------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file GARS PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GARS.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: PUR2_BACSU 422 PUR2_CHICK 1003 PUR2_DROME 1353 PUR2_DROPS 1364 PUR2_ECOLI 429 PUR2_HAEIN 429 PUR2_HUMAN 1010 PUR2_SALTY 429 PUR2_SCHPO 788 PUR2_YEAST 802 Pratt run started at Thu Feb 6 19:31:28 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 69.8909 10( 10) A-x(0,2)-Q-D-H-K-R-x(4)-D-x-G-x-N-T-G-G-M-G-x-Y-x-P-x-P 2: 58.3807 10( 10) H-K-R-x(4)-D-x-G-x-N-T-G-G-M-G-x-Y-x-P-x-P 3: 58.3807 10( 10) D-x-K-R-x(4)-D-x-G-x-N-T-G-G-M-G-x-Y-x-P-x-P 4: 58.3807 10( 10) Q-x(2)-K-R-x(4)-D-x-G-x-N-T-G-G-M-G-x-Y-x-P-x-P 5: 57.8807 10( 10) D-x(0,1)-K-R-x(4)-D-x-G-x-N-T-G-G-M-G-x-Y-x-P-x-P 6: 57.8807 10( 10) Q-x(1,2)-K-R-x(4)-D-x-G-x-N-T-G-G-M-G-x-Y-x-P-x-P 7: 52.2107 10( 10) R-x(1,3)-G-x(0,2)-D-x-G-x-N-T-G-G-M-G-x-Y-x-P-x-P 8: 49.0406 13( 10) G-x(0,2)-D-x-G-x-N-T-G-G-M-G-x-Y-x-P-x-P 9: 48.5406 13( 10) G-x(0,2)-D-x(0,1)-G-x-N-T-G-G-M-G-x-Y-x-P-x-P 10: 48.0406 10( 10) K-x(5)-D-x-G-x-N-T-G-G-M-G-x(0,2)-A-x(2)-P-x(1,3)-P 11: 45.8706 10( 10) D-x-G-x-N-T-G-G-M-G-x-Y-x-P-x-P 12: 45.3706 10( 10) V-x-E-x-N-x-R-F-G-D-P-E-x-Q-x(2,3)-L 13: 45.3706 10( 10) D-x-G-x(0,1)-N-T-G-G-M-G-x-Y-x-P-x-P 14: 44.8706 10( 10) D-x(0,1)-G-x(1,2)-N-T-G-G-M-G-x-Y-x-P-x-P 15: 44.8706 10( 10) D-x(0,1)-G-x(0,1)-N-T-G-G-M-G-x-Y-x-P-x-P 16: 44.8706 15( 10) D-x(1,3)-G-x-N-T-G-G-M-G-x-Y-x-P-x-P 17: 44.3706 15( 10) D-x(1,3)-G-x(0,1)-N-T-G-G-M-G-x-Y-x-P-x-P 18: 43.8706 10( 10) D-x-G-x-N-T-G-G-M-G-x(0,2)-A-x(2)-P-x(1,3)-P 19: 43.8706 13( 10) G-x(0,2)-D-x-G-x-N-T-G-G-M-G-x(0,2)-A-x(2)-P 20: 41.7005 10( 10) V-x-K-A-x-G-x-A-A-G-K-G-V Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 116.8861 10( 10) V-[IV]-K-A-[ADS]-G-[IL]-A-A-G-K-G-V-x-[IV]-[AP]-x-[NST]-x(2)-E-[AS]-x(2)-[AC]-[ILV]-x-[DES]-[FIM]-[LM]-x-[DEGNT]-x(2)-[FY]-G-[ADEQST]-[AE]-[AGS]-x(3)-V-[IV]-x-E-x-[FL]-x-[EG] B 2: 92.0231 10( 10) A-x(0,2)-Q-D-H-K-R-[AILV]-x-[DEN]-x-D-x-G-[LP]-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] C 3: 80.5130 10( 10) H-K-R-[AILV]-x-[DEN]-x-D-x-G-[LP]-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] D 4: 80.5130 10( 10) D-x-K-R-[AILV]-x-[DEN]-x-D-x-G-[LP]-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] E 5: 80.5130 10( 10) Q-x(2)-K-R-[AILV]-x-[DEN]-x-D-x-G-[LP]-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] F 6: 80.0130 10( 10) D-x(0,1)-K-R-[AILV]-x-[DEN]-x-D-x-G-[LP]-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] G 7: 80.0130 10( 10) Q-x(1,2)-K-R-[AILV]-x-[DEN]-x-D-x-G-[LP]-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] H 8: 69.5135 10( 10) R-x(1,3)-G-x(0,2)-D-x-G-[LP]-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] I 9: 67.3397 10( 10) K-R-[AILV]-x-[DEN]-x-D-x-G-[LP]-N-T-G-G-M-G-x(0,2)-A-x-[ACST]-P-x(1,3)-P-x-[ILV]-x(2)-[DEPT] J 10: 66.3434 13( 10) G-x(0,2)-D-x-G-[LP]-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] K 11: 65.8434 13( 10) G-x(0,2)-D-x(0,1)-G-[LP]-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] L 12: 60.3516 10( 10) V-[IL]-E-[FY]-N-[ACV]-R-F-G-D-P-E-[CT]-Q-x(2,3)-L-x(4)-[DST] M 13: 59.9559 10( 10) D-x-G-x-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] N 14: 59.4559 10( 10) D-x-G-x(0,1)-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] O 15: 58.9559 10( 10) D-x(0,1)-G-x(1,2)-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] P 16: 58.9559 10( 10) D-x(0,1)-G-x(0,1)-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] Q 17: 58.9559 15( 10) D-x(1,3)-G-x-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] R 18: 58.4559 15( 10) D-x(1,3)-G-x(0,1)-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] S 19: 57.8582 13( 10) G-x(0,2)-D-x-G-[LP]-N-T-G-G-M-G-x(0,2)-A-x-[ACST]-P-[ACV]-[AP]-x-[IPV] T 20: 54.1702 10( 10) D-x-G-[LP]-N-T-G-G-M-G-x(0,2)-A-x-[ACST]-P-x(1,3)-P-x-[ILV]-x(2)-[DEPT] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 116.8861 10( 10) V-[IV]-K-A-[ADS]-G-[IL]-A-A-G-K-G-V-x-[IV]-[AP]-x-[NST]-x(2)-E-[AS]-x(2)-[AC]-[ILV]-x-[DES]-[FIM]-[LM]-x-[DEGNT]-x(2)-[FY]-G-[ADEQST]-[AE]-[AGS]-x(3)-V-[IV]-x-E-x-[FL]-x-[EG] Occurences: 10(10) PUR2_BACSU : 141- 190: kgapi VIKADGLAAGKGVtVAmTeeEAiaCLhDFLeDekFGDASasvVIeEyLsG eefsl PUR2_CHICK : 146- 195: nfpal VVKASGLAAGKGViVAsNkeEAckAVnDIMqDktFGTAGetvVVeElLeG eevsc PUR2_DROME : 149- 198: pypal VVKAAGLAAGKGVvVAaNakEAcqAVdEILgDlkYGQAGatlVVeElLeG eevsv PUR2_DROPS : 149- 198: pyqal VVKAAGLAAGKGVvVAaNvdEAcqAVdEILgDlkYGQAGatlVVeElLeG eeisv PUR2_ECOLI : 143- 192: kgapi VIKADGLAAGKGViVAmTleEAeaAVhDMLaGnaFGDAGhriVIeEfLdG eeasf PUR2_HAEIN : 143- 192: kgtpi VVKADGLAAGKGViVAmTlqEAedAVrDMLsGnaFGEAGsrvVIeEfLdG eeasf PUR2_HUMAN : 146- 195: dfpal VVKASGLAAGKGViVAkSkeEAckAVqEIMqEkaFGAAGetiVIeElLdG eevsc PUR2_SALTY : 143- 192: kgapi VIKADGLAAGKGViVAmTleEAeaAVhDMLaGnaFGDAGhriVIeEfLdG eeasf PUR2_SCHPO : 149- 198: ctfdv VIKADGLAAGKGViIPkTkkEAfeALeSIMlNeeFGSAGknvVIeElLeG eelsi PUR2_YEAST : 149- 198: tdkaf VIKADGIAAGKGViIPsSidESvqAIkDIMvTkqFGEEAgkqVViEqFlE gdeis B 2: 92.0231 10( 10) A-x(0,2)-Q-D-H-K-R-[AILV]-x-[DEN]-x-D-x-G-[LP]-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] Occurences: 10(10) PUR2_BACSU : 210- 238: ypmvi A--QDHKRAfDgDkGPNTGGMGAYSPVPqIS eetvr PUR2_CHICK : 215- 243: apmpp A--QDHKRLkDgDeGPNTGGMGAYSPAPqIS kdlll PUR2_DROME : 218- 246: ramlp A--QDHKRLgNgDtGPNTGGMGAYCPCPlIS qpale PUR2_DROPS : 218- 246: ramlp A--QDHKRLgNgDtGPNTGGMGAYCPCPlIS qpale PUR2_ECOLI : 210- 240: hvlpm AtsQDHKRVgDkDtGPNTGGMGAYSPAPvVT ddvhq PUR2_HAEIN : 210- 240: nvepm AssQDHKRVgEnDtGLNTGGMGAYSPAPvIT peihs PUR2_HUMAN : 215- 243: apmpp A--QDHKRLlEgDgGPNTGGMGAYCPAPqVS ndlll PUR2_SALTY : 210- 240: hvlpm AtsQDHKRVgNgDtGPNTGGMGAYSPAPvVT devhq PUR2_SCHPO : 218- 246: rslpp A--QDHKRAfDgDkGPNTGGMGCYAPTPvAS pklle PUR2_YEAST : 219- 247: fnlpv A--QDHKRIfDgDkGLNTGGMGAYAPAPvAT psllk C 3: 80.5130 10( 10) H-K-R-[AILV]-x-[DEN]-x-D-x-G-[LP]-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] Occurences: 10(10) PUR2_BACSU : 213- 238: viaqd HKRAfDgDkGPNTGGMGAYSPVPqIS eetvr PUR2_CHICK : 218- 243: ppaqd HKRLkDgDeGPNTGGMGAYSPAPqIS kdlll PUR2_DROME : 221- 246: lpaqd HKRLgNgDtGPNTGGMGAYCPCPlIS qpale PUR2_DROPS : 221- 246: lpaqd HKRLgNgDtGPNTGGMGAYCPCPlIS qpale PUR2_ECOLI : 215- 240: atsqd HKRVgDkDtGPNTGGMGAYSPAPvVT ddvhq PUR2_HAEIN : 215- 240: assqd HKRVgEnDtGLNTGGMGAYSPAPvIT peihs PUR2_HUMAN : 218- 243: ppaqd HKRLlEgDgGPNTGGMGAYCPAPqVS ndlll PUR2_SALTY : 215- 240: atsqd HKRVgNgDtGPNTGGMGAYSPAPvVT devhq PUR2_SCHPO : 221- 246: ppaqd HKRAfDgDkGPNTGGMGCYAPTPvAS pklle PUR2_YEAST : 222- 247: pvaqd HKRIfDgDkGLNTGGMGAYAPAPvAT psllk D 4: 80.5130 10( 10) D-x-K-R-[AILV]-x-[DEN]-x-D-x-G-[LP]-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] Occurences: 10(10) PUR2_BACSU : 212- 238: mviaq DhKRAfDgDkGPNTGGMGAYSPVPqIS eetvr PUR2_CHICK : 217- 243: mppaq DhKRLkDgDeGPNTGGMGAYSPAPqIS kdlll PUR2_DROME : 220- 246: mlpaq DhKRLgNgDtGPNTGGMGAYCPCPlIS qpale PUR2_DROPS : 220- 246: mlpaq DhKRLgNgDtGPNTGGMGAYCPCPlIS qpale PUR2_ECOLI : 214- 240: matsq DhKRVgDkDtGPNTGGMGAYSPAPvVT ddvhq PUR2_HAEIN : 214- 240: massq DhKRVgEnDtGLNTGGMGAYSPAPvIT peihs PUR2_HUMAN : 217- 243: mppaq DhKRLlEgDgGPNTGGMGAYCPAPqVS ndlll PUR2_SALTY : 214- 240: matsq DhKRVgNgDtGPNTGGMGAYSPAPvVT devhq PUR2_SCHPO : 220- 246: lppaq DhKRAfDgDkGPNTGGMGCYAPTPvAS pklle PUR2_YEAST : 221- 247: lpvaq DhKRIfDgDkGLNTGGMGAYAPAPvAT psllk E 5: 80.5130 10( 10) Q-x(2)-K-R-[AILV]-x-[DEN]-x-D-x-G-[LP]-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] Occurences: 10(10) PUR2_BACSU : 211- 238: pmvia QdhKRAfDgDkGPNTGGMGAYSPVPqIS eetvr PUR2_CHICK : 216- 243: pmppa QdhKRLkDgDeGPNTGGMGAYSPAPqIS kdlll PUR2_DROME : 219- 246: amlpa QdhKRLgNgDtGPNTGGMGAYCPCPlIS qpale PUR2_DROPS : 219- 246: amlpa QdhKRLgNgDtGPNTGGMGAYCPCPlIS qpale PUR2_ECOLI : 213- 240: pmats QdhKRVgDkDtGPNTGGMGAYSPAPvVT ddvhq PUR2_HAEIN : 213- 240: pmass QdhKRVgEnDtGLNTGGMGAYSPAPvIT peihs PUR2_HUMAN : 216- 243: pmppa QdhKRLlEgDgGPNTGGMGAYCPAPqVS ndlll PUR2_SALTY : 213- 240: pmats QdhKRVgNgDtGPNTGGMGAYSPAPvVT devhq PUR2_SCHPO : 219- 246: slppa QdhKRAfDgDkGPNTGGMGCYAPTPvAS pklle PUR2_YEAST : 220- 247: nlpva QdhKRIfDgDkGLNTGGMGAYAPAPvAT psllk F 6: 80.0130 10( 10) D-x(0,1)-K-R-[AILV]-x-[DEN]-x-D-x-G-[LP]-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] Occurences: 10(10) PUR2_BACSU : 212- 238: mviaq DhKRAfDgDkGPNTGGMGAYSPVPqIS eetvr PUR2_CHICK : 217- 243: mppaq DhKRLkDgDeGPNTGGMGAYSPAPqIS kdlll PUR2_DROME : 220- 246: mlpaq DhKRLgNgDtGPNTGGMGAYCPCPlIS qpale PUR2_DROPS : 220- 246: mlpaq DhKRLgNgDtGPNTGGMGAYCPCPlIS qpale PUR2_ECOLI : 214- 240: matsq DhKRVgDkDtGPNTGGMGAYSPAPvVT ddvhq PUR2_HAEIN : 214- 240: massq DhKRVgEnDtGLNTGGMGAYSPAPvIT peihs PUR2_HUMAN : 217- 243: mppaq DhKRLlEgDgGPNTGGMGAYCPAPqVS ndlll PUR2_SALTY : 214- 240: matsq DhKRVgNgDtGPNTGGMGAYSPAPvVT devhq PUR2_SCHPO : 220- 246: lppaq DhKRAfDgDkGPNTGGMGCYAPTPvAS pklle PUR2_YEAST : 221- 247: lpvaq DhKRIfDgDkGLNTGGMGAYAPAPvAT psllk G 7: 80.0130 10( 10) Q-x(1,2)-K-R-[AILV]-x-[DEN]-x-D-x-G-[LP]-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] Occurences: 10(10) PUR2_BACSU : 211- 238: pmvia QdhKRAfDgDkGPNTGGMGAYSPVPqIS eetvr PUR2_CHICK : 216- 243: pmppa QdhKRLkDgDeGPNTGGMGAYSPAPqIS kdlll PUR2_DROME : 219- 246: amlpa QdhKRLgNgDtGPNTGGMGAYCPCPlIS qpale PUR2_DROPS : 219- 246: amlpa QdhKRLgNgDtGPNTGGMGAYCPCPlIS qpale PUR2_ECOLI : 213- 240: pmats QdhKRVgDkDtGPNTGGMGAYSPAPvVT ddvhq PUR2_HAEIN : 213- 240: pmass QdhKRVgEnDtGLNTGGMGAYSPAPvIT peihs PUR2_HUMAN : 216- 243: pmppa QdhKRLlEgDgGPNTGGMGAYCPAPqVS ndlll PUR2_SALTY : 213- 240: pmats QdhKRVgNgDtGPNTGGMGAYSPAPvVT devhq PUR2_SCHPO : 219- 246: slppa QdhKRAfDgDkGPNTGGMGCYAPTPvAS pklle PUR2_YEAST : 220- 247: nlpva QdhKRIfDgDkGLNTGGMGAYAPAPvAT psllk H 8: 69.5135 10( 10) R-x(1,3)-G-x(0,2)-D-x-G-[LP]-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] Occurences: 10(10) PUR2_BACSU : 215- 238: aqdhk RafdG--DkGPNTGGMGAYSPVPqIS eetvr PUR2_CHICK : 220- 243: aqdhk RlkdG--DeGPNTGGMGAYSPAPqIS kdlll PUR2_DROME : 223- 246: aqdhk RlgnG--DtGPNTGGMGAYCPCPlIS qpale PUR2_DROME : 223- 246: aqdhk Rl--GngDtGPNTGGMGAYCPCPlIS qpale PUR2_DROPS : 223- 246: aqdhk RlgnG--DtGPNTGGMGAYCPCPlIS qpale PUR2_DROPS : 223- 246: aqdhk Rl--GngDtGPNTGGMGAYCPCPlIS qpale PUR2_ECOLI : 217- 240: sqdhk Rv--GdkDtGPNTGGMGAYSPAPvVT ddvhq PUR2_HAEIN : 217- 240: sqdhk Rv--GenDtGLNTGGMGAYSPAPvIT peihs PUR2_HUMAN : 220- 243: aqdhk RlleG--DgGPNTGGMGAYCPAPqVS ndlll PUR2_SALTY : 217- 240: sqdhk RvgnG--DtGPNTGGMGAYSPAPvVT devhq PUR2_SALTY : 217- 240: sqdhk Rv--GngDtGPNTGGMGAYSPAPvVT devhq PUR2_SCHPO : 223- 246: aqdhk RafdG--DkGPNTGGMGCYAPTPvAS pklle PUR2_YEAST : 224- 247: aqdhk RifdG--DkGLNTGGMGAYAPAPvAT psllk I 9: 67.3397 10( 10) K-R-[AILV]-x-[DEN]-x-D-x-G-[LP]-N-T-G-G-M-G-x(0,2)-A-x-[ACST]-P-x(1,3)-P-x-[ILV]-x(2)-[DEPT] Occurences: 10(10) PUR2_BACSU : 214- 240: iaqdh KRAfDgDkGPNTGGMG--AySPv--PqIseE tvrha PUR2_CHICK : 219- 245: paqdh KRLkDgDeGPNTGGMG--AySPa--PqIskD lllki PUR2_DROME : 222- 248: paqdh KRLgNgDtGPNTGGMG--AyCPc--PlIsqP alelv PUR2_DROPS : 222- 248: paqdh KRLgNgDtGPNTGGMG--AyCPc--PlIsqP alelv PUR2_ECOLI : 216- 242: tsqdh KRVgDkDtGPNTGGMG--AySPa--PvVtdD vhqrt PUR2_HAEIN : 216- 242: ssqdh KRVgEnDtGLNTGGMG--AySPa--PvItpE ihsri PUR2_HUMAN : 219- 245: paqdh KRLlEgDgGPNTGGMG--AyCPa--PqVsnD lllki PUR2_SALTY : 216- 242: tsqdh KRVgNgDtGPNTGGMG--AySPa--PvVtdE vhqrt PUR2_SCHPO : 222- 252: paqdh KRAfDgDkGPNTGGMGcyApTPvasPkLleT vqsti PUR2_YEAST : 223- 253: vaqdh KRIfDgDkGLNTGGMGayApAPvatPsLlkT idsqi J 10: 66.3434 13( 10) G-x(0,2)-D-x-G-[LP]-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] Occurences: 13(10) PUR2_BACSU : 219- 238: krafd G--DkGPNTGGMGAYSPVPqIS eetvr PUR2_CHICK : 224- 243: krlkd G--DeGPNTGGMGAYSPAPqIS kdlll PUR2_DROME : 225- 246: dhkrl GngDtGPNTGGMGAYCPCPlIS qpale PUR2_DROME : 227- 246: krlgn G--DtGPNTGGMGAYCPCPlIS qpale PUR2_DROPS : 225- 246: dhkrl GngDtGPNTGGMGAYCPCPlIS qpale PUR2_DROPS : 227- 246: krlgn G--DtGPNTGGMGAYCPCPlIS qpale PUR2_ECOLI : 219- 240: dhkrv GdkDtGPNTGGMGAYSPAPvVT ddvhq PUR2_HAEIN : 219- 240: dhkrv GenDtGLNTGGMGAYSPAPvIT peihs PUR2_HUMAN : 224- 243: krlle G--DgGPNTGGMGAYCPAPqVS ndlll PUR2_SALTY : 219- 240: dhkrv GngDtGPNTGGMGAYSPAPvVT devhq PUR2_SALTY : 221- 240: krvgn G--DtGPNTGGMGAYSPAPvVT devhq PUR2_SCHPO : 227- 246: krafd G--DkGPNTGGMGCYAPTPvAS pklle PUR2_YEAST : 228- 247: krifd G--DkGLNTGGMGAYAPAPvAT psllk K 11: 65.8434 13( 10) G-x(0,2)-D-x(0,1)-G-[LP]-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] Occurences: 13(10) PUR2_BACSU : 219- 238: krafd G--DkGPNTGGMGAYSPVPqIS eetvr PUR2_CHICK : 224- 243: krlkd G--DeGPNTGGMGAYSPAPqIS kdlll PUR2_DROME : 225- 246: dhkrl GngDtGPNTGGMGAYCPCPlIS qpale PUR2_DROME : 227- 246: krlgn G--DtGPNTGGMGAYCPCPlIS qpale PUR2_DROPS : 225- 246: dhkrl GngDtGPNTGGMGAYCPCPlIS qpale PUR2_DROPS : 227- 246: krlgn G--DtGPNTGGMGAYCPCPlIS qpale PUR2_ECOLI : 219- 240: dhkrv GdkDtGPNTGGMGAYSPAPvVT ddvhq PUR2_HAEIN : 219- 240: dhkrv GenDtGLNTGGMGAYSPAPvIT peihs PUR2_HUMAN : 224- 243: krlle G--DgGPNTGGMGAYCPAPqVS ndlll PUR2_SALTY : 219- 240: dhkrv GngDtGPNTGGMGAYSPAPvVT devhq PUR2_SALTY : 221- 240: krvgn G--DtGPNTGGMGAYSPAPvVT devhq PUR2_SCHPO : 227- 246: krafd G--DkGPNTGGMGCYAPTPvAS pklle PUR2_YEAST : 228- 247: krifd G--DkGLNTGGMGAYAPAPvAT psllk L 12: 60.3516 10( 10) V-[IL]-E-[FY]-N-[ACV]-R-F-G-D-P-E-[CT]-Q-x(2,3)-L-x(4)-[DST] Occurences: 10(10) PUR2_BACSU : 281- 302: engsk VIEFNARFGDPETQvv-LprmeS dlvqv PUR2_CHICK : 286- 307: kdgpk VLEFNCRFGDPECQvi-LpllkS dlyev PUR2_DROME : 289- 310: rdgpr VLEFNCRFGDPETQvi-LplleS dlfdv PUR2_DROPS : 289- 310: rdgpr VLEFNCRFGDPETQvi-LplleT dlfev PUR2_ECOLI : 284- 306: qgnpk VIEFNCRFGDPETQpimLrmksD lvelc PUR2_HAEIN : 284- 306: ngqpk VIEFNCRFGDPETQpimLrlksD lvelc PUR2_HUMAN : 286- 307: kngpk VLEFNCRFGDPECQvi-LpllkS dlyev PUR2_SALTY : 284- 306: qgnpk VIEFNCRFGDPETQpimLrmksD lvdlc PUR2_SCHPO : 289- 310: psgpr VLEYNVRFGDPETQav-LplleS dlaei PUR2_YEAST : 296- 317: qlvpe VLEYNVRFGDPETQav-LslldD qtdla M 13: 59.9559 10( 10) D-x-G-x-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] Occurences: 10(10) PUR2_BACSU : 220- 238: rafdg DkGpNTGGMGAYSPVPqIS eetvr PUR2_CHICK : 225- 243: rlkdg DeGpNTGGMGAYSPAPqIS kdlll PUR2_DROME : 228- 246: rlgng DtGpNTGGMGAYCPCPlIS qpale PUR2_DROPS : 228- 246: rlgng DtGpNTGGMGAYCPCPlIS qpale PUR2_ECOLI : 222- 240: rvgdk DtGpNTGGMGAYSPAPvVT ddvhq PUR2_HAEIN : 222- 240: rvgen DtGlNTGGMGAYSPAPvIT peihs PUR2_HUMAN : 225- 243: rlleg DgGpNTGGMGAYCPAPqVS ndlll PUR2_SALTY : 222- 240: rvgng DtGpNTGGMGAYSPAPvVT devhq PUR2_SCHPO : 228- 246: rafdg DkGpNTGGMGCYAPTPvAS pklle PUR2_YEAST : 229- 247: rifdg DkGlNTGGMGAYAPAPvAT psllk N 14: 59.4559 10( 10) D-x-G-x(0,1)-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] Occurences: 10(10) PUR2_BACSU : 220- 238: rafdg DkGpNTGGMGAYSPVPqIS eetvr PUR2_CHICK : 225- 243: rlkdg DeGpNTGGMGAYSPAPqIS kdlll PUR2_DROME : 228- 246: rlgng DtGpNTGGMGAYCPCPlIS qpale PUR2_DROPS : 228- 246: rlgng DtGpNTGGMGAYCPCPlIS qpale PUR2_ECOLI : 222- 240: rvgdk DtGpNTGGMGAYSPAPvVT ddvhq PUR2_HAEIN : 222- 240: rvgen DtGlNTGGMGAYSPAPvIT peihs PUR2_HUMAN : 225- 243: rlleg DgGpNTGGMGAYCPAPqVS ndlll PUR2_SALTY : 222- 240: rvgng DtGpNTGGMGAYSPAPvVT devhq PUR2_SCHPO : 228- 246: rafdg DkGpNTGGMGCYAPTPvAS pklle PUR2_YEAST : 229- 247: rifdg DkGlNTGGMGAYAPAPvAT psllk O 15: 58.9559 10( 10) D-x(0,1)-G-x(1,2)-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] Occurences: 10(10) PUR2_BACSU : 220- 238: rafdg DkGp-NTGGMGAYSPVPqIS eetvr PUR2_CHICK : 225- 243: rlkdg DeGp-NTGGMGAYSPAPqIS kdlll PUR2_DROME : 228- 246: rlgng DtGp-NTGGMGAYCPCPlIS qpale PUR2_DROPS : 228- 246: rlgng DtGp-NTGGMGAYCPCPlIS qpale PUR2_ECOLI : 222- 240: rvgdk DtGp-NTGGMGAYSPAPvVT ddvhq PUR2_HAEIN : 222- 240: rvgen DtGl-NTGGMGAYSPAPvIT peihs PUR2_HUMAN : 225- 243: rlleg DgGp-NTGGMGAYCPAPqVS ndlll PUR2_HUMAN : 225- 243: rlleg D-GgpNTGGMGAYCPAPqVS ndlll PUR2_SALTY : 222- 240: rvgng DtGp-NTGGMGAYSPAPvVT devhq PUR2_SCHPO : 228- 246: rafdg DkGp-NTGGMGCYAPTPvAS pklle PUR2_YEAST : 229- 247: rifdg DkGl-NTGGMGAYAPAPvAT psllk P 16: 58.9559 10( 10) D-x(0,1)-G-x(0,1)-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] Occurences: 10(10) PUR2_BACSU : 220- 238: rafdg DkGpNTGGMGAYSPVPqIS eetvr PUR2_CHICK : 225- 243: rlkdg DeGpNTGGMGAYSPAPqIS kdlll PUR2_DROME : 228- 246: rlgng DtGpNTGGMGAYCPCPlIS qpale PUR2_DROPS : 228- 246: rlgng DtGpNTGGMGAYCPCPlIS qpale PUR2_ECOLI : 222- 240: rvgdk DtGpNTGGMGAYSPAPvVT ddvhq PUR2_HAEIN : 222- 240: rvgen DtGlNTGGMGAYSPAPvIT peihs PUR2_HUMAN : 225- 243: rlleg DgGpNTGGMGAYCPAPqVS ndlll PUR2_SALTY : 222- 240: rvgng DtGpNTGGMGAYSPAPvVT devhq PUR2_SCHPO : 228- 246: rafdg DkGpNTGGMGCYAPTPvAS pklle PUR2_YEAST : 229- 247: rifdg DkGlNTGGMGAYAPAPvAT psllk Q 17: 58.9559 15( 10) D-x(1,3)-G-x-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] Occurences: 15(10) PUR2_BACSU : 218- 238: hkraf DgdkGpNTGGMGAYSPVPqIS eetvr PUR2_BACSU : 220- 238: rafdg Dk--GpNTGGMGAYSPVPqIS eetvr PUR2_CHICK : 223- 243: hkrlk DgdeGpNTGGMGAYSPAPqIS kdlll PUR2_CHICK : 225- 243: rlkdg De--GpNTGGMGAYSPAPqIS kdlll PUR2_DROME : 228- 246: rlgng Dt--GpNTGGMGAYCPCPlIS qpale PUR2_DROPS : 228- 246: rlgng Dt--GpNTGGMGAYCPCPlIS qpale PUR2_ECOLI : 220- 240: hkrvg DkdtGpNTGGMGAYSPAPvVT ddvhq PUR2_ECOLI : 222- 240: rvgdk Dt--GpNTGGMGAYSPAPvVT ddvhq PUR2_HAEIN : 222- 240: rvgen Dt--GlNTGGMGAYSPAPvIT peihs PUR2_HUMAN : 225- 243: rlleg Dg--GpNTGGMGAYCPAPqVS ndlll PUR2_SALTY : 222- 240: rvgng Dt--GpNTGGMGAYSPAPvVT devhq PUR2_SCHPO : 226- 246: hkraf DgdkGpNTGGMGCYAPTPvAS pklle PUR2_SCHPO : 228- 246: rafdg Dk--GpNTGGMGCYAPTPvAS pklle PUR2_YEAST : 227- 247: hkrif DgdkGlNTGGMGAYAPAPvAT psllk PUR2_YEAST : 229- 247: rifdg Dk--GlNTGGMGAYAPAPvAT psllk R 18: 58.4559 15( 10) D-x(1,3)-G-x(0,1)-N-T-G-G-M-G-[AC]-Y-[ACS]-P-[ACTV]-P-x-[AIV]-[ST] Occurences: 15(10) PUR2_BACSU : 218- 238: hkraf DgdkGpNTGGMGAYSPVPqIS eetvr PUR2_BACSU : 220- 238: rafdg Dk--GpNTGGMGAYSPVPqIS eetvr PUR2_CHICK : 223- 243: hkrlk DgdeGpNTGGMGAYSPAPqIS kdlll PUR2_CHICK : 225- 243: rlkdg De--GpNTGGMGAYSPAPqIS kdlll PUR2_DROME : 228- 246: rlgng Dt--GpNTGGMGAYCPCPlIS qpale PUR2_DROPS : 228- 246: rlgng Dt--GpNTGGMGAYCPCPlIS qpale PUR2_ECOLI : 220- 240: hkrvg DkdtGpNTGGMGAYSPAPvVT ddvhq PUR2_ECOLI : 222- 240: rvgdk Dt--GpNTGGMGAYSPAPvVT ddvhq PUR2_HAEIN : 222- 240: rvgen Dt--GlNTGGMGAYSPAPvIT peihs PUR2_HUMAN : 225- 243: rlleg Dg--GpNTGGMGAYCPAPqVS ndlll PUR2_SALTY : 222- 240: rvgng Dt--GpNTGGMGAYSPAPvVT devhq PUR2_SCHPO : 226- 246: hkraf DgdkGpNTGGMGCYAPTPvAS pklle PUR2_SCHPO : 228- 246: rafdg Dk--GpNTGGMGCYAPTPvAS pklle PUR2_YEAST : 227- 247: hkrif DgdkGlNTGGMGAYAPAPvAT psllk PUR2_YEAST : 229- 247: rifdg Dk--GlNTGGMGAYAPAPvAT psllk S 19: 57.8582 13( 10) G-x(0,2)-D-x-G-[LP]-N-T-G-G-M-G-x(0,2)-A-x-[ACST]-P-[ACV]-[AP]-x-[IPV] Occurences: 13(10) PUR2_BACSU : 219- 237: krafd G--DkGPNTGGMG--AySPVPqI seetv PUR2_CHICK : 224- 242: krlkd G--DeGPNTGGMG--AySPAPqI skdll PUR2_DROME : 225- 245: dhkrl GngDtGPNTGGMG--AyCPCPlI sqpal PUR2_DROME : 227- 245: krlgn G--DtGPNTGGMG--AyCPCPlI sqpal PUR2_DROPS : 225- 245: dhkrl GngDtGPNTGGMG--AyCPCPlI sqpal PUR2_DROPS : 227- 245: krlgn G--DtGPNTGGMG--AyCPCPlI sqpal PUR2_ECOLI : 219- 239: dhkrv GdkDtGPNTGGMG--AySPAPvV tddvh PUR2_HAEIN : 219- 239: dhkrv GenDtGLNTGGMG--AySPAPvI tpeih PUR2_HUMAN : 224- 242: krlle G--DgGPNTGGMG--AyCPAPqV sndll PUR2_SALTY : 219- 239: dhkrv GngDtGPNTGGMG--AySPAPvV tdevh PUR2_SALTY : 221- 239: krvgn G--DtGPNTGGMG--AySPAPvV tdevh PUR2_SCHPO : 227- 247: krafd G--DkGPNTGGMGcyApTPVAsP kllet PUR2_YEAST : 228- 248: krifd G--DkGLNTGGMGayApAPVAtP sllkt T 20: 54.1702 10( 10) D-x-G-[LP]-N-T-G-G-M-G-x(0,2)-A-x-[ACST]-P-x(1,3)-P-x-[ILV]-x(2)-[DEPT] Occurences: 10(10) PUR2_BACSU : 220- 240: rafdg DkGPNTGGMG--AySPv--PqIseE tvrha PUR2_CHICK : 225- 245: rlkdg DeGPNTGGMG--AySPa--PqIskD lllki PUR2_DROME : 228- 248: rlgng DtGPNTGGMG--AyCPc--PlIsqP alelv PUR2_DROPS : 228- 248: rlgng DtGPNTGGMG--AyCPc--PlIsqP alelv PUR2_ECOLI : 222- 242: rvgdk DtGPNTGGMG--AySPa--PvVtdD vhqrt PUR2_HAEIN : 222- 242: rvgen DtGLNTGGMG--AySPa--PvItpE ihsri PUR2_HUMAN : 225- 245: rlleg DgGPNTGGMG--AyCPa--PqVsnD lllki PUR2_SALTY : 222- 242: rvgng DtGPNTGGMG--AySPa--PvVtdE vhqrt PUR2_SCHPO : 228- 252: rafdg DkGPNTGGMGcyApTPvasPkLleT vqsti PUR2_YEAST : 229- 253: rifdg DkGLNTGGMGayApAPvatPsLlkT idsqi Number of patterns evaluated by Pratt:41443 Total running time: 45 seconds