------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 16 sequences from file G6P_DEHYDROGENASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 16 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename G6P_DEHYDROGENASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: G6PD_CERCA 526 G6PD_DIDMA 191 G6PD_DROME 523 G6PD_ECOLI 490 G6PD_EMENI 505 G6PD_ERWCH 491 G6PD_HAEIN 494 G6PD_HUMAN 515 G6PD_LEUME 485 G6PD_MOUSE 514 G6PD_PICJA 495 G6PD_RAT 514 G6PD_SOLTU 511 G6PD_SYNP7 524 G6PD_YEAST 504 G6PD_ZYMMO 485 Pratt run started at Thu Feb 6 19:31:03 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.6802 16( 16) D-x(2)-Q-x-H-x(2)-Q 2: 16.6802 16( 16) G-x(2)-G-D-L 3: 15.6802 19( 16) D-x(1,2)-L-x-K-x(1,2)-V 4: 15.1802 19( 16) Y-x-G-x(0,2)-K-x(1,2)-V 5: 15.1802 19( 16) R-x(3,4)-Y-x-G-x(0,2)-K 6: 15.1802 18( 16) G-A-x(0,1)-G-x(3,5)-K 7: 15.1802 16( 16) G-x(0,2)-A-x(0,1)-G-x(2)-A 8: 15.1802 17( 16) G-x(0,2)-A-x(3)-L-x(0,1)-A 9: 12.5102 18( 16) R-x(4)-P-x(5)-G 10: 12.5102 20( 16) R-I-x(3)-L 11: 12.5102 26( 16) E-K-P 12: 12.5102 17( 16) M-E-x-P 13: 12.5102 21( 16) Q-N-x-L 14: 12.5102 16( 16) Q-x-H-x(2)-Q 15: 12.5102 16( 16) G-D-L 16: 12.5102 19( 16) R-x(3)-Y-x-G 17: 12.0102 21( 16) L-x-K-x(1,2)-V 18: 12.0102 26( 16) G-x(2)-G-x(2,3)-A 19: 12.0102 19( 16) Y-x(2)-G-x(2,3)-G 20: 12.0102 18( 16) Y-x(2,3)-G-x-R Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 71.8450 16( 16) D-[IMV]-[FIMV]-Q-[NS]-H-x-[LM]-Q-[ILMV]-[FLMV]-[ACGST]-x(2)-[AT]-M-[ES]-x-P-x(4)-[ADPST]-x(2)-[IMV]-R-[ADN]-[AE]-x-[ADNV]-x-[ALV]-x(2)-[ACSV] B 2: 62.5513 16( 16) Q-[NS]-H-x-[LM]-Q-[ILMV]-[FLMV]-[ACGST]-x(2)-[AT]-M-[ES]-x-P-x(4)-[ADPST]-x(2)-[IMV]-R-[ADN]-[AE]-x-[ADNV]-x-[ALV]-x(2)-[ACSV] C 3: 34.5623 16( 16) G-[AGS]-x-G-D-L-[AST]-x-[KR]-x(3)-P-[AST]-[ILV] D 4: 31.6146 16( 16) Q-N-x-L-x(3)-[FLM]-[ACDGST]-x(3)-[FLM]-x(2)-[ILP]-x(4)-[AGPST]-x(4)-[DNQ]-x(2)-[ADV]-x(4)-[ACGSV] E 5: 27.7989 16( 16) G-D-L-[AST]-x-[KR]-x(3)-P-[AST]-[ILV] F 6: 22.1270 18( 16) R-x-[DE]-x-Y-x-G-[DK]-[AE] G 7: 21.6514 18( 16) R-I-x(3)-L-[GL]-[HK]-[EHK] H 8: 20.9191 18( 16) E-K-P-x-[GS]-x-[DNS]-x(2)-[DST] I 9: 20.5486 18( 16) R-x(2)-[GPT]-x-P-[FI]-x(4)-G-x(3)-[ADNP] J 10: 18.4199 16( 16) G-x(0,2)-A-x-[DG]-x-L-x(0,1)-A K 11: 18.3891 19( 16) R-x(3,4)-Y-x-G-x(0,2)-K-x(2)-[NV] L 12: 17.8317 16( 16) G-x(0,2)-A-x(0,1)-G-x(2)-A-[DKR] M 13: 17.0959 17( 16) G-A-x(0,1)-G-x(3,5)-K-x(2)-[AILPV] N 14: 15.6802 19( 16) D-x(1,2)-L-x-K-x(1,2)-V O 15: 15.1802 19( 16) Y-x-G-x(0,2)-K-x(1,2)-V P 16: 14.6352 16( 16) Y-x(2,3)-G-x-R-x-[APT] Q 17: 14.6145 25( 16) G-[AST]-x-G-x(2,3)-A R 18: 12.5102 17( 16) M-E-x-P S 19: 12.5102 19( 16) R-x(3)-Y-x-G T 20: 12.0102 21( 16) L-x-K-x(1,2)-V Best patterns with alignements: fitness hits(seqs) Pattern A 1: 71.8450 16( 16) D-[IMV]-[FIMV]-Q-[NS]-H-x-[LM]-Q-[ILMV]-[FLMV]-[ACGST]-x(2)-[AT]-M-[ES]-x-P-x(4)-[ADPST]-x(2)-[IMV]-R-[ADN]-[AE]-x-[ADNV]-x-[ALV]-x(2)-[ACSV] Occurences: 16(16) G6PD_CERCA : 271- 307: fgiir DVMQNHlLQILSlvAMEkPtscqPddIRDEkVkVlkS ipalt G6PD_DIDMA : 101- 137: tcmsq DVMQNHlLQMLClvAMEkPastnSddVRDEkDeLqeA wrift G6PD_DROME : 262- 298: fgiir DVMQNHlLQILSlvAMEkPvschPddIRDEkVkVlkS iealt G6PD_ECOLI : 234- 270: agqmr DMIQNHlLQILCmiAMSpPsdlsAdsIRDEkVkVpeV ssphr G6PD_EMENI : 244- 280: fgiir DVMQNHlLQVLTllAMErPisfsAedIRDEkVrVlrA mdpiq G6PD_ERWCH : 234- 270: agqmr DMIQNHlLQILTmiAMSpPadlsTdrIRDEkVkVlrS lrrid G6PD_HAEIN : 237- 273: sgamr DMFQNHlLQVLAmvAMEpPaiinAnsMRDEvAkVmhS lrplt G6PD_HUMAN : 258- 294: fgiir DVMQNHlLQMLClvAMEkPastnSddVRDEkVkVlkC isevq G6PD_LEUME : 235- 271: agall DMIQNHtMQIVGwlAMEkPesftDkdIRAAkNaAfnA lkiyd G6PD_MOUSE : 257- 293: fgiir DVMQNHlLQMLClvAMEkPattgSddVRDEkVkVlkC iseve G6PD_PICJA : 236- 272: igiir DVMQNHlLQVLTllTMErPvsfdPeaVRDEkVkVlkA fdkid G6PD_RAT : 257- 293: fgiir DVMQNHlLQMLClvAMEkPastdSddVRDEkVkVlkC iseve G6PD_SOLTU : 265- 301: ygiir DIIQNHlLQVLClvAMEkPvsqkPehIRDEkVkVlqS mlpie G6PD_SYNP7 : 255- 291: agalr DMVQNHlMQLFSltAMEpPnslgAdgIRNEkVkVvqA trlad G6PD_YEAST : 243- 279: igiir DVMQNHlLQIMTllTMErPvsfdPesIRDEkVkVlkA vapid G6PD_ZYMMO : 231- 267: sgslr DMVQSHiLQLVAlvAMEpPahmeAnaVRDEkVkVfrA lrpin B 2: 62.5513 16( 16) Q-[NS]-H-x-[LM]-Q-[ILMV]-[FLMV]-[ACGST]-x(2)-[AT]-M-[ES]-x-P-x(4)-[ADPST]-x(2)-[IMV]-R-[ADN]-[AE]-x-[ADNV]-x-[ALV]-x(2)-[ACSV] Occurences: 16(16) G6PD_CERCA : 274- 307: irdvm QNHlLQILSlvAMEkPtscqPddIRDEkVkVlkS ipalt G6PD_DIDMA : 104- 137: sqdvm QNHlLQMLClvAMEkPastnSddVRDEkDeLqeA wrift G6PD_DROME : 265- 298: irdvm QNHlLQILSlvAMEkPvschPddIRDEkVkVlkS iealt G6PD_ECOLI : 237- 270: mrdmi QNHlLQILCmiAMSpPsdlsAdsIRDEkVkVpeV ssphr G6PD_EMENI : 247- 280: irdvm QNHlLQVLTllAMErPisfsAedIRDEkVrVlrA mdpiq G6PD_ERWCH : 237- 270: mrdmi QNHlLQILTmiAMSpPadlsTdrIRDEkVkVlrS lrrid G6PD_HAEIN : 240- 273: mrdmf QNHlLQVLAmvAMEpPaiinAnsMRDEvAkVmhS lrplt G6PD_HUMAN : 261- 294: irdvm QNHlLQMLClvAMEkPastnSddVRDEkVkVlkC isevq G6PD_LEUME : 238- 271: lldmi QNHtMQIVGwlAMEkPesftDkdIRAAkNaAfnA lkiyd G6PD_MOUSE : 260- 293: irdvm QNHlLQMLClvAMEkPattgSddVRDEkVkVlkC iseve G6PD_PICJA : 239- 272: irdvm QNHlLQVLTllTMErPvsfdPeaVRDEkVkVlkA fdkid G6PD_RAT : 260- 293: irdvm QNHlLQMLClvAMEkPastdSddVRDEkVkVlkC iseve G6PD_SOLTU : 268- 301: irdii QNHlLQVLClvAMEkPvsqkPehIRDEkVkVlqS mlpie G6PD_SYNP7 : 258- 291: lrdmv QNHlMQLFSltAMEpPnslgAdgIRNEkVkVvqA trlad G6PD_YEAST : 246- 279: irdvm QNHlLQIMTllTMErPvsfdPesIRDEkVkVlkA vapid G6PD_ZYMMO : 234- 267: lrdmv QSHiLQLVAlvAMEpPahmeAnaVRDEkVkVfrA lrpin C 3: 34.5623 16( 16) G-[AGS]-x-G-D-L-[AST]-x-[KR]-x(3)-P-[AST]-[ILV] Occurences: 16(16) G6PD_CERCA : 50- 64: tfvif GAsGDLAkKkiyPTL wwlyr G6PD_DIDMA : 38- 52: ifiim GAsGDLAkKkiyPTI epasf G6PD_DROME : 42- 56: tfvif GAsGDLAkKkiyPTL wwlyr G6PD_ECOLI : 16- 30: dlvif GAkGDLArRkllPSL yqlek G6PD_EMENI : 23- 37: vivvl GAsGDLAkKktfPAL fglfr G6PD_ERWCH : 16- 30: dlvif GAkGDLArRkllPSL yqlek G6PD_HAEIN : 12- 26: civif GAsGDLThRkliPAL ynlyk G6PD_HUMAN : 38- 52: ifiim GAsGDLAkKkiyPTI wwlfr G6PD_LEUME : 12- 26: lvtff GGtGDLAkRklyPSV fnlyk G6PD_MOUSE : 37- 51: ifiim GAsGDLAkKkiyPTI wwlfr G6PD_PICJA : 15- 29: tiivf GAsGDLArKktfPAL fglfr G6PD_RAT : 37- 51: ifiim GAsGDLAkKkiyPTI wwlfr G6PD_SOLTU : 36- 50: siivl GAsGDLAkKktfPAL fnlyr G6PD_SYNP7 : 29- 43: ilvif GAtGDLTqRklvPAI yemhl G6PD_YEAST : 17- 31: visvf GAsGDLAkKktfPAL fglfr G6PD_ZYMMO : 12- 26: tmilf GStGDLSqRmllPSL yglda D 4: 31.6146 16( 16) Q-N-x-L-x(3)-[FLM]-[ACDGST]-x(3)-[FLM]-x(2)-[ILP]-x(4)-[AGPST]-x(4)-[DNQ]-x(2)-[ADV]-x(4)-[ACGSV] Occurences: 16(16) G6PD_CERCA : 274- 307: irdvm QNhLlqiLSlvaMekPtscqPddirDekVkvlkS ipalt G6PD_DIDMA : 104- 137: sqdvm QNhLlqmLClvaMekPastnSddvrDekDelqeA wrift G6PD_DROME : 265- 298: irdvm QNhLlqiLSlvaMekPvschPddirDekVkvlkS iealt G6PD_ECOLI : 237- 270: mrdmi QNhLlqiLCmiaMspPsdlsAdsirDekVkvpeV ssphr G6PD_EMENI : 247- 280: irdvm QNhLlqvLTllaMerPisfsAedirDekVrvlrA mdpiq G6PD_ERWCH : 237- 270: mrdmi QNhLlqiLTmiaMspPadlsTdrirDekVkvlrS lrrid G6PD_HAEIN : 240- 273: mrdmf QNhLlqvLAmvaMepPaiinAnsmrDevAkvmhS lrplt G6PD_HUMAN : 261- 294: irdvm QNhLlqmLClvaMekPastnSddvrDekVkvlkC isevq G6PD_LEUME : 161- 194: taael QNdLenaFDdnqLfrIdhylGkemvQniAalrfG npifd G6PD_MOUSE : 260- 293: irdvm QNhLlqmLClvaMekPattgSddvrDekVkvlkC iseve G6PD_PICJA : 239- 272: irdvm QNhLlqvLTlltMerPvsfdPeavrDekVkvlkA fdkid G6PD_RAT : 260- 293: irdvm QNhLlqmLClvaMekPastdSddvrDekVkvlkC iseve G6PD_SOLTU : 268- 301: irdii QNhLlqvLClvaMekPvsqkPehirDekVkvlqS mlpie G6PD_SYNP7 : 258- 291: lrdmv QNhLmqlFSltaMepPnslgAdgirNekVkvvqA trlad G6PD_YEAST : 246- 279: irdvm QNhLlqiMTlltMerPvsfdPesirDekVkvlkA vapid G6PD_ZYMMO : 182- 215: gketv QNlLtlrFGnalFepLwnskGidhvQisVaetvG legri E 5: 27.7989 16( 16) G-D-L-[AST]-x-[KR]-x(3)-P-[AST]-[ILV] Occurences: 16(16) G6PD_CERCA : 53- 64: ifgas GDLAkKkiyPTL wwlyr G6PD_DIDMA : 41- 52: imgas GDLAkKkiyPTI epasf G6PD_DROME : 45- 56: ifgas GDLAkKkiyPTL wwlyr G6PD_ECOLI : 19- 30: ifgak GDLArRkllPSL yqlek G6PD_EMENI : 26- 37: vlgas GDLAkKktfPAL fglfr G6PD_ERWCH : 19- 30: ifgak GDLArRkllPSL yqlek G6PD_HAEIN : 15- 26: ifgas GDLThRkliPAL ynlyk G6PD_HUMAN : 41- 52: imgas GDLAkKkiyPTI wwlfr G6PD_LEUME : 15- 26: ffggt GDLAkRklyPSV fnlyk G6PD_MOUSE : 40- 51: imgas GDLAkKkiyPTI wwlfr G6PD_PICJA : 18- 29: vfgas GDLArKktfPAL fglfr G6PD_RAT : 40- 51: imgas GDLAkKkiyPTI wwlfr G6PD_SOLTU : 39- 50: vlgas GDLAkKktfPAL fnlyr G6PD_SYNP7 : 32- 43: ifgat GDLTqRklvPAI yemhl G6PD_YEAST : 20- 31: vfgas GDLAkKktfPAL fglfr G6PD_ZYMMO : 15- 26: lfgst GDLSqRmllPSL yglda F 6: 22.1270 18( 16) R-x-[DE]-x-Y-x-G-[DK]-[AE] Occurences: 18(16) G6PD_CERCA : 211- 219: edqly RiDhYlGKE mvqnl G6PD_DIDMA : 17- 25: vcgil ReElYqGDA fhqsd G6PD_DROME : 202- 210: edqly RiDhYlGKE mvqkl G6PD_ECOLI : 174- 182: ecqvy RiDhYlGKE tvlnl G6PD_EMENI : 184- 192: eeeif RiDhYlGKE mvkni G6PD_ERWCH : 174- 182: ecqvy RiDhYlGKE tvlnl G6PD_HAEIN : 177- 185: ehqiy RiDhYlGKE tvqnl G6PD_HUMAN : 198- 206: edqiy RiDhYlGKE mvqnl G6PD_LEUME : 175- 183: dnqlf RiDhYlGKE mvqni G6PD_MOUSE : 16- 24: vcgil ReElYqGDA fhqad G6PD_MOUSE : 197- 205: edqiy RiDhYlGKE mvqnl G6PD_PICJA : 176- 184: edevy RiDhYlGKE mvknl G6PD_RAT : 16- 24: vcgil ReElYqGDA fhqad G6PD_RAT : 197- 205: edqiy RiDhYlGKE mvqnl G6PD_SOLTU : 205- 213: epqiy RiDhYlGKE lvqnl G6PD_SYNP7 : 195- 203: esqiy RiDhYlGKE tvqnl G6PD_YEAST : 183- 191: eeely RiDhYlGKE lvknl G6PD_ZYMMO : 171- 179: ekqvy RiDhYlGKE tvqnl G 7: 21.6514 18( 16) R-I-x(3)-L-[GL]-[HK]-[EHK] Occurences: 18(16) G6PD_CERCA : 211- 219: edqly RIdhyLGKE mvqnl G6PD_DIDMA : 139- 147: lqeaw RIftpLLHH ierek G6PD_DROME : 202- 210: edqly RIdhyLGKE mvqkl G6PD_ECOLI : 174- 182: ecqvy RIdhyLGKE tvlnl G6PD_EMENI : 184- 192: eeeif RIdhyLGKE mvkni G6PD_ERWCH : 174- 182: ecqvy RIdhyLGKE tvlnl G6PD_HAEIN : 177- 185: ehqiy RIdhyLGKE tvqnl G6PD_HUMAN : 198- 206: edqiy RIdhyLGKE mvqnl G6PD_LEUME : 175- 183: dnqlf RIdhyLGKE mvqni G6PD_MOUSE : 197- 205: edqiy RIdhyLGKE mvqnl G6PD_MOUSE : 462- 470: lreaw RIftpLLHK idrek G6PD_PICJA : 176- 184: edevy RIdhyLGKE mvknl G6PD_RAT : 197- 205: edqiy RIdhyLGKE mvqnl G6PD_RAT : 462- 470: lreaw RIftpLLHK idrek G6PD_SOLTU : 205- 213: epqiy RIdhyLGKE lvqnl G6PD_SYNP7 : 195- 203: esqiy RIdhyLGKE tvqnl G6PD_YEAST : 183- 191: eeely RIdhyLGKE lvknl G6PD_ZYMMO : 171- 179: ekqvy RIdhyLGKE tvqnl H 8: 20.9191 18( 16) E-K-P-x-[GS]-x-[DNS]-x(2)-[DST] Occurences: 18(16) G6PD_CERCA : 183- 192: nrvii EKPfGrDdvT skkls G6PD_DIDMA : 117- 126: clvam EKPaStNsdD vrdek G6PD_DROME : 174- 183: nrvii EKPfGrDdaS sagls G6PD_ECOLI : 146- 155: arvvm EKPlGtSlaT sqein G6PD_EMENI : 156- 165: ariiv EKPfGkDlqS srdlq G6PD_ERWCH : 146- 155: arvvm EKPlGtNlaS srvin G6PD_HAEIN : 149- 158: kriiv EKPfGyDekT aqtld G6PD_HUMAN : 170- 179: nriiv EKPfGrDlqS sdrls G6PD_HUMAN : 274- 283: clvam EKPaStNsdD vrdek G6PD_LEUME : 147- 156: nrlmi EKPfGtSydT aaelq G6PD_MOUSE : 169- 178: nriiv EKPfGrDlqS snqls G6PD_PICJA : 148- 157: sriii EKPfGrDleT yrelq G6PD_RAT : 169- 178: nriiv EKPfGrDlqS snqls G6PD_RAT : 273- 282: clvam EKPaStDsdD vrdek G6PD_SOLTU : 177- 186: trtvv EKPfGkDlaS seqls G6PD_SYNP7 : 167- 176: trlvv EKPfGrDlsS aqvln G6PD_YEAST : 155- 164: trviv EKPfGhDlaS arelq G6PD_ZYMMO : 143- 152: srlal EKPlGqDlaS sdhin I 9: 20.5486 18( 16) R-x(2)-[GPT]-x-P-[FI]-x(4)-G-x(3)-[ADNP] Occurences: 18(16) G6PD_CERCA : 361- 376: rinne RwdGvPFilrcGkalD erkav G6PD_DIDMA : 150- 165: lhhie RekTqPIpyvyGsrgP peade G6PD_DROME : 353- 368: kinne RwqGvPFilrcGkalN erkae G6PD_ECOLI : 326- 341: didnw RwaGvPFylrtGkrlP tkcse G6PD_EMENI : 331- 346: hikne RwdGvPFimkaGkalP neqkt G6PD_ERWCH : 327- 342: diddw RwsGvPFylrtGkrlP skcse G6PD_HAEIN : 330- 345: eienw RwaGvPFyvrtGkrlP arvte G6PD_HUMAN : 348- 363: yvene RwdGvPFilrcGkalN erkae G6PD_LEUME : 326- 341: qfdlp RweGvPFyvrsGkrlA akqtr G6PD_MOUSE : 347- 362: yvene RwdGvPFilrcGkalN erkae G6PD_MOUSE : 473- 488: lhkid RekPqPIpyvyGsrgP teade G6PD_PICJA : 323- 338: nihne RwdGvPIvlraGkalD egkae G6PD_RAT : 347- 362: yvene RwdGvPFilrcGkalN erkae G6PD_RAT : 473- 488: lhkid RekPqPIpyvyGsrgP teade G6PD_SOLTU : 344- 359: rihne RweGvPFimkaGkalN srkae G6PD_SYNP7 : 348- 363: lvdnw RwqGvPFylrtGkrmP kkvte G6PD_YEAST : 330- 345: niene RweGvPImmraGkalN eskve G6PD_ZYMMO : 322- 337: hvdnw RwqGvPFyirtGkrlP arrse J 10: 18.4199 16( 16) G-x(0,2)-A-x-[DG]-x-L-x(0,1)-A Occurences: 16(16) G6PD_CERCA : 50- 56: tfvif G--AsGdL-A kkkiy G6PD_DIDMA : 38- 44: ifiim G--AsGdL-A kkkiy G6PD_DROME : 42- 48: tfvif G--AsGdL-A kkkiy G6PD_ECOLI : 16- 22: dlvif G--AkGdL-A rrkll G6PD_EMENI : 23- 29: vivvl G--AsGdL-A kkktf G6PD_ERWCH : 16- 22: dlvif G--AkGdL-A rrkll G6PD_HAEIN : 468- 477: eagtw GpvAaDkLiA kqgkv G6PD_HUMAN : 38- 44: ifiim G--AsGdL-A kkkiy G6PD_LEUME : 466- 475: ksgsm GpeAsDkLlA angda G6PD_MOUSE : 37- 43: ifiim G--AsGdL-A kkkiy G6PD_PICJA : 15- 21: tiivf G--AsGdL-A rkktf G6PD_RAT : 37- 43: ifiim G--AsGdL-A kkkiy G6PD_SOLTU : 36- 42: siivl G--AsGdL-A kkktf G6PD_SYNP7 : 151- 157: aakql G--AaGmL-A dpakt G6PD_YEAST : 17- 23: visvf G--AsGdL-A kkktf G6PD_ZYMMO : 28- 36: lpsly GldAdGlL-A ddlri K 11: 18.3891 19( 16) R-x(3,4)-Y-x-G-x(0,2)-K-x(2)-[NV] Occurences: 19(16) G6PD_CERCA : 211- 221: edqly Ridh-YlG--KemV qnlmt G6PD_DIDMA : 174- 187: delmk RvgfqYeGtyKwvN phkl G6PD_DROME : 202- 212: edqly Ridh-YlG--KemV qklmt G6PD_ECOLI : 174- 184: ecqvy Ridh-YlG--KetV lnlla G6PD_EMENI : 184- 194: eeeif Ridh-YlG--KemV knili G6PD_ERWCH : 174- 184: ecqvy Ridh-YlG--KetV lnlla G6PD_HAEIN : 177- 187: ehqiy Ridh-YlG--KetV qnllv G6PD_HUMAN : 198- 208: edqiy Ridh-YlG--KemV qnlmv G6PD_HUMAN : 498- 511: delmk RvgfqYeGtyKwvN phkl G6PD_LEUME : 175- 185: dnqlf Ridh-YlG--KemV qniaa G6PD_MOUSE : 197- 207: edqiy Ridh-YlG--KemV qnlmv G6PD_MOUSE : 497- 510: delmk RvgfqYeGtyKwvN phkl G6PD_PICJA : 176- 186: edevy Ridh-YlG--KemV knllv G6PD_RAT : 197- 207: edqiy Ridh-YlG--KemV qnlmv G6PD_RAT : 497- 510: delmk RvgfqYeGtyKwvN phkl G6PD_SOLTU : 205- 215: epqiy Ridh-YlG--KelV qnllv G6PD_SYNP7 : 195- 205: esqiy Ridh-YlG--KetV qnllv G6PD_YEAST : 183- 193: eeely Ridh-YlG--KelV knllv G6PD_ZYMMO : 171- 181: ekqvy Ridh-YlG--KetV qnllt L 12: 17.8317 16( 16) G-x(0,2)-A-x(0,1)-G-x(2)-A-[DKR] Occurences: 16(16) G6PD_CERCA : 50- 57: tfvif G--AsGdlAK kkiyp G6PD_DIDMA : 38- 45: ifiim G--AsGdlAK kkiyp G6PD_DROME : 42- 49: tfvif G--AsGdlAK kkiyp G6PD_ECOLI : 16- 23: dlvif G--AkGdlAR rkllp G6PD_EMENI : 23- 30: vivvl G--AsGdlAK kktfp G6PD_ERWCH : 16- 23: dlvif G--AkGdlAR rkllp G6PD_HAEIN : 392- 398: glkkp G--A-GfeAK evsmd G6PD_HUMAN : 38- 45: ifiim G--AsGdlAK kkiyp G6PD_LEUME : 290- 296: vraqy G--A-GdsAD fkpyl G6PD_MOUSE : 37- 44: ifiim G--AsGdlAK kkiyp G6PD_PICJA : 15- 22: tiivf G--AsGdlAR kktfp G6PD_RAT : 37- 44: ifiim G--AsGdlAK kkiyp G6PD_SOLTU : 36- 43: siivl G--AsGdlAK kktfp G6PD_SYNP7 : 151- 158: aakql Ga-A-GmlAD paktr G6PD_SYNP7 : 151- 158: aakql G--AaGmlAD paktr G6PD_YEAST : 17- 24: visvf G--AsGdlAK kktfp G6PD_ZYMMO : 28- 37: lpsly GldAdGllAD dlriv M 13: 17.0959 17( 16) G-A-x(0,1)-G-x(3,5)-K-x(2)-[AILPV] Occurences: 17(16) G6PD_CERCA : 50- 60: tfvif GAsGdla--KkkI yptlw G6PD_CERCA : 50- 62: tfvif GAsGdlakkKiyP tlwwl G6PD_DIDMA : 38- 48: ifiim GAsGdla--KkkI yptie G6PD_DIDMA : 38- 50: ifiim GAsGdlakkKiyP tiepa G6PD_DROME : 42- 52: tfvif GAsGdla--KkkI yptlw G6PD_DROME : 42- 54: tfvif GAsGdlakkKiyP tlwwl G6PD_ECOLI : 16- 28: dlvif GAkGdlarrKllP slyql G6PD_EMENI : 23- 35: vivvl GAsGdlakkKtfP alfgl G6PD_ERWCH : 16- 28: dlvif GAkGdlarrKllP slyql G6PD_HAEIN : 12- 24: civif GAsGdlthrKliP alynl G6PD_HUMAN : 38- 48: ifiim GAsGdla--KkkI yptiw G6PD_HUMAN : 38- 50: ifiim GAsGdlakkKiyP tiwwl G6PD_LEUME : 290- 301: vraqy GA-GdsadfKpyL eeldv G6PD_MOUSE : 37- 47: ifiim GAsGdla--KkkI yptiw G6PD_MOUSE : 37- 49: ifiim GAsGdlakkKiyP tiwwl G6PD_PICJA : 15- 27: tiivf GAsGdlarkKtfP alfgl G6PD_RAT : 37- 47: ifiim GAsGdla--KkkI yptiw G6PD_RAT : 37- 49: ifiim GAsGdlakkKiyP tiwwl G6PD_SOLTU : 36- 48: siivl GAsGdlakkKtfP alfnl G6PD_SYNP7 : 29- 41: ilvif GAtGdltqrKlvP aiyem G6PD_SYNP7 : 277- 288: ppnsl GAdGirne-KvkV vqatr G6PD_YEAST : 17- 29: visvf GAsGdlakkKtfP alfgl G6PD_ZYMMO : 286- 296: vtgqy GA-Gvsgg-KevA gyide N 14: 15.6802 19( 16) D-x(1,2)-L-x-K-x(1,2)-V Occurences: 19(16) G6PD_CERCA : 213- 221: qlyri DhyLgKemV qnlmt G6PD_DIDMA : 169- 175: gppea De-LmKr-V gfqye G6PD_DROME : 204- 212: qlyri DhyLgKemV qklmt G6PD_ECOLI : 176- 184: qvyri DhyLgKetV lnlla G6PD_EMENI : 186- 194: eifri DhyLgKemV knili G6PD_ERWCH : 176- 184: qvyri DhyLgKetV lnlla G6PD_HAEIN : 179- 187: qiyri DhyLgKetV qnllv G6PD_HUMAN : 200- 208: qiyri DhyLgKemV qnlmv G6PD_HUMAN : 493- 499: gptea De-LmKr-V gfqye G6PD_LEUME : 177- 185: qlfri DhyLgKemV qniaa G6PD_MOUSE : 199- 207: qiyri DhyLgKemV qnlmv G6PD_MOUSE : 492- 498: gptea De-LmKr-V gfqye G6PD_PICJA : 178- 186: evyri DhyLgKemV knllv G6PD_RAT : 199- 207: qiyri DhyLgKemV qnlmv G6PD_RAT : 492- 498: gptea De-LmKr-V gfqye G6PD_SOLTU : 207- 215: qiyri DhyLgKelV qnllv G6PD_SYNP7 : 197- 205: qiyri DhyLgKetV qnllv G6PD_YEAST : 185- 193: elyri DhyLgKelV knllv G6PD_ZYMMO : 173- 181: qvyri DhyLgKetV qnllt O 15: 15.1802 19( 16) Y-x-G-x(0,2)-K-x(1,2)-V Occurences: 19(16) G6PD_CERCA : 215- 221: yridh YlG--KemV qnlmt G6PD_DIDMA : 179- 186: rvgfq YeGtyKw-V nphkl G6PD_DROME : 206- 212: yridh YlG--KemV qklmt G6PD_ECOLI : 178- 184: yridh YlG--KetV lnlla G6PD_EMENI : 188- 194: fridh YlG--KemV knili G6PD_ERWCH : 178- 184: yridh YlG--KetV lnlla G6PD_HAEIN : 181- 187: yridh YlG--KetV qnllv G6PD_HUMAN : 202- 208: yridh YlG--KemV qnlmv G6PD_HUMAN : 503- 510: rvgfq YeGtyKw-V nphkl G6PD_LEUME : 179- 185: fridh YlG--KemV qniaa G6PD_MOUSE : 201- 207: yridh YlG--KemV qnlmv G6PD_MOUSE : 502- 509: rvgfq YeGtyKw-V nphkl G6PD_PICJA : 180- 186: yridh YlG--KemV knllv G6PD_RAT : 201- 207: yridh YlG--KemV qnlmv G6PD_RAT : 502- 509: rvgfq YeGtyKw-V nphkl G6PD_SOLTU : 209- 215: yridh YlG--KelV qnllv G6PD_SYNP7 : 199- 205: yridh YlG--KetV qnllv G6PD_YEAST : 187- 193: yridh YlG--KelV knllv G6PD_ZYMMO : 175- 181: yridh YlG--KetV qnllt P 16: 14.6352 16( 16) Y-x(2,3)-G-x-R-x-[APT] Occurences: 16(16) G6PD_CERCA : 495- 502: vkpip Yvf-GsRgP keadq G6PD_DIDMA : 158- 165: tqpip Yvy-GsRgP peade G6PD_DROME : 486- 493: irpit Yqy-GsRgP keadr G6PD_ECOLI : 333- 341: agvpf YlrtGkRlP tkcse G6PD_EMENI : 466- 473: iipme Ypy-GsRgP svldd G6PD_ERWCH : 334- 342: sgvpf YlrtGkRlP skcse G6PD_HAEIN : 337- 345: agvpf YvrtGkRlP arvte G6PD_HUMAN : 482- 489: pkpip Yiy-GsRgP teade G6PD_LEUME : 333- 341: egvpf YvrsGkRlA akqtr G6PD_MOUSE : 481- 488: pqpip Yvy-GsRgP teade G6PD_PICJA : 2- 10: s YdsfGdRvT iivfg G6PD_RAT : 481- 488: pqpip Yvy-GsRgP teade G6PD_SOLTU : 479- 486: vkpip Ykp-GsRgP aeade G6PD_SYNP7 : 355- 363: qgvpf YlrtGkRmP kkvte G6PD_YEAST : 464- 471: ptpei Ypy-GsRgP kglke G6PD_ZYMMO : 329- 337: qgvpf YirtGkRlP arrse Q 17: 14.6145 25( 16) G-[AST]-x-G-x(2,3)-A Occurences: 25(16) G6PD_CERCA : 50- 56: tfvif GAsGdl-A kkkiy G6PD_CERCA : 498- 505: ipyvf GSrGpkeA dqkts G6PD_DIDMA : 38- 44: ifiim GAsGdl-A kkkiy G6PD_DIDMA : 161- 168: ipyvy GSrGppeA delmk G6PD_DROME : 42- 48: tfvif GAsGdl-A kkkiy G6PD_DROME : 489- 496: ityqy GSrGpkeA drkce G6PD_ECOLI : 16- 22: dlvif GAkGdl-A rrkll G6PD_ECOLI : 468- 474: kpyqa GTwGpv-A svami G6PD_EMENI : 23- 29: vivvl GAsGdl-A kkktf G6PD_ERWCH : 16- 22: dlvif GAkGdl-A rrkll G6PD_ERWCH : 469- 475: kpyqa GTwGpv-A svami G6PD_HAEIN : 465- 471: heyea GTwGpv-A adkli G6PD_HAEIN : 465- 472: heyea GTwGpvaA dklia G6PD_HUMAN : 38- 44: ifiim GAsGdl-A kkkiy G6PD_HUMAN : 485- 492: ipyiy GSrGpteA delmk G6PD_LEUME : 463- 469: etyks GSmGpe-A sdkll G6PD_MOUSE : 37- 43: ifiim GAsGdl-A kkkiy G6PD_MOUSE : 484- 491: ipyvy GSrGpteA delmk G6PD_PICJA : 15- 21: tiivf GAsGdl-A rkktf G6PD_RAT : 37- 43: ifiim GAsGdl-A kkkiy G6PD_RAT : 484- 491: ipyvy GSrGpteA delmk G6PD_SOLTU : 36- 42: siivl GAsGdl-A kkktf G6PD_SOLTU : 482- 489: ipykp GSrGpaeA dellq G6PD_SYNP7 : 151- 157: aakql GAaGml-A dpakt G6PD_YEAST : 17- 23: visvf GAsGdl-A kkktf G6PD_ZYMMO : 465- 472: ktyvs GTwGpstA ialae R 18: 12.5102 17( 16) M-E-x-P Occurences: 17(16) G6PD_CERCA : 286- 289: lslva MEkP tscqp G6PD_DIDMA : 116- 119: lclva MEkP astns G6PD_DROME : 277- 280: lslva MEkP vschp G6PD_ECOLI : 145- 148: parvv MEkP lgtsl G6PD_EMENI : 259- 262: ltlla MErP isfsa G6PD_EMENI : 464- 467: keiip MEyP ygsrg G6PD_ERWCH : 145- 148: parvv MEkP lgtnl G6PD_HAEIN : 252- 255: lamva MEpP aiina G6PD_HUMAN : 273- 276: lclva MEkP astns G6PD_LEUME : 250- 253: vgwla MEkP esftd G6PD_MOUSE : 272- 275: lclva MEkP attgs G6PD_PICJA : 251- 254: ltllt MErP vsfdp G6PD_RAT : 272- 275: lclva MEkP astds G6PD_SOLTU : 280- 283: lclva MEkP vsqkp G6PD_SYNP7 : 270- 273: fslta MEpP nslga G6PD_YEAST : 258- 261: mtllt MErP vsfdp G6PD_ZYMMO : 246- 249: valva MEpP ahmea S 19: 12.5102 19( 16) R-x(3)-Y-x-G Occurences: 19(16) G6PD_CERCA : 211- 217: edqly RidhYlG kemvq G6PD_DIDMA : 17- 23: vcgil ReelYqG dafhq G6PD_DROME : 202- 208: edqly RidhYlG kemvq G6PD_ECOLI : 174- 180: ecqvy RidhYlG ketvl G6PD_EMENI : 184- 190: eeeif RidhYlG kemvk G6PD_ERWCH : 174- 180: ecqvy RidhYlG ketvl G6PD_HAEIN : 177- 183: ehqiy RidhYlG ketvq G6PD_HAEIN : 225- 231: igvee RggyYdG sgamr G6PD_HUMAN : 198- 204: edqiy RidhYlG kemvq G6PD_LEUME : 175- 181: dnqlf RidhYlG kemvq G6PD_MOUSE : 16- 22: vcgil ReelYqG dafhq G6PD_MOUSE : 197- 203: edqiy RidhYlG kemvq G6PD_PICJA : 176- 182: edevy RidhYlG kemvk G6PD_RAT : 16- 22: vcgil ReelYqG dafhq G6PD_RAT : 197- 203: edqiy RidhYlG kemvq G6PD_SOLTU : 205- 211: epqiy RidhYlG kelvq G6PD_SYNP7 : 195- 201: esqiy RidhYlG ketvq G6PD_YEAST : 183- 189: eeely RidhYlG kelvk G6PD_ZYMMO : 171- 177: ekqvy RidhYlG ketvq T 20: 12.0102 21( 16) L-x-K-x(1,2)-V Occurences: 21(16) G6PD_CERCA : 216- 221: ridhy LgKemV qnlmt G6PD_DIDMA : 171- 175: peade LmKr-V gfqye G6PD_DROME : 207- 212: ridhy LgKemV qklmt G6PD_ECOLI : 179- 184: ridhy LgKetV lnlla G6PD_EMENI : 189- 194: ridhy LgKemV knili G6PD_ERWCH : 179- 184: ridhy LgKetV lnlla G6PD_HAEIN : 182- 187: ridhy LgKetV qnllv G6PD_HAEIN : 489- 494: rkpsg LmKkkV G6PD_HUMAN : 203- 208: ridhy LgKemV qnlmv G6PD_HUMAN : 495- 499: teade LmKr-V gfqye G6PD_LEUME : 180- 185: ridhy LgKemV qniaa G6PD_MOUSE : 202- 207: ridhy LgKemV qnlmv G6PD_MOUSE : 494- 498: teade LmKr-V gfqye G6PD_PICJA : 181- 186: ridhy LgKemV knllv G6PD_RAT : 202- 207: ridhy LgKemV qnlmv G6PD_RAT : 494- 498: teade LmKr-V gfqye G6PD_SOLTU : 103- 107: seflq LiKy-V sgsyd G6PD_SOLTU : 210- 215: ridhy LgKelV qnllv G6PD_SYNP7 : 200- 205: ridhy LgKetV qnllv G6PD_YEAST : 188- 193: ridhy LgKelV knllv G6PD_ZYMMO : 176- 181: ridhy LgKetV qnllt Number of patterns evaluated by Pratt:3417 Total running time: 6 seconds