------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 11 sequences from file GART PATTERN CONSERVATION: CM: min Nr of Seqs to Match 11 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GART.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: FMT_ECOLI 314 FMT_HAEIN 318 FTDH_RAT 902 PUR2_CHICK 1003 PUR2_DROME 1353 PUR2_DROPS 1364 PUR2_HUMAN 1010 PUR3_BACSU 195 PUR3_ECOLI 212 PUR3_HAEIN 212 PUR3_YEAST 214 Pratt run started at Thu Feb 6 19:32:13 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 15.6802 11( 11) V-x(2)-V-x(4)-D-x(1,3)-G 2: 15.6802 11( 11) G-x(5)-V-x(4,5)-D-x(1,2)-G 3: 15.6802 11( 11) S-x(0,1)-L-x(0,1)-P-x(3)-G 4: 15.6802 12( 11) H-x(2,3)-L-P-x(3,4)-G 5: 12.5102 13( 11) S-L-x(5)-G 6: 12.5102 15( 11) L-Q-A 7: 12.0102 24( 11) I-x(2,3)-L-x(5)-G 8: 12.0102 24( 11) A-x(5)-A-x(2,3)-A 9: 12.0102 19( 11) L-P-x(3,4)-G 10: 12.0102 25( 11) L-x(0,1)-P-x(3)-G 11: 12.0102 13( 11) N-x-H-x(2,3)-L 12: 12.0102 17( 11) L-x(0,1)-Q-A 13: 12.0102 25( 11) L-x(1,2)-A-x(4)-I 14: 12.0102 15( 11) L-x(0,1)-A-x(2)-M 15: 11.5102 24( 11) V-x(0,1)-I-x(4,5)-G 16: 11.5102 12( 11) I-I-x(1,3)-A 17: 11.5102 27( 11) G-x(3,4)-A-x(3,4)-I 18: 11.5102 15( 11) V-x(4)-D-x(1,3)-G 19: 11.5102 14( 11) V-x(4,5)-D-x(1,2)-G 20: 11.5102 22( 11) V-x(4,5)-D-x(0,1)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 20.1911 11( 11) V-x(2)-V-x-[DET]-x(2)-D-x(1,3)-G-x-[AGIPV] B 2: 15.6982 12( 11) S-L-x-[IP]-x(3)-G C 3: 15.6802 11( 11) G-x(5)-V-x(4,5)-D-x(1,2)-G D 4: 15.6802 11( 11) S-x(0,1)-L-x(0,1)-P-x(3)-G E 5: 15.6802 12( 11) H-x(2,3)-L-P-x(3,4)-G F 6: 15.6044 12( 11) V-x-[DEPT]-x(2)-D-x(1,3)-G-x-[AGIPV] G 7: 15.2498 15( 11) L-x(0,1)-A-[DG]-x-M H 8: 15.2276 11( 11) N-x-H-x(2,3)-L-[LP] I 9: 14.2494 22( 11) L-x(0,1)-P-x(3)-G-[AILV] J 10: 13.3888 13( 11) V-x(4,5)-D-x(1,2)-G-x(3)-[AGLPV] K 11: 12.5102 15( 11) L-Q-A L 12: 12.0102 24( 11) I-x(2,3)-L-x(5)-G M 13: 12.0102 24( 11) A-x(5)-A-x(2,3)-A N 14: 12.0102 19( 11) L-P-x(3,4)-G O 15: 12.0102 17( 11) L-x(0,1)-Q-A P 16: 12.0102 25( 11) L-x(1,2)-A-x(4)-I Q 17: 11.5102 24( 11) V-x(0,1)-I-x(4,5)-G R 18: 11.5102 12( 11) I-I-x(1,3)-A S 19: 11.5102 27( 11) G-x(3,4)-A-x(3,4)-I T 20: 11.5102 15( 11) V-x(4)-D-x(1,3)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 20.1911 11( 11) V-x(2)-V-x-[DET]-x(2)-D-x(1,3)-G-x-[AGIPV] Occurences: 11(11) FMT_ECOLI : 29- 43: ssghn VvgVfTqpDrpaGrG kklmp FMT_HAEIN : 29- 43: nsqhn ViaVyTqpDkpaGrG kklqa FTDH_RAT : 26- 39: keghe VvgVfTipDkd-GkA dplgl PUR2_CHICK : 939- 951: vtgct VhfVaEevDa--GaI ifqea PUR2_DROME : 1291- 1303: esgct VhfVdEgvDt--GaI ivqaa PUR2_DROPS : 1293- 1305: esgct VhyVdEgvDt--GaI ivqaa PUR2_HUMAN : 943- 955: vtgct VhfVaEdvDa--GqI ilqea PUR3_BACSU : 137- 149: vagit VhyVdEgmDt--GpI iaqka PUR3_ECOLI : 136- 148: ehgts VhfVtDelDg--GpV ilqak PUR3_HAEIN : 137- 149: ehgtt VhfVnEevDg--GaI vlqak PUR3_YEAST : 159- 171: tagcm VhyViEevDk--GeP lvvkk B 2: 15.6982 12( 11) S-L-x-[IP]-x(3)-G Occurences: 12(11) FMT_ECOLI : 3- 10: se SLrIifaG tpdfa FMT_ECOLI : 112- 119: invhg SLlPrwrG aapiq FMT_HAEIN : 3- 10: mk SLnIifaG tpdfa FTDH_RAT : 108- 115: iiyhp SLlPrhrG asain PUR2_CHICK : 913- 920: lnihp SLlPsfkG anahk PUR2_DROME : 1265- 1272: vnihp SLlPkypG lhvqk PUR2_DROPS : 1267- 1274: inihp SLlPkfpG lhvqk PUR2_HUMAN : 917- 924: lnihp SLlPsfkG snahe PUR3_BACSU : 111- 118: inihp SLlPafpG idavg PUR3_ECOLI : 110- 117: lnihp SLlPkypG lhthr PUR3_HAEIN : 111- 118: lnihp SLlPkyaG lntyq PUR3_YEAST : 60- 67: ptkvc SLyPytkG iaked C 3: 15.6802 11( 11) G-x(5)-V-x(4,5)-D-x(1,2)-G Occurences: 11(11) FMT_ECOLI : 130- 144: rslwa GdaetgVtimqmDv-G ldtgd FMT_HAEIN : 130- 144: rsiwa GdvqtgVtimqmDe-G ldtgd FTDH_RAT : 23- 37: qlrke GhevvgVftip-DkdG kadpl PUR2_CHICK : 936- 949: gvrvt GctvhfVaeev-Da-G aiifq PUR2_DROME : 1288- 1301: gekes GctvhfVdegv-Dt-G aiivq PUR2_DROPS : 1290- 1303: getes GctvhyVdegv-Dt-G aiivq PUR2_HUMAN : 940- 953: gvtvt GctvhfVaedv-Da-G qiilq PUR3_BACSU : 134- 147: gvkva GitvhyVdegm-Dt-G piiaq PUR3_ECOLI : 133- 146: gdeeh GtsvhfVtdel-Dg-G pvilq PUR3_HAEIN : 134- 147: gdneh GttvhfVneev-Dg-G aivlq PUR3_YEAST : 156- 169: kplta GcmvhyVieev-Dk-G eplvv D 4: 15.6802 11( 11) S-x(0,1)-L-x(0,1)-P-x(3)-G Occurences: 11(11) FMT_ECOLI : 112- 119: invhg SlL-PrwrG aapiq FMT_ECOLI : 112- 119: invhg S-LlPrwrG aapiq FMT_HAEIN : 112- 119: lnvhg SiL-PrwrG aapiq FTDH_RAT : 108- 115: iiyhp SlL-PrhrG asain FTDH_RAT : 108- 115: iiyhp S-LlPrhrG asain PUR2_CHICK : 913- 920: lnihp SlL-PsfkG anahk PUR2_CHICK : 913- 920: lnihp S-LlPsfkG anahk PUR2_DROME : 1265- 1272: vnihp SlL-PkypG lhvqk PUR2_DROME : 1265- 1272: vnihp S-LlPkypG lhvqk PUR2_DROPS : 1267- 1274: inihp SlL-PkfpG lhvqk PUR2_DROPS : 1267- 1274: inihp S-LlPkfpG lhvqk PUR2_HUMAN : 917- 924: lnihp SlL-PsfkG snahe PUR2_HUMAN : 917- 924: lnihp S-LlPsfkG snahe PUR3_BACSU : 111- 118: inihp SlL-PafpG idavg PUR3_BACSU : 111- 118: inihp S-LlPafpG idavg PUR3_ECOLI : 110- 117: lnihp SlL-PkypG lhthr PUR3_ECOLI : 110- 117: lnihp S-LlPkypG lhthr PUR3_HAEIN : 111- 118: lnihp SlL-PkyaG lntyq PUR3_HAEIN : 111- 118: lnihp S-LlPkyaG lntyq PUR3_YEAST : 60- 67: ptkvc S-LyPytkG iaked E 5: 15.6802 12( 11) H-x(2,3)-L-P-x(3,4)-G Occurences: 12(11) FMT_ECOLI : 110- 119: gcinv HgslLPrwr-G aapiq FMT_HAEIN : 110- 119: gclnv HgsiLPrwr-G aapiq FTDH_RAT : 106- 115: gsiiy HpslLPrhr-G asain PUR2_CHICK : 911- 920: kilni HpslLPsfk-G anahk PUR2_DROME : 1263- 1272: rlvni HpslLPkyp-G lhvqk PUR2_DROPS : 1265- 1274: rlini HpslLPkfp-G lhvqk PUR2_HUMAN : 664- 673: triys Hsl-LPvlrsG hvkaf PUR2_HUMAN : 915- 924: kmlni HpslLPsfk-G snahe PUR3_BACSU : 109- 118: kiini HpslLPafp-G idavg PUR3_ECOLI : 108- 117: rllni HpslLPkyp-G lhthr PUR3_HAEIN : 109- 118: kilni HpslLPkya-G lntyq PUR3_YEAST : 125- 134: pilnl Hpa-LPgcfdG tthai F 6: 15.6044 12( 11) V-x-[DEPT]-x(2)-D-x(1,3)-G-x-[AGIPV] Occurences: 12(11) FMT_ECOLI : 32- 43: hnvvg VfTqpDrpaGrG kklmp FMT_HAEIN : 32- 43: hnvia VyTqpDkpaGrG kklqa FMT_HAEIN : 257- 268: vyqak VlPhqDkpaGtI lsadk FTDH_RAT : 29- 39: hevvg VfTipDkd-GkA dplgl PUR2_CHICK : 942- 951: ctvhf VaEevDa--GaI ifqea PUR2_DROME : 1294- 1303: ctvhf VdEgvDt--GaI ivqaa PUR2_DROPS : 1296- 1305: ctvhy VdEgvDt--GaI ivqaa PUR2_HUMAN : 946- 955: ctvhf VaEdvDa--GqI ilqea PUR3_BACSU : 140- 149: itvhy VdEgmDt--GpI iaqka PUR3_ECOLI : 139- 148: tsvhf VtDelDg--GpV ilqak PUR3_HAEIN : 140- 149: ttvhf VnEevDg--GaI vlqak PUR3_YEAST : 162- 171: cmvhy ViEevDk--GeP lvvkk G 7: 15.2498 15( 11) L-x(0,1)-A-[DG]-x-M Occurences: 15(11) FMT_ECOLI : 80- 85: qlvae LqADvM vvvay FMT_HAEIN : 80- 85: selka LnADvM vvvay FTDH_RAT : 492- 496: rllyr L-ADvM eqhqe PUR2_CHICK : 273- 278: pylgv LyAGlM ltkdg PUR2_CHICK : 888- 892: velic L-AGfM rilsg PUR2_DROME : 276- 281: nyqgv LyAGlM ltrdg PUR2_DROME : 1240- 1244: vdlic L-AGfM rvlsa PUR2_DROPS : 276- 281: tyqgv LyAGlM ltrdg PUR2_DROPS : 1242- 1246: vefic L-AGfM rilsv PUR2_HUMAN : 273- 278: pytgi LyAGiM ltkng PUR2_HUMAN : 892- 896: idivc L-AGfM rilsg PUR3_BACSU : 86- 90: velia L-AGyM rligd PUR3_ECOLI : 85- 89: pdvvv L-AGfM rilsp PUR3_HAEIN : 86- 90: vdliv L-AGyM kiltp PUR3_YEAST : 153- 158: denkp LtAGcM vhyvi H 8: 15.2276 11( 11) N-x-H-x(2,3)-L-[LP] Occurences: 11(11) FMT_ECOLI : 108- 114: rlgci NvHgs-LL prwrg FMT_ECOLI : 108- 115: rlgci NvHgslLP rwrga FMT_HAEIN : 108- 115: rlgcl NvHgsiLP rwrga FTDH_RAT : 282- 288: lilfg NeHrm-LL vkniq PUR2_CHICK : 909- 915: egkil NiHps-LL psfkg PUR2_CHICK : 909- 916: egkil NiHpslLP sfkga PUR2_DROME : 1261- 1267: rgrlv NiHps-LL pkypg PUR2_DROME : 1261- 1268: rgrlv NiHpslLP kypgl PUR2_DROPS : 1263- 1269: rgrli NiHps-LL pkfpg PUR2_DROPS : 1263- 1270: rgrli NiHpslLP kfpgl PUR2_HUMAN : 913- 919: ngkml NiHps-LL psfkg PUR2_HUMAN : 913- 920: ngkml NiHpslLP sfkgs PUR3_BACSU : 107- 113: ggkii NiHps-LL pafpg PUR3_BACSU : 107- 114: ggkii NiHpslLP afpgi PUR3_ECOLI : 106- 112: agrll NiHps-LL pkypg PUR3_ECOLI : 106- 113: agrll NiHpslLP kypgl PUR3_HAEIN : 107- 113: agkil NiHps-LL pkyag PUR3_HAEIN : 107- 114: agkil NiHpslLP kyagl PUR3_YEAST : 123- 129: svpil NlHpa-LP gcfdg I 9: 14.2494 22( 11) L-x(0,1)-P-x(3)-G-[AILV] Occurences: 22(11) FMT_ECOLI : 113- 120: nvhgs LlPrwrGA apiqr FMT_ECOLI : 114- 120: vhgsl L-PrwrGA apiqr FMT_HAEIN : 114- 120: vhgsi L-PrwrGA apiqr FTDH_RAT : 109- 116: iyhps LlPrhrGA sainw FTDH_RAT : 110- 116: yhpsl L-PrhrGA sainw PUR2_CHICK : 693- 699: niprv L-PdsfGV vldal PUR2_CHICK : 914- 921: nihps LlPsfkGA nahkl PUR2_CHICK : 915- 921: ihpsl L-PsfkGA nahkl PUR2_DROME : 33- 39: aqiya L-PgshGI qlvek PUR2_DROME : 1266- 1273: nihps LlPkypGL hvqkq PUR2_DROME : 1267- 1273: ihpsl L-PkypGL hvqkq PUR2_DROPS : 33- 39: kqiya L-PgsfGI qqvek PUR2_DROPS : 1268- 1275: nihps LlPkfpGL hvqkq PUR2_DROPS : 1269- 1275: ihpsl L-PkfpGL hvqkq PUR2_HUMAN : 694- 700: niprv L-PeklGV dldaq PUR3_BACSU : 112- 119: nihps LlPafpGI davgq PUR3_BACSU : 113- 119: ihpsl L-PafpGI davgq PUR3_ECOLI : 111- 118: nihps LlPkypGL hthrq PUR3_ECOLI : 112- 118: ihpsl L-PkypGL hthrq PUR3_HAEIN : 112- 119: nihps LlPkyaGL ntyqr PUR3_HAEIN : 113- 119: ihpsl L-PkyaGL ntyqr PUR3_YEAST : 61- 68: tkvcs LyPytkGI akedk J 10: 13.3888 13( 11) V-x(4,5)-D-x(1,2)-G-x(3)-[AGLPV] Occurences: 13(11) FMT_ECOLI : 136- 148: daetg VtimqmDv-GldtG dmlyk FMT_HAEIN : 136- 148: dvqtg VtimqmDe-GldtG dmlhk FTDH_RAT : 29- 41: hevvg Vftip-DkdGkadP lglea PUR2_CHICK : 505- 517: lkiaq Vckkh-DtiGqdlV amcvn PUR2_DROME : 1294- 1305: ctvhf Vdegv-Dt-GaiiV qaavp PUR2_DROPS : 1296- 1307: ctvhy Vdegv-Dt-GaiiV qaavp PUR2_HUMAN : 946- 957: ctvhf Vaedv-Da-GqiiL qeavp PUR3_BACSU : 140- 151: itvhy Vdegm-Dt-GpiiA qkaie PUR3_ECOLI : 33- 46: gtvra VfsnkaDafGlerA rqagi PUR3_ECOLI : 139- 150: tsvhf Vtdel-Dg-GpviL qakvp PUR3_HAEIN : 34- 47: akiac VisnkaDayGlvrA kqaqi PUR3_HAEIN : 140- 151: ttvhf Vneev-Dg-GaivL qakvp PUR3_YEAST : 162- 173: cmvhy Vieev-Dk-GeplV vkkle K 11: 12.5102 15( 11) L-Q-A Occurences: 15(11) FMT_ECOLI : 80- 82: qlvae LQA dvmvv FMT_HAEIN : 19- 21: faaqh LQA ilnsq FMT_HAEIN : 46- 48: grgkk LQA spvkq FTDH_RAT : 853- 855: yvsdk LQA gtvfi PUR2_CHICK : 780- 782: kvhnl LQA lqanr PUR2_CHICK : 783- 785: nllqa LQA nrsls PUR2_DROME : 1167- 1169: gtgsn LQA lidat PUR2_DROPS : 679- 681: qllph LQA gnqik PUR2_DROPS : 1169- 1171: gkgsn LQA lidai PUR2_HUMAN : 821- 823: gtgsn LQA lidst PUR3_BACSU : 98- 100: igdtl LQA yggki PUR3_ECOLI : 14- 16: gngsn LQA iidac PUR3_ECOLI : 150- 152: ggpvi LQA kvpvf PUR3_HAEIN : 151- 153: ggaiv LQA kvpif PUR3_YEAST : 15- 17: gsgsn LQA lidaq L 12: 12.0102 24( 11) I-x(2,3)-L-x(5)-G Occurences: 24(11) FMT_ECOLI : 180- 189: gpqgl Itt-LkqladG takpe FMT_ECOLI : 280- 290: atgdg IlnlLslqpaG kkams FMT_HAEIN : 180- 189: apsal Idv-LdnlenG kfiae FTDH_RAT : 388- 397: tfref Iql-LvrklrG eddes PUR2_CHICK : 267- 276: mrkeg Ipy-LgvlyaG lmltk PUR2_CHICK : 910- 920: gkiln IhpsLlpsfkG anahk PUR2_DROME : 177- 187: qavde IlgdLkygqaG atlvv PUR2_DROME : 845- 854: hykdp Ili-LgtdgvG tklki PUR2_DROME : 955- 965: aehtg IlplLaeiqpG dvlig PUR2_DROME : 1032- 1041: rgkhg Ika-LahitgG glsen PUR2_DROME : 1262- 1272: grlvn IhpsLlpkypG lhvqk PUR2_DROPS : 177- 187: qavde IlgdLkygqaG atlvv PUR2_DROPS : 847- 856: hyvdp Ili-LgtdgvG tklki PUR2_DROPS : 957- 967: aersa IlprLdeiqpG dvlig PUR2_DROPS : 1034- 1043: rpnhg Ika-LahitgG glsen PUR2_DROPS : 1264- 1274: grlin IhpsLlpkfpG lhvqk PUR2_HUMAN : 397- 406: irenl Isa-LeeakkG laaik PUR2_HUMAN : 914- 924: gkmln IhpsLlpsfkG snahe PUR3_BACSU : 93- 103: gymrl IgdtLlqaygG kiini PUR3_BACSU : 108- 118: gkiin IhpsLlpafpG idavg PUR3_BACSU : 182- 192: wypsv IkqlLglnnrG eka PUR3_ECOLI : 107- 117: grlln IhpsLlpkypG lhthr PUR3_HAEIN : 108- 118: gkiln IhpsLlpkyaG lntyq PUR3_YEAST : 121- 130: lqsvp Iln-LhpalpG cfdgt M 13: 12.0102 24( 11) A-x(5)-A-x(2,3)-A Occurences: 24(11) FMT_ECOLI : 250- 259: vkvwk AsvidtAtn-A apgti FMT_ECOLI : 250- 260: vkvwk AsvidtAtnaA pgtil FMT_HAEIN : 73- 82: lrkee AqselkAln-A dvmvv FTDH_RAT : 65- 75: rargq AlpevvAkyqA lgael PUR2_CHICK : 161- 170: kgviv AsnkeeAck-A vndim PUR2_CHICK : 556- 565: viagi AeacqkAgc-A llgge PUR2_CHICK : 982- 991: hrafp AalqlvAsg-A vqvge PUR2_DROME : 147- 156: sapyp AlvvkaAgl-A agkgv PUR2_DROME : 147- 157: sapyp AlvvkaAglaA gkgvv PUR2_DROME : 164- 173: kgvvv AanakeAcq-A vdeil PUR2_DROME : 563- 572: lvkgm AdgcrdArc-A lvgge PUR2_DROPS : 147- 156: sapyq AlvvkaAgl-A agkgv PUR2_DROPS : 147- 157: sapyq AlvvkaAglaA gkgvv PUR2_DROPS : 164- 173: kgvvv AanvdeAcq-A vdeil PUR2_DROPS : 398- 407: aiald AslkeaAak-A tklag PUR2_DROPS : 411- 421: katkl AgtitfAgtgA qyrtd PUR2_DROPS : 563- 572: lvkgm AdgcrdAkc-A lvgge PUR2_DROPS : 898- 907: fssyy AcgkwqAal-A aevna PUR2_DROPS : 898- 908: fssyy AcgkwqAalaA evnag PUR2_DROPS : 912- 921: aaevn AgvqegAsq-A nssfv PUR2_DROPS : 921- 931: egasq AnssfvAshsA alpll PUR2_DROPS : 1333- 1342: yaehw AfpralAll-A sgalr PUR2_HUMAN : 161- 170: kgviv AkskeeAck-A vqeim PUR2_HUMAN : 556- 565: vvagi AkacgkAgc-A llgge PUR3_BACSU : 115- 125: psllp AfpgidAvgqA fragv PUR3_ECOLI : 40- 49: snkad AfglerArq-A giath PUR3_HAEIN : 41- 50: snkad AyglvrAkq-A qipqa PUR3_YEAST : 69- 79: ytkgi AkedkaArakA rsqfe N 14: 12.0102 19( 11) L-P-x(3,4)-G Occurences: 19(11) FMT_ECOLI : 114- 119: vhgsl LPrwr-G aapiq FMT_HAEIN : 114- 119: vhgsi LPrwr-G aapiq FTDH_RAT : 110- 115: yhpsl LPrhr-G asain PUR2_CHICK : 666- 672: ysktl LPvlrsG hvkay PUR2_CHICK : 693- 698: niprv LPdsf-G vvlda PUR2_CHICK : 915- 920: ihpsl LPsfk-G anahk PUR2_DROME : 33- 38: aqiya LPgsh-G iqlve PUR2_DROME : 676- 682: yvqql LPhlqkG deiks PUR2_DROME : 1267- 1272: ihpsl LPkyp-G lhvqk PUR2_DROPS : 33- 38: kqiya LPgsf-G iqqve PUR2_DROPS : 676- 682: yvqql LPhlqaG nqika PUR2_DROPS : 1269- 1274: ihpsl LPkfp-G lhvqk PUR2_HUMAN : 667- 673: yshsl LPvlrsG hvkaf PUR2_HUMAN : 694- 699: niprv LPekl-G vdlda PUR2_HUMAN : 919- 924: ihpsl LPsfk-G snahe PUR3_BACSU : 113- 118: ihpsl LPafp-G idavg PUR3_ECOLI : 112- 117: ihpsl LPkyp-G lhthr PUR3_HAEIN : 113- 118: ihpsl LPkya-G lntyq PUR3_YEAST : 128- 134: nlhpa LPgcfdG tthai O 15: 12.0102 17( 11) L-x(0,1)-Q-A Occurences: 17(11) FMT_ECOLI : 80- 82: qlvae L-QA dvmvv FMT_HAEIN : 19- 21: faaqh L-QA ilnsq FMT_HAEIN : 46- 48: grgkk L-QA spvkq FTDH_RAT : 853- 855: yvsdk L-QA gtvfi PUR2_CHICK : 779- 782: vkvhn LlQA lqanr PUR2_CHICK : 780- 782: kvhnl L-QA lqanr PUR2_CHICK : 783- 785: nllqa L-QA nrsls PUR2_DROME : 1167- 1169: gtgsn L-QA lidat PUR2_DROPS : 679- 681: qllph L-QA gnqik PUR2_DROPS : 1169- 1171: gkgsn L-QA lidai PUR2_HUMAN : 821- 823: gtgsn L-QA lidst PUR3_BACSU : 97- 100: ligdt LlQA yggki PUR3_BACSU : 98- 100: igdtl L-QA yggki PUR3_ECOLI : 14- 16: gngsn L-QA iidac PUR3_ECOLI : 150- 152: ggpvi L-QA kvpvf PUR3_HAEIN : 151- 153: ggaiv L-QA kvpif PUR3_YEAST : 15- 17: gsgsn L-QA lidaq P 16: 12.0102 25( 11) L-x(1,2)-A-x(4)-I Occurences: 25(11) FMT_ECOLI : 265- 272: apgti Le-AnkqgI qvatg FMT_HAEIN : 269- 276: pagti Ls-AdkngI qiatv FTDH_RAT : 853- 860: yvsdk Lq-AgtvfI ntynk PUR2_CHICK : 152- 159: vkasg La-AgkgvI vasnk PUR2_CHICK : 701- 708: sfgvv Ld-AlswkI peifc PUR2_CHICK : 846- 854: agveg LrkAeragI ptrvi PUR2_DROME : 258- 266: vqkav LerAvqglI kerin PUR2_DROME : 626- 634: lpssg LhcAgfneI ltqla PUR2_DROME : 947- 955: lagfa LgiAehtgI lplla PUR2_DROME : 1198- 1206: pgvlg LqrAtqagI pslvi PUR2_DROME : 1230- 1238: eltrn LkaArvdlI clagf PUR2_DROPS : 258- 266: vqrav LerAvqglI kerit PUR2_DROPS : 626- 634: lpssg LhcAgfneI ltqla PUR2_DROPS : 949- 957: lagfa LgiAersaI lprld PUR2_DROPS : 1169- 1176: gkgsn Lq-AlidaI rdsaq PUR2_DROPS : 1200- 1208: agvlg LerAakagI psmvi PUR2_DROPS : 1232- 1240: eltrh LktArvefI clagf PUR2_HUMAN : 152- 159: vkasg La-AgkgvI vaksk PUR2_HUMAN : 702- 709: klgvd Ld-AqtwrI prvfs PUR2_HUMAN : 850- 858: aavag LdkAeragI ptrvi PUR3_BACSU : 97- 105: ligdt LlqAyggkI inihp PUR3_BACSU : 98- 105: igdtl Lq-AyggkI inihp PUR3_ECOLI : 43- 51: adafg LerArqagI athtl PUR3_HAEIN : 44- 52: adayg LvrAkqaqI pqavf PUR3_YEAST : 46- 54: kkayg LtrAadnnI ptkvc Q 17: 11.5102 24( 11) V-x(0,1)-I-x(4,5)-G Occurences: 24(11) FMT_ECOLI : 136- 144: daetg VtImqmdvG ldtgd FMT_HAEIN : 136- 144: dvqtg VtImqmdeG ldtgd FTDH_RAT : 5- 12: mkia V-IgqslfG qevyc FTDH_RAT : 94- 101: fipme V-InaprhG siiyh FTDH_RAT : 623- 630: ipkgv VnIlpgs-G slvgq PUR2_CHICK : 610- 618: iadgd VvIgvassG vhsng PUR2_CHICK : 611- 618: adgdv V-IgvassG vhsng PUR2_CHICK : 858- 865: giptr V-IdhkqyG srtef PUR2_DROME : 340- 346: vsavg V-Ilasa-G ypets PUR2_DROME : 390- 398: tnggr VlIaialdG slkea PUR2_DROME : 473- 479: tqrpg V-Igglg-G fgglf PUR2_DROME : 495- 502: tykep V-IaeatqG vgaki PUR2_DROME : 967- 975: iqpgd VlIglpssG vhsng PUR2_DROME : 1188- 1194: advvl V-Isnkp-G vlglq PUR2_DROPS : 495- 502: sykep V-IaeatqG vgaki PUR2_DROPS : 969- 977: iqpgd VlIglpssG vhsng PUR2_DROPS : 1190- 1196: aeivl V-Isnka-G vlgle PUR2_HUMAN : 5- 12: maar VlIigsg-G rehtl PUR2_HUMAN : 188- 195: ageti V-IeelldG eevsc PUR2_HUMAN : 312- 319: sdlye V-IqstldG llcts PUR3_BACSU : 181- 187: kwyps V-Ikqll-G lnnrg PUR3_ECOLI : 180- 187: aiypl V-IswfadG rlkmh PUR3_HAEIN : 181- 188: qiypl V-IkwfteG rlrlk PUR3_YEAST : 162- 169: cmvhy V-IeevdkG eplvv R 18: 11.5102 12( 11) I-I-x(1,3)-A Occurences: 12(11) FMT_ECOLI : 6- 9: seslr IIf--A gtpdf FMT_HAEIN : 6- 9: mksln IIf--A gtpdf FTDH_RAT : 681- 684: gkspl IIf--A dcdln FTDH_RAT : 811- 816: fgpim IIsrfA dgdvd PUR2_CHICK : 951- 956: vdaga IIfqeA vpvki PUR2_DROME : 1303- 1307: vdtga IIvq-A avpil PUR2_DROME : 1303- 1308: vdtga IIvqaA vpilp PUR2_DROPS : 1305- 1309: vdtga IIvq-A avpil PUR2_DROPS : 1305- 1310: vdtga IIvqaA vpilp PUR2_HUMAN : 955- 960: vdagq IIlqeA vpvkr PUR3_BACSU : 149- 154: mdtgp IIaqkA ieide PUR3_ECOLI : 17- 20: snlqa IId--A cktnk PUR3_HAEIN : 18- 21: tnlqt IId--A chsgd PUR3_YEAST : 99- 102: ekpdv IIc--A gwlli S 19: 11.5102 27( 11) G-x(3,4)-A-x(3,4)-I Occurences: 27(11) FMT_ECOLI : 262- 272: tnaap GtileAnkqgI qvatg FMT_ECOLI : 271- 280: eankq Giqv-AtgdgI lnlls FMT_HAEIN : 266- 276: qdkpa GtilsAdkngI qiatv FTDH_RAT : 175- 183: pegik Gmvq-Avrl-I aegta PUR2_CHICK : 35- 45: vfvap GnagtAnsgkI snsav PUR2_CHICK : 441- 449: tykns Gvdi-Aagn-I lvqki PUR2_CHICK : 672- 680: pvlrs Ghvk-Ayah-I tgggl PUR2_CHICK : 698- 708: lpdsf GvvldAlswkI peifc PUR2_CHICK : 845- 854: kagve Glrk-AeragI ptrvi PUR2_DROME : 535- 545: dvlev GaepvAfldyI acgkl PUR2_DROME : 625- 634: glpss Glhc-AgfneI ltqla PUR2_DROME : 915- 924: sgvqe Garq-AnssfI dshsa PUR2_DROME : 1197- 1206: kpgvl Glqr-AtqagI pslvi PUR2_DROPS : 535- 545: dllel GaepvAfldyI acgkl PUR2_DROPS : 625- 634: glpss Glhc-AgfneI ltqla PUR2_DROPS : 1166- 1176: lisgk GsnlqAlidaI rdsaq PUR2_DROPS : 1199- 1208: kagvl GleraAkag-I psmvi PUR2_DROPS : 1199- 1208: kagvl Gler-AakagI psmvi PUR2_HUMAN : 35- 45: vlvap GnagtAcsekI sntai PUR2_HUMAN : 383- 392: kvvth GgrvlAvta-I renli PUR2_HUMAN : 384- 392: vvthg Grvl-Avta-I renli PUR2_HUMAN : 673- 681: pvlrs Ghvk-Afah-I tgggl PUR2_HUMAN : 699- 709: lpekl GvdldAqtwrI prvfs PUR2_HUMAN : 849- 858: kaava Gldk-AeragI ptrvi PUR3_BACSU : 147- 155: egmdt Gpii-Aqka-I eideh PUR3_ECOLI : 42- 51: kadaf Gler-ArqagI athtl PUR3_HAEIN : 43- 52: kaday Glvr-AkqaqI pqavf PUR3_YEAST : 45- 54: skkay GltraAdnn-I ptkvc PUR3_YEAST : 45- 54: skkay Gltr-AadnnI ptkvc T 20: 11.5102 15( 11) V-x(4)-D-x(1,3)-G Occurences: 15(11) FMT_ECOLI : 32- 41: hnvvg VftqpDrpaG rgkkl FMT_HAEIN : 32- 41: hnvia VytqpDkpaG rgkkl FMT_HAEIN : 257- 266: vyqak VlphqDkpaG tilsa FTDH_RAT : 29- 37: hevvg VftipDkd-G kadpl PUR2_CHICK : 505- 513: lkiaq VckkhDti-G qdlva PUR2_CHICK : 642- 651: dfssq VgvsgDqtlG dlllt PUR2_CHICK : 942- 949: ctvhf VaeevDa--G aiifq PUR2_DROME : 1294- 1301: ctvhf VdegvDt--G aiivq PUR2_DROPS : 1296- 1303: ctvhy VdegvDt--G aiivq PUR2_HUMAN : 946- 953: ctvhf VaedvDa--G qiilq PUR3_BACSU : 140- 147: itvhy VdegmDt--G piiaq PUR3_ECOLI : 136- 145: ehgts VhfvtDeldG gpvil PUR3_ECOLI : 139- 146: tsvhf VtdelDg--G pvilq PUR3_HAEIN : 140- 147: ttvhf VneevDg--G aivlq PUR3_YEAST : 162- 169: cmvhy VieevDk--G eplvv Number of patterns evaluated by Pratt:2612 Total running time: 4 seconds