 17: 11.5102 37( 24) P-x(3,4)-L-x(0,1)-S Occurences: 37(24) ERG8_YEAST : 151- 157: rieev Pktg-LgS saglv GAL1_BACSU : 122- 128: fsgni PngagL-S ssasi GAL1_BACSU : 122- 129: fsgni PngagLsS sasie GAL1_ECOLI : 121- 127: isgnv PqgagL-S ssasl GAL1_ECOLI : 121- 128: isgnv PqgagLsS sasle GAL1_HAEIN : 121- 127: isgnv PlssgL-S ssaal GAL1_HAEIN : 121- 128: isgnv PlssgLsS saale GAL1_KLULA : 151- 157: vkgdi PsgggL-S ssaaf GAL1_KLULA : 151- 158: vkgdi PsgggLsS saafi GAL1_LACHE : 123- 129: ieanl PsgsgL-S ssaai GAL1_LACHE : 123- 130: ieanl PsgsgLsS saaie GAL1_SALTY : 121- 127: visnv PqgagL-S ssasl GAL1_SALTY : 121- 128: visnv PqgagLsS sasle GAL1_STRLI : 122- 128: lastv PsgagL-S ssaal GAL1_STRLI : 122- 129: lastv PsgagLsS saale GAL1_YEAST : 162- 168: cegdv PtgsgL-S ssaaf GAL1_YEAST : 162- 169: cegdv PtgsgLsS saafi GAL2_HUMAN : 139- 145: vdgni PpssgL-S sssal GAL2_HUMAN : 139- 146: vdgni PpssgLsS ssalv GAL2_HUMAN : 140- 145: dgnip Pssg-L-S sssal GAL2_HUMAN : 140- 146: dgnip Pssg-LsS ssalv GAL2_HUMAN : 413- 419: tvsmv Padk-LpS flanv KHSE_BACSU : 90- 97: vwsdi PlargLgS saaai KHSE_BRELA : 94- 101: chnni PqsrgLgS saaaa KHSE_BRELA : 267- 273: lsgag PtamvL-S tepip KHSE_CORGL : 94- 101: chnni PqsrgLgS saaaa KHSE_CORGL : 267- 273: lsgag PtamvL-S tepip KHSE_ECOLI : 91- 98: leknm PigsgLgS sacsv KHSE_FREDI : 92- 99: idlgv PlargLgS satai KHSE_FREDI : 174- 179: pvvai Pdfe-L-S tqear KHSE_HAEIN : 96- 103: leknm PigsgLgS sacsi KHSE_MYCLE : 95- 102: crnai PhsrgLgS saaav KHSE_MYCLE : 269- 275: lsgag PsliaL-S tqsel KHSE_SERMA : 91- 98: leknm PigsgLgS sacsv KHSE_YEAST : 48- 54: etndd PnnckL-S ytkes KHSE_YEAST : 103- 110: vsnpi PlgrgLgS sgaav KHSE_YEAST : 220- 225: ciaii Pqfe-L-S tadsr KIME_ARATH : 141- 148: insel PygsgLgS saalc KIME_HUMAN : 138- 145: vwsel PpgagLgS saays KIME_HUMAN : 139- 145: wselp Pgag-LgS saays KIME_RAT : 138- 145: vwsel PpgagLgS saays KIME_RAT : 139- 145: wselp Pgag-LgS saays KIME_RAT : 178- 184: sigsw Peed-LkS inkwa KIME_SCHPO : 133- 140: issqv PlgagLgS satis KIME_SCHPO : 223- 228: keflk Pkdt-L-S vmitd KIME_YEAST : 101- 107: vslld PllaqL-S esfhy KIME_YEAST : 141- 148: lkstl PigagLgS sasis R 18: 11.5102 40( 24) L-x(2,3)-S-x(0,1)-A Occurences: 40(24) ERG8_YEAST : 4- 9: mse LrafS-A pgkal ERG8_YEAST : 155- 159: vpktg Lgs-S-A glvtv GAL1_BACSU : 127- 131: pngag Lss-S-A siell GAL1_ECOLI : 126- 130: pqgag Lss-S-A sleva GAL1_ECOLI : 292- 298: krmge LmaeShA smrdd GAL1_HAEIN : 126- 130: plssg Lss-S-A aleva GAL1_HAEIN : 126- 131: plssg Lss-SaA levav GAL1_KLULA : 156- 160: psggg Lss-S-A afica GAL1_KLULA : 156- 161: psggg Lss-SaA ficav GAL1_LACHE : 128- 132: psgsg Lss-S-A aieml GAL1_LACHE : 128- 133: psgsg Lss-SaA iemlm GAL1_LACHE : 220- 224: nnpht Lad-S-A ynnrv GAL1_SALTY : 126- 130: pqgag Lss-S-A sleva GAL1_SALTY : 291- 297: qrmgq LmaeShA smrdd GAL1_STRLI : 65- 70: rerri LrlhS-A dvdad GAL1_STRLI : 127- 131: psgag Lss-S-A alevr GAL1_STRLI : 127- 132: psgag Lss-SaA levrp GAL1_STRLI : 385- 390: gaapg Ltv-SrA aspac GAL1_YEAST : 167- 171: ptgsg Lss-S-A afica GAL1_YEAST : 167- 172: ptgsg Lss-SaA ficav GAL1_YEAST : 344- 350: tkmlv LveeSlA nkkqg GAL1_YEAST : 428- 434: kqfga LmneSqA scdkl GAL2_HUMAN : 144- 149: ppssg LsssS-A lvcca GAL2_HUMAN : 144- 149: ppssg Lss-SsA lvcca KHSE_BACSU : 95- 99: plarg Lgs-S-A aaiva KHSE_BACSU : 95- 100: plarg Lgs-SaA aivaa KHSE_BACSU : 115- 120: delcg Lkl-SeA dklhl KHSE_BRELA : 99- 103: pqsrg Lgs-S-A aaava KHSE_BRELA : 99- 104: pqsrg Lgs-SaA aavag KHSE_CORGL : 99- 103: pqsrg Lgs-S-A aaava KHSE_CORGL : 99- 104: pqsrg Lgs-SaA aavag KHSE_ECOLI : 96- 100: pigsg Lgs-S-A csvva KHSE_FREDI : 97- 101: plarg Lgs-S-A taivg KHSE_FREDI : 148- 153: lggcr LaatS-A egwei KHSE_HAEIN : 101- 105: pigsg Lgs-S-A csiva KHSE_MYCLE : 9- 13: mlpag Lva-S-A vvaas KHSE_MYCLE : 100- 104: phsrg Lgs-S-A aavvg KHSE_MYCLE : 100- 105: phsrg Lgs-SaA avvgg KHSE_SERMA : 96- 100: pigsg Lgs-S-A csvva KHSE_YEAST : 108- 113: plgrg Lgs-SgA avvag KIME_ARATH : 146- 150: pygsg Lgs-S-A alcva KIME_ARATH : 146- 151: pygsg Lgs-SaA lcval KIME_HUMAN : 6- 10: mlsev Llv-S-A pgkvi KIME_HUMAN : 143- 147: ppgag Lgs-S-A aysvc KIME_HUMAN : 143- 148: ppgag Lgs-SaA ysvcl KIME_HUMAN : 224- 229: gkiss Lkr-SpA lqill KIME_RAT : 6- 10: mlsev Llv-S-A pgkvi KIME_RAT : 143- 147: ppgag Lgs-S-A aysvc KIME_RAT : 143- 148: ppgag Lgs-SaA ysvcv KIME_SCHPO : 102- 106: neeng Lih-S-A mlctl KIME_SCHPO : 138- 142: plgag Lgs-S-A tisvv KIME_YEAST : 40- 46: lrtyl LiseSsA pdtie KIME_YEAST : 146- 150: pigag Lgs-S-A sisvs S 19: 11.5102 36( 24) G-x(2,3)-L-x(0,1)-S Occurences: 36(24) ERG8_YEAST : 136- 141: vtehr GnrrL-S fhshr GAL1_BACSU : 124- 128: gnipn Gag-L-S ssasi GAL1_BACSU : 124- 129: gnipn Gag-LsS sasie GAL1_BACSU : 138- 143: iellm Gvv-LqS yfhpe GAL1_ECOLI : 123- 127: gnvpq Gag-L-S ssasl GAL1_ECOLI : 123- 128: gnvpq Gag-LsS sasle GAL1_HAEIN : 118- 123: nlvis GnvpL-S sglss GAL1_HAEIN : 118- 124: nlvis GnvpLsS glsss GAL1_HAEIN : 144- 149: fcqql GdlpL-S htdia GAL1_KLULA : 153- 157: gdips Ggg-L-S ssaaf GAL1_KLULA : 153- 158: gdips Ggg-LsS saafi GAL1_LACHE : 125- 129: anlps Gsg-L-S ssaai GAL1_LACHE : 125- 130: anlps Gsg-LsS saaie GAL1_SALTY : 123- 127: snvpq Gag-L-S ssasl GAL1_SALTY : 123- 128: snvpq Gag-LsS sasle GAL1_STRLI : 124- 128: stvps Gag-L-S ssaal GAL1_STRLI : 124- 129: stvps Gag-LsS saale GAL1_YEAST : 164- 168: gdvpt Gsg-L-S ssaaf GAL1_YEAST : 164- 169: gdvpt Gsg-LsS saafi GAL1_YEAST : 292- 297: laaty GvvlL-S gkegs GAL1_YEAST : 292- 297: laaty Gvv-LlS gkegs GAL2_HUMAN : 163- 167: tltvl Grn-L-S kvela KHSE_BACSU : 27- 31: gfdsv Gma-L-S rylkl KHSE_BACSU : 114- 118: adelc Glk-L-S eadkl KHSE_BACSU : 250- 254: mkgay Gta-L-S gagpt KHSE_BRELA : 29- 33: gfdtl Gla-L-S vydtv KHSE_CORGL : 29- 33: gfdtl Gla-L-S vydtv KHSE_ECOLI : 93- 98: knmpi Gsg-LgS sacsv KHSE_FREDI : 116- 120: anqla Gep-L-S qlqvm KHSE_HAEIN : 44- 49: esist Gfe-LeS agyfv KHSE_HAEIN : 98- 103: knmpi Gsg-LgS sacsi KHSE_MYCLE : 30- 34: gfdsi Gla-L-S lcdei KHSE_SERMA : 93- 98: knmpi Gsg-LgS sacsv KHSE_YEAST : 23- 27: gydvl Gvg-L-S lflel KHSE_YEAST : 105- 110: npipl Grg-LgS sgaav KHSE_YEAST : 303- 307: ypgll Gic-L-S gagpt KIME_ARATH : 143- 148: selpy Gsg-LgS saalc KIME_ARATH : 303- 307: memnq Gll-L-S mgvsh KIME_HUMAN : 47- 52: qphsn GkvdL-S lpnig KIME_HUMAN : 140- 145: selpp Gag-LgS saays KIME_RAT : 103- 108: prdcv GnegL-S llafl KIME_RAT : 140- 145: selpp Gag-LgS saays KIME_SCHPO : 135- 140: sqvpl Gag-LgS satis KIME_YEAST : 143- 148: stlpi Gag-LgS sasis KIME_YEAST : 395- 400: dlggt GcclL-S aknln KIME_YEAST : 395- 400: dlggt Gcc-LlS aknln T 20: 11.5102 39( 24) G-L-x(2,4)-A Occurences: 39(24) ERG8_YEAST : 154- 159: evpkt GLgss-A glvtv GAL1_BACSU : 18- 24: fgeke GLrfffA pgrvn GAL1_BACSU : 126- 131: ipnga GLsss-A siell GAL1_BACSU : 205- 211: klnvs GLalviA ntnkk GAL1_BACSU : 241- 245: ldlkk GLdi--A algdi GAL1_BACSU : 241- 246: ldlkk GLdia-A lgdik GAL1_ECOLI : 125- 130: vpqga GLsss-A sleva GAL1_HAEIN : 125- 130: vplss GLsss-A aleva GAL1_HAEIN : 125- 131: vplss GLsssaA levav GAL1_KLULA : 121- 125: nyfkc GLlv--A qqflq GAL1_KLULA : 155- 160: ipsgg GLsss-A afica GAL1_KLULA : 155- 161: ipsgg GLsssaA ficav GAL1_LACHE : 127- 132: lpsgs GLsss-A aieml GAL1_LACHE : 127- 133: lpsgs GLsssaA iemlm GAL1_SALTY : 125- 130: vpqga GLsss-A sleva GAL1_STRLI : 126- 131: vpsga GLsss-A alevr GAL1_STRLI : 126- 132: vpsga GLsssaA levrp GAL1_STRLI : 384- 390: rgaap GLtvsrA aspac GAL1_YEAST : 129- 133: nyfkc GLhv--A hsflk GAL1_YEAST : 166- 171: vptgs GLsss-A afica GAL1_YEAST : 166- 172: vptgs GLsssaA ficav GAL2_HUMAN : 143- 149: ippss GLssssA lvcca KHSE_BACSU : 94- 99: iplar GLgss-A aaiva KHSE_BACSU : 94- 100: iplar GLgssaA aivaa KHSE_BACSU : 114- 120: adelc GLklseA dklhl KHSE_BRELA : 74- 78: kaira GLka--A daevp KHSE_BRELA : 74- 80: kaira GLkaadA evpgl KHSE_BRELA : 98- 103: ipqsr GLgss-A aaava KHSE_BRELA : 98- 104: ipqsr GLgssaA aavag KHSE_CORGL : 74- 78: kaira GLka--A daevp KHSE_CORGL : 74- 80: kaira GLkaadA evpgl KHSE_CORGL : 98- 103: ipqsr GLgss-A aaava KHSE_CORGL : 98- 104: ipqsr GLgssaA aavag KHSE_ECOLI : 95- 100: mpigs GLgss-A csvva KHSE_FREDI : 96- 101: vplar GLgss-A taivg KHSE_FREDI : 107- 111: taivg GLva--A nqlag KHSE_HAEIN : 100- 105: mpigs GLgss-A csiva KHSE_MYCLE : 8- 13: wmlpa GLvas-A vvaas KHSE_MYCLE : 99- 104: iphsr GLgss-A aavvg KHSE_MYCLE : 99- 105: iphsr GLgssaA avvgg KHSE_SERMA : 95- 100: mpigs GLgss-A csvva KHSE_YEAST : 107- 113: iplgr GLgssgA avvag KIME_ARATH : 145- 150: lpygs GLgss-A alcva KIME_ARATH : 145- 151: lpygs GLgssaA lcval KIME_HUMAN : 96- 102: lkeva GLpddcA vterl KIME_HUMAN : 142- 147: lppga GLgss-A aysvc KIME_HUMAN : 142- 148: lppga GLgssaA ysvcl KIME_RAT : 106- 111: cvgne GLsll-A flyly KIME_RAT : 142- 147: lppga GLgss-A aysvc KIME_RAT : 142- 148: lppga GLgssaA ysvcv KIME_RAT : 347- 351: tllkp GLer--A kveaa KIME_SCHPO : 101- 106: kneen GLihs-A mlctl KIME_SCHPO : 137- 142: vplga GLgss-A tisvv KIME_YEAST : 145- 150: lpiga GLgss-A sisvs Number of patterns evaluated by Pratt:3122 Total running time: 6 seconds