------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 23 sequences from file GATASE_TYPE_II PATTERN CONSERVATION: CM: min Nr of Seqs to Match 23 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GATASE_TYPE_II.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ASN1_ASPOF 589 ASN1_PEA 585 ASN2_PEA 582 ASNB_ECOLI 554 ASNS_CRIGR 560 ASNS_HUMAN 560 ASNS_MESAU 560 GFA1_SCHPO 695 GFA1_YEAST 716 GFAT_HUMAN 680 GLMS_BACSU 599 GLMS_ECOLI 608 GLMS_HAEIN 609 NODM_RHILV 607 NODM_RHIME 604 PUR1_BACSU 476 PUR1_CHICK 510 PUR1_ECOLI 504 PUR1_HAEIN 504 PUR1_HUMAN 517 PUR1_RAT 517 PUR1_SCHPO 533 PUR1_YEAST 510 Pratt run started at Thu Feb 6 19:32:24 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.5102 23( 23) N-G-x(3)-N 2: 11.5102 26( 23) L-x(0,1)-H-x(3,4)-A 3: 11.5102 51( 23) L-x(2,3)-G-x(0,1)-L 4: 11.5102 43( 23) L-x(2,3)-S-x(0,1)-V 5: 11.5102 55( 23) L-x(0,1)-A-x(3,4)-V 6: 11.5102 48( 23) L-x(0,2)-A-x(4)-V 7: 11.5102 39( 23) A-x(1,2)-E-x(1,2)-V 8: 11.5102 57( 23) L-x(2,3)-R-x(4,5)-G 9: 11.5102 62( 23) A-x(3,4)-A-x(2,3)-G 10: 11.5102 44( 23) V-x(0,1)-A-x(3,4)-G 11: 11.5102 34( 23) G-I-x(0,2)-V 12: 11.5102 23( 23) E-x(0,1)-Y-x(1,2)-Y 13: 11.5102 41( 23) G-x(2,3)-L-x(0,1)-I 14: 11.5102 37( 23) G-x(2,3)-L-x(4,5)-P 15: 11.5102 42( 23) G-x(1,2)-A-x(0,1)-V 16: 11.5102 40( 23) G-x(3,4)-V-x(2,3)-S 17: 11.5102 35( 23) P-x(0,1)-L-x(1,2)-G 18: 11.5102 37( 23) G-x(3)-L-x(2,4)-G 19: 11.5102 41( 23) G-x(3)-L-x(1,3)-G 20: 11.5102 39( 23) G-x(3,4)-L-x(2,3)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 19.3637 23( 23) N-G-x-[IL]-x-N-x(3)-[LM] B 2: 16.0880 25( 23) L-x(2,3)-R-x(4,5)-G-[ILV]-x(3)-[ADGNV] C 3: 16.0771 23( 23) N-G-x(3)-N-x(3)-[LM] D 4: 11.5102 26( 23) L-x(0,1)-H-x(3,4)-A E 5: 11.5102 51( 23) L-x(2,3)-G-x(0,1)-L F 6: 11.5102 43( 23) L-x(2,3)-S-x(0,1)-V G 7: 11.5102 55( 23) L-x(0,1)-A-x(3,4)-V H 8: 11.5102 48( 23) L-x(0,2)-A-x(4)-V I 9: 11.5102 39( 23) A-x(1,2)-E-x(1,2)-V J 10: 11.5102 62( 23) A-x(3,4)-A-x(2,3)-G K 11: 11.5102 44( 23) V-x(0,1)-A-x(3,4)-G L 12: 11.5102 34( 23) G-I-x(0,2)-V M 13: 11.5102 23( 23) E-x(0,1)-Y-x(1,2)-Y N 14: 11.5102 41( 23) G-x(2,3)-L-x(0,1)-I O 15: 11.5102 37( 23) G-x(2,3)-L-x(4,5)-P P 16: 11.5102 42( 23) G-x(1,2)-A-x(0,1)-V Q 17: 11.5102 40( 23) G-x(3,4)-V-x(2,3)-S R 18: 11.5102 35( 23) P-x(0,1)-L-x(1,2)-G S 19: 11.5102 37( 23) G-x(3)-L-x(2,4)-G T 20: 11.5102 41( 23) G-x(3)-L-x(1,3)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 19.3637 23( 23) N-G-x-[IL]-x-N-x(3)-[LM] Occurences: 23(23) ASN1_ASPOF : 74- 83: ivvtv NGeIyNheeL rrrlp ASN1_PEA : 74- 83: iivtv NGeIyNheeL rkqlp ASN2_PEA : 74- 83: sivtv NGeIyNhedL rkqls ASNB_ECOLI : 75- 84: hvlav NGeIyNhqaL raeyg ASNS_CRIGR : 74- 83: lwlcy NGeIyNhkaL qqrfe ASNS_HUMAN : 74- 83: lwlcy NGeIyNhkkM qqhfe ASNS_MESAU : 74- 83: lwlcy NGeIyNhkaL qqrfe GFA1_SCHPO : 114- 123: fivvh NGiLtNyreL rtvle GFA1_YEAST : 114- 123: fvvvh NGiItNfreL ktlli GFAT_HUMAN : 122- 131: fivih NGiItNykdL kkfle GLMS_BACSU : 98- 107: ftlvh NGvIeNyvqL kqeyl GLMS_ECOLI : 98- 107: ivvvh NGiIeNhepL reelk GLMS_HAEIN : 98- 107: favvh NGiIeNheeL rellk NODM_RHILV : 97- 106: vavvh NGiIeNfskL kdala NODM_RHIME : 97- 106: vavvh NGiIeNfaeL kdela PUR1_BACSU : 113- 122: lalah NGnLvNatqL kqqle PUR1_CHICK : 122- 131: iavah NGeLtNavrL rrklm PUR1_ECOLI : 101- 110: itlah NGnLtNaheL rkklf PUR1_HAEIN : 101- 110: vtlvh NGnLtNsveL kekvf PUR1_HUMAN : 122- 131: iavah NGeLvNaarL rkkll PUR1_RAT : 122- 131: iavah NGeLvNaarL rkkll PUR1_SCHPO : 105- 114: lvlgh NGnLiNgpeL rrfld PUR1_YEAST : 104- 113: inlah NGnLvNtasL krymd B 2: 16.0880 25( 23) L-x(2,3)-R-x(4,5)-G-[ILV]-x(3)-[ADGNV] Occurences: 25(23) ASN1_ASPOF : 27- 41: elsrr Lkh-RgpdwsGLcqhG dcfls ASN1_PEA : 27- 41: elsrr Lkh-RgpdwsGLhqhG dnyla ASN2_PEA : 27- 41: elsrr Lkh-RgpewsGLhqhG dcyla ASNB_ECOLI : 27- 42: lelsr LmrhRgpdwsGIyasD naila ASNS_CRIGR : 402- 417: ylfdv LradRttaahGLelrV pfldh ASNS_HUMAN : 402- 417: ylfdv LradRttaahGLelrV pfldh ASNS_MESAU : 402- 417: ylfdv LradRttaahGLelrV pfldh GFA1_SCHPO : 515- 529: dsvsr Ler-RneiidGLaeiG ekvqe GFA1_YEAST : 29- 43: dglqr Ley-RgydstGIaidG deads GFAT_HUMAN : 29- 43: kglqr Ley-RgydsaGVgfdG gndkd GLMS_BACSU : 23- 37: kglek Ley-RgydsaGIavaN eqgih GLMS_ECOLI : 23- 37: eglrr Ley-RgydsaGLavvD aeghm GLMS_HAEIN : 23- 37: nglhr Ley-RgydsaGVaviN kqnel NODM_RHILV : 353- 368: etadt LaslRyckahGLrigA vvntr NODM_RHIME : 23- 37: ealep Ley-RgydsaGVatmD agtlq NODM_RHIME : 351- 366: etadt LaslRyckahGLrigA vvnar PUR1_BACSU : 34- 48: yglhs Lqh-RgqegaGIvatD geklt PUR1_CHICK : 40- 54: lglvg Lqh-RgqesaGIvtsD gessq PUR1_ECOLI : 23- 37: daltv Lqh-RgqdaaGIitiD anncf PUR1_HAEIN : 22- 37: yaalt LlqhRgqdaaGIvtvD denrf PUR1_HAEIN : 23- 37: aaltl Lqh-RgqdaaGIvtvD denrf PUR1_HUMAN : 40- 54: lglvg Lqh-RgqesaGIvtsD gssvp PUR1_RAT : 40- 54: lglvg Lqh-RgqesaGIvtsD gssvp PUR1_SCHPO : 27- 41: eglys Lqh-RgqdaaGIvtaG nkgrl PUR1_YEAST : 27- 41: dgcif Lqh-RgqdaaGIatcG srgrv C 3: 16.0771 23( 23) N-G-x(3)-N-x(3)-[LM] Occurences: 23(23) ASN1_ASPOF : 74- 83: ivvtv NGeiyNheeL rrrlp ASN1_PEA : 74- 83: iivtv NGeiyNheeL rkqlp ASN2_PEA : 74- 83: sivtv NGeiyNhedL rkqls ASNB_ECOLI : 75- 84: hvlav NGeiyNhqaL raeyg ASNS_CRIGR : 74- 83: lwlcy NGeiyNhkaL qqrfe ASNS_HUMAN : 74- 83: lwlcy NGeiyNhkkM qqhfe ASNS_MESAU : 74- 83: lwlcy NGeiyNhkaL qqrfe GFA1_SCHPO : 114- 123: fivvh NGiltNyreL rtvle GFA1_YEAST : 114- 123: fvvvh NGiitNfreL ktlli GFAT_HUMAN : 122- 131: fivih NGiitNykdL kkfle GLMS_BACSU : 98- 107: ftlvh NGvieNyvqL kqeyl GLMS_ECOLI : 98- 107: ivvvh NGiieNhepL reelk GLMS_HAEIN : 98- 107: favvh NGiieNheeL rellk NODM_RHILV : 97- 106: vavvh NGiieNfskL kdala NODM_RHIME : 97- 106: vavvh NGiieNfaeL kdela PUR1_BACSU : 113- 122: lalah NGnlvNatqL kqqle PUR1_CHICK : 122- 131: iavah NGeltNavrL rrklm PUR1_ECOLI : 101- 110: itlah NGnltNaheL rkklf PUR1_HAEIN : 101- 110: vtlvh NGnltNsveL kekvf PUR1_HUMAN : 122- 131: iavah NGelvNaarL rkkll PUR1_RAT : 122- 131: iavah NGelvNaarL rkkll PUR1_SCHPO : 105- 114: lvlgh NGnliNgpeL rrfld PUR1_YEAST : 104- 113: inlah NGnlvNtasL krymd D 4: 11.5102 26( 23) L-x(0,1)-H-x(3,4)-A Occurences: 26(23) ASN1_ASPOF : 45- 51: hgdcf LsHqrl-A iidpa ASN1_PEA : 45- 51: hgdny LaHqrl-A ivdpa ASN2_PEA : 209- 216: ydpla LrHafekA vvkrl ASNB_ECOLI : 381- 387: rklla L-HmydcA ranka ASNS_CRIGR : 551- 557: psart LtHyks-A aka ASNS_CRIGR : 551- 558: psart LtHyksaA ka ASNS_HUMAN : 551- 557: psart LtHyks-A vka ASNS_MESAU : 551- 557: psart LtHyks-A aka ASNS_MESAU : 551- 558: psart LtHyksaA ka GFA1_SCHPO : 536- 541: kvqet L-Hlna-A ikqta GFA1_SCHPO : 591- 597: vlage LkHgvl-A lvdnd GFA1_YEAST : 267- 274: anefn LrHsqsrA flsed GFA1_YEAST : 606- 612: vlage LkHgvl-A lvden GFAT_HUMAN : 574- 580: ilage LkHgpl-A lvdkl GLMS_BACSU : 497- 503: fagge LkHgti-A lieqg GLMS_ECOLI : 502- 508: yaage LkHgpl-A lidad GLMS_HAEIN : 503- 509: yaage LkHgpl-A lidad NODM_RHILV : 41- 46: ifege L-Hrrr-A egklg NODM_RHILV : 500- 506: yaage LkHgpi-A liden NODM_RHIME : 498- 504: yaagq LkHgpy-A liden PUR1_BACSU : 466- 472: yqdtv LpHvke-A vltk PUR1_CHICK : 113- 118: fvvet L-Hgki-A vahng PUR1_ECOLI : 23- 30: daltv LqHrgqdA agiit PUR1_HAEIN : 23- 30: aaltl LqHrgqdA agivt PUR1_HUMAN : 113- 118: fvvet L-Hgki-A vahng PUR1_RAT : 113- 118: fvvet L-Hgki-A vahng PUR1_SCHPO : 27- 34: eglys LqHrgqdA agivt PUR1_YEAST : 27- 34: dgcif LqHrgqdA agiat E 5: 11.5102 51( 23) L-x(2,3)-G-x(0,1)-L Occurences: 51(23) ASN1_ASPOF : 230- 235: vpfgv LlsgG-L dsslv ASN1_ASPOF : 230- 235: vpfgv Lls-GgL dsslv ASN1_ASPOF : 231- 235: pfgvl Lsg-G-L dsslv ASN1_PEA : 231- 236: vpfgv LlsgG-L dsslv ASN1_PEA : 231- 236: vpfgv Lls-GgL dsslv ASN1_PEA : 232- 236: pfgvl Lsg-G-L dsslv ASN2_PEA : 230- 235: vpfgv LlsgG-L dsslv ASN2_PEA : 230- 235: vpfgv Lls-GgL dsslv ASN2_PEA : 231- 235: pfgvl Lsg-G-L dsslv ASNB_ECOLI : 233- 238: vpygv LlsgG-L dssii ASNB_ECOLI : 233- 238: vpygv Lls-GgL dssii ASNB_ECOLI : 234- 238: pygvl Lsg-G-L dssii ASNS_CRIGR : 255- 260: rrigc LlsgG-L dsslv ASNS_CRIGR : 255- 260: rrigc Lls-GgL dsslv ASNS_CRIGR : 256- 260: rigcl Lsg-G-L dsslv ASNS_HUMAN : 255- 260: rrigc LlsgG-L dsslv ASNS_HUMAN : 255- 260: rrigc Lls-GgL dsslv ASNS_HUMAN : 256- 260: rigcl Lsg-G-L dsslv ASNS_MESAU : 255- 260: rrivc LlsgG-L dsslv ASNS_MESAU : 255- 260: rrivc Lls-GgL dsslv ASNS_MESAU : 256- 260: rivcl Lsg-G-L dsslv GFA1_SCHPO : 22- 26: yilkt Lvk-G-L krley GFA1_SCHPO : 365- 371: nfvnr LvtlGgL esyyd GFA1_SCHPO : 452- 457: alqyt Len-GaL aigvv GFA1_SCHPO : 591- 596: vlage Lkh-GvL alvdn GFA1_YEAST : 22- 26: eiidt Lvd-G-L qrley GFA1_YEAST : 467- 472: alnyc Ler-GaL tvgiv GFA1_YEAST : 606- 611: vlage Lkh-GvL alvde GFAT_HUMAN : 22- 26: eilet Lik-G-L qrley GFAT_HUMAN : 574- 579: ilage Lkh-GpL alvdk GLMS_BACSU : 16- 20: dakei Llk-G-L ekley GLMS_BACSU : 177- 181: knksp Llv-G-L gdtfn GLMS_ECOLI : 16- 20: dvaei Lle-G-L rrley GLMS_ECOLI : 135- 141: lvnwe LkqgGtL reavl GLMS_ECOLI : 178- 182: rsgsp Lvi-G-L gmgen GLMS_ECOLI : 365- 371: rlske LgylGsL aicnv GLMS_ECOLI : 502- 507: yaage Lkh-GpL alida GLMS_HAEIN : 16- 20: dvaei Lin-G-L hrley GLMS_HAEIN : 178- 182: rsgsp Lvi-G-L gigen GLMS_HAEIN : 503- 508: yaage Lkh-GpL alida NODM_RHILV : 476- 482: gtsfp LameGaL klkev NODM_RHIME : 474- 480: gtsfp LameGaL klkei PUR1_BACSU : 110- 116: ngsla LahnGnL vnatq PUR1_BACSU : 183- 188: emiva LdpnG-L rplsi PUR1_BACSU : 427- 432: dtlsf LsveG-L lkgig PUR1_BACSU : 427- 433: dtlsf LsveGlL kgigr PUR1_CHICK : 35- 40: phvit LglvG-L qhrgq PUR1_CHICK : 206- 211: ygnrp Lci-GrL ipvgd PUR1_CHICK : 460- 465: dsvvy LsveG-L vssvq PUR1_ECOLI : 98- 104: pygit LahnGnL tnahe PUR1_HAEIN : 98- 104: pygvt LvhnGnL tnsve PUR1_HUMAN : 35- 40: phvit LglvG-L qhrgq PUR1_HUMAN : 206- 211: ygnrp Lci-GrL ipvsd PUR1_HUMAN : 460- 465: nsvvy LsveG-L vssvq PUR1_RAT : 35- 40: phvit LglvG-L qhrgq PUR1_RAT : 206- 211: ygnrp Lci-GrL mpvsd PUR1_RAT : 460- 465: nsvvy LsveG-L vssvq PUR1_SCHPO : 102- 108: pyglv LghnGnL ingpe PUR1_YEAST : 101- 107: pygin LahnGnL vntas F 6: 11.5102 43( 23) L-x(2,3)-S-x(0,1)-V Occurences: 43(23) ASN1_ASPOF : 150- 154: yigwg Ldg-S-V wlsse ASN1_ASPOF : 235- 240: llsgg Lds-SlV aavta ASN1_PEA : 150- 154: yigwg Ldg-S-V wiase ASN1_PEA : 236- 241: llsgg Lds-SlV asvta ASN1_PEA : 240- 244: gldss Lva-S-V taryl ASN2_PEA : 150- 154: yigwg Ldg-S-V wisse ASN2_PEA : 235- 240: llsgg Lds-SlV asits ASNB_ECOLI : 216- 220: elrqa Led-S-V kshlm ASNB_ECOLI : 441- 445: cfeay Lpa-S-V awrqk ASNS_CRIGR : 214- 218: eplha Lyd-S-V eklfq ASNS_CRIGR : 237- 242: snlri Lfd-SaV rkrlm ASNS_CRIGR : 260- 265: llsgg Lds-SlV aasll ASNS_HUMAN : 260- 265: llsgg Lds-SlV aatll ASNS_MESAU : 214- 218: eplha Lyd-S-V eklfp ASNS_MESAU : 260- 265: llsgg Lds-SlV assll GFA1_SCHPO : 507- 512: lmaly LsrdS-V srler GFA1_SCHPO : 688- 692: dqprn Lak-S-V tve GFA1_YEAST : 709- 713: dfprn Lak-S-V tve GFAT_HUMAN : 186- 191: egafa LvfkS-V hfpgq GFAT_HUMAN : 673- 677: dfprn Lak-S-V tve GLMS_BACSU : 592- 596: dkprn Lak-S-V tve GLMS_ECOLI : 601- 605: dqprn Lak-S-V tve GLMS_HAEIN : 194- 199: lasdq LallS-V trrfi GLMS_HAEIN : 602- 606: dqprn Lak-S-V tve NODM_RHILV : 600- 604: dqprn Lak-S-V tve NODM_RHIME : 597- 601: dqprn Lak-S-V tve PUR1_BACSU : 277- 283: nlgkm LaqeSaV eadvv PUR1_BACSU : 424- 429: igadt LsflS-V egllk PUR1_CHICK : 465- 469: lsveg Lvs-S-V qesik PUR1_ECOLI : 341- 346: mpgqq LrrkS-V rrkln PUR1_ECOLI : 364- 370: dknvl LvddSiV rgtts PUR1_HAEIN : 104- 108: vhngn Ltn-S-V elkek PUR1_HAEIN : 365- 371: dknvl LvddSiV rgtts PUR1_HAEIN : 443- 447: qdlta Lte-S-V qlenp PUR1_HUMAN : 387- 393: gkriv LvddSiV rgnti PUR1_HUMAN : 452- 457: hlaey LganS-V vylsv PUR1_HUMAN : 452- 458: hlaey LganSvV ylsve PUR1_HUMAN : 465- 469: lsveg Lvs-S-V qegik PUR1_RAT : 387- 393: gkriv LiddSiV rgnti PUR1_RAT : 452- 457: ylaey LganS-V vylsv PUR1_RAT : 452- 458: ylaey LganSvV ylsve PUR1_RAT : 465- 469: lsveg Lvs-S-V qqeik PUR1_SCHPO : 209- 214: gkdym LaseS-V vltqf PUR1_SCHPO : 209- 215: gkdym LaseSvV ltqfg PUR1_YEAST : 210- 215: tkdym LaseS-V vfkah PUR1_YEAST : 210- 216: tkdym LaseSvV fkahn PUR1_YEAST : 273- 278: rpdsv LdgiS-V yhtrl G 7: 11.5102 55( 23) L-x(0,1)-A-x(3,4)-V Occurences: 55(23) ASN1_ASPOF : 274- 280: egspd LkAake-V aeylg ASN1_PEA : 275- 281: kgapd LkAgke-V adflg ASN2_PEA : 274- 280: egspd LkAgke-V adylg ASNB_ECOLI : 281- 287: pgspd LkAaqe-V anhlg ASNB_ECOLI : 306- 312: tvqeg LdAird-V iyhie ASNS_CRIGR : 211- 218: crdep LhAlydsV eklfq ASNS_CRIGR : 295- 301: edspd LlAark-V anyig ASNS_CRIGR : 296- 301: dspdl L-Aark-V anyig ASNS_HUMAN : 211- 218: crdvp LhAlydnV eklfp ASNS_HUMAN : 295- 301: edspd LlAark-V adhig ASNS_HUMAN : 296- 301: dspdl L-Aark-V adhig ASNS_MESAU : 211- 218: crdep LhAlydsV eklfp ASNS_MESAU : 295- 301: edspd LlAark-V anyig ASNS_MESAU : 296- 301: dspdl L-Aark-V anyig GFA1_SCHPO : 415- 420: pvvve L-Asdf-V drcps GFA1_SCHPO : 457- 462: lenga L-Aigv-V ncvgs GFA1_SCHPO : 688- 694: dqprn L-AksvtV e GFA1_YEAST : 386- 392: vilgg LkAwlp-V vrrar GFA1_YEAST : 386- 393: vilgg LkAwlpvV rrarr GFA1_YEAST : 709- 715: dfprn L-AksvtV e GFAT_HUMAN : 654- 661: viplq LlAfhlaV lrgyd GFAT_HUMAN : 655- 661: iplql L-AfhlaV lrgyd GFAT_HUMAN : 673- 679: dfprn L-AksvtV e GLMS_BACSU : 408- 414: aqiav L-AvlasV aadkn GLMS_BACSU : 514- 520: tpvfa L-AtqehV nlsir GLMS_BACSU : 562- 568: evnpa L-AplvsV vplql GLMS_BACSU : 592- 598: dkprn L-AksvtV e GLMS_ECOLI : 194- 199: iasdq L-Allp-V trrfi GLMS_ECOLI : 371- 376: gylgs L-Aicn-V pgssl GLMS_ECOLI : 601- 607: dqprn L-AksvtV e GLMS_HAEIN : 142- 149: ttdsl LdAvkkaV kqltg GLMS_HAEIN : 194- 199: lasdq L-Alls-V trrfi GLMS_HAEIN : 409- 416: afttq LaAllmlV talgk GLMS_HAEIN : 602- 608: dqprn L-AksvtV e NODM_RHILV : 236- 242: prhis L-AtadlV gkgnh NODM_RHILV : 434- 440: vlvqs L-AtlpgV mrqvl NODM_RHILV : 581- 588: slplq LlAyhtaV vmgad NODM_RHILV : 582- 588: lplql L-AyhtaV vmgad NODM_RHILV : 600- 606: dqprn L-AksvtV e NODM_RHIME : 578- 585: slplq LlAyhtaV fmgtd NODM_RHIME : 579- 585: lplql L-AyhtaV fmgtd NODM_RHIME : 597- 603: dqprn L-AksvtV e PUR1_BACSU : 277- 283: nlgkm L-AqesaV eadvv PUR1_BACSU : 340- 346: gvrmk LsAvrg-V vegkr PUR1_BACSU : 340- 347: gvrmk LsAvrgvV egkrv PUR1_BACSU : 405- 412: sthee LiAsshsV geirq PUR1_CHICK : 310- 316: rcgqq L-AieapV eadlv PUR1_ECOLI : 415- 422: psate LiAhgreV deirq PUR1_HAEIN : 416- 423: psrde LiAygrnV deiae PUR1_HAEIN : 440- 447: lifqd LtAltesV qlenp PUR1_HUMAN : 310- 316: rcgqq L-AieapV dadlv PUR1_HUMAN : 452- 458: hlaey LgAnsv-V ylsve PUR1_RAT : 310- 316: rcgqq L-AveapV eadlv PUR1_RAT : 452- 458: ylaey LgAnsv-V ylsve PUR1_SCHPO : 209- 214: gkdym L-Ases-V vltqf PUR1_SCHPO : 209- 215: gkdym L-AsesvV ltqfg PUR1_YEAST : 86- 93: glrli LeAqpfyV nspyg PUR1_YEAST : 210- 215: tkdym L-Ases-V vfkah PUR1_YEAST : 210- 216: tkdym L-AsesvV fkahn H 8: 11.5102 48( 23) L-x(0,2)-A-x(4)-V Occurences: 48(23) ASN1_ASPOF : 209- 217: ydplv LrkAfedaV ikrlm ASN1_PEA : 210- 218: ydplv LrnAfekaV ikrlm ASN2_PEA : 209- 217: ydpla LrhAfekaV vkrlm ASNB_ECOLI : 212- 220: tdkne LrqAledsV kshlm ASNS_CRIGR : 211- 218: crdep Lh-AlydsV eklfq ASNS_HUMAN : 211- 218: crdvp Lh-AlydnV eklfp ASNS_MESAU : 211- 218: crdep Lh-AlydsV eklfp GFA1_SCHPO : 688- 694: dqprn L--AksvtV e GFA1_YEAST : 386- 393: vilgg Lk-AwlpvV rrarr GFA1_YEAST : 709- 715: dfprn L--AksvtV e GFAT_HUMAN : 654- 661: viplq Ll-AfhlaV lrgyd GFAT_HUMAN : 655- 661: iplql L--AfhlaV lrgyd GFAT_HUMAN : 673- 679: dfprn L--AksvtV e GLMS_BACSU : 408- 414: aqiav L--AvlasV aadkn GLMS_BACSU : 514- 520: tpvfa L--AtqehV nlsir GLMS_BACSU : 546- 554: islkg LddAddrfV lpevn GLMS_BACSU : 562- 568: evnpa L--AplvsV vplql GLMS_BACSU : 592- 598: dkprn L--AksvtV e GLMS_ECOLI : 601- 607: dqprn L--AksvtV e GLMS_HAEIN : 141- 149: rttds LldAvkkaV kqltg GLMS_HAEIN : 142- 149: ttdsl Ld-AvkkaV kqltg GLMS_HAEIN : 152- 160: kavkq LtgAygmvV mdsrh GLMS_HAEIN : 409- 416: afttq La-AllmlV talgk GLMS_HAEIN : 602- 608: dqprn L--AksvtV e NODM_RHILV : 236- 242: prhis L--AtadlV gkgnh NODM_RHILV : 434- 440: vlvqs L--AtlpgV mrqvl NODM_RHILV : 581- 588: slplq Ll-AyhtaV vmgad NODM_RHILV : 582- 588: lplql L--AyhtaV vmgad NODM_RHILV : 600- 606: dqprn L--AksvtV e NODM_RHIME : 578- 585: slplq Ll-AyhtaV fmgtd NODM_RHIME : 579- 585: lplql L--AyhtaV fmgtd NODM_RHIME : 597- 603: dqprn L--AksvtV e PUR1_BACSU : 277- 283: nlgkm L--AqesaV eadvv PUR1_BACSU : 340- 347: gvrmk Ls-AvrgvV egkrv PUR1_BACSU : 372- 380: rivtm LreAgateV hvkis PUR1_BACSU : 405- 412: sthee Li-AsshsV geirq PUR1_CHICK : 310- 316: rcgqq L--AieapV eadlv PUR1_CHICK : 367- 375: mrlrq LgvAkkfgV lsdnf PUR1_ECOLI : 415- 422: psate Li-AhgreV deirq PUR1_HAEIN : 416- 423: psrde Li-AygrnV deiae PUR1_HAEIN : 440- 447: lifqd Lt-AltesV qlenp PUR1_HUMAN : 310- 316: rcgqq L--AieapV dadlv PUR1_HUMAN : 367- 375: mrlrq LgvAkkfgV lsdnf PUR1_RAT : 310- 316: rcgqq L--AveapV eadlv PUR1_RAT : 367- 375: mrlrq LgvAkkfgV lsdnf PUR1_SCHPO : 209- 215: gkdym L--AsesvV ltqfg PUR1_YEAST : 86- 93: glrli Le-AqpfyV nspyg PUR1_YEAST : 210- 216: tkdym L--AsesvV fkahn I 9: 11.5102 39( 23) A-x(1,2)-E-x(1,2)-V Occurences: 39(23) ASN1_ASPOF : 212- 217: lvlrk Af-EdaV ikrlm ASN1_ASPOF : 301- 305: qdgid Ai-Ed-V ifhie ASN1_PEA : 213- 218: lvlrn Af-EkaV ikrlm ASN1_PEA : 302- 306: qdgid Ai-Ed-V iyhte ASN2_PEA : 212- 217: lalrh Af-EkaV vkrlm ASN2_PEA : 301- 305: qdgid Ai-Ed-V iyhve ASNB_ECOLI : 215- 220: nelrq Al-EdsV kshlm ASNB_ECOLI : 511- 515: fplps Aa-Ec-V pggps ASNS_CRIGR : 196- 201: pngkv AsvEm-V kyhhc ASNS_HUMAN : 196- 201: pngkv AsvEm-V kyhhc ASNS_MESAU : 196- 201: pngkv AsvEm-V kyhhc GFA1_SCHPO : 481- 487: gvhin AgpEicV astka GFA1_SCHPO : 621- 625: pkawn Af-Eq-V rargg GFA1_YEAST : 496- 502: gvhin AgpEigV astka GFAT_HUMAN : 67- 72: kgkvk AldEe-V hkqqd GFAT_HUMAN : 465- 471: gvhin AgpEigV astka GLMS_BACSU : 389- 395: tlllh AgpEiaV astka GLMS_BACSU : 515- 520: pvfal AtqEh-V nlsir GLMS_ECOLI : 393- 399: almtn AgtEigV astka GLMS_HAEIN : 53- 58: lgkvk AldEa-V sekpl GLMS_HAEIN : 393- 399: afmtr AgvEvgV astka NODM_RHILV : 389- 395: ifpil AgpEigV astka NODM_RHIME : 387- 393: vfpil AgpEigV artka PUR1_BACSU : 278- 283: lgkml Aq-EsaV eadvv PUR1_BACSU : 282- 287: laqes Av-EadV vtgvp PUR1_BACSU : 330- 336: iqpsq AlrEqgV rmkls PUR1_BACSU : 377- 382: lreag At-EvhV kissp PUR1_CHICK : 311- 316: cgqql Ai-EapV eadlv PUR1_ECOLI : 207- 211: teymv As-Es-V aldtl PUR1_HAEIN : 206- 210: tdymf As-Et-V aldiv PUR1_HAEIN : 224- 229: fvrdi AagEa-V yvtfd PUR1_HAEIN : 225- 229: vrdia Ag-Ea-V yvtfd PUR1_HAEIN : 442- 447: fqdlt AltEs-V qlenp PUR1_HUMAN : 311- 316: cgqql Ai-EapV dadlv PUR1_RAT : 311- 316: cgqql Av-EapV eadlv PUR1_SCHPO : 210- 214: kdyml As-Es-V vltqf PUR1_SCHPO : 210- 215: kdyml As-EsvV ltqfg PUR1_SCHPO : 484- 490: eyttg AskEylV hleqm PUR1_YEAST : 159- 163: dgfsn Al-Eg-V yrlcr PUR1_YEAST : 211- 215: kdyml As-Es-V vfkah PUR1_YEAST : 211- 216: kdyml As-EsvV fkahn J 10: 11.5102 62( 23) A-x(3,4)-A-x(2,3)-G Occurences: 62(23) ASN1_ASPOF : 249- 258: tarhl AgskaAeqwG tqlhs ASN1_ASPOF : 276- 285: spdlk AakevAeylG tvhhe ASN1_ASPOF : 277- 285: pdlka Akev-AeylG tvhhe ASN1_PEA : 250- 259: taryl AgtkaAkqwG aklps ASN1_PEA : 277- 286: apdlk AgkevAdflG tvhhe ASN2_PEA : 249- 258: tsryl AttkaAeqwG sklhs ASN2_PEA : 276- 285: spdlk AgkevAdylG tvhhe ASN2_PEA : 574- 582: iplea ApvelAiq-G ASNB_ECOLI : 283- 292: spdlk AaqevAnhlG tvhhe ASNB_ECOLI : 284- 292: pdlka Aqev-AnhlG tvhhe ASNS_CRIGR : 20- 27: vqcls Amki-Ahr-G pdafr ASNS_CRIGR : 297- 306: spdll AarkvAnyiG sehhe ASNS_CRIGR : 298- 306: pdlla Arkv-AnyiG sehhe ASNS_CRIGR : 404- 412: fdvlr AdrttAah-G lelrv ASNS_HUMAN : 20- 27: vqcls Amki-Ahr-G pdafr ASNS_HUMAN : 297- 306: spdll AarkvAdhiG sehye ASNS_HUMAN : 298- 306: pdlla Arkv-AdhiG sehye ASNS_HUMAN : 404- 412: fdvlr AdrttAah-G lelrv ASNS_MESAU : 20- 27: vqcls Amki-Ahr-G pdafr ASNS_MESAU : 297- 306: spdll AarkvAnyiG sehhe ASNS_MESAU : 298- 306: pdlla Arkv-AnyiG sehhe ASNS_MESAU : 404- 412: fdvlr AdrttAah-G lelrv GFA1_SCHPO : 255- 263: dllhr Aqsr-AfvsG egvpg GFA1_YEAST : 83- 91: shcgi AhtrwAth-G rpeqv GFAT_HUMAN : 91- 99: vhlgi AhtrwAth-G epspv GFAT_HUMAN : 656- 664: plqll Afhl-AvlrG ydvdf GLMS_BACSU : 31- 40: rgyds AgiavAneqG ihvfk GLMS_BACSU : 59- 66: revvd Anve-Aka-G ightr GLMS_BACSU : 412- 420: vlavl Asva-AdknG inigf GLMS_BACSU : 575- 583: plqli Ayya-AlhrG cdvdk GLMS_ECOLI : 70- 78: ggtgi AhtrwAth-G epsev GLMS_ECOLI : 584- 592: plqll Ayhv-AlikG tdvdq GLMS_HAEIN : 70- 78: ggtgi AhtrwAth-G epset GLMS_HAEIN : 357- 366: tadtl AalrlAkekG ymaal GLMS_HAEIN : 358- 366: adtla Alrl-AkekG ymaal GLMS_HAEIN : 463- 472: laedf AekhhAlflG rgafy NODM_RHILV : 69- 77: gtvgi AhtrwAth-G aptec NODM_RHILV : 166- 174: feddp AtimvArn-G pplvi NODM_RHILV : 296- 304: slais Acgt-AylaG ligky NODM_RHILV : 406- 414: ftcql Avla-AlriG agkar NODM_RHILV : 583- 591: plqll Ayht-AvvmG advdq NODM_RHIME : 69- 77: gtigi AhtrwAth-G apter NODM_RHIME : 404- 412: ftcql Avla-AlraG agkar NODM_RHIME : 407- 414: qlavl Aalr-Aga-G kargt NODM_RHIME : 433- 440: liksl Aemp-Aim-G qvlns NODM_RHIME : 580- 588: plqll Ayht-AvfmG tdvdq PUR1_BACSU : 42- 49: rgqeg Agiv-Atd-G eklta PUR1_BACSU : 298- 307: dssis AaigyAeatG ipyel PUR1_BACSU : 299- 307: ssisa Aigy-AeatG ipyel PUR1_CHICK : 331- 340: esatp AalgyAqkcG lpyve PUR1_CHICK : 332- 340: satpa Algy-AqkcG lpyve PUR1_ECOLI : 166- 175: rlirg AyacvAmiiG hgmva PUR1_ECOLI : 309- 317: tscdi Alei-ArilG kpyrq PUR1_HAEIN : 166- 175: kdvrg AyaclAmiiG hgmva PUR1_HAEIN : 310- 318: tstdi Alqi-ArvlG kpyrq PUR1_HUMAN : 331- 340: esatp AalayAgkcG lpyve PUR1_HUMAN : 332- 340: satpa Alay-AgkcG lpyve PUR1_RAT : 331- 340: esatp AalgyAtkcG lpyve PUR1_RAT : 332- 340: satpa Algy-AtkcG lpyve PUR1_SCHPO : 35- 44: rgqda AgivtAgnkG rlyqc PUR1_YEAST : 34- 41: hrgqd Aagi-Atc-G srgrv PUR1_YEAST : 316- 324: tartc Alec-AnvlG kpyre K 11: 11.5102 44( 23) V-x(0,1)-A-x(3,4)-G Occurences: 44(23) ASN1_ASPOF : 133- 140: rnncf VaArdavG itply ASN1_ASPOF : 243- 250: slvaa VtArhlaG skaae ASN1_ASPOF : 280- 285: kaake V-Aeyl-G tvhhe ASN1_PEA : 134- 140: dnsfi V-ArdaiG vtsly ASN1_PEA : 244- 251: slvas VtArylaG tkaak ASN1_PEA : 281- 286: kagke V-Adfl-G tvhhe ASN2_PEA : 134- 140: dnsyi V-ArdaiG vtsly ASN2_PEA : 280- 285: kagke V-Adyl-G tvhhe ASNB_ECOLI : 287- 292: kaaqe V-Anhl-G tvhhe ASNS_CRIGR : 301- 306: laark V-Anyi-G sehhe ASNS_HUMAN : 301- 306: laark V-Adhi-G sehye ASNS_MESAU : 301- 306: laark V-Anyi-G sehhe GFA1_SCHPO : 187- 193: hypge VvAtrr-G spliv GFA1_SCHPO : 188- 193: ypgev V-Atrr-G spliv GFA1_YEAST : 191- 197: hypne ViAtrk-G splli GFAT_HUMAN : 280- 286: leddd VaAvvd-G rlsih GFAT_HUMAN : 280- 286: leddd V-AavvdG rlsih GLMS_BACSU : 35- 40: sagia V-Aneq-G ihvfk GLMS_BACSU : 61- 68: vvdan VeAkagiG htrwa GLMS_BACSU : 414- 420: avlas VaAdkn-G inigf GLMS_BACSU : 414- 420: avlas V-AadknG inigf GLMS_ECOLI : 545- 552: ggqly VfAdqdaG fvssd GLMS_ECOLI : 587- 592: llayh V-Alik-G tdvdq GLMS_HAEIN : 170- 175: hpehl V-Aars-G splvi GLMS_HAEIN : 546- 553: ggqly VfAdkeaG ftpse GLMS_HAEIN : 588- 593: llsyy V-Alik-G tdvdq NODM_RHILV : 33- 39: ydssg V-AtifeG elhrr NODM_RHILV : 92- 98: hftdg V-AvvhnG iienf NODM_RHILV : 261- 267: yeqpe ViAral-G hyinv NODM_RHILV : 407- 414: tcqla VlAalriG agkar NODM_RHILV : 534- 539: snmqe V-Aarg-G riili NODM_RHIME : 33- 39: ydsag V-AtmdaG tlqrr NODM_RHIME : 92- 98: hfteg V-AvvhnG iienf NODM_RHIME : 260- 266: yeqpe ViAial-G hyvnv NODM_RHIME : 405- 412: tcqla VlAalraG agkar PUR1_BACSU : 181- 187: etemi V-AldpnG lrpls PUR1_BACSU : 283- 290: aqesa VeAdvvtG vpdss PUR1_CHICK : 369- 374: lrqlg V-Akkf-G vlsdn PUR1_ECOLI : 170- 175: gayac V-Amii-G hgmva PUR1_ECOLI : 211- 217: vases V-AldtlG fdflr PUR1_HAEIN : 210- 216: faset V-AldivG fefvr PUR1_HUMAN : 369- 374: lrqlg V-Akkf-G vlsdn PUR1_RAT : 369- 374: lrqlg V-Akkf-G vlsdn PUR1_SCHPO : 38- 44: daagi VtAgnk-G rlyqc PUR1_SCHPO : 174- 179: ggyac V-Amia-G lgvlg PUR1_YEAST : 432- 437: rtdee V-Aevi-G cervi L 12: 11.5102 34( 23) G-I-x(0,2)-V Occurences: 34(23) ASN1_ASPOF : 2- 6: c GIlaV lgcsd ASN1_PEA : 2- 6: c GIlaV lgcsd ASN2_PEA : 2- 6: c GIlaV lgcsd ASNB_ECOLI : 341- 345: kikam GIkmV lsgeg ASNS_CRIGR : 472- 476: eafsd GItsV knswf ASNS_HUMAN : 472- 476: eafsd GItsV knswf ASNS_MESAU : 472- 476: eafsd GItsV knswf GFA1_SCHPO : 660- 664: vdclq GIlnV ipfql GFA1_YEAST : 475- 477: galtv GI--V nsvgs GFA1_YEAST : 700- 703: lavnk GId-V dfprn GFAT_HUMAN : 645- 649: vdclq GIlsV iplql GLMS_BACSU : 2- 4: c GI--V gyigq GLMS_BACSU : 32- 35: gydsa GIa-V aneqg GLMS_BACSU : 40- 43: vaneq GIh-V fkekg GLMS_ECOLI : 2- 4: c GI--V gaiaq GLMS_HAEIN : 2- 4: c GI--V gavaq NODM_RHILV : 2- 4: c GI--V givgh NODM_RHILV : 5- 7: cgiv GI--V ghkpv NODM_RHIME : 2- 4: c GI--V givgh NODM_RHIME : 5- 7: cgiv GI--V ghqpv PUR1_BACSU : 43- 45: gqega GI--V atdge PUR1_BACSU : 263- 266: dsnid GIn-V hsark PUR1_CHICK : 49- 51: gqesa GI--V tsdge PUR1_ECOLI : 2- 4: c GI--V giagv PUR1_ECOLI : 5- 9: cgiv GIagV mpvnq PUR1_ECOLI : 68- 72: lqgnm GIghV rypta PUR1_HAEIN : 2- 4: c GI--V givsq PUR1_HAEIN : 5- 7: cgiv GI--V sqspv PUR1_HAEIN : 32- 34: gqdaa GI--V tvdde PUR1_HAEIN : 32- 36: gqdaa GIvtV ddenr PUR1_HUMAN : 49- 51: gqesa GI--V tsdgs PUR1_RAT : 49- 51: gqesa GI--V tsdgs PUR1_SCHPO : 36- 38: gqdaa GI--V tagnk PUR1_YEAST : 6- 8: mcgil GI--V lanqt PUR1_YEAST : 275- 278: dsvld GIs-V yhtrl M 13: 11.5102 23( 23) E-x(0,1)-Y-x(1,2)-Y Occurences: 23(23) ASN1_ASPOF : 493- 497: tpttk EaYy-Y rmife ASN1_PEA : 494- 498: tpntk EaYy-Y rmife ASN2_PEA : 493- 497: tpntk EaYy-Y rmife ASNB_ECOLI : 494- 498: tptsk EaYl-Y reife ASNS_CRIGR : 513- 517: tpktk EgYy-Y rqife ASNS_HUMAN : 513- 517: tpktk EgYy-Y rqvfe ASNS_MESAU : 513- 517: tpktk EgYf-Y rqife GFA1_SCHPO : 30- 34: glkrl E-YrgY dssgc GFA1_YEAST : 30- 34: glqrl E-YrgY dstgi GFAT_HUMAN : 30- 34: glqrl E-YrgY dsagv GLMS_BACSU : 24- 28: glekl E-YrgY dsagi GLMS_ECOLI : 24- 28: glrrl E-YrgY dsagl GLMS_HAEIN : 24- 28: glhrl E-YrgY dsagv NODM_RHILV : 24- 28: algrl E-YrgY dssgv NODM_RHIME : 24- 28: alepl E-YrgY dsagv PUR1_BACSU : 250- 253: sicsm E-Yi-Y fsrpd PUR1_CHICK : 283- 286: afcif E-Yv-Y farpd PUR1_ECOLI : 255- 258: npclf E-Yv-Y farpd PUR1_HAEIN : 254- 257: npcif E-Yv-Y farpd PUR1_HUMAN : 283- 286: afcif E-Yv-Y farpd PUR1_RAT : 283- 286: afcif E-Yv-Y farpd PUR1_SCHPO : 269- 272: tpdif E-Yv-Y farpd PUR1_YEAST : 262- 265: rpdlf E-Yv-Y farpd N 14: 11.5102 41( 23) G-x(2,3)-L-x(0,1)-I Occurences: 41(23) ASN1_ASPOF : 140- 146: ardav GitpLyI gwgld ASN1_PEA : 140- 146: ardai GvtsLyI gwgld ASN2_PEA : 140- 146: ardai GvtsLyI gwgld ASNB_ECOLI : 137- 143: dayli GrdhLgI iplym ASNS_CRIGR : 343- 347: vrasv Gmy-L-I skyir ASNS_HUMAN : 343- 347: vrasv Gmy-L-I skyir ASNS_MESAU : 343- 347: vrasv Gmy-L-I skyir GFA1_SCHPO : 172- 178: frele GayaLlI ksshy GFA1_SCHPO : 193- 197: vatrr Gsp-L-I vgvks GFA1_YEAST : 197- 202: iatrk GsplL-I gvkse GFA1_YEAST : 197- 202: iatrk Gsp-LlI gvkse GFA1_YEAST : 539- 543: ieiiq Glk-L-I pgqik GFAT_HUMAN : 203- 208: vgtrr GsplL-I gvrse GFAT_HUMAN : 203- 208: vgtrr Gsp-LlI gvrse GLMS_BACSU : 363- 369: qvkal GhkaLtI tnvpg GLMS_BACSU : 500- 505: gelkh GtiaL-I eqgtp GLMS_ECOLI : 175- 180: laars Gsp-LvI glgmg GLMS_ECOLI : 505- 510: gelkh GplaL-I dadmp GLMS_HAEIN : 175- 180: vaars Gsp-LvI glgig GLMS_HAEIN : 506- 511: gelkh GplaL-I dadmp NODM_RHILV : 153- 159: lkcve GafaLaI lfedd NODM_RHILV : 174- 179: mvarn Gpp-LvI ghgdg NODM_RHILV : 288- 294: didfa GvesLaI sacgt NODM_RHILV : 503- 508: gelkh GpiaL-I denmp NODM_RHILV : 539- 544: vaarg GriiL-I tdetg NODM_RHIME : 287- 293: aidfa GvesLaI sccgt NODM_RHIME : 501- 506: gqlkh GpyaL-I denmp NODM_RHIME : 536- 541: evarg GriiL-I tdekg PUR1_BACSU : 57- 61: ltahk Gqg-L-I tevfq PUR1_BACSU : 187- 193: aldpn GlrpLsI gmmgd PUR1_BACSU : 223- 227: revep Gem-L-I indeg PUR1_BACSU : 223- 228: revep Gem-LiI ndegm PUR1_CHICK : 66- 70: fkvhk Gmg-L-I nhvfn PUR1_CHICK : 202- 208: vrdpy GnrpLcI grlip PUR1_CHICK : 307- 312: vrrrc Gqq-LaI eapve PUR1_ECOLI : 430- 435: irqii GadgL-I fqdln PUR1_HAEIN : 431- 436: iaeli GvdkL-I fqdlt PUR1_HUMAN : 202- 208: vrdpy GnrpLcI grlip PUR1_HUMAN : 307- 312: vryrc Gqq-LaI eapvd PUR1_RAT : 202- 208: vrdpy GnrpLcI grlmp PUR1_RAT : 262- 268: eisrh GvrtLdI iprsn PUR1_SCHPO : 190- 196: frdpn GirpLvI gerdt PUR1_YEAST : 81- 85: ryptp Glr-L-I leaqp PUR1_YEAST : 366- 371: esefk GkkvL-I vddsi O 15: 11.5102 37( 23) G-x(2,3)-L-x(4,5)-P Occurences: 37(23) ASN1_ASPOF : 349- 358: sdeif Ggy-LyfhkaP nkeef ASN1_PEA : 350- 359: sdeif Ggy-LyfhkaP nreef ASN2_PEA : 58- 68: vdpas GdqpLfnednP sivtv ASN2_PEA : 349- 358: sdeif Ggy-LyfhkaP nkeef ASNB_ECOLI : 356- 365: sdevf Ggy-LyfhkaP nakel ASNS_CRIGR : 45- 54: tnccf GfhrLavvd-P lfgmq ASNS_CRIGR : 162- 172: cseak GlvsLkhsttP flkve ASNS_HUMAN : 45- 54: tnccf GfhrLavvd-P lfgmq ASNS_HUMAN : 162- 172: cseak GlvtLkhsatP flkve ASNS_MESAU : 45- 54: tnccf GfhrLavvd-P lfgmq ASNS_MESAU : 162- 172: cseak GlvsLkhsttP flkve GFA1_SCHPO : 594- 604: gelkh GvlaLvdndmP ivmll GFA1_YEAST : 609- 619: gelkh GvlaLvdenlP iiafg GFAT_HUMAN : 577- 587: gelkh GplaLvdklmP vimii GLMS_BACSU : 363- 373: qvkal GhkaLtitnvP gstls GLMS_BACSU : 500- 510: gelkh GtiaLieqgtP vfala GLMS_ECOLI : 274- 283: grish GqvdLselg-P nadel GLMS_ECOLI : 505- 515: gelkh GplaLidadmP vivva GLMS_HAEIN : 506- 516: gelkh GplaLidadmP vivva NODM_RHILV : 503- 513: gelkh GpiaLidenmP vivia NODM_RHIME : 440- 448: mpaim Gqv-Lnsiq-P eievl NODM_RHIME : 501- 511: gqlkh GpyaLidenmP vivia PUR1_BACSU : 213- 222: afdvv GatyLreve-P gemli PUR1_CHICK : 98- 107: rysts GiseLqncq-P fvvet PUR1_CHICK : 307- 315: vrrrc Gqq-Laiea-P veadl PUR1_ECOLI : 217- 226: aldtl GfdfLrdva-P geaiy PUR1_HAEIN : 65- 75: mlrlq GnagLghvryP tagss PUR1_HUMAN : 98- 107: ryatt GkceLencq-P fvvet PUR1_HUMAN : 307- 315: vryrc Gqq-Laiea-P vdadl PUR1_RAT : 98- 107: ryatt GkceLencq-P fvvet PUR1_RAT : 307- 315: vryrc Gqq-Lavea-P veadl PUR1_SCHPO : 3- 12: mc GilaLmlad-P hqqac PUR1_SCHPO : 179- 188: vamia GlgvLgfrd-P ngirp PUR1_YEAST : 6- 15: mcgil Giv-LanqttP vapel PUR1_YEAST : 71- 80: lagsm GiahLrypt-P glrli PUR1_YEAST : 81- 90: ryptp Glr-LileaqP fyvns PUR1_YEAST : 179- 188: vglla Gfa-LfgfrdP ngirp P 16: 11.5102 42( 23) G-x(1,2)-A-x(0,1)-V Occurences: 42(23) ASN1_ASPOF : 2- 6: c GilA-V lgcsd ASN1_ASPOF : 390- 395: atsaw GleArV pfldk ASN1_PEA : 2- 6: c GilA-V lgcsd ASN1_PEA : 391- 396: styaw GleArV pfldk ASN2_PEA : 2- 6: c GilA-V lgcsd ASN2_PEA : 390- 395: styaw GleArV pfldk ASNB_ECOLI : 397- 402: amsaw GveArV pfldk ASNB_ECOLI : 543- 546: mddps Gr-A-V gvhqs ASNS_CRIGR : 152- 156: amted GflA-V cseak ASNS_CRIGR : 193- 198: dlkpn GkvAsV emvky ASNS_HUMAN : 118- 123: icmld GvfAfV lldta ASNS_HUMAN : 152- 156: amted GflA-V cseak ASNS_HUMAN : 193- 198: dlkpn GkvAsV emvky ASNS_MESAU : 152- 156: amted GflA-V cseak ASNS_MESAU : 193- 198: dlkpn GkvAsV emvky GFA1_SCHPO : 38- 41: gydss Gc-A-V dgdeg GFA1_SCHPO : 594- 599: gelkh GvlAlV dndmp GFA1_YEAST : 609- 614: gelkh GvlAlV denlp GFAT_HUMAN : 182- 187: iqqle GafAlV fksvh GFAT_HUMAN : 195- 198: svhfp Gq-A-V gtrrg GFAT_HUMAN : 302- 305: agdhp Gr-A-V qtlqm GFAT_HUMAN : 577- 582: gelkh GplAlV dklmp GLMS_BACSU : 32- 35: gydsa Gi-A-V aneqg GLMS_ECOLI : 32- 35: gydsa Gl-A-V vdaeg GLMS_ECOLI : 32- 36: gydsa Gl-AvV daegh GLMS_HAEIN : 32- 35: gydsa Gv-A-V inkqn GLMS_HAEIN : 91- 95: hphss GtfA-V vhngi GLMS_HAEIN : 91- 96: hphss GtfAvV hngii NODM_RHILV : 91- 94: phftd Gv-A-V vhngi NODM_RHILV : 91- 95: phftd Gv-AvV hngii NODM_RHILV : 208- 212: tylnd GdwA-V vgkts NODM_RHILV : 208- 213: tylnd GdwAvV gktsv NODM_RHIME : 91- 94: phfte Gv-A-V vhngi NODM_RHIME : 91- 95: phfte Gv-AvV hngii NODM_RHIME : 207- 211: tylid GdwA-V igktg PUR1_BACSU : 197- 201: sigmm Gd-AyV vaset PUR1_CHICK : 115- 119: vetlh GkiA-V ahnge PUR1_ECOLI : 5- 9: cgiv Gi-AgV mpvnq PUR1_ECOLI : 165- 170: nrlir GayAcV amiig PUR1_HAEIN : 226- 229: rdiaa Ge-A-V yvtfd PUR1_HUMAN : 115- 119: vetlh GkiA-V ahnge PUR1_RAT : 115- 119: vetlh GkiA-V ahnge PUR1_SCHPO : 53- 58: qckgs GmvAdV fsqhq PUR1_SCHPO : 169- 174: ydrvn GgyAcV amiag PUR1_SCHPO : 170- 174: drvng Gy-AcV amiag PUR1_YEAST : 169- 174: yrlcr GgyAcV gllag PUR1_YEAST : 170- 174: rlcrg Gy-AcV gllag Q 17: 11.5102 40( 23) G-x(3,4)-V-x(2,3)-S Occurences: 40(23) ASN1_ASPOF : 2- 10: c Gila-VlgcS ddsqa ASN1_ASPOF : 149- 157: lyigw GldgsVwl-S semkg ASN1_ASPOF : 149- 158: lyigw GldgsVwlsS emkgl ASN1_PEA : 2- 10: c Gila-VlgcS ddsqa ASN1_PEA : 149- 158: lyigw GldgsVwiaS elkgl ASN1_PEA : 517- 524: rltvp Ggps-Vac-S tekai ASN2_PEA : 2- 10: c Gila-VlgcS dpsra ASN2_PEA : 149- 157: lyigw GldgsVwi-S semkg ASN2_PEA : 149- 158: lyigw GldgsVwisS emkgl ASN2_PEA : 516- 523: rltvp Ggpt-Vac-S takav ASNB_ECOLI : 517- 524: aecvp Ggps-Vac-S sakai ASNB_ECOLI : 517- 525: aecvp Ggps-VacsS akaie ASNB_ECOLI : 543- 551: mddps GravgVhq-S ayk ASNS_CRIGR : 472- 479: eafsd Gits-Vkn-S wfkil ASNS_HUMAN : 472- 479: eafsd Gits-Vkn-S wfkil ASNS_MESAU : 472- 479: eafsd Gits-Vkn-S wfkil GFA1_SCHPO : 193- 202: vatrr GspliVgvkS eqklk GFA1_SCHPO : 460- 468: galai GvvncVgs-S isrkt GFA1_SCHPO : 571- 579: atale Galk-VkeiS ythae GFA1_YEAST : 475- 483: galtv GivnsVgs-S isrvt GFAT_HUMAN : 182- 190: iqqle GafalVfk-S vhfpg GFAT_HUMAN : 444- 452: galtv GitntVgs-S isret GLMS_BACSU : 182- 190: llvgl GdtfnVva-S damam GLMS_ECOLI : 154- 163: ipqlr GaygtVimdS rhpdt GLMS_ECOLI : 319- 328: fesla GipcdVeiaS efryr GLMS_ECOLI : 378- 385: icnvp Gssl-Vre-S dlalm GLMS_HAEIN : 154- 163: vkqlt GaygmVvmdS rhpeh GLMS_HAEIN : 319- 328: fesla GvscdVeiaS efryr GLMS_HAEIN : 378- 385: icnva Gssl-Vre-S dlafm NODM_RHILV : 208- 217: tylnd GdwavVgktS vqvfd NODM_RHILV : 267- 275: iaral GhyinVnd-S hvttt NODM_RHIME : 266- 275: iaial GhyvnVidkS crsds PUR1_BACSU : 197- 204: sigmm Gday-Vva-S etcaf PUR1_CHICK : 453- 461: lanyi GadsvVyl-S veglv PUR1_CHICK : 453- 461: lanyi Gads-VvylS veglv PUR1_CHICK : 464- 472: ylsve GlvssVqe-S ikark PUR1_ECOLI : 8- 15: ivgia Gvmp-Vnq-S iydal PUR1_ECOLI : 386- 394: marer Gakk-VylaS aapei PUR1_HAEIN : 2- 10: c GivgiVsq-S pvnes PUR1_HUMAN : 453- 461: laeyl GansvVyl-S veglv PUR1_HUMAN : 453- 461: laeyl Gans-VvylS veglv PUR1_RAT : 453- 461: laeyl GansvVyl-S veglv PUR1_RAT : 453- 461: laeyl Gans-VvylS veglv PUR1_SCHPO : 403- 411: mares Gakn-VylaS capmi PUR1_YEAST : 393- 401: makes Gatk-VyfaS aapai PUR1_YEAST : 437- 445: vaevi Gcer-ViyqS ledli R 18: 11.5102 35( 23) P-x(0,1)-L-x(1,2)-G Occurences: 35(23) ASN1_ASPOF : 143- 147: avgit P-LyiG wgldg ASN1_PEA : 273- 278: glkga PdLkaG kevad ASN2_PEA : 272- 277: glegs PdLkaG kevad ASNB_ECOLI : 145- 149: hlgii P-LymG ydehg ASNS_CRIGR : 54- 57: lavvd P-Lf-G mqpir ASNS_CRIGR : 178- 182: flkve PfLp-G hyevl ASNS_HUMAN : 54- 57: lavvd P-Lf-G mqpir ASNS_HUMAN : 178- 182: flkve PfLp-G hyevl ASNS_MESAU : 54- 57: lavvd P-Lf-G mqpir ASNS_MESAU : 178- 182: flkve PfLp-G hyevl GFA1_SCHPO : 195- 199: trrgs P-LivG vkseq GFA1_YEAST : 199- 203: trkgs PlLi-G vksek GFA1_YEAST : 199- 203: trkgs P-LliG vksek GFAT_HUMAN : 205- 209: trrgs PlLi-G vrseh GFAT_HUMAN : 205- 209: trrgs P-LliG vrseh GLMS_BACSU : 176- 180: aknks PlLv-G lgdtf GLMS_BACSU : 176- 180: aknks P-LlvG lgdtf GLMS_ECOLI : 62- 65: aaeeh P-Lh-G gtgia GLMS_ECOLI : 62- 66: aaeeh P-LhgG tgiah GLMS_ECOLI : 150- 154: vlrai PqLr-G aygtv GLMS_ECOLI : 177- 181: arsgs P-LviG lgmge GLMS_HAEIN : 62- 65: avsek P-Li-G gtgia GLMS_HAEIN : 62- 66: avsek P-LigG tgiah GLMS_HAEIN : 177- 181: arsgs P-LviG lgige NODM_RHILV : 61- 64: rlkea P-Ls-G tvgia NODM_RHILV : 175- 180: varng PpLviG hgdge NODM_RHILV : 176- 180: arngp P-LviG hgdge NODM_RHILV : 386- 390: adaif PiLa-G peigv NODM_RHIME : 61- 64: klkea P-Ls-G tigia NODM_RHIME : 175- 179: aartg P-LaiG hgnge NODM_RHIME : 384- 388: sdavf PiLa-G peigv PUR1_BACSU : 190- 194: pnglr P-LsiG mmgda PUR1_CHICK : 205- 209: pygnr P-LciG rlipv PUR1_ECOLI : 189- 193: pngir P-LvlG krdid PUR1_HAEIN : 189- 193: pfgir P-LvlG kreen PUR1_HUMAN : 205- 209: pygnr P-LciG rlipv PUR1_RAT : 205- 209: pygnr P-LciG rlmpv PUR1_SCHPO : 193- 197: pngir P-LviG erdtp PUR1_YEAST : 18- 23: ttpva PeLcdG ciflq PUR1_YEAST : 193- 197: pngir PlLf-G erenp PUR1_YEAST : 193- 197: pngir P-LlfG erenp S 19: 11.5102 37( 23) G-x(3)-L-x(2,4)-G Occurences: 37(23) ASN1_ASPOF : 140- 147: ardav GitpLyi--G wgldg ASN1_ASPOF : 140- 149: ardav GitpLyigwG ldgsv ASN1_PEA : 140- 147: ardai GvtsLyi--G wgldg ASN1_PEA : 140- 149: ardai GvtsLyigwG ldgsv ASN1_PEA : 271- 278: cvglk GapdLka--G kevad ASN2_PEA : 140- 147: ardai GvtsLyi--G wgldg ASN2_PEA : 140- 149: ardai GvtsLyigwG ldgsv ASN2_PEA : 270- 277: cvgle GspdLka--G kevad ASNB_ECOLI : 111- 120: lyqek GpefLddlqG mfafa ASNB_ECOLI : 142- 149: grdhl GiipLym--G ydehg ASNS_CRIGR : 365- 372: ifsge GsdeLtq--G yiyfh ASNS_HUMAN : 365- 372: ifsge GsdeLtq--G yiyfh ASNS_MESAU : 365- 372: ifsge GsdeLtq--G yiyfh GFA1_SCHPO : 25- 33: ktlvk GlkrLeyr-G ydssg GFA1_YEAST : 25- 33: dtlvd GlqrLeyr-G ydstg GFAT_HUMAN : 25- 33: etlik GlqrLeyr-G ydsag GLMS_BACSU : 19- 27: eillk GlekLeyr-G ydsag GLMS_BACSU : 91- 99: hqsal GrftLvhn-G vieny GLMS_BACSU : 500- 508: gelkh GtiaLieq-G tpvfa GLMS_ECOLI : 19- 27: eille GlrrLeyr-G ydsag GLMS_ECOLI : 274- 282: grish GqvdLsel-G pnade GLMS_HAEIN : 19- 27: eilin GlhrLeyr-G ydsag NODM_RHILV : 298- 307: aisac GtayLagliG kywfe NODM_RHIME : 297- 306: aiscc GtayLagliG kywfe PUR1_BACSU : 30- 38: qityy GlhsLqhr-G qegag PUR1_BACSU : 106- 114: rsqnn GslaLahn-G nlvna PUR1_BACSU : 187- 194: aldpn GlrpLsi--G mmgda PUR1_CHICK : 36- 44: hvitl GlvgLqhr-G qesag PUR1_CHICK : 202- 209: vrdpy GnrpLci--G rlipv PUR1_ECOLI : 186- 193: frdpn GirpLvl--G krdid PUR1_HAEIN : 186- 193: frdpf GirpLvl--G kreen PUR1_HUMAN : 36- 44: hvitl GlvgLqhr-G qesag PUR1_HUMAN : 202- 209: vrdpy GnrpLci--G rlipv PUR1_RAT : 36- 44: hvitl GlvgLqhr-G qesag PUR1_RAT : 202- 209: vrdpy GnrpLci--G rlmpv PUR1_SCHPO : 23- 31: peiye GlysLqhr-G qdaag PUR1_SCHPO : 190- 197: frdpn GirpLvi--G erdtp PUR1_YEAST : 23- 31: pelcd GcifLqhr-G qdaag PUR1_YEAST : 162- 169: snale GvyrLcr--G gyacv PUR1_YEAST : 162- 170: snale GvyrLcrg-G yacvg PUR1_YEAST : 190- 197: frdpn GirpLlf--G erenp T 20: 11.5102 41( 23) G-x(3)-L-x(1,3)-G Occurences: 41(23) ASN1_ASPOF : 140- 147: ardav GitpLyi-G wgldg ASN1_PEA : 140- 147: ardai GvtsLyi-G wgldg ASN1_PEA : 271- 278: cvglk GapdLka-G kevad ASN2_PEA : 140- 147: ardai GvtsLyi-G wgldg ASN2_PEA : 270- 277: cvgle GspdLka-G kevad ASNB_ECOLI : 142- 149: grdhl GiipLym-G ydehg ASNS_CRIGR : 2- 8: c GiwaLf--G sddcl ASNS_CRIGR : 365- 372: ifsge GsdeLtq-G yiyfh ASNS_HUMAN : 2- 8: c GiwaLf--G sddcl ASNS_HUMAN : 365- 372: ifsge GsdeLtq-G yiyfh ASNS_MESAU : 2- 8: c GiwaLf--G sddcl ASNS_MESAU : 365- 372: ifsge GsdeLtq-G yiyfh GFA1_SCHPO : 25- 33: ktlvk GlkrLeyrG ydssg GFA1_YEAST : 25- 33: dtlvd GlqrLeyrG ydstg GFA1_YEAST : 197- 203: iatrk GsplLi--G vksek GFAT_HUMAN : 25- 33: etlik GlqrLeyrG ydsag GFAT_HUMAN : 203- 209: vgtrr GsplLi--G vrseh GLMS_BACSU : 19- 27: eillk GlekLeyrG ydsag GLMS_BACSU : 91- 99: hqsal GrftLvhnG vieny GLMS_BACSU : 500- 508: gelkh GtiaLieqG tpvfa GLMS_ECOLI : 19- 27: eille GlrrLeyrG ydsag GLMS_ECOLI : 274- 282: grish GqvdLselG pnade GLMS_HAEIN : 19- 27: eilin GlhrLeyrG ydsag NODM_RHILV : 298- 304: aisac GtayLa--G ligky NODM_RHIME : 297- 303: aiscc GtayLa--G ligky PUR1_BACSU : 30- 38: qityy GlhsLqhrG qegag PUR1_BACSU : 106- 114: rsqnn GslaLahnG nlvna PUR1_BACSU : 187- 194: aldpn GlrpLsi-G mmgda PUR1_CHICK : 36- 44: hvitl GlvgLqhrG qesag PUR1_CHICK : 202- 209: vrdpy GnrpLci-G rlipv PUR1_ECOLI : 186- 193: frdpn GirpLvl-G krdid PUR1_HAEIN : 186- 193: frdpf GirpLvl-G kreen PUR1_HUMAN : 36- 44: hvitl GlvgLqhrG qesag PUR1_HUMAN : 202- 209: vrdpy GnrpLci-G rlipv PUR1_RAT : 36- 44: hvitl GlvgLqhrG qesag PUR1_RAT : 202- 209: vrdpy GnrpLci-G rlmpv PUR1_SCHPO : 23- 31: peiye GlysLqhrG qdaag PUR1_SCHPO : 190- 197: frdpn GirpLvi-G erdtp PUR1_YEAST : 23- 31: pelcd GcifLqhrG qdaag PUR1_YEAST : 162- 169: snale GvyrLcr-G gyacv PUR1_YEAST : 162- 170: snale GvyrLcrgG yacvg PUR1_YEAST : 190- 197: frdpn GirpLlf-G erenp Number of patterns evaluated by Pratt:7695 Total running time: 21 seconds