------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file GAL_P_UDP_TRANSF_I PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GAL_P_UDP_TRANSF_I.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: GAL7_CRYNE 381 GAL7_ECOLI 347 GAL7_HAEIN 349 GAL7_HUMAN 379 GAL7_KLULA 370 GAL7_MOUSE 393 GAL7_RAT 379 GAL7_SALTY 348 GAL7_STRLI 354 GAL7_YEAST 365 Pratt run started at Thu Feb 6 19:31:15 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 40.7005 10( 10) F-E-N-x-G-x(0,1)-A-x(1,2)-G-x(4)-H-P-H-x-Q 2: 40.2005 10( 10) Q-x(0,1)-F-x(0,2)-E-N-x-G-x(3)-G-x(4)-H-P-H-x-Q 3: 36.5305 10( 10) E-N-x-G-x(0,1)-A-x(1,2)-G-x(4)-H-P-H-x-Q 4: 32.3604 10( 10) Y-x(2,3)-L-R-x(2)-T-V-R-x(2,3)-V-x(4)-L 5: 32.3604 10( 10) N-x-G-x(0,1)-A-x(1,2)-G-x(4)-H-P-H-x-Q 6: 31.8604 10( 10) P-x(1,3)-L-x(0,1)-L-R-S-x(4)-K-x(3)-G-x(3)-L 7: 28.6904 10( 10) L-x(0,1)-L-R-S-x(4)-K-x(3)-G-x(3)-L 8: 28.6904 10( 10) P-L-L-x(1,2)-S-A-x(2)-R-x(4)-G 9: 28.6904 10( 10) Y-x(2)-L-L-R-x(3,4)-R-x-F-x(2)-G 10: 28.1904 10( 10) L-R-S-x(0,1)-A-x(2,3)-K-x(3)-G-x(3)-L 11: 28.1904 19( 10) P-x(0,1)-L-L-x(1,2)-S-A-x(2)-R-x(4)-G 12: 28.1904 10( 10) H-x(4,5)-P-P-x(2)-R-x-A-x-V-x(0,1)-R 13: 28.1904 10( 10) G-x(0,1)-A-x(1,2)-G-x(4)-H-P-H-x-Q 14: 27.6904 10( 10) Q-R-D-x(3)-E-x-A-x(2,4)-R-x(0,1)-L 15: 27.1904 10( 10) E-x(1,3)-Q-x(0,2)-R-D-x(3)-E-x-A-x(3)-L 16: 24.5203 10( 10) R-x(2)-T-V-R-x(2,3)-V-x(4)-L 17: 24.5203 10( 10) L-L-R-x(3,4)-R-x-F-x(2)-G 18: 24.5203 10( 10) P-P-x(2)-R-x-A-x-V-x(0,1)-R 19: 24.0203 10( 10) R-S-x(0,1)-A-x(2,3)-K-x(3)-G-x(3)-L 20: 24.0203 10( 10) H-x(4)-P-P-x(1,2)-R-x-A-x(2,3)-R Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 84.9247 10( 10) Q-x(0,1)-F-x(0,2)-E-N-[KR]-G-[AT]-x-[IM]-G-[CV]-[ST]-x-[GLP]-H-P-H-[CG]-Q-[AIV]-[WY]-[ACT]-x-[DENPS]-x(2)-[PT]-[DNPS]-x-[APTV]-[AEQS]-x(3)-[DEKR] B 2: 78.9196 10( 10) F-E-N-[KR]-G-x(0,1)-A-x(1,2)-G-[CV]-[ST]-x-[GLP]-H-P-H-[CG]-Q-[AIV]-[WY]-[ACT]-x-[DENPS]-x(2)-[PT]-[DNPS]-x-[APTV]-[AEQS]-x(3)-[DEKR] C 3: 74.7496 10( 10) E-N-[KR]-G-x(0,1)-A-x(1,2)-G-[CV]-[ST]-x-[GLP]-H-P-H-[CG]-Q-[AIV]-[WY]-[ACT]-x-[DENPS]-x(2)-[PT]-[DNPS]-x-[APTV]-[AEQS]-x(3)-[DEKR] D 4: 70.5795 10( 10) N-[KR]-G-x(0,1)-A-x(1,2)-G-[CV]-[ST]-x-[GLP]-H-P-H-[CG]-Q-[AIV]-[WY]-[ACT]-x-[DENPS]-x(2)-[PT]-[DNPS]-x-[APTV]-[AEQS]-x(3)-[DEKR] E 5: 63.1613 10( 10) G-x(0,1)-A-x(1,2)-G-[CV]-[ST]-x-[GLP]-H-P-H-[CG]-Q-[AIV]-[WY]-[ACT]-x-[DENPS]-x(2)-[PT]-[DNPS]-x-[APTV]-[AEQS]-x(3)-[DEKR] F 6: 58.1143 10( 10) H-x(4,5)-P-P-x-[LV]-R-[QS]-A-[ET]-V-x(0,1)-R-x-[FL]-x-[IV]-x(4)-[LV]-x-[AEQ]-x-[ADQ]-x(2)-[ILP]-x(4)-[AEG] G 7: 54.4442 10( 10) P-P-x-[LV]-R-[QS]-A-[ET]-V-x(0,1)-R-x-[FL]-x-[IV]-x(4)-[LV]-x-[AEQ]-x-[ADQ]-x(2)-[ILP]-x(4)-[AEG] H 8: 52.0856 10( 10) Y-[LP]-[EP]-L-L-R-x(3,4)-R-x-F-x(2)-G-x(4)-[AGP]-x(2)-[AQ]-x(4)-[APS]-x(2)-[AG]-[AQS]-x(2)-[FLV] I 9: 50.0095 10( 10) P-x(1,3)-L-x(0,1)-L-R-S-[AL]-[AT]-[AV]-[HR]-K-x(2)-[TV]-G-x(3)-L-x-[ADEQ] J 10: 48.7820 10( 10) P-L-L-x(1,2)-S-A-[PT]-[SV]-R-x(4)-G-x(4)-[AGP]-x(2)-[ADQ]-x(2)-[ILP]-x(4)-[AG]-x(3)-[ALV] K 11: 48.2820 19( 10) P-x(0,1)-L-L-x(1,2)-S-A-[PT]-[SV]-R-x(4)-G-x(4)-[AGP]-x(2)-[ADQ]-x(2)-[ILP]-x(4)-[AG]-x(3)-[ALV] L 12: 47.9518 10( 10) E-x(1,3)-Q-x(0,2)-R-D-[ILV]-[PTV]-[APS]-E-[QR]-A-[AP]-x-[KR]-L-[KR] M 13: 46.8394 10( 10) L-x(0,1)-L-R-S-[AL]-[AT]-[AV]-[HR]-K-x(2)-[TV]-G-x(3)-L-x-[ADEQ] N 14: 44.6639 10( 10) Y-x(2,3)-L-R-[DS]-[AD]-T-V-R-x(2,3)-V-[DG]-x(3)-L-[AEG] O 15: 43.1755 10( 10) H-x-[HR]-x(2)-P-P-x(1,2)-R-[AS]-A-x(2,3)-R-[EK]-[FV]-x-[DV]-[GV] P 16: 41.5280 10( 10) L-L-R-x(3,4)-R-x-F-x(2)-G-x(4)-[AGP]-x(2)-[AQ]-x(4)-[APS]-x(2)-[AG]-[AQS]-x(2)-[FLV] Q 17: 41.3858 10( 10) Q-R-D-[ILV]-[PTV]-[APS]-E-[QR]-A-x(2,4)-R-x(0,1)-L-[DKR] R 18: 36.8238 10( 10) R-[DS]-[AD]-T-V-R-x(2,3)-V-[DG]-x(3)-L-[AEG] S 19: 34.6242 10( 10) Y-x(2,3)-L-R-[DS]-[AD]-T-V-R-x(2,3)-V T 20: 33.6085 10( 10) L-R-S-x(0,1)-A-x(2,3)-K-x(2)-[TV]-G-x(3)-L-x-[ADEQ] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 84.9247 10( 10) Q-x(0,1)-F-x(0,2)-E-N-[KR]-G-[AT]-x-[IM]-G-[CV]-[ST]-x-[GLP]-H-P-H-[CG]-Q-[AIV]-[WY]-[ACT]-x-[DENPS]-x(2)-[PT]-[DNPS]-x-[APTV]-[AEQS]-x(3)-[DEKR] Occurences: 10(10) GAL7_CRYNE : 171- 206: sdgcv QiF--ENRGAmMGCSaPHPHGQVWTtSfvPDePAteiE nfvry GAL7_ECOLI : 148- 183: typwv QvF--ENKGAaMGCSnPHPHGQIWAnSflPNeAEredR lqkey GAL7_HAEIN : 150- 185: kyqwv QiF--ENKGAaMGCSnPHPHGQIWAnSflPNeVAredR tqrdy GAL7_HUMAN : 169- 204: qypwv QiF--ENKGAmMGCSnPHPHCQVWAsSflPDiAQreeR sqqay GAL7_KLULA : 162- 197: pykyl QiF--ENKGTaMGCSnLHPHGQAWClDsiPSePAkefD hfeky GAL7_MOUSE : 150- 185: qypwv QiF--ENKGAmMGCSnPHPHCQVWAsSflPDiAQreeR sqqty GAL7_RAT : 169- 204: qypwv QiF--ENKGAmMGCSnPHPHCQVWAsNflPDiAQreeR sqqty GAL7_SALTY : 148- 183: typwv QvF--ENKGAaMGCSnPHPHGQVWAnSflPNeAAereD rlqka GAL7_STRLI : 148- 185: lpsve QvFcfENRGAeIGVTlGHPHGQIYAyPftTPrTAlmlR slaah GAL7_YEAST : 164- 199: pfkyv QiF--ENKGTaMGCSnLHPHGQAWClEsiPSeVSqelK sfdky B 2: 78.9196 10( 10) F-E-N-[KR]-G-x(0,1)-A-x(1,2)-G-[CV]-[ST]-x-[GLP]-H-P-H-[CG]-Q-[AIV]-[WY]-[ACT]-x-[DENPS]-x(2)-[PT]-[DNPS]-x-[APTV]-[AEQS]-x(3)-[DEKR] Occurences: 10(10) GAL7_CRYNE : 173- 206: gcvqi FENRG-AmmGCSaPHPHGQVWTtSfvPDePAteiE nfvry GAL7_ECOLI : 150- 183: pwvqv FENKGaAm-GCSnPHPHGQIWAnSflPNeAEredR lqkey GAL7_ECOLI : 150- 183: pwvqv FENKG-AamGCSnPHPHGQIWAnSflPNeAEredR lqkey GAL7_HAEIN : 152- 185: qwvqi FENKGaAm-GCSnPHPHGQIWAnSflPNeVAredR tqrdy GAL7_HAEIN : 152- 185: qwvqi FENKG-AamGCSnPHPHGQIWAnSflPNeVAredR tqrdy GAL7_HUMAN : 171- 204: pwvqi FENKG-AmmGCSnPHPHCQVWAsSflPDiAQreeR sqqay GAL7_KLULA : 164- 197: kylqi FENKGtAm-GCSnLHPHGQAWClDsiPSePAkefD hfeky GAL7_MOUSE : 152- 185: pwvqi FENKG-AmmGCSnPHPHCQVWAsSflPDiAQreeR sqqty GAL7_RAT : 171- 204: pwvqi FENKG-AmmGCSnPHPHCQVWAsNflPDiAQreeR sqqty GAL7_SALTY : 150- 183: pwvqv FENKGaAm-GCSnPHPHGQVWAnSflPNeAAereD rlqka GAL7_SALTY : 150- 183: pwvqv FENKG-AamGCSnPHPHGQVWAnSflPNeAAereD rlqka GAL7_STRLI : 152- 185: eqvfc FENRG-AeiGVTlGHPHGQIYAyPftTPrTAlmlR slaah GAL7_YEAST : 166- 199: kyvqi FENKGtAm-GCSnLHPHGQAWClEsiPSeVSqelK sfdky C 3: 74.7496 10( 10) E-N-[KR]-G-x(0,1)-A-x(1,2)-G-[CV]-[ST]-x-[GLP]-H-P-H-[CG]-Q-[AIV]-[WY]-[ACT]-x-[DENPS]-x(2)-[PT]-[DNPS]-x-[APTV]-[AEQS]-x(3)-[DEKR] Occurences: 10(10) GAL7_CRYNE : 174- 206: cvqif ENRG-AmmGCSaPHPHGQVWTtSfvPDePAteiE nfvry GAL7_ECOLI : 151- 183: wvqvf ENKGaAm-GCSnPHPHGQIWAnSflPNeAEredR lqkey GAL7_ECOLI : 151- 183: wvqvf ENKG-AamGCSnPHPHGQIWAnSflPNeAEredR lqkey GAL7_HAEIN : 153- 185: wvqif ENKGaAm-GCSnPHPHGQIWAnSflPNeVAredR tqrdy GAL7_HAEIN : 153- 185: wvqif ENKG-AamGCSnPHPHGQIWAnSflPNeVAredR tqrdy GAL7_HUMAN : 172- 204: wvqif ENKG-AmmGCSnPHPHCQVWAsSflPDiAQreeR sqqay GAL7_KLULA : 165- 197: ylqif ENKGtAm-GCSnLHPHGQAWClDsiPSePAkefD hfeky GAL7_MOUSE : 153- 185: wvqif ENKG-AmmGCSnPHPHCQVWAsSflPDiAQreeR sqqty GAL7_RAT : 172- 204: wvqif ENKG-AmmGCSnPHPHCQVWAsNflPDiAQreeR sqqty GAL7_SALTY : 151- 183: wvqvf ENKGaAm-GCSnPHPHGQVWAnSflPNeAAereD rlqka GAL7_SALTY : 151- 183: wvqvf ENKG-AamGCSnPHPHGQVWAnSflPNeAAereD rlqka GAL7_STRLI : 153- 185: qvfcf ENRG-AeiGVTlGHPHGQIYAyPftTPrTAlmlR slaah GAL7_YEAST : 167- 199: yvqif ENKGtAm-GCSnLHPHGQAWClEsiPSeVSqelK sfdky D 4: 70.5795 10( 10) N-[KR]-G-x(0,1)-A-x(1,2)-G-[CV]-[ST]-x-[GLP]-H-P-H-[CG]-Q-[AIV]-[WY]-[ACT]-x-[DENPS]-x(2)-[PT]-[DNPS]-x-[APTV]-[AEQS]-x(3)-[DEKR] Occurences: 10(10) GAL7_CRYNE : 175- 206: vqife NRG-AmmGCSaPHPHGQVWTtSfvPDePAteiE nfvry GAL7_ECOLI : 152- 183: vqvfe NKGaAm-GCSnPHPHGQIWAnSflPNeAEredR lqkey GAL7_ECOLI : 152- 183: vqvfe NKG-AamGCSnPHPHGQIWAnSflPNeAEredR lqkey GAL7_HAEIN : 154- 185: vqife NKGaAm-GCSnPHPHGQIWAnSflPNeVAredR tqrdy GAL7_HAEIN : 154- 185: vqife NKG-AamGCSnPHPHGQIWAnSflPNeVAredR tqrdy GAL7_HUMAN : 173- 204: vqife NKG-AmmGCSnPHPHCQVWAsSflPDiAQreeR sqqay GAL7_KLULA : 166- 197: lqife NKGtAm-GCSnLHPHGQAWClDsiPSePAkefD hfeky GAL7_MOUSE : 154- 185: vqife NKG-AmmGCSnPHPHCQVWAsSflPDiAQreeR sqqty GAL7_RAT : 173- 204: vqife NKG-AmmGCSnPHPHCQVWAsNflPDiAQreeR sqqty GAL7_SALTY : 152- 183: vqvfe NKGaAm-GCSnPHPHGQVWAnSflPNeAAereD rlqka GAL7_SALTY : 152- 183: vqvfe NKG-AamGCSnPHPHGQVWAnSflPNeAAereD rlqka GAL7_STRLI : 154- 185: vfcfe NRG-AeiGVTlGHPHGQIYAyPftTPrTAlmlR slaah GAL7_YEAST : 168- 199: vqife NKGtAm-GCSnLHPHGQAWClEsiPSeVSqelK sfdky E 5: 63.1613 10( 10) G-x(0,1)-A-x(1,2)-G-[CV]-[ST]-x-[GLP]-H-P-H-[CG]-Q-[AIV]-[WY]-[ACT]-x-[DENPS]-x(2)-[PT]-[DNPS]-x-[APTV]-[AEQS]-x(3)-[DEKR] Occurences: 10(10) GAL7_CRYNE : 177- 206: ifenr G-AmmGCSaPHPHGQVWTtSfvPDePAteiE nfvry GAL7_ECOLI : 154- 183: vfenk GaAm-GCSnPHPHGQIWAnSflPNeAEredR lqkey GAL7_ECOLI : 154- 183: vfenk G-AamGCSnPHPHGQIWAnSflPNeAEredR lqkey GAL7_HAEIN : 156- 185: ifenk GaAm-GCSnPHPHGQIWAnSflPNeVAredR tqrdy GAL7_HAEIN : 156- 185: ifenk G-AamGCSnPHPHGQIWAnSflPNeVAredR tqrdy GAL7_HUMAN : 175- 204: ifenk G-AmmGCSnPHPHCQVWAsSflPDiAQreeR sqqay GAL7_KLULA : 168- 197: ifenk GtAm-GCSnLHPHGQAWClDsiPSePAkefD hfeky GAL7_MOUSE : 156- 185: ifenk G-AmmGCSnPHPHCQVWAsSflPDiAQreeR sqqty GAL7_RAT : 175- 204: ifenk G-AmmGCSnPHPHCQVWAsNflPDiAQreeR sqqty GAL7_SALTY : 154- 183: vfenk GaAm-GCSnPHPHGQVWAnSflPNeAAereD rlqka GAL7_SALTY : 154- 183: vfenk G-AamGCSnPHPHGQVWAnSflPNeAAereD rlqka GAL7_STRLI : 156- 185: cfenr G-AeiGVTlGHPHGQIYAyPftTPrTAlmlR slaah GAL7_YEAST : 170- 199: ifenk GtAm-GCSnLHPHGQAWClEsiPSeVSqelK sfdky F 6: 58.1143 10( 10) H-x(4,5)-P-P-x-[LV]-R-[QS]-A-[ET]-V-x(0,1)-R-x-[FL]-x-[IV]-x(4)-[LV]-x-[AEQ]-x-[ADQ]-x(2)-[ILP]-x(4)-[AEG] Occurences: 10(10) GAL7_CRYNE : 323- 358: nsaqv Hfhfy-PPlLRSATV-RkFmVgfelLgEaQrdIvpeqA avrlr GAL7_ECOLI : 295- 330: qhwql Hahfy-PPlLRSATV-RkFmVgyemLaEtQrdLtaeqA aerlr GAL7_HAEIN : 297- 332: ehwql Hahfy-PPlLRSATV-RkFmVgyemLgEnQrdLtaeqA aerlr GAL7_HUMAN : 319- 354: nhwql Hahyy-PPlLRSATV-RkFmVgyemLaQaQrdLtpeqA aerlr GAL7_KLULA : 311- 346: kaawf Hmhfy-PPlLRSATV-RkFlVgfelLgQpQrdLtaeqA adrlk GAL7_MOUSE : 299- 334: dhwql Hahyy-PPlLRSATV-RkFmVgpctLaAhAhyLppllG satvy GAL7_RAT : 319- 354: dhwql Hahyy-PPlLRSATV-RkFmVgyemLaQaQrdLtpeqA aerlr GAL7_SALTY : 296- 331: ahwql Hahfy-PPlLRSATV-RkFmVgyemLaEtQrdLtaeqA aerlr GAL7_STRLI : 305- 342: ddfal HlnfslPPyVRQAEVpRgLrIrherVhQrDvpPeraaE rlrev GAL7_YEAST : 313- 348: snswf Hmhfy-PPlLRSATV-RkFlVgfelLgEpQrdLtseqA aeklr G 7: 54.4442 10( 10) P-P-x-[LV]-R-[QS]-A-[ET]-V-x(0,1)-R-x-[FL]-x-[IV]-x(4)-[LV]-x-[AEQ]-x-[ADQ]-x(2)-[ILP]-x(4)-[AEG] Occurences: 10(10) GAL7_CRYNE : 328- 358: hfhfy PPlLRSATV-RkFmVgfelLgEaQrdIvpeqA avrlr GAL7_ECOLI : 300- 330: hahfy PPlLRSATV-RkFmVgyemLaEtQrdLtaeqA aerlr GAL7_HAEIN : 302- 332: hahfy PPlLRSATV-RkFmVgyemLgEnQrdLtaeqA aerlr GAL7_HUMAN : 324- 354: hahyy PPlLRSATV-RkFmVgyemLaQaQrdLtpeqA aerlr GAL7_KLULA : 316- 346: hmhfy PPlLRSATV-RkFlVgfelLgQpQrdLtaeqA adrlk GAL7_MOUSE : 304- 334: hahyy PPlLRSATV-RkFmVgpctLaAhAhyLppllG satvy GAL7_RAT : 324- 354: hahyy PPlLRSATV-RkFmVgyemLaQaQrdLtpeqA aerlr GAL7_SALTY : 301- 331: hahfy PPlLRSATV-RkFmVgyemLaEtQrdLtaeqA aerlr GAL7_STRLI : 311- 342: lnfsl PPyVRQAEVpRgLrIrherVhQrDvpPeraaE rlrev GAL7_YEAST : 318- 348: hmhfy PPlLRSATV-RkFlVgfelLgEpQrdLtseqA aeklr H 8: 52.0856 10( 10) Y-[LP]-[EP]-L-L-R-x(3,4)-R-x-F-x(2)-G-x(4)-[AGP]-x(2)-[AQ]-x(4)-[APS]-x(2)-[AG]-[AQS]-x(2)-[FLV] Occurences: 10(10) GAL7_CRYNE : 327- 362: vhfhf YPPLLRsatvRkFmvGfellGeaQrdivPeqAAvrL reslp GAL7_ECOLI : 299- 334: lhahf YPPLLRsatvRkFmvGyemlAetQrdltAeqAAerL ravsd GAL7_HAEIN : 301- 336: lhahf YPPLLRsatvRkFmvGyemlGenQrdltAeqAAerL ralse GAL7_HUMAN : 323- 358: lhahy YPPLLRsatvRkFmvGyemlAqaQrdltPeqAAerL ralpe GAL7_KLULA : 315- 350: fhmhf YPPLLRsatvRkFlvGfellGqpQrdltAeqAAdrL kalsg GAL7_MOUSE : 303- 338: lhahy YPPLLRsatvRkFmvGpctlAahAhylpPllGSatV yemla GAL7_RAT : 323- 358: lhahy YPPLLRsatvRkFmvGyemlAqaQrdltPeqAAerL rvlpe GAL7_SALTY : 300- 335: lhahf YPPLLRsatvRkFmvGyemlAetQrdltAeqAAerL ravsd GAL7_STRLI : 260- 294: efpkv YLELLRrfd-RiFgeGepptPyiAawhqApfGQleF egvtr GAL7_YEAST : 317- 352: fhmhf YPPLLRsatvRkFlvGfellGepQrdltSeqAAekL rnldg I 9: 50.0095 10( 10) P-x(1,3)-L-x(0,1)-L-R-S-[AL]-[AT]-[AV]-[HR]-K-x(2)-[TV]-G-x(3)-L-x-[ADEQ] Occurences: 10(10) GAL7_CRYNE : 328- 348: hfhfy Pp--L-LRSATVRKfmVGfelLgE aqrdi GAL7_ECOLI : 300- 320: hahfy Pp--L-LRSATVRKfmVGyemLaE tqrdl GAL7_HAEIN : 302- 322: hahfy Pp--L-LRSATVRKfmVGyemLgE nqrdl GAL7_HUMAN : 324- 344: hahyy Pp--L-LRSATVRKfmVGyemLaQ aqrdl GAL7_KLULA : 316- 336: hmhfy Pp--L-LRSATVRKflVGfelLgQ pqrdl GAL7_MOUSE : 304- 324: hahyy Pp--L-LRSATVRKfmVGpctLaA hahyl GAL7_RAT : 324- 344: hahyy Pp--L-LRSATVRKfmVGyemLaQ aqrdl GAL7_SALTY : 301- 321: hahfy Pp--L-LRSATVRKfmVGyemLaE tqrdl GAL7_STRLI : 178- 201: ypftt PrtaLmLRSLAAHKdaTGggnLfD svlee GAL7_YEAST : 318- 338: hmhfy Pp--L-LRSATVRKflVGfelLgE pqrdl J 10: 48.7820 10( 10) P-L-L-x(1,2)-S-A-[PT]-[SV]-R-x(4)-G-x(4)-[AGP]-x(2)-[ADQ]-x(2)-[ILP]-x(4)-[AG]-x(3)-[ALV] Occurences: 10(10) GAL7_CRYNE : 329- 362: fhfyp PLLr-SATVRkfmvGfellGeaQrdIvpeqAavrL reslp GAL7_ECOLI : 301- 334: ahfyp PLLr-SATVRkfmvGyemlAetQrdLtaeqAaerL ravsd GAL7_HAEIN : 303- 336: ahfyp PLLr-SATVRkfmvGyemlGenQrdLtaeqAaerL ralse GAL7_HUMAN : 325- 358: ahyyp PLLr-SATVRkfmvGyemlAqaQrdLtpeqAaerL ralpe GAL7_KLULA : 317- 350: mhfyp PLLr-SATVRkflvGfellGqpQrdLtaeqAadrL kalsg GAL7_MOUSE : 305- 338: ahyyp PLLr-SATVRkfmvGpctlAahAhyLppllGsatV yemla GAL7_RAT : 325- 358: ahyyp PLLr-SATVRkfmvGyemlAqaQrdLtpeqAaerL rvlpe GAL7_SALTY : 302- 335: ahfyp PLLr-SATVRkfmvGyemlAetQrdLtaeqAaerL ravsd GAL7_STRLI : 46- 80: evrrd PLLgdSAPSRlapqGrtyhPpaDqcPlcpsGrgtA erdpa GAL7_YEAST : 319- 352: mhfyp PLLr-SATVRkflvGfellGepQrdLtseqAaekL rnldg K 11: 48.2820 19( 10) P-x(0,1)-L-L-x(1,2)-S-A-[PT]-[SV]-R-x(4)-G-x(4)-[AGP]-x(2)-[ADQ]-x(2)-[ILP]-x(4)-[AG]-x(3)-[ALV] Occurences: 19(10) GAL7_CRYNE : 328- 362: hfhfy PpLLr-SATVRkfmvGfellGeaQrdIvpeqAavrL reslp GAL7_CRYNE : 329- 362: fhfyp P-LLr-SATVRkfmvGfellGeaQrdIvpeqAavrL reslp GAL7_ECOLI : 300- 334: hahfy PpLLr-SATVRkfmvGyemlAetQrdLtaeqAaerL ravsd GAL7_ECOLI : 301- 334: ahfyp P-LLr-SATVRkfmvGyemlAetQrdLtaeqAaerL ravsd GAL7_HAEIN : 302- 336: hahfy PpLLr-SATVRkfmvGyemlGenQrdLtaeqAaerL ralse GAL7_HAEIN : 303- 336: ahfyp P-LLr-SATVRkfmvGyemlGenQrdLtaeqAaerL ralse GAL7_HUMAN : 324- 358: hahyy PpLLr-SATVRkfmvGyemlAqaQrdLtpeqAaerL ralpe GAL7_HUMAN : 325- 358: ahyyp P-LLr-SATVRkfmvGyemlAqaQrdLtpeqAaerL ralpe GAL7_KLULA : 316- 350: hmhfy PpLLr-SATVRkflvGfellGqpQrdLtaeqAadrL kalsg GAL7_KLULA : 317- 350: mhfyp P-LLr-SATVRkflvGfellGqpQrdLtaeqAadrL kalsg GAL7_MOUSE : 304- 338: hahyy PpLLr-SATVRkfmvGpctlAahAhyLppllGsatV yemla GAL7_MOUSE : 305- 338: ahyyp P-LLr-SATVRkfmvGpctlAahAhyLppllGsatV yemla GAL7_RAT : 324- 358: hahyy PpLLr-SATVRkfmvGyemlAqaQrdLtpeqAaerL rvlpe GAL7_RAT : 325- 358: ahyyp P-LLr-SATVRkfmvGyemlAqaQrdLtpeqAaerL rvlpe GAL7_SALTY : 301- 335: hahfy PpLLr-SATVRkfmvGyemlAetQrdLtaeqAaerL ravsd GAL7_SALTY : 302- 335: ahfyp P-LLr-SATVRkfmvGyemlAetQrdLtaeqAaerL ravsd GAL7_STRLI : 46- 80: evrrd P-LLgdSAPSRlapqGrtyhPpaDqcPlcpsGrgtA erdpa GAL7_YEAST : 318- 352: hmhfy PpLLr-SATVRkflvGfellGepQrdLtseqAaekL rnldg GAL7_YEAST : 319- 352: mhfyp P-LLr-SATVRkflvGfellGepQrdLtseqAaekL rnldg L 12: 47.9518 10( 10) E-x(1,3)-Q-x(0,2)-R-D-[ILV]-[PTV]-[APS]-E-[QR]-A-[AP]-x-[KR]-L-[KR] Occurences: 10(10) GAL7_CRYNE : 348- 363: fellg Ea--Q--RDIVPEQAAvRLR eslph GAL7_ECOLI : 320- 335: yemla Et--Q--RDLTAEQAAeRLR avsdi GAL7_HAEIN : 322- 337: yemlg En--Q--RDLTAEQAAeRLR alsev GAL7_HUMAN : 340- 359: fmvgy EmlaQaqRDLTPEQAAeRLR alpev GAL7_KLULA : 332- 351: flvgf EllgQpqRDLTAEQAAdRLK alsge GAL7_MOUSE : 340- 359: satvy EmlaQaqRDLTPEQAPeRLR alpev GAL7_RAT : 340- 359: fmvgy EmlaQaqRDLTPEQAAeRLR vlpev GAL7_SALTY : 321- 336: yemla Et--Q--RDLTAEQAAeRLR avsdi GAL7_STRLI : 328- 345: lrirh ErvhQ--RDVPPERAAeRLR evadv GAL7_YEAST : 338- 353: fellg Ep--Q--RDLTSEQAAeKLR nldgq M 13: 46.8394 10( 10) L-x(0,1)-L-R-S-[AL]-[AT]-[AV]-[HR]-K-x(2)-[TV]-G-x(3)-L-x-[ADEQ] Occurences: 10(10) GAL7_CRYNE : 330- 348: hfypp L-LRSATVRKfmVGfelLgE aqrdi GAL7_ECOLI : 302- 320: hfypp L-LRSATVRKfmVGyemLaE tqrdl GAL7_HAEIN : 304- 322: hfypp L-LRSATVRKfmVGyemLgE nqrdl GAL7_HUMAN : 326- 344: hyypp L-LRSATVRKfmVGyemLaQ aqrdl GAL7_KLULA : 318- 336: hfypp L-LRSATVRKflVGfelLgQ pqrdl GAL7_MOUSE : 306- 324: hyypp L-LRSATVRKfmVGpctLaA hahyl GAL7_RAT : 326- 344: hyypp L-LRSATVRKfmVGyemLaQ aqrdl GAL7_SALTY : 303- 321: hfypp L-LRSATVRKfmVGyemLaE tqrdl GAL7_STRLI : 182- 201: tprta LmLRSLAAHKdaTGggnLfD svlee GAL7_YEAST : 320- 338: hfypp L-LRSATVRKflVGfelLgE pqrdl N 14: 44.6639 10( 10) Y-x(2,3)-L-R-[DS]-[AD]-T-V-R-x(2,3)-V-[DG]-x(3)-L-[AEG] Occurences: 10(10) GAL7_CRYNE : 327- 347: vhfhf YpplLRSATVRkfmVGfelLG eaqrd GAL7_ECOLI : 299- 319: lhahf YpplLRSATVRkfmVGyemLA etqrd GAL7_HAEIN : 301- 321: lhahf YpplLRSATVRkfmVGyemLG enqrd GAL7_HUMAN : 323- 343: lhahy YpplLRSATVRkfmVGyemLA qaqrd GAL7_KLULA : 315- 335: fhmhf YpplLRSATVRkflVGfelLG qpqrd GAL7_MOUSE : 303- 323: lhahy YpplLRSATVRkfmVGpctLA ahahy GAL7_RAT : 323- 343: lhahy YpplLRSATVRkfmVGyemLA qaqrd GAL7_SALTY : 300- 320: lhahf YpplLRSATVRkfmVGyemLA etqrd GAL7_STRLI : 16- 34: grelv Yyd-LRDDTVRda-VDrrpLE rtvtt GAL7_YEAST : 317- 337: fhmhf YpplLRSATVRkflVGfelLG epqrd O 15: 43.1755 10( 10) H-x-[HR]-x(2)-P-P-x(1,2)-R-[AS]-A-x(2,3)-R-[EK]-[FV]-x-[DV]-[GV] Occurences: 10(10) GAL7_CRYNE : 323- 342: nsaqv HfHfyPPllRSAtv-RKFmVG fellg GAL7_ECOLI : 295- 314: qhwql HaHfyPPllRSAtv-RKFmVG yemla GAL7_HAEIN : 297- 316: ehwql HaHfyPPllRSAtv-RKFmVG yemlg GAL7_HUMAN : 319- 338: nhwql HaHyyPPllRSAtv-RKFmVG yemla GAL7_KLULA : 311- 330: kaawf HmHfyPPllRSAtv-RKFlVG fellg GAL7_MOUSE : 299- 318: dhwql HaHyyPPllRSAtv-RKFmVG pctla GAL7_RAT : 319- 338: dhwql HaHyyPPllRSAtv-RKFmVG yemla GAL7_SALTY : 296- 315: ahwql HaHfyPPllRSAtv-RKFmVG yemla GAL7_STRLI : 331- 350: rherv HqRdvPPe-RAAerlREVaDV here GAL7_YEAST : 313- 332: snswf HmHfyPPllRSAtv-RKFlVG fellg P 16: 41.5280 10( 10) L-L-R-x(3,4)-R-x-F-x(2)-G-x(4)-[AGP]-x(2)-[AQ]-x(4)-[APS]-x(2)-[AG]-[AQS]-x(2)-[FLV] Occurences: 10(10) GAL7_CRYNE : 330- 362: hfypp LLRsatvRkFmvGfellGeaQrdivPeqAAvrL reslp GAL7_ECOLI : 302- 334: hfypp LLRsatvRkFmvGyemlAetQrdltAeqAAerL ravsd GAL7_HAEIN : 304- 336: hfypp LLRsatvRkFmvGyemlGenQrdltAeqAAerL ralse GAL7_HUMAN : 326- 358: hyypp LLRsatvRkFmvGyemlAqaQrdltPeqAAerL ralpe GAL7_KLULA : 318- 350: hfypp LLRsatvRkFlvGfellGqpQrdltAeqAAdrL kalsg GAL7_MOUSE : 306- 338: hyypp LLRsatvRkFmvGpctlAahAhylpPllGSatV yemla GAL7_RAT : 326- 358: hyypp LLRsatvRkFmvGyemlAqaQrdltPeqAAerL rvlpe GAL7_SALTY : 303- 335: hfypp LLRsatvRkFmvGyemlAetQrdltAeqAAerL ravsd GAL7_STRLI : 263- 294: kvyle LLRrfd-RiFgeGepptPyiAawhqApfGQleF egvtr GAL7_YEAST : 320- 352: hfypp LLRsatvRkFlvGfellGepQrdltSeqAAekL rnldg Q 17: 41.3858 10( 10) Q-R-D-[ILV]-[PTV]-[APS]-E-[QR]-A-x(2,4)-R-x(0,1)-L-[DKR] Occurences: 10(10) GAL7_CRYNE : 350- 363: llgea QRDIVPEQAav--R-LR eslph GAL7_ECOLI : 322- 335: mlaet QRDLTAEQAae--R-LR avsdi GAL7_HAEIN : 324- 337: mlgen QRDLTAEQAae--R-LR alsev GAL7_HUMAN : 346- 359: mlaqa QRDLTPEQAae--R-LR alpev GAL7_KLULA : 338- 351: llgqp QRDLTAEQAad--R-LK alsge GAL7_MOUSE : 346- 359: mlaqa QRDLTPEQApe--R-LR alpev GAL7_RAT : 346- 359: mlaqa QRDLTPEQAae--R-LR vlpev GAL7_SALTY : 323- 336: mlaet QRDLTAEQAae--R-LR avsdi GAL7_STRLI : 332- 345: hervh QRDVPPERAae--R-LR evadv GAL7_YEAST : 340- 356: llgep QRDLTSEQAaeklRnLD gqihy R 18: 36.8238 10( 10) R-[DS]-[AD]-T-V-R-x(2,3)-V-[DG]-x(3)-L-[AEG] Occurences: 10(10) GAL7_CRYNE : 332- 347: yppll RSATVRkfmVGfelLG eaqrd GAL7_ECOLI : 304- 319: yppll RSATVRkfmVGyemLA etqrd GAL7_HAEIN : 306- 321: yppll RSATVRkfmVGyemLG enqrd GAL7_HUMAN : 328- 343: yppll RSATVRkfmVGyemLA qaqrd GAL7_KLULA : 320- 335: yppll RSATVRkflVGfelLG qpqrd GAL7_MOUSE : 308- 323: yppll RSATVRkfmVGpctLA ahahy GAL7_RAT : 328- 343: yppll RSATVRkfmVGyemLA qaqrd GAL7_SALTY : 305- 320: yppll RSATVRkfmVGyemLA etqrd GAL7_STRLI : 20- 34: vyydl RDDTVRda-VDrrpLE rtvtt GAL7_YEAST : 322- 337: yppll RSATVRkflVGfelLG epqrd S 19: 34.6242 10( 10) Y-x(2,3)-L-R-[DS]-[AD]-T-V-R-x(2,3)-V Occurences: 10(10) GAL7_CRYNE : 327- 341: vhfhf YpplLRSATVRkfmV gfell GAL7_ECOLI : 299- 313: lhahf YpplLRSATVRkfmV gyeml GAL7_HAEIN : 301- 315: lhahf YpplLRSATVRkfmV gyeml GAL7_HUMAN : 323- 337: lhahy YpplLRSATVRkfmV gyeml GAL7_KLULA : 315- 329: fhmhf YpplLRSATVRkflV gfell GAL7_MOUSE : 303- 317: lhahy YpplLRSATVRkfmV gpctl GAL7_RAT : 323- 337: lhahy YpplLRSATVRkfmV gyeml GAL7_SALTY : 300- 314: lhahf YpplLRSATVRkfmV gyeml GAL7_STRLI : 16- 28: grelv Yyd-LRDDTVRda-V drrpl GAL7_YEAST : 317- 331: fhmhf YpplLRSATVRkflV gfell T 20: 33.6085 10( 10) L-R-S-x(0,1)-A-x(2,3)-K-x(2)-[TV]-G-x(3)-L-x-[ADEQ] Occurences: 10(10) GAL7_CRYNE : 331- 348: fyppl LRS-AtvrKfmVGfelLgE aqrdi GAL7_ECOLI : 303- 320: fyppl LRS-AtvrKfmVGyemLaE tqrdl GAL7_HAEIN : 305- 322: fyppl LRS-AtvrKfmVGyemLgE nqrdl GAL7_HUMAN : 327- 344: yyppl LRS-AtvrKfmVGyemLaQ aqrdl GAL7_KLULA : 319- 336: fyppl LRS-AtvrKflVGfelLgQ pqrdl GAL7_MOUSE : 307- 324: yyppl LRS-AtvrKfmVGpctLaA hahyl GAL7_RAT : 327- 344: yyppl LRS-AtvrKfmVGyemLaQ aqrdl GAL7_SALTY : 304- 321: fyppl LRS-AtvrKfmVGyemLaE tqrdl GAL7_STRLI : 184- 201: rtalm LRSlAah-KdaTGggnLfD svlee GAL7_YEAST : 321- 338: fyppl LRS-AtvrKflVGfelLgE pqrdl Number of patterns evaluated by Pratt:8940 Total running time: 6 seconds