------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 12 sequences from file GDS_CDC25 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 12 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GDS_CDC25.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: BUD5_YEAST 538 CC25_CANAL 1333 CC25_SACKL 1095 CC25_YEAST 1589 GNDS_MOUSE 852 GNDS_RAT 895 GNRP_MOUSE 472 GNRP_RAT 1244 LTE1_YEAST 1435 SC25_YEAST 1250 SOS_DROME 1595 STE6_SCHPO 911 Pratt run started at Thu Feb 6 19:33:23 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 15.1802 22( 12) S-x(2,3)-S-S-x(2,4)-L 2: 14.6802 15( 12) L-x(0,2)-L-x-E-x(0,2)-L 3: 14.6802 18( 12) S-x(0,2)-S-L-x(0,2)-L 4: 14.6802 16( 12) L-x(2,4)-E-S-x(0,2)-L 5: 14.6802 17( 12) L-x(0,2)-E-x(3,5)-L-x(2)-E 6: 14.6802 16( 12) L-x(3,5)-S-x(4)-I-x(0,2)-S 7: 14.6802 16( 12) L-x(2,4)-S-x(4)-I-x(0,2)-S 8: 14.6802 15( 12) L-x(3)-L-x(1,3)-L-x(2,4)-I 9: 14.6802 18( 12) L-x(2)-L-x(2,4)-L-x(1,3)-S 10: 14.6802 23( 12) L-x(3)-L-x(2,4)-L-x(0,2)-S 11: 14.6802 18( 12) L-x(2,4)-S-x(0,2)-S-I 12: 14.6802 18( 12) N-x(2)-S-x(2,4)-I-x(1,3)-S 13: 14.6802 17( 12) L-x(2)-L-x(2,4)-S-x(3,5)-E 14: 14.6802 16( 12) L-x-L-x(0,2)-L-x(2,4)-L 15: 14.6802 16( 12) L-x(2)-L-x(2,4)-L-x(2,4)-S 16: 12.5102 17( 12) S-L-x(5)-L 17: 12.5102 25( 12) S-S-L 18: 12.5102 40( 12) S-x(3)-S-S 19: 12.5102 23( 12) L-x(2)-E-x(3)-L 20: 12.5102 24( 12) L-x-D-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 16.8894 17( 12) N-x(2)-S-x(2,4)-I-x(1,3)-S-x(4)-[DNRS] B 2: 15.1802 22( 12) S-x(2,3)-S-S-x(2,4)-L C 3: 14.6802 15( 12) L-x(0,2)-L-x-E-x(0,2)-L D 4: 14.6802 18( 12) S-x(0,2)-S-L-x(0,2)-L E 5: 14.6802 16( 12) L-x(2,4)-E-S-x(0,2)-L F 6: 14.6802 17( 12) L-x(0,2)-E-x(3,5)-L-x(2)-E G 7: 14.6802 16( 12) L-x(3,5)-S-x(4)-I-x(0,2)-S H 8: 14.6802 16( 12) L-x(2,4)-S-x(4)-I-x(0,2)-S I 9: 14.6802 15( 12) L-x(3)-L-x(1,3)-L-x(2,4)-I J 10: 14.6802 18( 12) L-x(2)-L-x(2,4)-L-x(1,3)-S K 11: 14.6802 23( 12) L-x(3)-L-x(2,4)-L-x(0,2)-S L 12: 14.6802 18( 12) L-x(2,4)-S-x(0,2)-S-I M 13: 14.6802 17( 12) L-x(2)-L-x(2,4)-S-x(3,5)-E N 14: 14.6802 16( 12) L-x-L-x(0,2)-L-x(2,4)-L O 15: 14.6802 16( 12) L-x(2)-L-x(2,4)-L-x(2,4)-S P 16: 14.4259 20( 12) S-x(3)-S-S-x-[AILPV] Q 17: 14.1576 21( 12) S-S-L-x(4)-[AENQST] R 18: 12.5102 17( 12) S-L-x(5)-L S 19: 12.5102 25( 12) S-S-L T 20: 12.5102 40( 12) S-x(3)-S-S Best patterns with alignements: fitness hits(seqs) Pattern A 1: 16.8894 17( 12) N-x(2)-S-x(2,4)-I-x(1,3)-S-x(4)-[DNRS] Occurences: 17(12) BUD5_YEAST : 383- 398: clylr NlnSlasiIt--SlqnhS ierls BUD5_YEAST : 383- 398: clylr NlnSlas-Iit-SlqnhS ierls CC25_CANAL : 1155- 1170: kcrqy NnfSsmtaIi--SalysS pihrl CC25_CANAL : 1156- 1170: crqyn NfsSmta-Ii--SalysS pihrl CC25_SACKL : 134- 151: ipsfl NqeSparpIrnfSssttD tlmfs CC25_SACKL : 899- 914: hchel NnfSsltaIi--SalysS piyrl CC25_SACKL : 900- 914: cheln NfsSlta-Ii--SalysS piyrl CC25_YEAST : 1392- 1407: hckel NnfSsmtaIv--SalysS piyrl CC25_YEAST : 1393- 1407: ckeln NfsSmta-Iv--SalysS piyrl GNDS_MOUSE : 416- 430: cralk NfsSlya-Il--SalqsN aihrl GNDS_RAT : 459- 473: crvlk NfsSlya-Il--SalqsN aihrl GNRP_MOUSE : 286- 299: ttkhf NhvSnf--Ia--SeiirN edisa GNRP_RAT : 1058- 1071: ttrhf NhiSnl--Ia--SeilrN eevsa LTE1_YEAST : 435- 450: eeefl NsdSskfdIl--SartiD evesl SC25_YEAST : 1038- 1053: ycrkf NnfSsmtdIi--SalysS piyrl SC25_YEAST : 1039- 1053: crkfn NfsSmtd-Ii--SalysS piyrl SOS_DROME : 1416- 1431: slllp NtsSim--IrrnSaiekR aaats STE6_SCHPO : 749- 763: lreln NfaSlfs-Ii--SalnsS pihrl B 2: 15.1802 22( 12) S-x(2,3)-S-S-x(2,4)-L Occurences: 22(12) BUD5_YEAST : 350- 358: svftl SnqlSSyv--L ettlq CC25_CANAL : 200- 209: emqpp Sqq-SSishtL tgfgi CC25_CANAL : 1165- 1175: mtaii SalySSpihrL kktwe CC25_SACKL : 909- 919: ltaii SalySSpiyrL krtwa CC25_YEAST : 142- 152: pmkky SsskSSrrssL nslgn CC25_YEAST : 143- 152: mkkys Ssk-SSrrssL nslgn CC25_YEAST : 146- 155: ysssk SsrrSSlns-L gnsay CC25_YEAST : 147- 155: sssks Srr-SSlns-L gnsay CC25_YEAST : 1287- 1296: ssslp Ssa-SSaffrL kklkl CC25_YEAST : 1402- 1412: mtaiv SalySSpiyrL kktwd GNDS_MOUSE : 722- 729: vsgvc Sys-SSlp--L ynqqv GNDS_RAT : 765- 772: vsgvc Sys-SSlp--L ynqqv GNRP_MOUSE : 28- 36: gelsa SrkhSSdv--L keese GNRP_RAT : 56- 65: lfyfe Sds-SSrpsgL ylleg GNRP_RAT : 716- 725: kspra SrkfSSppp-L aigts LTE1_YEAST : 361- 369: nsnsr Snt-SSmsv-L hrsai LTE1_YEAST : 934- 942: nqdii Snt-SSlhe-L ktidl SC25_YEAST : 1048- 1058: mtdii SalySSpiyrL ektwq SOS_DROME : 1498- 1507: shpve Sts-SSyahqL rmrqq STE6_SCHPO : 105- 113: vqain Sip-SSeef-L rknlq STE6_SCHPO : 525- 532: lntya Smi-SSsd--L fsilg STE6_SCHPO : 758- 768: lfsii SalnSSpihrL rktwa C 3: 14.6802 15( 12) L-x(0,2)-L-x-E-x(0,2)-L Occurences: 15(12) BUD5_YEAST : 163- 167: ttdna L--LqE--L llsyp BUD5_YEAST : 163- 168: ttdna L--LqEl-L lsypt BUD5_YEAST : 163- 169: ttdna L--LqEllL sypti BUD5_YEAST : 316- 323: slakt Lt-LlEssL yldie CC25_CANAL : 1076- 1083: elarq Lt-LrEfkL yckit CC25_SACKL : 933- 937: eeykk L--LeE--L ntlmd CC25_YEAST : 868- 873: inqnv L--LlEi-L enldl GNDS_MOUSE : 66- 73: vkagt LekLvEh-L vpafq GNDS_RAT : 121- 128: vkagt LekLvEh-L vpafq GNRP_MOUSE : 464- 470: lyess L--LiEpkL pt GNRP_RAT : 390- 395: ipryi Lt-LhE--L lahtp GNRP_RAT : 390- 396: ipryi Lt-LhEl-L ahtph LTE1_YEAST : 128- 134: nitlr Lr-LiEf-L ndkhi SC25_YEAST : 534- 539: dltif Ln-LrE--L gdenr SOS_DROME : 645- 652: ikgat LckLiEr-L tyhiy STE6_SCHPO : 166- 174: fplii LstLdEnfL sevaq STE6_SCHPO : 184- 190: qvfss LnlLpE--L srmgc STE6_SCHPO : 186- 190: fssln L--LpE--L srmgc D 4: 14.6802 18( 12) S-x(0,2)-S-L-x(0,2)-L Occurences: 18(12) BUD5_YEAST : 321- 325: ltlle S--SLy-L dieti CC25_CANAL : 936- 943: llmfs SmmSLgeL islli CC25_SACKL : 1028- 1033: qafie S--SLenL psiek CC25_YEAST : 150- 155: kssrr S--SLnsL gnsay CC25_YEAST : 378- 381: seqnr S--SL--L mekqd CC25_YEAST : 417- 422: neagp S--SLnsL sapdl GNDS_MOUSE : 285- 290: lepav Sq-SLe-L esapv GNDS_MOUSE : 724- 729: gvcsy Ss-SLp-L ynqqv GNDS_MOUSE : 725- 729: vcsys S--SLp-L ynqqv GNDS_RAT : 328- 333: ldptv Sq-SLh-L epapv GNDS_RAT : 767- 772: gvcsy Ss-SLp-L ynqqv GNDS_RAT : 768- 772: vcsys S--SLp-L ynqqv GNRP_MOUSE : 462- 465: eslye S--SL--L iepkl GNRP_RAT : 103- 109: nfsnd SqkSLe-L rtdds LTE1_YEAST : 937- 942: iisnt S--SLheL ktidl SC25_YEAST : 620- 624: epmkp S--SLn-L dnakd SOS_DROME : 1410- 1413: efvgn S--SL--L lpnts SOS_DROME : 1410- 1414: efvgn S--SLl-L pntss STE6_SCHPO : 182- 186: vaqvf S--SLn-L lpels STE6_SCHPO : 182- 187: vaqvf S--SLnlL pelsr E 5: 14.6802 16( 12) L-x(2,4)-E-S-x(0,2)-L Occurences: 16(12) BUD5_YEAST : 316- 323: slakt Ltll-ESs-L yldie CC25_CANAL : 261- 268: fyceq LdvycES--L plilf CC25_CANAL : 261- 270: fyceq LdvycESlpL ilfdg CC25_SACKL : 420- 427: shdek Ldr--ESeeL rkham CC25_YEAST : 1418- 1426: kktwd Lvst-ESkdL lknln GNDS_MOUSE : 42- 50: kgqrw LgcenESa-L nlyet GNDS_MOUSE : 571- 579: ramer Lsea-ESytL scele GNDS_RAT : 97- 105: kgqrw LgcenESa-L nlyet GNDS_RAT : 614- 622: ramgr Lsea-ESynL scele GNRP_MOUSE : 447- 454: kviqy Lld--ESfmL deesl GNRP_MOUSE : 454- 459: desfm Lde--ES--L yessl GNRP_RAT : 1226- 1231: detfv Ldd--ES--L yeasl LTE1_YEAST : 636- 645: plknv LpdlkESspL ndsre SC25_YEAST : 939- 947: hysgt LysttESi-L avdpv SOS_DROME : 1055- 1060: qmsdy Lyn--ES--L riepr STE6_SCHPO : 569- 577: rfldi LliwfESy-L veeld STE6_SCHPO : 570- 577: fldil Liwf-ESy-L veeld F 6: 14.6802 17( 12) L-x(0,2)-E-x(3,5)-L-x(2)-E Occurences: 17(12) BUD5_YEAST : 259- 269: enkpp LdyEnlf--LqyE idktn BUD5_YEAST : 318- 328: aktlt Ll-Essly-LdiE tieft BUD5_YEAST : 319- 328: ktltl L--Essly-LdiE tieft CC25_CANAL : 728- 736: dypvv L--Effr--LkqE lhdlv CC25_SACKL : 49- 61: lgcrl LkhEmvkknLrrE arrll CC25_YEAST : 264- 276: kagpp LvaEetikiLplE eiemi GNDS_MOUSE : 571- 582: ramer Ls-EaesytLscE lepps GNDS_RAT : 614- 625: ramgr Ls-EaesynLscE lepps GNRP_MOUSE : 218- 226: eqhsm L--Eevi--LmtE gvkte GNRP_MOUSE : 447- 457: kviqy LldEsfm--LdeE slyes GNRP_MOUSE : 448- 457: viqyl Ld-Esfm--LdeE slyes GNRP_RAT : 1219- 1229: kvtqy LvdEtfv--LddE slyea LTE1_YEAST : 1317- 1327: tdawr Li-Epgdl-LtwE elkki SC25_YEAST : 238- 247: chyvn Lt-Erdl--LanE rekfl SC25_YEAST : 691- 702: fdvlk LaiEfvnq-LilE renll SOS_DROME : 430- 440: plhcd L--EkvmasLskE rqvpv STE6_SCHPO : 631- 639: rshkm L--Egke--LsqE ledls G 7: 14.6802 16( 12) L-x(3,5)-S-x(4)-I-x(0,2)-S Occurences: 16(12) BUD5_YEAST : 381- 393: lacly Lrnln-SlasiIt-S lqnhs CC25_CANAL : 1103- 1117: gkksg LsesidSitqfIkaS nqltn CC25_SACKL : 820- 832: dyakq LtikehSlfykI--S pfecl CC25_SACKL : 898- 909: ahche Lnnfs-SltaiI--S alyss CC25_SACKL : 898- 909: ahche Lnnf--SsltaIi-S alyss CC25_YEAST : 314- 325: yynkd Ldiyc-SelplI--S nsime CC25_YEAST : 314- 327: yynkd Ldiyc-SelplIsnS imesd CC25_YEAST : 1391- 1402: qhcke Lnnf--SsmtaIv-S alyss GNDS_MOUSE : 414- 425: recra Lknf--SslyaIl-S alqsn GNDS_RAT : 457- 468: recrv Lknf--SslyaIl-S alqsn GNRP_MOUSE : 411- 421: ytedg Lvnf--SkmrmI--S hiire GNRP_RAT : 1183- 1193: ytedg Lvnf--SkmrmI--S hiire LTE1_YEAST : 434- 445: eeeef Lnsd--SskfdIl-S artid LTE1_YEAST : 831- 843: nkksa LysdtsStvisI--S tsklf LTE1_YEAST : 831- 845: nkksa LysdtsStvisIstS klfes SC25_YEAST : 119- 131: qagln Lklel-SsnpvIl-S ledfl SC25_YEAST : 565- 577: edkef Lkhsl-SslsyIl-S dyfnm SOS_DROME : 403- 415: dyikh Lkdls-SsqddIe-S feqvq STE6_SCHPO : 747- 758: dylre Lnnfa-SlfsiI--S alnss H 8: 14.6802 16( 12) L-x(2,4)-S-x(4)-I-x(0,2)-S Occurences: 16(12) BUD5_YEAST : 381- 393: lacly LrnlnSlasiIt-S lqnhs CC25_CANAL : 538- 549: ivkif Lkl--SankkIknS dydss CC25_SACKL : 898- 909: ahche LnnfsSltaiI--S alyss CC25_SACKL : 898- 909: ahche Lnnf-SsltaIi-S alyss CC25_YEAST : 314- 325: yynkd LdiycSelplI--S nsime CC25_YEAST : 314- 327: yynkd LdiycSelplIsnS imesd CC25_YEAST : 1391- 1402: qhcke Lnnf-SsmtaIv-S alyss GNDS_MOUSE : 414- 425: recra Lknf-SslyaIl-S alqsn GNDS_RAT : 457- 468: recrv Lknf-SslyaIl-S alqsn GNRP_MOUSE : 411- 421: ytedg Lvnf-SkmrmI--S hiire GNRP_RAT : 1183- 1193: ytedg Lvnf-SkmrmI--S hiire LTE1_YEAST : 434- 445: eeeef Lnsd-SskfdIl-S artid SC25_YEAST : 119- 131: qagln LklelSsnpvIl-S ledfl SC25_YEAST : 121- 131: glnlk Lel--SsnpvIl-S ledfl SC25_YEAST : 565- 577: edkef LkhslSslsyIl-S dyfnm SOS_DROME : 304- 315: evtvt Llg--SledvIemS qeqsa SOS_DROME : 403- 415: dyikh LkdlsSsqddIe-S feqvq STE6_SCHPO : 747- 758: dylre LnnfaSlfsiI--S alnss I 9: 14.6802 15( 12) L-x(3)-L-x(1,3)-L-x(2,4)-I Occurences: 15(12) BUD5_YEAST : 163- 174: ttdna LlqeLl--LsyptI nknkh BUD5_YEAST : 319- 330: ktltl LessLy--LdietI eftrh CC25_CANAL : 733- 744: leffr LkqeLhd-Lvak-I imatq CC25_CANAL : 733- 745: leffr LkqeLhd-LvakiI matqs CC25_CANAL : 1022- 1035: slgnl LvnyLerlLrgerI yverd CC25_SACKL : 650- 663: hqsid LsfnLamlLtfrsI fttge CC25_YEAST : 869- 880: nqnvl LleiLen-Ldls-I finlk GNDS_MOUSE : 420- 432: knfss LyaiLsa-LqsnaI hrlkk GNDS_RAT : 463- 475: knfss LyaiLsa-LqsnaI hrlkk GNRP_MOUSE : 389- 399: pcvpy LgmyLtd-Lvf--I eegtp GNRP_RAT : 641- 653: asver LlerLtd-LrflsI dflnt LTE1_YEAST : 126- 139: lpnit LrlrLiefLndkhI eqypk SC25_YEAST : 565- 575: edkef LkhsLss-Lsy--I lsdyf SOS_DROME : 591- 602: itksm LdrhLdsiLqd--I erkhp STE6_SCHPO : 362- 374: alkde LssnLcd-LylwsI dleqi STE6_SCHPO : 395- 406: slfvd LlvtLkvsLlr--I ksiiv J 10: 14.6802 18( 12) L-x(2)-L-x(2,4)-L-x(1,3)-S Occurences: 18(12) BUD5_YEAST : 376- 386: wlqva LacLylrnLn--S lasii BUD5_YEAST : 381- 389: lacly LrnLns--La--S iitsl CC25_CANAL : 125- 136: vvmps LtnLiqksLqe-S ernsp CC25_SACKL : 934- 943: eykkl LeeLnt--Lmd-S aknfi CC25_YEAST : 870- 879: qnvll LeiLen--Ldl-S ifinl CC25_YEAST : 1427- 1436: eskdl LknLnn--Lmd-S krnfv GNDS_MOUSE : 190- 199: rahll LaqLed--Lep-S eaese GNDS_RAT : 233- 242: rahll LaqLed--Lep-S evepe GNRP_MOUSE : 245- 255: eiaeq LtlLdh--LvfkS ipyee GNRP_MOUSE : 358- 366: qtksl LdkLqk--Lv--S sdgrf GNRP_MOUSE : 358- 367: qtksl LdkLqk--Lvs-S dgrfk GNRP_RAT : 642- 652: sverl LerLtd--LrflS idfln GNRP_RAT : 1017- 1027: eiaeq LtlLdh--LvfkS ipyee LTE1_YEAST : 34- 43: vnsad LpaLivh-Ls--S plegv LTE1_YEAST : 939- 950: sntss LheLktidLsd-S nndle SC25_YEAST : 283- 294: sfkkt LkkLiyt-LsrfS inani SOS_DROME : 106- 117: lclrl LamLcakpLph-S vqdve STE6_SCHPO : 396- 408: lfvdl LvtLkvslLrikS iivqf STE6_SCHPO : 612- 623: saeel LhsLshl-LhhpS tkrsh K 11: 14.6802 23( 12) L-x(3)-L-x(2,4)-L-x(0,2)-S Occurences: 23(12) BUD5_YEAST : 312- 321: vspws LaktLtl--Le-S slyld BUD5_YEAST : 312- 322: vspws LaktLtl--LesS lyldi CC25_CANAL : 786- 795: kaall LssiLkeq-L--S fkdgg CC25_CANAL : 912- 921: gskea LvshLthh-L--S ldsnf CC25_SACKL : 933- 943: eeykk LleeLnt--LmdS aknfi CC25_YEAST : 869- 879: nqnvl LleiLenldL--S ifinl CC25_YEAST : 869- 879: nqnvl LleiLen--LdlS ifinl CC25_YEAST : 981- 991: kkneq LalsLfhv-Lv-S qdvef CC25_YEAST : 1426- 1436: teskd LlknLnn--LmdS krnfv GNDS_MOUSE : 189- 199: rrahl LlaqLed--LepS eaese GNDS_MOUSE : 420- 429: knfss LyaiLsa--Lq-S naihr GNDS_RAT : 53- 62: hsftq LdpdLpr--Le-S stqei GNDS_RAT : 53- 63: hsftq LdpdLpr--LesS tqeig GNDS_RAT : 232- 242: rrahl LlaqLed--LepS evepe GNDS_RAT : 463- 472: knfss LyaiLsa--Lq-S naihr GNRP_MOUSE : 357- 366: kqtks LldkLqk--Lv-S sdgrf GNRP_MOUSE : 357- 367: kqtks LldkLqk--LvsS dgrfk GNRP_RAT : 1129- 1138: kqtks LfdkLqk--Lv-S sdgrf GNRP_RAT : 1129- 1139: kqtks LfdkLqk--LvsS dgrfk LTE1_YEAST : 632- 642: mtssp LknvLpd--LkeS splnd SC25_YEAST : 338- 346: qkfhf LlrlLhf--L--S npnel SC25_YEAST : 565- 573: edkef LkhsLss--L--S yilsd SOS_DROME : 105- 117: klclr LlamLcakpLphS vqdve SOS_DROME : 1232- 1244: vfspa LpehLppqsLpdS npfas STE6_SCHPO : 159- 167: vrsmv LsfpLii--L--S tlden STE6_SCHPO : 362- 373: alkde LssnLcdlyLw-S idleq STE6_SCHPO : 391- 402: ldnys LfvdLlvt-LkvS llrik STE6_SCHPO : 636- 644: legke LsqeLed--L--S lhnsp STE6_SCHPO : 636- 648: legke LsqeLedlsLhnS pdpii L 12: 14.6802 18( 12) L-x(2,4)-S-x(0,2)-S-I Occurences: 18(12) BUD5_YEAST : 381- 390: lacly LrnlnSlaSI itslq CC25_CANAL : 784- 789: kekaa Lll--S--SI lkeql CC25_CANAL : 1103- 1110: gkksg Lse--SidSI tqfik CC25_SACKL : 639- 648: tkeal LehltShqSI dlsfn CC25_YEAST : 321- 328: iycse Lpli-Sn-SI mesdd CC25_YEAST : 527- 536: kifkg LisslSriSI nshly GNDS_MOUSE : 138- 145: gpqdq LknaiS--SI lgtwl GNDS_RAT : 181- 188: gpqdq LknaiS--SI lgtwl GNRP_MOUSE : 329- 335: nynav Leit-S--SI nrsai GNRP_RAT : 1101- 1107: nynav Leit-S--SI nrsai LTE1_YEAST : 195- 204: tqles LhkrgSrlSI yarqs LTE1_YEAST : 514- 521: mdnld LyqtvS--SI aqsvi SC25_YEAST : 286- 295: ktlkk LiytlSrfSI naniw SOS_DROME : 1129- 1134: asaps Lha--S--SI mdapt SOS_DROME : 1413- 1420: gnssl LlpntS--SI mirrn SOS_DROME : 1414- 1420: nssll Lpnt-S--SI mirrn STE6_SCHPO : 581- 587: ylvee Ldn--Sk-SI fflfk STE6_SCHPO : 747- 756: dylre LnnfaSlfSI isaln M 13: 14.6802 17( 12) L-x(2)-L-x(2,4)-S-x(3,5)-E Occurences: 17(12) BUD5_YEAST : 316- 328: slakt LtlLes--SlyldiE tieft CC25_CANAL : 125- 137: vvmps LtnLiqk-Slqes-E rnspa CC25_CANAL : 445- 457: ngilh LsvLhy--SlegfnE grlfg CC25_SACKL : 503- 513: kfaee LrnLli--Sqdv--E yndla CC25_SACKL : 654- 668: dlsfn LamLltfrSifttgE flqal CC25_YEAST : 884- 898: sifin LknLiktpSilldlE seefl GNDS_MOUSE : 193- 204: lllaq LedLep--Seaes-E alspa GNDS_RAT : 57- 69: qldpd LprLes--StqeigE eling GNDS_RAT : 236- 247: lllaq LedLep--Sevep-E alspa GNRP_MOUSE : 248- 259: eqltl LdhLvfk-Sipy--E effgq GNRP_MOUSE : 248- 260: eqltl LdhLvfk-Sipye-E ffgqg GNRP_RAT : 1020- 1031: eqltl LdhLvfk-Sipy--E effgq GNRP_RAT : 1020- 1032: eqltl LdhLvfk-Sipye-E ffgqg LTE1_YEAST : 34- 46: vnsad LpaLivhlSspl--E gvdyn SC25_YEAST : 338- 350: qkfhf LlrLlhflSnpn--E ltilp SC25_YEAST : 339- 350: kfhfl LrlLhfl-Snpn--E ltilp SOS_DROME : 403- 414: dyikh LkdLss--Sqddi-E sfeqv SOS_DROME : 1258- 1268: appsp LpkLvv--Sprh--E tgnrs STE6_SCHPO : 366- 377: elssn LcdLylw-Sidl--E qisps N 14: 14.6802 16( 12) L-x-L-x(0,2)-L-x(2,4)-L Occurences: 16(12) BUD5_YEAST : 316- 323: slakt LtL--Less-L yldie BUD5_YEAST : 379- 387: valac LyLrnLns--L asiit CC25_CANAL : 443- 452: yingi LhLsvLhys-L egfne CC25_SACKL : 806- 814: frmrk LkL--LdidsL dyakq CC25_YEAST : 868- 876: inqnv LlLeiLen--L dlsif CC25_YEAST : 868- 878: inqnv LlLeiLenldL sifin CC25_YEAST : 981- 989: kkneq LaLs-Lfhv-L vsqdv GNDS_MOUSE : 188- 196: errah LlLaqLed--L epsea GNDS_RAT : 231- 239: errah LlLaqLed--L epsev GNRP_MOUSE : 245- 251: eiaeq LtL--Ldh--L vfksi GNRP_RAT : 317- 326: aswpt LvLadLfdi-L lpmln GNRP_RAT : 317- 327: aswpt LvLadLfdilL pmlni GNRP_RAT : 1017- 1023: eiaeq LtL--Ldh--L vfksi LTE1_YEAST : 126- 134: lpnit LrLr-Lief-L ndkhi SC25_YEAST : 339- 345: kfhfl LrL--Lhf--L snpne SOS_DROME : 101- 109: lyvek LcLrlLam--L cakpl SOS_DROME : 101- 109: lyvek LcLr-Llam-L cakpl SOS_DROME : 103- 109: veklc LrL--Lam--L cakpl STE6_SCHPO : 184- 190: qvfss LnL--Lpe--L srmgc O 15: 14.6802 16( 12) L-x(2)-L-x(2,4)-L-x(2,4)-S Occurences: 16(12) BUD5_YEAST : 376- 389: wlqva LacLylrnLnslaS iitsl CC25_CANAL : 125- 136: vvmps LtnLiqksLqe--S ernsp CC25_SACKL : 934- 943: eykkl LeeLnt--Lmd--S aknfi CC25_YEAST : 870- 879: qnvll LeiLen--Ldl--S ifinl CC25_YEAST : 1427- 1436: eskdl LknLnn--Lmd--S krnfv GNDS_MOUSE : 190- 199: rahll LaqLed--Lep--S eaese GNDS_RAT : 233- 242: rahll LaqLed--Lep--S evepe GNRP_MOUSE : 245- 255: eiaeq LtlLdh--Lvfk-S ipyee GNRP_MOUSE : 358- 367: qtksl LdkLqk--Lvs--S dgrfk GNRP_RAT : 642- 652: sverl LerLtd--Lrfl-S idfln GNRP_RAT : 1017- 1027: eiaeq LtlLdh--Lvfk-S ipyee LTE1_YEAST : 939- 950: sntss LheLktidLsd--S nndle SC25_YEAST : 283- 294: sfkkt LkkLiyt-Lsrf-S inani SOS_DROME : 106- 117: lclrl LamLcakpLph--S vqdve STE6_SCHPO : 396- 408: lfvdl LvtLkvslLrik-S iivqf STE6_SCHPO : 396- 408: lfvdl LvtLkvs-LlrikS iivqf STE6_SCHPO : 612- 623: saeel LhsLshl-Lhhp-S tkrsh STE6_SCHPO : 612- 623: saeel LhsLsh--LlhhpS tkrsh P 16: 14.4259 20( 12) S-x(3)-S-S-x-[AILPV] Occurences: 20(12) BUD5_YEAST : 350- 357: svftl SnqlSSyV lettl CC25_CANAL : 549- 556: kkikn SdydSSdA sddeg CC25_CANAL : 1165- 1172: mtaii SalySSpI hrlkk CC25_SACKL : 309- 316: sskat StasSSnA khsit CC25_SACKL : 909- 916: ltaii SalySSpI yrlkr CC25_YEAST : 42- 49: ntess SaslSSsP stsel CC25_YEAST : 170- 177: rnpsk SrrgSStL sasls CC25_YEAST : 1402- 1409: mtaiv SalySSpI yrlkk GNDS_MOUSE : 695- 702: itsas SstsSSsA sttpv GNDS_RAT : 738- 745: issas SstsSSsA sttpv GNRP_MOUSE : 28- 35: gelsa SrkhSSdV lkees GNRP_MOUSE : 458- 465: mldee SlyeSSlL iepkl GNRP_RAT : 716- 723: kspra SrkfSSpP plaig LTE1_YEAST : 661- 668: tysyd SelsSSsP prdtv LTE1_YEAST : 745- 752: kkldn SldaSSeA nnydi SC25_YEAST : 1048- 1055: mtdii SalySSpI yrlek SOS_DROME : 1102- 1109: ssskl SnstSSvA aaaaa STE6_SCHPO : 53- 60: gwfpt ScidSSkI qnffs STE6_SCHPO : 525- 532: lntya SmisSSdL fsilg STE6_SCHPO : 758- 765: lfsii SalnSSpI hrlrk Q 17: 14.1576 21( 12) S-S-L-x(4)-[AENQST] Occurences: 21(12) BUD5_YEAST : 321- 328: ltlle SSLyldiE tieft CC25_CANAL : 482- 489: fqspa SSLstirQ gsdds CC25_SACKL : 902- 909: elnnf SSLtaiiS alyss CC25_SACKL : 1028- 1035: qafie SSLenlpS iekqy CC25_YEAST : 150- 157: kssrr SSLnslgN saylh CC25_YEAST : 378- 385: seqnr SSLlmekQ dsket CC25_YEAST : 417- 424: neagp SSLnslsA pdltq CC25_YEAST : 1283- 1290: ihmss SSLpssaS saffr GNDS_MOUSE : 418- 425: alknf SSLyailS alqsn GNDS_MOUSE : 725- 732: vcsys SSLplynQ qvgdc GNDS_RAT : 461- 468: vlknf SSLyailS alqsn GNDS_RAT : 768- 775: vcsys SSLplynQ qvgdc GNRP_MOUSE : 3- 10: ma SSLpktpE eidvp GNRP_RAT : 787- 794: klcva SSLtrtpE eidmt LTE1_YEAST : 349- 356: gtstt SSLdnnsN snsrs LTE1_YEAST : 419- 426: yvvsi SSLnrksS keeee LTE1_YEAST : 937- 944: iisnt SSLhelkT idlsd SC25_YEAST : 570- 577: lkhsl SSLsyilS dyfnm SC25_YEAST : 620- 627: epmkp SSLnldnA kdkkn SOS_DROME : 1410- 1417: efvgn SSLllpnT ssimi STE6_SCHPO : 182- 189: vaqvf SSLnllpE lsrmg R 18: 12.5102 17( 12) S-L-x(5)-L Occurences: 17(12) BUD5_YEAST : 311- 318: nvspw SLaktltL lessl CC25_CANAL : 803- 810: dggai SLnpdtlL sgylv CC25_CANAL : 939- 946: fssmm SLgelisL liarf CC25_SACKL : 813- 820: lldid SLdyakqL tikeh CC25_YEAST : 154- 161: rssln SLgnsayL hvprn GNDS_MOUSE : 213- 220: papvl SLkpasqL epall GNDS_MOUSE : 273- 280: qepep SLalapeL epavs GNDS_RAT : 256- 263: papvl SLkpasqL epapa GNRP_MOUSE : 458- 465: mldee SLyesslL iepkl GNRP_MOUSE : 463- 470: slyes SLliepkL pt GNRP_RAT : 519- 526: kngvi SLidctlL ddpen GNRP_RAT : 1235- 1242: slyea SLriepkL pt LTE1_YEAST : 185- 192: awlhy SLkdftqL eslhk LTE1_YEAST : 328- 335: efiln SLyipedL neqsg SC25_YEAST : 652- 659: epdpd SLilfhnL inqds SOS_DROME : 1560- 1567: fpiat SLegtpkL ppkps STE6_SCHPO : 183- 190: aqvfs SLnllpeL srmgc S 19: 12.5102 25( 12) S-S-L Occurences: 25(12) BUD5_YEAST : 321- 323: ltlle SSL yldie CC25_CANAL : 482- 484: fqspa SSL stirq CC25_CANAL : 1056- 1058: pltkg SSL skkpr CC25_SACKL : 902- 904: elnnf SSL taiis CC25_SACKL : 1028- 1030: qafie SSL enlps CC25_YEAST : 150- 152: kssrr SSL nslgn CC25_YEAST : 378- 380: seqnr SSL lmekq CC25_YEAST : 417- 419: neagp SSL nslsa CC25_YEAST : 529- 531: fkgli SSL srisi CC25_YEAST : 1283- 1285: ihmss SSL pssas GNDS_MOUSE : 418- 420: alknf SSL yails GNDS_MOUSE : 725- 727: vcsys SSL plynq GNDS_RAT : 461- 463: vlknf SSL yails GNDS_RAT : 768- 770: vcsys SSL plynq GNRP_MOUSE : 3- 5: ma SSL pktpe GNRP_MOUSE : 462- 464: eslye SSL liepk GNRP_RAT : 787- 789: klcva SSL trtpe LTE1_YEAST : 349- 351: gtstt SSL dnnsn LTE1_YEAST : 419- 421: yvvsi SSL nrkss LTE1_YEAST : 937- 939: iisnt SSL helkt SC25_YEAST : 570- 572: lkhsl SSL syils SC25_YEAST : 620- 622: epmkp SSL nldna SOS_DROME : 365- 367: skpga SSL ttagh SOS_DROME : 1410- 1412: efvgn SSL llpnt STE6_SCHPO : 182- 184: vaqvf SSL nllpe T 20: 12.5102 40( 12) S-x(3)-S-S Occurences: 40(12) BUD5_YEAST : 350- 355: svftl SnqlSS yvlet CC25_CANAL : 549- 554: kkikn SdydSS dasdd CC25_CANAL : 1165- 1170: mtaii SalySS pihrl CC25_SACKL : 309- 314: sskat StasSS nakhs CC25_SACKL : 772- 777: esinf SddgSS tttvp CC25_SACKL : 909- 914: ltaii SalySS piyrl CC25_YEAST : 25- 30: asqtp SissSS ntstt CC25_YEAST : 42- 47: ntess SaslSS spsts CC25_YEAST : 142- 147: pmkky SsskSS rrssl CC25_YEAST : 146- 151: ysssk SsrrSS lnslg CC25_YEAST : 170- 175: rnpsk SrrgSS tlsas CC25_YEAST : 233- 238: qdmtk SadgSS emntn CC25_YEAST : 741- 746: evtas SsknSS isrip CC25_YEAST : 1283- 1288: ihmss SslpSS assaf CC25_YEAST : 1402- 1407: mtaiv SalySS piyrl CC25_YEAST : 1549- 1554: gntkg SthaSS asgtk GNDS_MOUSE : 649- 654: alsvh SagsSS sdvee GNDS_MOUSE : 679- 684: kkfwe SasqSS petsg GNDS_MOUSE : 694- 699: gitsa SsstSS ssast GNDS_MOUSE : 695- 700: itsas SstsSS sastt GNDS_MOUSE : 696- 701: tsass StssSS asttp GNDS_RAT : 676- 681: dqlrc SpylSS gditd GNDS_RAT : 722- 727: kkfwe SasqSS petsg GNDS_RAT : 734- 739: etsgi SsasSS tssss GNDS_RAT : 737- 742: gissa SsstSS ssast GNDS_RAT : 738- 743: issas SstsSS sastt GNDS_RAT : 739- 744: ssass StssSS asttp GNRP_MOUSE : 28- 33: gelsa SrkhSS dvlke GNRP_MOUSE : 458- 463: mldee SlyeSS lliep GNRP_RAT : 716- 721: kspra SrkfSS pppla LTE1_YEAST : 661- 666: tysyd SelsSS spprd LTE1_YEAST : 745- 750: kkldn SldaSS eanny SC25_YEAST : 1048- 1053: mtdii SalySS piyrl SOS_DROME : 1102- 1107: ssskl SnstSS vaaaa SOS_DROME : 1128- 1133: tasap SlhaSS imdap SOS_DROME : 1468- 1473: lplpi SpaaSS sttts STE6_SCHPO : 53- 58: gwfpt ScidSS kiqnf STE6_SCHPO : 65- 70: iqnff SsfhSS nekdp STE6_SCHPO : 525- 530: lntya SmisSS dlfsi STE6_SCHPO : 758- 763: lfsii SalnSS pihrl Number of patterns evaluated by Pratt:24676 Total running time: 54 seconds