------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file GALACTOKINASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename GALACTOKINASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: GAL1_BACSU 390 GAL1_ECOLI 381 GAL1_HAEIN 384 GAL1_KLULA 503 GAL1_LACHE 388 GAL1_SALTY 380 GAL1_STRLI 397 GAL1_YEAST 527 GAL2_HUMAN 458 GAL3_YEAST 425 Pratt run started at Thu Feb 6 19:31:09 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 49.5406 10( 10) G-R-x-N-x-I-G-E-H-x-D-Y-x(4)-V-x-P-x(0,1)-A 2: 45.3706 10( 10) R-x-N-x-I-G-E-H-x-D-Y-x(4)-V-x-P-x(0,1)-A 3: 41.2005 10( 10) N-x-I-G-E-H-x-D-Y-x(4)-V-x-P-x(0,1)-A 4: 37.0305 10( 10) I-G-E-H-x-D-Y-x(4)-V-x-P-x(0,1)-A 5: 32.8604 10( 10) G-E-H-x-D-Y-x(4)-V-x-P-x(0,1)-A 6: 28.6904 10( 10) E-H-x-D-Y-x(4)-V-x-P-x(0,1)-A 7: 24.5203 10( 10) H-x-D-Y-x(4)-V-x-P-x(0,1)-A 8: 24.0203 10( 10) P-x(3)-G-L-S-S-x(0,2)-A 9: 24.0203 11( 10) R-x-N-x(2)-G-x(2,3)-D-x(5)-V-x(0,1)-P 10: 20.3503 10( 10) D-Y-x(4)-V-x-P-x(0,1)-A 11: 19.8503 10( 10) G-L-S-S-x(0,2)-A 12: 19.8503 11( 10) N-x(2)-G-x(2,3)-D-x(5)-V-x(0,1)-P 13: 18.8503 20( 10) G-x(0,2)-L-S-S-x(0,2)-A 14: 18.8503 11( 10) P-x(1,3)-G-x(0,2)-L-S-S 15: 16.1802 11( 10) R-x(2,3)-H-x(3)-E-x(2)-R 16: 16.1802 10( 10) Y-x(4)-V-x-P-x(0,1)-A 17: 15.6802 10( 10) G-x(2,3)-G-x(0,1)-R-x(4)-G 18: 15.6802 14( 10) R-x(0,2)-H-x(3)-E-x(2)-R 19: 15.6802 10( 10) L-S-S-x(0,2)-A 20: 15.6802 10( 10) L-x(0,1)-S-S-x(0,1)-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 63.1758 10( 10) G-R-x-N-[ILV]-I-G-E-H-x-D-Y-[CN]-[DGQ]-x(2)-V-[FLM]-P-x(0,1)-A-[ILPV] B 2: 59.0058 10( 10) R-x-N-[ILV]-I-G-E-H-x-D-Y-[CN]-[DGQ]-x(2)-V-[FLM]-P-x(0,1)-A-[ILPV] C 3: 54.8357 10( 10) N-[ILV]-I-G-E-H-x-D-Y-[CN]-[DGQ]-x(2)-V-[FLM]-P-x(0,1)-A-[ILPV] D 4: 53.6537 10( 10) R-x-N-[ILV]-I-G-x(2,3)-D-Y-[CN]-[DGQ]-x(2)-V-x(0,1)-P-x-[AP]-[ILV]-[DENPST]-x-[DGQ]-x(3)-[ASV] E 5: 49.4837 10( 10) N-[ILV]-I-G-x(2,3)-D-Y-[CN]-[DGQ]-x(2)-V-x(0,1)-P-x-[AP]-[ILV]-[DENPST]-x-[DGQ]-x(3)-[ASV] F 6: 48.0038 10( 10) I-G-E-H-x-D-Y-[CN]-[DGQ]-x(2)-V-[FLM]-P-x(0,1)-A-[ILPV] G 7: 43.8338 10( 10) G-E-H-x-D-Y-[CN]-[DGQ]-x(2)-V-[FLM]-P-x(0,1)-A-[ILPV] H 8: 39.6637 10( 10) E-H-x-D-Y-[CN]-[DGQ]-x(2)-V-[FLM]-P-x(0,1)-A-[ILPV] I 9: 35.4937 10( 10) H-x-D-Y-[CN]-[DGQ]-x(2)-V-[FLM]-P-x(0,1)-A-[ILPV] J 10: 34.2581 10( 10) P-x-[GS]-[AGS]-G-L-S-S-x(0,2)-A-x(4)-[AGLPV]-x-[AGL] K 11: 31.3236 10( 10) D-Y-[CN]-[DGQ]-x(2)-V-[FLM]-P-x(0,1)-A-[ILPV] L 12: 27.1536 10( 10) Y-[CN]-[DGQ]-x(2)-V-[FLM]-P-x(0,1)-A-[ILPV] M 13: 24.6337 11( 10) P-x(1,3)-G-x(0,2)-L-S-S-[AS]-x-[AST] N 14: 24.3142 10( 10) G-L-S-S-x(0,2)-A-x(4)-[AGLPV]-x-[AGL] O 15: 24.1771 10( 10) G-x(2,3)-G-x(0,1)-R-x(2)-[GL]-[AGI]-G-x(3)-[CDS] P 16: 24.0121 0( 0) R-x-N-[ILV]-I-G-x(2)-D Q 17: 23.6887 11( 10) R-x(2,3)-H-[AIV]-x(2)-E-[ADNS]-x-R-[ATV] R 18: 23.3142 20( 10) G-x(0,2)-L-S-S-x(0,2)-A-x(4)-[AGLPV]-x-[AGL] S 19: 23.1887 14( 10) R-x(0,2)-H-[AIV]-x(2)-E-[ADNS]-x-R-[ATV] T 20: 20.1441 10( 10) L-S-S-x(0,2)-A-x(4)-[AGLPV]-x-[AGL] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 63.1758 10( 10) G-R-x-N-[ILV]-I-G-E-H-x-D-Y-[CN]-[DGQ]-x(2)-V-[FLM]-P-x(0,1)-A-[ILPV] Occurences: 10(10) GAL1_BACSU : 26- 47: fffap GRvNLIGEHtDYNGghVFPcAL tmgty GAL1_ECOLI : 26- 47: tiqap GRvNLIGEHtDYNDgfVLPcAI dyqtv GAL1_HAEIN : 27- 48: tvyap GRvNIIGEHtDYNDgfVMPcAI nfgta GAL1_KLULA : 42- 63: itrsp GRvNLIGEHiDYCQfsVLPmAI endlm GAL1_LACHE : 26- 46: vffsp GRiNVIGEHtDYNGghVFP-AP islgv GAL1_SALTY : 27- 48: tiqap GRvNLIGEHtDYNDgfVLPcAI dyqtv GAL1_STRLI : 29- 50: cgrra GReNLIGEHtDYNDgfVMPsAL phqva GAL1_YEAST : 51- 72: varsp GRvNLIGEHiDYCDfsVLPlAI dfdml GAL2_HUMAN : 42- 63: yvrap GRvNIIGEHiDYCGysVLPmAV eqdvl GAL3_YEAST : 46- 67: slgll GRvNLIGEHiDYCDfsVLPlAI dvdml B 2: 59.0058 10( 10) R-x-N-[ILV]-I-G-E-H-x-D-Y-[CN]-[DGQ]-x(2)-V-[FLM]-P-x(0,1)-A-[ILPV] Occurences: 10(10) GAL1_BACSU : 27- 47: ffapg RvNLIGEHtDYNGghVFPcAL tmgty GAL1_ECOLI : 27- 47: iqapg RvNLIGEHtDYNDgfVLPcAI dyqtv GAL1_HAEIN : 28- 48: vyapg RvNIIGEHtDYNDgfVMPcAI nfgta GAL1_KLULA : 43- 63: trspg RvNLIGEHiDYCQfsVLPmAI endlm GAL1_LACHE : 27- 46: ffspg RiNVIGEHtDYNGghVFP-AP islgv GAL1_SALTY : 28- 48: iqapg RvNLIGEHtDYNDgfVLPcAI dyqtv GAL1_STRLI : 30- 50: grrag ReNLIGEHtDYNDgfVMPsAL phqva GAL1_YEAST : 52- 72: arspg RvNLIGEHiDYCDfsVLPlAI dfdml GAL2_HUMAN : 43- 63: vrapg RvNIIGEHiDYCGysVLPmAV eqdvl GAL3_YEAST : 47- 67: lgllg RvNLIGEHiDYCDfsVLPlAI dvdml C 3: 54.8357 10( 10) N-[ILV]-I-G-E-H-x-D-Y-[CN]-[DGQ]-x(2)-V-[FLM]-P-x(0,1)-A-[ILPV] Occurences: 10(10) GAL1_BACSU : 29- 47: apgrv NLIGEHtDYNGghVFPcAL tmgty GAL1_ECOLI : 29- 47: apgrv NLIGEHtDYNDgfVLPcAI dyqtv GAL1_HAEIN : 30- 48: apgrv NIIGEHtDYNDgfVMPcAI nfgta GAL1_KLULA : 45- 63: spgrv NLIGEHiDYCQfsVLPmAI endlm GAL1_LACHE : 29- 46: spgri NVIGEHtDYNGghVFP-AP islgv GAL1_SALTY : 30- 48: apgrv NLIGEHtDYNDgfVLPcAI dyqtv GAL1_STRLI : 32- 50: ragre NLIGEHtDYNDgfVMPsAL phqva GAL1_YEAST : 54- 72: spgrv NLIGEHiDYCDfsVLPlAI dfdml GAL2_HUMAN : 45- 63: apgrv NIIGEHiDYCGysVLPmAV eqdvl GAL3_YEAST : 49- 67: llgrv NLIGEHiDYCDfsVLPlAI dvdml D 4: 53.6537 10( 10) R-x-N-[ILV]-I-G-x(2,3)-D-Y-[CN]-[DGQ]-x(2)-V-x(0,1)-P-x-[AP]-[ILV]-[DENPST]-x-[DGQ]-x(3)-[ASV] Occurences: 10(10) GAL1_BACSU : 27- 54: ffapg RvNLIGehtDYNGghVfPcALTmGtyaA vaern GAL1_ECOLI : 27- 54: iqapg RvNLIGehtDYNDgfVlPcAIDyQtviS caprd GAL1_HAEIN : 28- 55: vyapg RvNIIGehtDYNDgfVmPcAINfGtavS gtkrd GAL1_KLULA : 43- 70: trspg RvNLIGehiDYCQfsVlPmAIEnDlmlA crlts GAL1_LACHE : 27- 54: ffspg RiNVIGehtDYNGghVfPaPISlGvygV ygprd GAL1_SALTY : 28- 55: iqapg RvNLIGehtDYNDgfVlPcAIDyQtviS caprd GAL1_STRLI : 30- 57: grrag ReNLIGehtDYNDgfVmPsALPhQvaaV srrer GAL1_YEAST : 52- 79: arspg RvNLIGehiDYCDfsVlPlAIDfDmlcA vkvln GAL2_HUMAN : 43- 70: vrapg RvNIIGehiDYCGysVlPmAVEqDvliA vepvk GAL3_YEAST : 47- 74: lgllg RvNLIGehiDYCDfsVlPlAIDvDmlcA vkild E 5: 49.4837 10( 10) N-[ILV]-I-G-x(2,3)-D-Y-[CN]-[DGQ]-x(2)-V-x(0,1)-P-x-[AP]-[ILV]-[DENPST]-x-[DGQ]-x(3)-[ASV] Occurences: 10(10) GAL1_BACSU : 29- 54: apgrv NLIGehtDYNGghVfPcALTmGtyaA vaern GAL1_ECOLI : 29- 54: apgrv NLIGehtDYNDgfVlPcAIDyQtviS caprd GAL1_HAEIN : 30- 55: apgrv NIIGehtDYNDgfVmPcAINfGtavS gtkrd GAL1_KLULA : 45- 70: spgrv NLIGehiDYCQfsVlPmAIEnDlmlA crlts GAL1_LACHE : 29- 54: spgri NVIGehtDYNGghVfPaPISlGvygV ygprd GAL1_SALTY : 30- 55: apgrv NLIGehtDYNDgfVlPcAIDyQtviS caprd GAL1_STRLI : 32- 57: ragre NLIGehtDYNDgfVmPsALPhQvaaV srrer GAL1_YEAST : 54- 79: spgrv NLIGehiDYCDfsVlPlAIDfDmlcA vkvln GAL2_HUMAN : 45- 70: apgrv NIIGehiDYCGysVlPmAVEqDvliA vepvk GAL3_YEAST : 49- 74: llgrv NLIGehiDYCDfsVlPlAIDvDmlcA vkild F 6: 48.0038 10( 10) I-G-E-H-x-D-Y-[CN]-[DGQ]-x(2)-V-[FLM]-P-x(0,1)-A-[ILPV] Occurences: 10(10) GAL1_BACSU : 31- 47: grvnl IGEHtDYNGghVFPcAL tmgty GAL1_ECOLI : 31- 47: grvnl IGEHtDYNDgfVLPcAI dyqtv GAL1_HAEIN : 32- 48: grvni IGEHtDYNDgfVMPcAI nfgta GAL1_KLULA : 47- 63: grvnl IGEHiDYCQfsVLPmAI endlm GAL1_LACHE : 31- 46: grinv IGEHtDYNGghVFP-AP islgv GAL1_SALTY : 32- 48: grvnl IGEHtDYNDgfVLPcAI dyqtv GAL1_STRLI : 34- 50: grenl IGEHtDYNDgfVMPsAL phqva GAL1_YEAST : 56- 72: grvnl IGEHiDYCDfsVLPlAI dfdml GAL2_HUMAN : 47- 63: grvni IGEHiDYCGysVLPmAV eqdvl GAL3_YEAST : 51- 67: grvnl IGEHiDYCDfsVLPlAI dvdml G 7: 43.8338 10( 10) G-E-H-x-D-Y-[CN]-[DGQ]-x(2)-V-[FLM]-P-x(0,1)-A-[ILPV] Occurences: 10(10) GAL1_BACSU : 32- 47: rvnli GEHtDYNGghVFPcAL tmgty GAL1_ECOLI : 32- 47: rvnli GEHtDYNDgfVLPcAI dyqtv GAL1_HAEIN : 33- 48: rvnii GEHtDYNDgfVMPcAI nfgta GAL1_KLULA : 48- 63: rvnli GEHiDYCQfsVLPmAI endlm GAL1_LACHE : 32- 46: rinvi GEHtDYNGghVFP-AP islgv GAL1_SALTY : 33- 48: rvnli GEHtDYNDgfVLPcAI dyqtv GAL1_STRLI : 35- 50: renli GEHtDYNDgfVMPsAL phqva GAL1_YEAST : 57- 72: rvnli GEHiDYCDfsVLPlAI dfdml GAL2_HUMAN : 48- 63: rvnii GEHiDYCGysVLPmAV eqdvl GAL3_YEAST : 52- 67: rvnli GEHiDYCDfsVLPlAI dvdml H 8: 39.6637 10( 10) E-H-x-D-Y-[CN]-[DGQ]-x(2)-V-[FLM]-P-x(0,1)-A-[ILPV] Occurences: 10(10) GAL1_BACSU : 33- 47: vnlig EHtDYNGghVFPcAL tmgty GAL1_ECOLI : 33- 47: vnlig EHtDYNDgfVLPcAI dyqtv GAL1_HAEIN : 34- 48: vniig EHtDYNDgfVMPcAI nfgta GAL1_KLULA : 49- 63: vnlig EHiDYCQfsVLPmAI endlm GAL1_LACHE : 33- 46: invig EHtDYNGghVFP-AP islgv GAL1_SALTY : 34- 48: vnlig EHtDYNDgfVLPcAI dyqtv GAL1_STRLI : 36- 50: enlig EHtDYNDgfVMPsAL phqva GAL1_YEAST : 58- 72: vnlig EHiDYCDfsVLPlAI dfdml GAL2_HUMAN : 49- 63: vniig EHiDYCGysVLPmAV eqdvl GAL3_YEAST : 53- 67: vnlig EHiDYCDfsVLPlAI dvdml I 9: 35.4937 10( 10) H-x-D-Y-[CN]-[DGQ]-x(2)-V-[FLM]-P-x(0,1)-A-[ILPV] Occurences: 10(10) GAL1_BACSU : 34- 47: nlige HtDYNGghVFPcAL tmgty GAL1_ECOLI : 34- 47: nlige HtDYNDgfVLPcAI dyqtv GAL1_HAEIN : 35- 48: niige HtDYNDgfVMPcAI nfgta GAL1_KLULA : 50- 63: nlige HiDYCQfsVLPmAI endlm GAL1_LACHE : 34- 46: nvige HtDYNGghVFP-AP islgv GAL1_SALTY : 35- 48: nlige HtDYNDgfVLPcAI dyqtv GAL1_STRLI : 37- 50: nlige HtDYNDgfVMPsAL phqva GAL1_YEAST : 59- 72: nlige HiDYCDfsVLPlAI dfdml GAL2_HUMAN : 50- 63: niige HiDYCGysVLPmAV eqdvl GAL3_YEAST : 54- 67: nlige HiDYCDfsVLPlAI dvdml J 10: 34.2581 10( 10) P-x-[GS]-[AGS]-G-L-S-S-x(0,2)-A-x(4)-[AGLPV]-x-[AGL] Occurences: 10(10) GAL1_BACSU : 122- 138: fsgni PnGAGLSSs-AsielLmG vvlqs GAL1_ECOLI : 121- 137: isgnv PqGAGLSSs-AslevAvG tvlqq GAL1_HAEIN : 121- 137: isgnv PlSSGLSSs-AalevAvG kfcqq GAL1_KLULA : 151- 168: vkgdi PsGGGLSSsaAficaVsL aiiys GAL1_LACHE : 123- 139: ieanl PsGSGLSSs-AaiemLmG iilkd GAL1_SALTY : 121- 137: visnv PqGAGLSSs-AslevAvG tvfqq GAL1_STRLI : 122- 139: lastv PsGAGLSSsaAlevrPlA mndly GAL1_YEAST : 162- 178: cegdv PtGSGLSSs-AaficAvA lavvk GAL1_YEAST : 162- 179: cegdv PtGSGLSSsaAficaVaL avvka GAL2_HUMAN : 139- 156: vdgni PpSSGLSSssAlvccAgL vtltv GAL3_YEAST : 157- 172: cqsdi PtGGGLSS--AftcaGrL atira K 11: 31.3236 10( 10) D-Y-[CN]-[DGQ]-x(2)-V-[FLM]-P-x(0,1)-A-[ILPV] Occurences: 10(10) GAL1_BACSU : 36- 47: igeht DYNGghVFPcAL tmgty GAL1_ECOLI : 36- 47: igeht DYNDgfVLPcAI dyqtv GAL1_HAEIN : 37- 48: igeht DYNDgfVMPcAI nfgta GAL1_KLULA : 52- 63: igehi DYCQfsVLPmAI endlm GAL1_LACHE : 36- 46: igeht DYNGghVFP-AP islgv GAL1_SALTY : 37- 48: igeht DYNDgfVLPcAI dyqtv GAL1_STRLI : 39- 50: igeht DYNDgfVMPsAL phqva GAL1_YEAST : 61- 72: igehi DYCDfsVLPlAI dfdml GAL2_HUMAN : 52- 63: igehi DYCGysVLPmAV eqdvl GAL3_YEAST : 56- 67: igehi DYCDfsVLPlAI dvdml L 12: 27.1536 10( 10) Y-[CN]-[DGQ]-x(2)-V-[FLM]-P-x(0,1)-A-[ILPV] Occurences: 10(10) GAL1_BACSU : 37- 47: gehtd YNGghVFPcAL tmgty GAL1_ECOLI : 37- 47: gehtd YNDgfVLPcAI dyqtv GAL1_HAEIN : 38- 48: gehtd YNDgfVMPcAI nfgta GAL1_KLULA : 53- 63: gehid YCQfsVLPmAI endlm GAL1_LACHE : 37- 46: gehtd YNGghVFP-AP islgv GAL1_SALTY : 38- 48: gehtd YNDgfVLPcAI dyqtv GAL1_STRLI : 40- 50: gehtd YNDgfVMPsAL phqva GAL1_YEAST : 62- 72: gehid YCDfsVLPlAI dfdml GAL2_HUMAN : 53- 63: gehid YCGysVLPmAV eqdvl GAL3_YEAST : 57- 67: gehid YCDfsVLPlAI dvdml M 13: 24.6337 11( 10) P-x(1,3)-G-x(0,2)-L-S-S-[AS]-x-[AST] Occurences: 11(10) GAL1_BACSU : 122- 132: fsgni PngaG--LSSSaS iellm GAL1_BACSU : 122- 132: fsgni Pn--GagLSSSaS iellm GAL1_ECOLI : 121- 131: isgnv PqgaG--LSSSaS levav GAL1_ECOLI : 121- 131: isgnv Pq--GagLSSSaS levav GAL1_HAEIN : 121- 131: isgnv PlssG--LSSSaA levav GAL1_KLULA : 151- 161: vkgdi PsggG--LSSSaA ficav GAL1_KLULA : 151- 161: vkgdi Psg-Gg-LSSSaA ficav GAL1_KLULA : 151- 161: vkgdi Ps--GggLSSSaA ficav GAL1_LACHE : 123- 133: ieanl PsgsG--LSSSaA iemlm GAL1_LACHE : 123- 133: ieanl Ps--GsgLSSSaA iemlm GAL1_SALTY : 121- 131: visnv PqgaG--LSSSaS levav GAL1_SALTY : 121- 131: visnv Pq--GagLSSSaS levav GAL1_STRLI : 122- 132: lastv PsgaG--LSSSaA levrp GAL1_STRLI : 122- 132: lastv Ps--GagLSSSaA levrp GAL1_YEAST : 162- 172: cegdv PtgsG--LSSSaA ficav GAL1_YEAST : 162- 172: cegdv Pt--GsgLSSSaA ficav GAL2_HUMAN : 139- 149: vdgni PpssG--LSSSsA lvcca GAL2_HUMAN : 140- 149: dgnip Pss-G--LSSSsA lvcca GAL3_YEAST : 157- 167: cqsdi PtggG--LSSAfT cagrl GAL3_YEAST : 157- 167: cqsdi Ptg-Gg-LSSAfT cagrl GAL3_YEAST : 157- 167: cqsdi Pt--GggLSSAfT cagrl N 14: 24.3142 10( 10) G-L-S-S-x(0,2)-A-x(4)-[AGLPV]-x-[AGL] Occurences: 10(10) GAL1_BACSU : 126- 138: ipnga GLSSs-AsielLmG vvlqs GAL1_ECOLI : 125- 137: vpqga GLSSs-AslevAvG tvlqq GAL1_HAEIN : 125- 137: vplss GLSSs-AalevAvG kfcqq GAL1_KLULA : 155- 168: ipsgg GLSSsaAficaVsL aiiys GAL1_LACHE : 127- 139: lpsgs GLSSs-AaiemLmG iilkd GAL1_SALTY : 125- 137: vpqga GLSSs-AslevAvG tvfqq GAL1_STRLI : 126- 139: vpsga GLSSsaAlevrPlA mndly GAL1_YEAST : 166- 178: vptgs GLSSs-AaficAvA lavvk GAL1_YEAST : 166- 179: vptgs GLSSsaAficaVaL avvka GAL2_HUMAN : 143- 156: ippss GLSSssAlvccAgL vtltv GAL3_YEAST : 161- 172: iptgg GLSS--AftcaGrL atira O 15: 24.1771 10( 10) G-x(2,3)-G-x(0,1)-R-x(2)-[GL]-[AGI]-G-x(3)-[CDS] Occurences: 10(10) GAL1_BACSU : 330- 344: awdhe Gvi-GsRmtGAGfggC tisiv GAL1_ECOLI : 323- 338: vkavi GdkgGvRmtGGGfggC ivali GAL1_HAEIN : 326- 341: aqlvi GksgGaRmtGGGfggC ivala GAL1_KLULA : 438- 452: ialkn Gsf-GsRltGAGwggC tvhlc GAL1_LACHE : 331- 345: swkqp Gvl-GaRmiGGGfggS aiaiv GAL1_SALTY : 322- 337: vkati GdrgGvRmtGGGfggC vvali GAL1_STRLI : 25- 39: srrgc GrraG-RenLIGehtD yndgf GAL1_YEAST : 458- 472: ialsn Gsy-GsRltGAGwggC tvhlv GAL2_HUMAN : 393- 407: icrkf Gaq-GsRltGAGwggC tvsmv GAL3_YEAST : 43- 56: lilsl Gll-G-RvnLIGehiD ycdfs P 16: 24.0121 0( 0) R-x-N-[ILV]-I-G-x(2)-D Occurences: 0(0) Q 17: 23.6887 11( 10) R-x(2,3)-H-[AIV]-x(2)-E-[ADNS]-x-R-[ATV] Occurences: 11(10) GAL1_BACSU : 269- 281: netnr RrakHAvyENhRA iktah GAL1_BACSU : 270- 281: etnrr Rak-HAvyENhRA iktah GAL1_ECOLI : 263- 274: pivak Rvr-HIltENaRT veaas GAL1_HAEIN : 266- 277: plaak Rar-HVvtENqRV ldave GAL1_KLULA : 376- 387: lklfq Rak-HVysEAlRV lkalq GAL1_LACHE : 271- 282: eteik Rar-HAvsENqRT lratq GAL1_SALTY : 262- 273: pvvak Rvr-HVlsENaRT veaas GAL1_STRLI : 267- 279: eeevr RlvrHVvtEDeRV ervva GAL1_YEAST : 392- 403: lklyq Rak-HVysESlRV lkavk GAL2_HUMAN : 331- 342: fklyq Rak-HVysEAaRV lqfkk GAL3_YEAST : 388- 399: lklyq Rak-HVysESlRV lkalk R 18: 23.3142 20( 10) G-x(0,2)-L-S-S-x(0,2)-A-x(4)-[AGLPV]-x-[AGL] Occurences: 20(10) GAL1_BACSU : 124- 138: gnipn GagLSSs-AsielLmG vvlqs GAL1_BACSU : 126- 138: ipnga G--LSSs-AsielLmG vvlqs GAL1_ECOLI : 123- 137: gnvpq GagLSSs-AslevAvG tvlqq GAL1_ECOLI : 125- 137: vpqga G--LSSs-AslevAvG tvlqq GAL1_HAEIN : 125- 137: vplss G--LSSs-AalevAvG kfcqq GAL1_KLULA : 153- 168: gdips GggLSSsaAficaVsL aiiys GAL1_KLULA : 154- 168: dipsg Gg-LSSsaAficaVsL aiiys GAL1_KLULA : 155- 168: ipsgg G--LSSsaAficaVsL aiiys GAL1_LACHE : 125- 139: anlps GsgLSSs-AaiemLmG iilkd GAL1_LACHE : 127- 139: lpsgs G--LSSs-AaiemLmG iilkd GAL1_SALTY : 123- 137: snvpq GagLSSs-AslevAvG tvfqq GAL1_SALTY : 125- 137: vpqga G--LSSs-AslevAvG tvfqq GAL1_STRLI : 124- 139: stvps GagLSSsaAlevrPlA mndly GAL1_STRLI : 126- 139: vpsga G--LSSsaAlevrPlA mndly GAL1_YEAST : 164- 178: gdvpt GsgLSSs-AaficAvA lavvk GAL1_YEAST : 164- 179: gdvpt GsgLSSsaAficaVaL avvka GAL1_YEAST : 166- 178: vptgs G--LSSs-AaficAvA lavvk GAL1_YEAST : 166- 179: vptgs G--LSSsaAficaVaL avvka GAL2_HUMAN : 143- 156: ippss G--LSSssAlvccAgL vtltv GAL3_YEAST : 159- 172: sdipt GggLSS--AftcaGrL atira GAL3_YEAST : 160- 172: diptg Gg-LSS--AftcaGrL atira GAL3_YEAST : 161- 172: iptgg G--LSS--AftcaGrL atira S 19: 23.1887 14( 10) R-x(0,2)-H-[AIV]-x(2)-E-[ADNS]-x-R-[ATV] Occurences: 14(10) GAL1_BACSU : 270- 281: etnrr RakHAvyENhRA iktah GAL1_ECOLI : 263- 274: pivak RvrHIltENaRT veaas GAL1_ECOLI : 265- 274: vakrv R--HIltENaRT veaas GAL1_HAEIN : 266- 277: plaak RarHVvtENqRV ldave GAL1_HAEIN : 268- 277: aakra R--HVvtENqRV ldave GAL1_KLULA : 376- 387: lklfq RakHVysEAlRV lkalq GAL1_LACHE : 271- 282: eteik RarHAvsENqRT lratq GAL1_LACHE : 273- 282: eikra R--HAvsENqRT lratq GAL1_SALTY : 262- 273: pvvak RvrHVlsENaRT veaas GAL1_SALTY : 264- 273: vakrv R--HVlsENaRT veaas GAL1_STRLI : 270- 279: vrrlv R--HVvtEDeRV ervva GAL1_YEAST : 392- 403: lklyq RakHVysESlRV lkavk GAL2_HUMAN : 331- 342: fklyq RakHVysEAaRV lqfkk GAL3_YEAST : 388- 399: lklyq RakHVysESlRV lkalk T 20: 20.1441 10( 10) L-S-S-x(0,2)-A-x(4)-[AGLPV]-x-[AGL] Occurences: 10(10) GAL1_BACSU : 127- 138: pngag LSSs-AsielLmG vvlqs GAL1_ECOLI : 126- 137: pqgag LSSs-AslevAvG tvlqq GAL1_HAEIN : 126- 137: plssg LSSs-AalevAvG kfcqq GAL1_KLULA : 156- 168: psggg LSSsaAficaVsL aiiys GAL1_LACHE : 128- 139: psgsg LSSs-AaiemLmG iilkd GAL1_SALTY : 126- 137: pqgag LSSs-AslevAvG tvfqq GAL1_STRLI : 127- 139: psgag LSSsaAlevrPlA mndly GAL1_YEAST : 167- 178: ptgsg LSSs-AaficAvA lavvk GAL1_YEAST : 167- 179: ptgsg LSSsaAficaVaL avvka GAL2_HUMAN : 144- 156: ppssg LSSssAlvccAgL vtltv GAL3_YEAST : 162- 172: ptggg LSS--AftcaGrL atira Number of patterns evaluated by Pratt:7316 Total running time: 6 seconds