------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 2 sequences from file GAS_VESICLE_C PATTERN CONSERVATION: CM: min Nr of Seqs to Match 2 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GAS_VESICLE_C.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: GVPC_APHFL 193 GVPC_FREDI 162 Pratt run started at Thu Feb 6 19:32:18 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 116.7614 2( 2) Q-E-H-x(2)-I-A-E-x-V-x(2)-L-x(3)-T-x-E-F-L-S-V-T-T-A-x-R-Q-x-Q-A-x(2)-Q-A-x(2)-L-x(2)-F-x-K-D-L 2: 112.0914 2( 2) Q-x(3,4)-F-H-x(2)-L-x(2)-T-x(3)-F-L-x(2)-T-A-x(2)-R-x-A-Q-A-x-E-Q-K-x(2)-L-x(2)-F-R-Q-D-L-F-x-S-I-F-G 3: 111.5914 2( 2) Q-x(0,1)-E-x(0,1)-Q-A-x(2)-L-x(2)-F-H-x(2)-L-x(2)-T-x(3)-F-L-x(2)-T-A-x(2)-R-x-A-Q-A-x-E-Q-K-x(2)-L-x(2)-F-R-Q-D-L-F 4: 111.5914 2( 2) A-x(0,1)-E-x(0,1)-Q-A-x(2)-L-x(2)-F-H-x(2)-L-x(2)-T-x(3)-F-L-x(2)-T-A-x(2)-R-x-A-Q-A-x-E-Q-K-x(2)-L-x(2)-F-R-Q-D-L-F 5: 111.5914 2( 2) Q-x(1,2)-E-x(0,1)-Q-A-x(2)-L-x(2)-F-H-x(2)-L-x(2)-T-x(3)-F-L-x(2)-T-A-x(2)-R-x-A-Q-A-x-E-Q-K-x(2)-L-x(2)-F-R-Q-D-L-F 6: 111.5914 2( 2) Q-x(3)-Q-A-x(0,1)-Q-x(0,1)-L-x(2)-F-H-x(2)-L-x(2)-T-x(3)-F-L-x(2)-T-A-x(2)-R-x-A-Q-A-x-E-Q-K-x(2)-L-x(2)-F-R-Q-D-L-F 7: 111.5914 2( 2) E-x(0,1)-T-x(0,1)-Q-x-F-L-S-E-T-A-x(2)-R-x-A-Q-A-x(2)-Q-A-x(2)-L-x(2)-F-H-x(2)-L-x(2)-T-x(3)-F-L-x(2)-T-A-x(2)-R-x-A-Q 8: 107.4213 2( 2) A-x(1,2)-E-x(0,1)-Q-A-x(2)-L-x(2)-F-H-x(2)-L-x(2)-T-x(3)-F-L-x(2)-T-A-x(2)-R-x-A-Q-A-x-E-Q-K-x(2)-L-x(2)-F-R-Q-D-L 9: 106.4213 2( 2) M-x(2)-I-R-Q-E-H-x(2)-I-A-E-x-V-x(2)-L-x(3)-T-x-E-F-L-S-V-T-T-A-x(0,2)-Q-x-Q-A-x(0,2)-Q-A-x-E 10: 106.4213 2( 2) L-x(3)-I-R-Q-E-H-x(2)-I-A-E-x-V-x(2)-L-x(3)-T-x-E-F-L-S-V-T-T-A-x(0,2)-Q-x-Q-A-x(0,2)-Q-A-x-E 11: 104.2513 2( 2) L-S-E-T-A-x(2)-R-x-A-Q-A-x(2)-Q-A-x(2)-L-x(2)-F-H-x(2)-L-x(2)-T-x(3)-F-L-x(2)-T-A-x(2)-R-x-A-Q-A-x(2)-Q 12: 104.2513 2( 2) Q-x(2)-L-S-E-T-A-x(2)-R-x-A-Q-A-x(2)-Q-A-x(2)-L-x(2)-F-H-x(2)-L-x(2)-T-x(3)-F-L-x(2)-T-A-x(2)-R-x-A-Q-A 13: 104.2513 2( 2) E-x(4)-A-E-x-V-x(2)-L-x(3)-T-x-E-F-L-S-V-T-T-A-x-R-Q-x-Q-A-x(2)-Q-A-x(2)-L-x(2)-F-x-K-D-L 14: 103.2513 2( 2) E-x(0,1)-Q-x(0,1)-T-x(3)-F-L-x(2)-T-A-x(2)-R-x-A-Q-A-x-E-Q-K-x(2)-L-x(2)-F-R-Q-D-L-F-x-S-I-F-G 15: 103.2513 2( 2) L-x(0,1)-Q-x(0,1)-T-x(3)-F-L-x(2)-T-A-x(2)-R-x-A-Q-A-x-E-Q-K-x(2)-L-x(2)-F-R-Q-D-L-F-x-S-I-F-G 16: 103.2513 2( 2) H-x(3,4)-Q-x(0,1)-T-x(3)-F-L-x(2)-T-A-x(2)-R-x-A-Q-A-x-E-Q-K-x(2)-L-x(2)-F-R-Q-D-L-F-x-S-I-F-G 17: 103.2513 2( 2) K-x(3)-E-x(0,1)-T-x(0,1)-Q-x-F-L-S-E-T-A-x(2)-R-x-A-Q-A-x(2)-Q-A-x(2)-L-x(2)-F-H-x(2)-L-x(2)-T-x(3)-F-L-x(2)-T-A 18: 103.2513 2( 2) F-x(5)-E-x(0,1)-T-x(0,1)-Q-x-F-L-S-E-T-A-x(2)-R-x-A-Q-A-x(2)-Q-A-x(2)-L-x(2)-F-H-x(2)-L-x(2)-T-x(3)-F-L-x(2)-T-A 19: 103.2513 2( 2) L-x(0,1)-Q-x(0,1)-F-x-K-x(3)-E-x(2)-Q-x-F-L-S-E-T-A-x(2)-R-x-A-Q-A-x(2)-Q-A-x(2)-L-x(2)-F-H-x(2)-L-x(2)-T-x(3)-F-L 20: 102.2513 2( 2) E-x(0,2)-T-x(2)-A-x(0,2)-R-x-A-x-A-x(2)-Q-A-x(2)-L-x(2)-F-H-K-E-x(2)-E-x(2)-Q-x-F-L-S-x-T-A-x(2)-R-x-A-Q-A-x(2)-Q Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 171.7844 2( 2) F-[HY]-K-[DE]-[LM]-[AQ]-E-x(0,1)-T-x(0,1)-Q-[EQ]-F-L-S-E-T-A-x-[AE]-R-[IM]-A-Q-A-[EQ]-[EK]-Q-A-[QR]-[EQ]-L-x-[AE]-F-H-x-[EN]-L-[EQ]-[EQ]-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A B 2: 169.2943 2( 2) E-x(0,1)-T-x(0,1)-Q-[EQ]-F-L-S-E-T-A-x-[AE]-R-[IM]-A-Q-A-[EQ]-[EK]-Q-A-[QR]-[EQ]-L-x-[AE]-F-H-x-[EN]-L-[EQ]-[EQ]-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A-x-[AE]-R-[IM]-A-Q C 3: 167.9014 2( 2) Q-E-H-[QR]-[GS]-I-A-E-[EK]-V-[AT]-[EQ]-L-x(2)-[DE]-T-[QR]-E-F-L-S-V-T-T-A-x-R-Q-[AE]-Q-A-[EK]-[EK]-Q-A-[EQ]-[EN]-L-x-[AQ]-F-[HY]-K-D-L-[EQ]-[EK] D 4: 167.5688 2( 2) L-x(0,1)-Q-x(0,1)-F-[HY]-K-[DE]-[LM]-[AQ]-E-[NT]-[ST]-Q-[EQ]-F-L-S-E-T-A-x-[AE]-R-[IM]-A-Q-A-[EQ]-[EK]-Q-A-[QR]-[EQ]-L-x-[AE]-F-H-x-[EN]-L-[EQ]-[EQ]-T-[ST]-[NQ]-[EQ]-F-L E 5: 165.1655 2( 2) L-S-E-T-A-x-[AE]-R-[IM]-A-Q-A-[EQ]-[EK]-Q-A-[QR]-[EQ]-L-x-[AE]-F-H-x-[EN]-L-[EQ]-[EQ]-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A-x-[AE]-R-[IM]-A-Q-A-[EQ]-[EK]-Q F 6: 164.4419 2( 2) K-[DE]-[LM]-[AQ]-E-x(0,1)-T-x(0,1)-Q-[EQ]-F-L-S-E-T-A-x-[AE]-R-[IM]-A-Q-A-[EQ]-[EK]-Q-A-[QR]-[EQ]-L-x-[AE]-F-H-x-[EN]-L-[EQ]-[EQ]-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A G 7: 163.7247 2( 2) Q-A-[EQ]-[EK]-Q-A-x(0,1)-Q-x(0,1)-L-x-[AE]-F-H-x-[EN]-L-[EQ]-[EQ]-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A-[DK]-[AE]-R-x-A-Q-A-x-E-Q-K-[EQ]-[QS]-L-x(2)-F-R-Q-D-L-F H 8: 160.6632 2( 2) E-x(0,2)-T-[AD]-[QT]-A-x(0,2)-R-[IM]-A-x-A-[EK]-x-Q-A-[EQ]-[DE]-L-[FL]-[AQ]-F-H-K-E-[LM]-[AQ]-E-[NT]-[ST]-Q-[EQ]-F-L-S-[AE]-T-A-x-[AE]-R-[IM]-A-Q-A-[EQ]-[EK]-Q I 9: 159.5142 2( 2) Q-x(0,1)-E-x(0,1)-Q-A-[QR]-[EQ]-L-x-[AE]-F-H-x-[EN]-L-[EQ]-[EQ]-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A-[DK]-[AE]-R-x-A-Q-A-x-E-Q-K-[EQ]-[QS]-L-x(2)-F-R-Q-D-L-F J 10: 159.5142 2( 2) A-x(0,1)-E-x(0,1)-Q-A-[QR]-[EQ]-L-x-[AE]-F-H-x-[EN]-L-[EQ]-[EQ]-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A-[DK]-[AE]-R-x-A-Q-A-x-E-Q-K-[EQ]-[QS]-L-x(2)-F-R-Q-D-L-F K 11: 159.5142 2( 2) Q-x(1,2)-E-x(0,1)-Q-A-[QR]-[EQ]-L-x-[AE]-F-H-x-[EN]-L-[EQ]-[EQ]-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A-[DK]-[AE]-R-x-A-Q-A-x-E-Q-K-[EQ]-[QS]-L-x(2)-F-R-Q-D-L-F L 12: 158.7722 2( 2) Q-x(2)-L-S-E-T-A-x-[AE]-R-[IM]-A-Q-A-[EQ]-[EK]-Q-A-[QR]-[EQ]-L-x-[AE]-F-H-x-[EN]-L-[EQ]-[EQ]-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A-x-[AE]-R-[IM]-A-Q-A M 13: 155.3442 2( 2) A-x(1,2)-E-x(0,1)-Q-A-[QR]-[EQ]-L-x-[AE]-F-H-x-[EN]-L-[EQ]-[EQ]-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A-[DK]-[AE]-R-x-A-Q-A-x-E-Q-K-[EQ]-[QS]-L-x(2)-F-R-Q-D-L N 14: 153.6219 2( 2) Q-x(3,4)-F-H-x-[EN]-L-[EQ]-[EQ]-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A-[DK]-[AE]-R-x-A-Q-A-x-E-Q-K-[EQ]-[QS]-L-x(2)-F-R-Q-D-L-F-[AV]-S-I-F-G O 15: 152.3955 2( 2) L-M-[AI]-[KR]-I-R-Q-E-H-[QR]-[GS]-I-A-E-[EK]-V-[AT]-[EQ]-L-x(2)-[DE]-T-[QR]-E-F-L-S-V-T-T-A-x(0,2)-Q-[ER]-Q-A-x(0,2)-Q-A-x-E-x-[AQ]-[AE]-x(2)-[HK] P 16: 152.2188 2( 2) E-x(4)-A-E-[EK]-V-[AT]-[EQ]-L-x(2)-[DE]-T-[QR]-E-F-L-S-V-T-T-A-x-R-Q-[AE]-Q-A-[EK]-[EK]-Q-A-[EQ]-[EN]-L-x-[AQ]-F-[HY]-K-D-L-[EQ]-[EK]-[DT] Q 17: 151.4029 2( 2) M-[AI]-[KR]-I-R-Q-E-H-[QR]-[GS]-I-A-E-[EK]-V-[AT]-[EQ]-L-x(2)-[DE]-T-[QR]-E-F-L-S-V-T-T-A-x(0,2)-Q-[ER]-Q-A-x(0,2)-Q-A-x-E-x-[AQ]-[AE]-x(2)-[HK]-[DQ] R 18: 135.2404 2( 2) E-x(0,1)-Q-x(0,1)-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A-[DK]-[AE]-R-x-A-Q-A-x-E-Q-K-[EQ]-[QS]-L-x(2)-F-R-Q-D-L-F-[AV]-S-I-F-G S 19: 135.2404 2( 2) L-x(0,1)-Q-x(0,1)-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A-[DK]-[AE]-R-x-A-Q-A-x-E-Q-K-[EQ]-[QS]-L-x(2)-F-R-Q-D-L-F-[AV]-S-I-F-G T 20: 135.2404 2( 2) H-x(3,4)-Q-x(0,1)-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A-[DK]-[AE]-R-x-A-Q-A-x-E-Q-K-[EQ]-[QS]-L-x(2)-F-R-Q-D-L-F-[AV]-S-I-F-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 171.7844 2( 2) F-[HY]-K-[DE]-[LM]-[AQ]-E-x(0,1)-T-x(0,1)-Q-[EQ]-F-L-S-E-T-A-x-[AE]-R-[IM]-A-Q-A-[EQ]-[EK]-Q-A-[QR]-[EQ]-L-x-[AE]-F-H-x-[EN]-L-[EQ]-[EQ]-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A Occurences: 2(2) GVPC_APHFL : 51- 100: qelqa FYKDLQE-TsQQFLSETAqARIAQAEKQAQELlAFHkELQETSQQFLSATA qaria GVPC_FREDI : 84- 133: edlfq FHKEMAEnT-QEFLSETAkERMAQAQEQARQLrEFHqNLEQTTNEFLADTA kerma B 2: 169.2943 2( 2) E-x(0,1)-T-x(0,1)-Q-[EQ]-F-L-S-E-T-A-x-[AE]-R-[IM]-A-Q-A-[EQ]-[EK]-Q-A-[QR]-[EQ]-L-x-[AE]-F-H-x-[EN]-L-[EQ]-[EQ]-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A-x-[AE]-R-[IM]-A-Q Occurences: 2(2) GVPC_APHFL : 57- 106: ykdlq E-TsQQFLSETAqARIAQAEKQAQELlAFHkELQETSQQFLSATAqARIAQ aekqa GVPC_FREDI : 90- 139: hkema EnT-QEFLSETAkERMAQAQEQARQLrEFHqNLEQTTNEFLADTAkERMAQ aqeqk C 3: 167.9014 2( 2) Q-E-H-[QR]-[GS]-I-A-E-[EK]-V-[AT]-[EQ]-L-x(2)-[DE]-T-[QR]-E-F-L-S-V-T-T-A-x-R-Q-[AE]-Q-A-[EK]-[EK]-Q-A-[EQ]-[EN]-L-x-[AQ]-F-[HY]-K-D-L-[EQ]-[EK] Occurences: 2(2) GVPC_APHFL : 10- 57: makir QEHQSIAEKVAELslETREFLSVTTAkRQEQAEKQAQELqAFYKDLQE tsqqf GVPC_FREDI : 10- 57: mirir QEHRGIAEEVTQLfkDTQEFLSVTTAqRQAQAKEQAENLhQFHKDLEK dteef D 4: 167.5688 2( 2) L-x(0,1)-Q-x(0,1)-F-[HY]-K-[DE]-[LM]-[AQ]-E-[NT]-[ST]-Q-[EQ]-F-L-S-E-T-A-x-[AE]-R-[IM]-A-Q-A-[EQ]-[EK]-Q-A-[QR]-[EQ]-L-x-[AE]-F-H-x-[EN]-L-[EQ]-[EQ]-T-[ST]-[NQ]-[EQ]-F-L Occurences: 2(2) GVPC_APHFL : 48- 96: kqaqe L-QaFYKDLQETSQQFLSETAqARIAQAEKQAQELlAFHkELQETSQQFL sataq GVPC_FREDI : 81- 129: qqaed LfQ-FHKEMAENTQEFLSETAkERMAQAQEQARQLrEFHqNLEQTTNEFL adtak E 5: 165.1655 2( 2) L-S-E-T-A-x-[AE]-R-[IM]-A-Q-A-[EQ]-[EK]-Q-A-[QR]-[EQ]-L-x-[AE]-F-H-x-[EN]-L-[EQ]-[EQ]-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A-x-[AE]-R-[IM]-A-Q-A-[EQ]-[EK]-Q Occurences: 2(2) GVPC_APHFL : 63- 110: tsqqf LSETAqARIAQAEKQAQELlAFHkELQETSQQFLSATAqARIAQAEKQ aqell GVPC_FREDI : 96- 143: ntqef LSETAkERMAQAQEQARQLrEFHqNLEQTTNEFLADTAkERMAQAQEQ kqqlh F 6: 164.4419 2( 2) K-[DE]-[LM]-[AQ]-E-x(0,1)-T-x(0,1)-Q-[EQ]-F-L-S-E-T-A-x-[AE]-R-[IM]-A-Q-A-[EQ]-[EK]-Q-A-[QR]-[EQ]-L-x-[AE]-F-H-x-[EN]-L-[EQ]-[EQ]-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A Occurences: 2(2) GVPC_APHFL : 53- 100: lqafy KDLQE-TsQQFLSETAqARIAQAEKQAQELlAFHkELQETSQQFLSATA qaria GVPC_FREDI : 86- 133: lfqfh KEMAEnT-QEFLSETAkERMAQAQEQARQLrEFHqNLEQTTNEFLADTA kerma G 7: 163.7247 2( 2) Q-A-[EQ]-[EK]-Q-A-x(0,1)-Q-x(0,1)-L-x-[AE]-F-H-x-[EN]-L-[EQ]-[EQ]-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A-[DK]-[AE]-R-x-A-Q-A-x-E-Q-K-[EQ]-[QS]-L-x(2)-F-R-Q-D-L-F Occurences: 2(2) GVPC_APHFL : 139- 188: qaria QAEKQA-QeLlAFHkELQETSQQFLSATADARtAQAkEQKESLlkFRQDLF vsifg GVPC_FREDI : 106- 155: kerma QAQEQArQ-LrEFHqNLEQTTNEFLADTAKERmAQAqEQKQQLhqFRQDLF asifg H 8: 160.6632 2( 2) E-x(0,2)-T-[AD]-[QT]-A-x(0,2)-R-[IM]-A-x-A-[EK]-x-Q-A-[EQ]-[DE]-L-[FL]-[AQ]-F-H-K-E-[LM]-[AQ]-E-[NT]-[ST]-Q-[EQ]-F-L-S-[AE]-T-A-x-[AE]-R-[IM]-A-Q-A-[EQ]-[EK]-Q Occurences: 2(2) GVPC_APHFL : 65- 110: qqfls E--TAQA--RIAqAEkQAQELLAFHKELQETSQQFLSATAqARIAQAEKQ aqell GVPC_FREDI : 61- 110: ekdte EflTDTAkeRMAkAKqQAEDLFQFHKEMAENTQEFLSETAkERMAQAQEQ arqlr I 9: 159.5142 2( 2) Q-x(0,1)-E-x(0,1)-Q-A-[QR]-[EQ]-L-x-[AE]-F-H-x-[EN]-L-[EQ]-[EQ]-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A-[DK]-[AE]-R-x-A-Q-A-x-E-Q-K-[EQ]-[QS]-L-x(2)-F-R-Q-D-L-F Occurences: 2(2) GVPC_APHFL : 139- 188: qaria QaEkQAQELlAFHkELQETSQQFLSATADARtAQAkEQKESLlkFRQDLF vsifg GVPC_FREDI : 108- 155: rmaqa Q-E-QARQLrEFHqNLEQTTNEFLADTAKERmAQAqEQKQQLhqFRQDLF asifg J 10: 159.5142 2( 2) A-x(0,1)-E-x(0,1)-Q-A-[QR]-[EQ]-L-x-[AE]-F-H-x-[EN]-L-[EQ]-[EQ]-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A-[DK]-[AE]-R-x-A-Q-A-x-E-Q-K-[EQ]-[QS]-L-x(2)-F-R-Q-D-L-F Occurences: 2(2) GVPC_APHFL : 140- 188: ariaq A-EkQAQELlAFHkELQETSQQFLSATADARtAQAkEQKESLlkFRQDLF vsifg GVPC_FREDI : 107- 155: ermaq AqE-QARQLrEFHqNLEQTTNEFLADTAKERmAQAqEQKQQLhqFRQDLF asifg K 11: 159.5142 2( 2) Q-x(1,2)-E-x(0,1)-Q-A-[QR]-[EQ]-L-x-[AE]-F-H-x-[EN]-L-[EQ]-[EQ]-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A-[DK]-[AE]-R-x-A-Q-A-x-E-Q-K-[EQ]-[QS]-L-x(2)-F-R-Q-D-L-F Occurences: 2(2) GVPC_APHFL : 139- 188: qaria Qa-EkQAQELlAFHkELQETSQQFLSATADARtAQAkEQKESLlkFRQDLF vsifg GVPC_FREDI : 106- 155: kerma QaqE-QARQLrEFHqNLEQTTNEFLADTAKERmAQAqEQKQQLhqFRQDLF asifg L 12: 158.7722 2( 2) Q-x(2)-L-S-E-T-A-x-[AE]-R-[IM]-A-Q-A-[EQ]-[EK]-Q-A-[QR]-[EQ]-L-x-[AE]-F-H-x-[EN]-L-[EQ]-[EQ]-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A-x-[AE]-R-[IM]-A-Q-A Occurences: 2(2) GVPC_APHFL : 60- 107: lqets QqfLSETAqARIAQAEKQAQELlAFHkELQETSQQFLSATAqARIAQA ekqaq GVPC_FREDI : 93- 140: maent QefLSETAkERMAQAQEQARQLrEFHqNLEQTTNEFLADTAkERMAQA qeqkq M 13: 155.3442 2( 2) A-x(1,2)-E-x(0,1)-Q-A-[QR]-[EQ]-L-x-[AE]-F-H-x-[EN]-L-[EQ]-[EQ]-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A-[DK]-[AE]-R-x-A-Q-A-x-E-Q-K-[EQ]-[QS]-L-x(2)-F-R-Q-D-L Occurences: 2(2) GVPC_APHFL : 138- 187: aqari AqaEkQAQELlAFHkELQETSQQFLSATADARtAQAkEQKESLlkFRQDL fvsif GVPC_FREDI : 107- 154: ermaq Aq-E-QARQLrEFHqNLEQTTNEFLADTAKERmAQAqEQKQQLhqFRQDL fasif N 14: 153.6219 2( 2) Q-x(3,4)-F-H-x-[EN]-L-[EQ]-[EQ]-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A-[DK]-[AE]-R-x-A-Q-A-x-E-Q-K-[EQ]-[QS]-L-x(2)-F-R-Q-D-L-F-[AV]-S-I-F-G Occurences: 2(2) GVPC_APHFL : 145- 193: aekqa QellaFHkELQETSQQFLSATADARtAQAkEQKESLlkFRQDLFVSIFG GVPC_FREDI : 113- 160: qeqar Qlre-FHqNLEQTTNEFLADTAKERmAQAqEQKQQLhqFRQDLFASIFG tf O 15: 152.3955 2( 2) L-M-[AI]-[KR]-I-R-Q-E-H-[QR]-[GS]-I-A-E-[EK]-V-[AT]-[EQ]-L-x(2)-[DE]-T-[QR]-E-F-L-S-V-T-T-A-x(0,2)-Q-[ER]-Q-A-x(0,2)-Q-A-x-E-x-[AQ]-[AE]-x(2)-[HK] Occurences: 2(2) GVPC_APHFL : 4- 53: mis LMAKIRQEHQSIAEKVAELslETREFLSVTTAkrQEQAekQAqElQAfyK dlqet GVPC_FREDI : 4- 49: mtp LMIRIRQEHRGIAEEVTQLfkDTQEFLSVTTA--QRQA--QAkEqAEnlH qfhkd P 16: 152.2188 2( 2) E-x(4)-A-E-[EK]-V-[AT]-[EQ]-L-x(2)-[DE]-T-[QR]-E-F-L-S-V-T-T-A-x-R-Q-[AE]-Q-A-[EK]-[EK]-Q-A-[EQ]-[EN]-L-x-[AQ]-F-[HY]-K-D-L-[EQ]-[EK]-[DT] Occurences: 2(2) GVPC_APHFL : 11- 58: akirq EhqsiAEKVAELslETREFLSVTTAkRQEQAEKQAQELqAFYKDLQET sqqfl GVPC_FREDI : 11- 58: irirq EhrgiAEEVTQLfkDTQEFLSVTTAqRQAQAKEQAENLhQFHKDLEKD teefl Q 17: 151.4029 2( 2) M-[AI]-[KR]-I-R-Q-E-H-[QR]-[GS]-I-A-E-[EK]-V-[AT]-[EQ]-L-x(2)-[DE]-T-[QR]-E-F-L-S-V-T-T-A-x(0,2)-Q-[ER]-Q-A-x(0,2)-Q-A-x-E-x-[AQ]-[AE]-x(2)-[HK]-[DQ] Occurences: 2(2) GVPC_APHFL : 5- 54: misl MAKIRQEHQSIAEKVAELslETREFLSVTTAkrQEQAekQAqElQAfyKD lqets GVPC_FREDI : 5- 50: mtpl MIRIRQEHRGIAEEVTQLfkDTQEFLSVTTA--QRQA--QAkEqAEnlHQ fhkdl R 18: 135.2404 2( 2) E-x(0,1)-Q-x(0,1)-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A-[DK]-[AE]-R-x-A-Q-A-x-E-Q-K-[EQ]-[QS]-L-x(2)-F-R-Q-D-L-F-[AV]-S-I-F-G Occurences: 2(2) GVPC_APHFL : 153- 193: lafhk ElQeTSQQFLSATADARtAQAkEQKESLlkFRQDLFVSIFG GVPC_FREDI : 122- 160: fhqnl E-Q-TTNEFLADTAKERmAQAqEQKQQLhqFRQDLFASIFG tf S 19: 135.2404 2( 2) L-x(0,1)-Q-x(0,1)-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A-[DK]-[AE]-R-x-A-Q-A-x-E-Q-K-[EQ]-[QS]-L-x(2)-F-R-Q-D-L-F-[AV]-S-I-F-G Occurences: 2(2) GVPC_APHFL : 154- 193: afhke L-QeTSQQFLSATADARtAQAkEQKESLlkFRQDLFVSIFG GVPC_FREDI : 121- 160: efhqn LeQ-TTNEFLADTAKERmAQAqEQKQQLhqFRQDLFASIFG tf T 20: 135.2404 2( 2) H-x(3,4)-Q-x(0,1)-T-[ST]-[NQ]-[EQ]-F-L-[AS]-[AD]-T-A-[DK]-[AE]-R-x-A-Q-A-x-E-Q-K-[EQ]-[QS]-L-x(2)-F-R-Q-D-L-F-[AV]-S-I-F-G Occurences: 2(2) GVPC_APHFL : 151- 193: ellaf Hkel-QeTSQQFLSATADARtAQAkEQKESLlkFRQDLFVSIFG GVPC_FREDI : 118- 160: qlref HqnleQ-TTNEFLADTAKERmAQAqEQKQQLhqFRQDLFASIFG tf Number of patterns evaluated by Pratt:13635 Total running time: 1 seconds