------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file G10_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename G10_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: G10_CAEEL 147 G10_HUMAN 144 G10_ORYSA 143 G10_XENLA 144 G10_YEAST 157 Pratt run started at Thu Feb 6 19:31:02 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 49.0406 5( 5) A-D-x(2)-L-x-A-K-W-x(0,1)-K-x(1,2)-G-x(3)-L-C-C-x(2)-C 2: 44.8706 5( 5) D-x(2)-L-x-A-K-W-x(0,1)-K-x(1,2)-G-x(3)-L-C-C-x(2)-C 3: 40.7005 5( 5) L-x-A-K-W-x(0,1)-K-x(1,2)-G-x(3)-L-C-C-x(2)-C 4: 39.7005 5( 5) E-x(2)-W-x-I-x(4)-H-Q-x(0,2)-R-x(0,2)-Y-x(5)-Y-x(5)-S-x(2)-L 5: 36.5305 5( 5) A-K-W-x(0,1)-K-x(1,2)-G-x(3)-L-C-C-x(2)-C 6: 35.5305 5( 5) W-x-I-x(4)-H-Q-x(0,2)-R-x(0,2)-Y-x(5)-Y-x(5)-S-x(2)-L 7: 32.8604 5( 5) C-x-H-C-G-C-x-G-C-x(0,1)-S 8: 32.3604 5( 5) K-W-x(0,1)-K-x(1,2)-G-x(3)-L-C-C-x(2)-C 9: 31.8604 8( 5) I-x(1,3)-H-x(0,1)-Q-x(2)-R-Y-x(5)-Y-x(5)-S-x(2)-L 10: 31.8604 5( 5) N-x(4)-C-x-C-R-V-P-x(2,3)-L-x(0,2)-E 11: 31.3604 5( 5) I-x(4)-H-Q-x(0,2)-R-x(0,2)-Y-x(5)-Y-x(5)-S-x(2)-L 12: 29.1904 5( 5) W-x-K-x-G-x(3)-L-C-C-x(2)-C 13: 28.6904 5( 5) H-C-G-C-x-G-C-x(0,1)-S 14: 28.1904 6( 5) T-x(0,1)-C-x-C-R-V-P-x(2,3)-L 15: 28.1904 6( 5) N-x(2,3)-T-x(0,1)-C-x-C-R-V-P 16: 28.1904 5( 5) W-x(0,1)-K-x(1,2)-G-x(3)-L-C-C-x(2)-C 17: 27.6904 5( 5) C-x-C-R-V-P-x(2,3)-L-x(0,2)-E 18: 27.6904 5( 5) K-x(1,2)-E-x(2)-W-x-I-x(4)-H-Q-x(0,2)-R 19: 27.1904 5( 5) H-Q-x(0,2)-R-x(0,2)-Y-x(5)-Y-x(5)-S-x(2)-L 20: 25.0203 5( 5) K-x-G-x(3)-L-C-C-x(2)-C Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 121.0114 5( 5) A-D-x(2)-L-[IL]-A-K-W-x(0,1)-K-x(1,2)-G-x-[EG]-x-L-C-C-[LV]-[KR]-C-[IV]-[NQ]-x-[NR]-[DE]-x-N-x-[AG]-[ST]-[ANT]-C-[IV]-C-R-V-P-[KR]-x(3)-[DE]-x-[EGS] B 2: 116.8414 5( 5) D-x(2)-L-[IL]-A-K-W-x(0,1)-K-x(1,2)-G-x-[EG]-x-L-C-C-[LV]-[KR]-C-[IV]-[NQ]-x-[NR]-[DE]-x-N-x-[AG]-[ST]-[ANT]-C-[IV]-C-R-V-P-[KR]-x(3)-[DE]-x-[EGS] C 3: 115.8753 8( 5) I-x(1,3)-H-x(0,1)-Q-[KR]-[ST]-R-Y-[ILV]-[FY]-[DT]-[LM]-[FY]-Y-x-[KR]-x-[AE]-x-S-x-[DE]-L-x-[DE]-x(4)-[AEQ]-x(2)-A-D-x(2)-L-[IL]-A-K-W-[KR]-K-[QT]-G-x-[EG] D 4: 113.1218 5( 5) H-Q-x(0,2)-R-x(0,2)-Y-[ILV]-[FY]-[DT]-[LM]-[FY]-Y-x-[KR]-x-[AE]-x-S-x-[DE]-L-x-[DE]-x(4)-[AEQ]-x(2)-A-D-x(2)-L-[IL]-A-K-W-[KR]-K-[QT]-G-x-[EG]-x-L-C E 5: 112.6713 5( 5) L-[IL]-A-K-W-x(0,1)-K-x(1,2)-G-x-[EG]-x-L-C-C-[LV]-[KR]-C-[IV]-[NQ]-x-[NR]-[DE]-x-N-x-[AG]-[ST]-[ANT]-C-[IV]-C-R-V-P-[KR]-x(3)-[DE]-x-[EGS] F 6: 112.3376 5( 5) I-[FM]-x-[IL]-x-H-Q-x(0,2)-R-x(0,2)-Y-[ILV]-[FY]-[DT]-[LM]-[FY]-Y-x-[KR]-x-[AE]-x-S-x-[DE]-L-x-[DE]-x(4)-[AEQ]-x(2)-A-D-x(2)-L-[IL]-A-K-W-[KR]-K-[QT]-G G 7: 112.3058 5( 5) W-[EP]-I-[FM]-x-[IL]-x-H-Q-x(0,2)-R-x(0,2)-Y-[ILV]-[FY]-[DT]-[LM]-[FY]-Y-x-[KR]-x-[AE]-x-S-x-[DE]-L-x-[DE]-x(4)-[AEQ]-x(2)-A-D-x(2)-L-[IL]-A-K-W-[KR]-K H 8: 105.3875 5( 5) K-x(1,2)-E-x(2)-W-[EP]-I-[FM]-x-[IL]-x-H-Q-x(0,2)-R-Y-[ILV]-[FY]-[DT]-[LM]-[FY]-Y-x-[KR]-x-[AE]-x-S-x-[DE]-L-x-[DE]-x(4)-[AEQ]-x(2)-A-D-x(2)-L-[IL]-A I 9: 105.2147 5( 5) A-K-W-x(0,1)-K-x(1,2)-G-x-[EG]-x-L-C-C-[LV]-[KR]-C-[IV]-[NQ]-x-[NR]-[DE]-x-N-x-[AG]-[ST]-[ANT]-C-[IV]-C-R-V-P-[KR]-x(3)-[DE]-x-[EGS] J 10: 104.8875 5( 5) E-x(2)-W-[EP]-I-[FM]-x-[IL]-x-H-Q-x(0,2)-R-x(0,2)-Y-[ILV]-[FY]-[DT]-[LM]-[FY]-Y-x-[KR]-x-[AE]-x-S-x-[DE]-L-x-[DE]-x(4)-[AEQ]-x(2)-A-D-x(2)-L-[IL]-A-K K 11: 104.3247 5( 5) W-[KR]-K-[QT]-G-x-[EG]-x-L-C-C-[LV]-[KR]-C-[IV]-[NQ]-x-[NR]-[DE]-x-N-x-[AG]-[ST]-[ANT]-C-[IV]-C-R-V-P-[KR]-x(3)-[DE]-x-[EGS] L 12: 101.0446 5( 5) K-W-x(0,1)-K-x(1,2)-G-x-[EG]-x-L-C-C-[LV]-[KR]-C-[IV]-[NQ]-x-[NR]-[DE]-x-N-x-[AG]-[ST]-[ANT]-C-[IV]-C-R-V-P-[KR]-x(3)-[DE]-x-[EGS] M 13: 96.9064 5( 5) K-[QT]-G-x-[EG]-x-L-C-C-[LV]-[KR]-C-[IV]-[NQ]-x-[NR]-[DE]-x-N-x-[AG]-[ST]-[ANT]-C-[IV]-C-R-V-P-[KR]-x(3)-[DE]-x-[EGS] N 14: 96.8745 5( 5) W-x(0,1)-K-x(1,2)-G-x-[EG]-x-L-C-C-[LV]-[KR]-C-[IV]-[NQ]-x-[NR]-[DE]-x-N-x-[AG]-[ST]-[ANT]-C-[IV]-C-R-V-P-[KR]-x(3)-[DE]-x-[EGS] O 15: 51.2003 6( 5) T-x(0,1)-C-[IV]-C-R-V-P-x(2,3)-L-[DER]-x-[DEG]-x(4)-[CGV]-x(2)-[CGV]-[CGS]-x(3)-[AC]-[SV] P 16: 44.0849 5( 5) N-x-[AG]-[ST]-[ANT]-C-[IV]-C-R-V-P-x(2,3)-L-x(0,2)-E Q 17: 41.9263 5( 5) C-[TV]-H-C-G-C-[HKR]-G-C-x(0,1)-S-[GT] R 18: 40.4580 6( 5) N-x(2,3)-T-x(0,1)-C-[IV]-C-R-V-P-[KR]-x(3)-[DE]-x-[EGS] S 19: 36.9749 5( 5) E-x(2)-W-[EP]-I-[FM]-x-[IL]-x-H-Q-x(0,2)-R-x(0,2)-Y T 20: 34.5844 5( 5) H-C-G-C-[HKR]-G-C-x(0,1)-S-[GT] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 121.0114 5( 5) A-D-x(2)-L-[IL]-A-K-W-x(0,1)-K-x(1,2)-G-x-[EG]-x-L-C-C-[LV]-[KR]-C-[IV]-[NQ]-x-[NR]-[DE]-x-N-x-[AG]-[ST]-[ANT]-C-[IV]-C-R-V-P-[KR]-x(3)-[DE]-x-[EGS] Occurences: 5(5) G10_CAEEL : 87- 132: ltakf ADaaLIAKWkKq-GyEnLCCVKCVNtRDsNfGTACICRVPKsklDaE rviec G10_CAEEL : 87- 132: ltakf ADaaLIAKW-KkqGyEnLCCVKCVNtRDsNfGTACICRVPKsklDaE rviec G10_HUMAN : 84- 129: ykegl ADknLLAKWkKq-GiGnLCCLRCIQtRDtNfGTNCICRVPKsklEvG riiec G10_HUMAN : 84- 129: ykegl ADknLLAKW-KkqGiGnLCCLRCIQtRDtNfGTNCICRVPKsklEvG riiec G10_ORYSA : 83- 128: ldqgh ADrnLIAKWkKq-GyErLCCLRCIQtRDhNfATTCVCRVPKhlrEdS iecvh G10_ORYSA : 83- 128: ldqgh ADrnLIAKW-KkqGyErLCCLRCIQtRDhNfATTCVCRVPKhlrEdS iecvh G10_XENLA : 84- 129: iregy ADknLIAKWkKq-GyEnLCCLRCIQtRDtNfGTNCICRVPKtklEvG riiec G10_XENLA : 84- 129: iregy ADknLIAKW-KkqGyEnLCCLRCIQtRDtNfGTNCICRVPKtklEvG riiec G10_YEAST : 87- 132: ikeky ADklLIAKWrKt-GyEkLCCLRCIQkNEtNnGSTCICRVPRaqlEeE arkkg B 2: 116.8414 5( 5) D-x(2)-L-[IL]-A-K-W-x(0,1)-K-x(1,2)-G-x-[EG]-x-L-C-C-[LV]-[KR]-C-[IV]-[NQ]-x-[NR]-[DE]-x-N-x-[AG]-[ST]-[ANT]-C-[IV]-C-R-V-P-[KR]-x(3)-[DE]-x-[EGS] Occurences: 5(5) G10_CAEEL : 88- 132: takfa DaaLIAKWkKq-GyEnLCCVKCVNtRDsNfGTACICRVPKsklDaE rviec G10_CAEEL : 88- 132: takfa DaaLIAKW-KkqGyEnLCCVKCVNtRDsNfGTACICRVPKsklDaE rviec G10_HUMAN : 85- 129: kegla DknLLAKWkKq-GiGnLCCLRCIQtRDtNfGTNCICRVPKsklEvG riiec G10_HUMAN : 85- 129: kegla DknLLAKW-KkqGiGnLCCLRCIQtRDtNfGTNCICRVPKsklEvG riiec G10_ORYSA : 84- 128: dqgha DrnLIAKWkKq-GyErLCCLRCIQtRDhNfATTCVCRVPKhlrEdS iecvh G10_ORYSA : 84- 128: dqgha DrnLIAKW-KkqGyErLCCLRCIQtRDhNfATTCVCRVPKhlrEdS iecvh G10_XENLA : 85- 129: regya DknLIAKWkKq-GyEnLCCLRCIQtRDtNfGTNCICRVPKtklEvG riiec G10_XENLA : 85- 129: regya DknLIAKW-KkqGyEnLCCLRCIQtRDtNfGTNCICRVPKtklEvG riiec G10_YEAST : 88- 132: kekya DklLIAKWrKt-GyEkLCCLRCIQkNEtNnGSTCICRVPRaqlEeE arkkg C 3: 115.8753 8( 5) I-x(1,3)-H-x(0,1)-Q-[KR]-[ST]-R-Y-[ILV]-[FY]-[DT]-[LM]-[FY]-Y-x-[KR]-x-[AE]-x-S-x-[DE]-L-x-[DE]-x(4)-[AEQ]-x(2)-A-D-x(2)-L-[IL]-A-K-W-[KR]-K-[QT]-G-x-[EG] Occurences: 8(5) G10_CAEEL : 52- 101: einwp IfriHhQRSRYVYDMYYkKaEiSrELyEfcltAkfADaaLIAKWKKQGyE nlccv G10_CAEEL : 55- 101: wpifr Ih--H-QRSRYVYDMYYkKaEiSrELyEfcltAkfADaaLIAKWKKQGyE nlccv G10_HUMAN : 49- 98: eslwp IfriHhQKTRYIFDLFYkRkAySrELlDicykEglADknLLAKWKKQGiG nlccl G10_HUMAN : 52- 98: wpifr Ih--H-QKTRYIFDLFYkRkAySrELlDicykEglADknLLAKWKKQGiG nlccl G10_ORYSA : 51- 97: wpifk In--H-QRSRYLYDLYYnRkEiSqELyEfcldQghADrnLIAKWKKQGyE rlccl G10_XENLA : 49- 98: eslwp IfriHhQKTRYIFDLFYkRkAiSrELyDycirEgyADknLIAKWKKQGyE nlccl G10_XENLA : 52- 98: wpifr Ih--H-QKTRYIFDLFYkRkAiSrELyDycirEgyADknLIAKWKKQGyE nlccl G10_YEAST : 52- 101: eqlwe ImqlHhQRSRYIYTLYYkRkAiSkDLyDwlikEkyADklLIAKWRKTGyE klccl D 4: 113.1218 5( 5) H-Q-x(0,2)-R-x(0,2)-Y-[ILV]-[FY]-[DT]-[LM]-[FY]-Y-x-[KR]-x-[AE]-x-S-x-[DE]-L-x-[DE]-x(4)-[AEQ]-x(2)-A-D-x(2)-L-[IL]-A-K-W-[KR]-K-[QT]-G-x-[EG]-x-L-C Occurences: 5(5) G10_CAEEL : 57- 104: ifrih HQrsR--YVYDMYYkKaEiSrELyEfcltAkfADaaLIAKWKKQGyEnLC cvkcv G10_CAEEL : 57- 104: ifrih HQ--RsrYVYDMYYkKaEiSrELyEfcltAkfADaaLIAKWKKQGyEnLC cvkcv G10_HUMAN : 54- 101: ifrih HQktR--YIFDLFYkRkAySrELlDicykEglADknLLAKWKKQGiGnLC clrci G10_ORYSA : 53- 100: ifkin HQrsR--YLYDLYYnRkEiSqELyEfcldQghADrnLIAKWKKQGyErLC clrci G10_ORYSA : 53- 100: ifkin HQ--RsrYLYDLYYnRkEiSqELyEfcldQghADrnLIAKWKKQGyErLC clrci G10_XENLA : 54- 101: ifrih HQktR--YIFDLFYkRkAiSrELyDycirEgyADknLIAKWKKQGyEnLC clrci G10_YEAST : 57- 104: imqlh HQrsR--YIYTLYYkRkAiSkDLyDwlikEkyADklLIAKWRKTGyEkLC clrci G10_YEAST : 57- 104: imqlh HQ--RsrYIYTLYYkRkAiSkDLyDwlikEkyADklLIAKWRKTGyEkLC clrci E 5: 112.6713 5( 5) L-[IL]-A-K-W-x(0,1)-K-x(1,2)-G-x-[EG]-x-L-C-C-[LV]-[KR]-C-[IV]-[NQ]-x-[NR]-[DE]-x-N-x-[AG]-[ST]-[ANT]-C-[IV]-C-R-V-P-[KR]-x(3)-[DE]-x-[EGS] Occurences: 5(5) G10_CAEEL : 91- 132: fadaa LIAKWkKq-GyEnLCCVKCVNtRDsNfGTACICRVPKsklDaE rviec G10_CAEEL : 91- 132: fadaa LIAKW-KkqGyEnLCCVKCVNtRDsNfGTACICRVPKsklDaE rviec G10_HUMAN : 88- 129: ladkn LLAKWkKq-GiGnLCCLRCIQtRDtNfGTNCICRVPKsklEvG riiec G10_HUMAN : 88- 129: ladkn LLAKW-KkqGiGnLCCLRCIQtRDtNfGTNCICRVPKsklEvG riiec G10_ORYSA : 87- 128: hadrn LIAKWkKq-GyErLCCLRCIQtRDhNfATTCVCRVPKhlrEdS iecvh G10_ORYSA : 87- 128: hadrn LIAKW-KkqGyErLCCLRCIQtRDhNfATTCVCRVPKhlrEdS iecvh G10_XENLA : 88- 129: yadkn LIAKWkKq-GyEnLCCLRCIQtRDtNfGTNCICRVPKtklEvG riiec G10_XENLA : 88- 129: yadkn LIAKW-KkqGyEnLCCLRCIQtRDtNfGTNCICRVPKtklEvG riiec G10_YEAST : 91- 132: yadkl LIAKWrKt-GyEkLCCLRCIQkNEtNnGSTCICRVPRaqlEeE arkkg F 6: 112.3376 5( 5) I-[FM]-x-[IL]-x-H-Q-x(0,2)-R-x(0,2)-Y-[ILV]-[FY]-[DT]-[LM]-[FY]-Y-x-[KR]-x-[AE]-x-S-x-[DE]-L-x-[DE]-x(4)-[AEQ]-x(2)-A-D-x(2)-L-[IL]-A-K-W-[KR]-K-[QT]-G Occurences: 5(5) G10_CAEEL : 52- 99: einwp IFrIhHQrsR--YVYDMYYkKaEiSrELyEfcltAkfADaaLIAKWKKQG yenlc G10_CAEEL : 52- 99: einwp IFrIhHQ--RsrYVYDMYYkKaEiSrELyEfcltAkfADaaLIAKWKKQG yenlc G10_HUMAN : 49- 96: eslwp IFrIhHQktR--YIFDLFYkRkAySrELlDicykEglADknLLAKWKKQG ignlc G10_ORYSA : 48- 95: eamwp IFkInHQrsR--YLYDLYYnRkEiSqELyEfcldQghADrnLIAKWKKQG yerlc G10_ORYSA : 48- 95: eamwp IFkInHQ--RsrYLYDLYYnRkEiSqELyEfcldQghADrnLIAKWKKQG yerlc G10_XENLA : 49- 96: eslwp IFrIhHQktR--YIFDLFYkRkAiSrELyDycirEgyADknLIAKWKKQG yenlc G10_YEAST : 52- 99: eqlwe IMqLhHQrsR--YIYTLYYkRkAiSkDLyDwlikEkyADklLIAKWRKTG yeklc G10_YEAST : 52- 99: eqlwe IMqLhHQ--RsrYIYTLYYkRkAiSkDLyDwlikEkyADklLIAKWRKTG yeklc G 7: 112.3058 5( 5) W-[EP]-I-[FM]-x-[IL]-x-H-Q-x(0,2)-R-x(0,2)-Y-[ILV]-[FY]-[DT]-[LM]-[FY]-Y-x-[KR]-x-[AE]-x-S-x-[DE]-L-x-[DE]-x(4)-[AEQ]-x(2)-A-D-x(2)-L-[IL]-A-K-W-[KR]-K Occurences: 5(5) G10_CAEEL : 50- 97: ktein WPIFrIhHQrsR--YVYDMYYkKaEiSrELyEfcltAkfADaaLIAKWKK qgyen G10_CAEEL : 50- 97: ktein WPIFrIhHQ--RsrYVYDMYYkKaEiSrELyEfcltAkfADaaLIAKWKK qgyen G10_HUMAN : 47- 94: kvesl WPIFrIhHQktR--YIFDLFYkRkAySrELlDicykEglADknLLAKWKK qgign G10_ORYSA : 46- 93: kceam WPIFkInHQrsR--YLYDLYYnRkEiSqELyEfcldQghADrnLIAKWKK qgyer G10_ORYSA : 46- 93: kceam WPIFkInHQ--RsrYLYDLYYnRkEiSqELyEfcldQghADrnLIAKWKK qgyer G10_XENLA : 47- 94: kvesl WPIFrIhHQktR--YIFDLFYkRkAiSrELyDycirEgyADknLIAKWKK qgyen G10_YEAST : 50- 97: sneql WEIMqLhHQrsR--YIYTLYYkRkAiSkDLyDwlikEkyADklLIAKWRK tgyek G10_YEAST : 50- 97: sneql WEIMqLhHQ--RsrYIYTLYYkRkAiSkDLyDwlikEkyADklLIAKWRK tgyek H 8: 105.3875 5( 5) K-x(1,2)-E-x(2)-W-[EP]-I-[FM]-x-[IL]-x-H-Q-x(0,2)-R-Y-[ILV]-[FY]-[DT]-[LM]-[FY]-Y-x-[KR]-x-[AE]-x-S-x-[DE]-L-x-[DE]-x(4)-[AEQ]-x(2)-A-D-x(2)-L-[IL]-A Occurences: 5(5) G10_CAEEL : 45- 93: hegkr Kt-EinWPIFrIhHQrsRYVYDMYYkKaEiSrELyEfcltAkfADaaLIA kwkkq G10_HUMAN : 42- 90: hegkr Kv-EslWPIFrIhHQktRYIFDLFYkRkAySrELlDicykEglADknLLA kwkkq G10_ORYSA : 41- 89: hdgrr Kc-EamWPIFkInHQrsRYLYDLYYnRkEiSqELyEfcldQghADrnLIA kwkkq G10_XENLA : 42- 90: hegkr Kv-EslWPIFrIhHQktRYIFDLFYkRkAiSrELyDycirEgyADknLIA kwkkq G10_YEAST : 44- 93: sklaa KsnEqlWEIMqLhHQrsRYIYTLYYkRkAiSkDLyDwlikEkyADklLIA kwrkt I 9: 105.2147 5( 5) A-K-W-x(0,1)-K-x(1,2)-G-x-[EG]-x-L-C-C-[LV]-[KR]-C-[IV]-[NQ]-x-[NR]-[DE]-x-N-x-[AG]-[ST]-[ANT]-C-[IV]-C-R-V-P-[KR]-x(3)-[DE]-x-[EGS] Occurences: 5(5) G10_CAEEL : 93- 132: daali AKWkKq-GyEnLCCVKCVNtRDsNfGTACICRVPKsklDaE rviec G10_CAEEL : 93- 132: daali AKW-KkqGyEnLCCVKCVNtRDsNfGTACICRVPKsklDaE rviec G10_HUMAN : 90- 129: dknll AKWkKq-GiGnLCCLRCIQtRDtNfGTNCICRVPKsklEvG riiec G10_HUMAN : 90- 129: dknll AKW-KkqGiGnLCCLRCIQtRDtNfGTNCICRVPKsklEvG riiec G10_ORYSA : 89- 128: drnli AKWkKq-GyErLCCLRCIQtRDhNfATTCVCRVPKhlrEdS iecvh G10_ORYSA : 89- 128: drnli AKW-KkqGyErLCCLRCIQtRDhNfATTCVCRVPKhlrEdS iecvh G10_XENLA : 90- 129: dknli AKWkKq-GyEnLCCLRCIQtRDtNfGTNCICRVPKtklEvG riiec G10_XENLA : 90- 129: dknli AKW-KkqGyEnLCCLRCIQtRDtNfGTNCICRVPKtklEvG riiec G10_YEAST : 93- 132: dklli AKWrKt-GyEkLCCLRCIQkNEtNnGSTCICRVPRaqlEeE arkkg J 10: 104.8875 5( 5) E-x(2)-W-[EP]-I-[FM]-x-[IL]-x-H-Q-x(0,2)-R-x(0,2)-Y-[ILV]-[FY]-[DT]-[LM]-[FY]-Y-x-[KR]-x-[AE]-x-S-x-[DE]-L-x-[DE]-x(4)-[AEQ]-x(2)-A-D-x(2)-L-[IL]-A-K Occurences: 5(5) G10_CAEEL : 47- 94: gkrkt EinWPIFrIhHQrsR--YVYDMYYkKaEiSrELyEfcltAkfADaaLIAK wkkqg G10_CAEEL : 47- 94: gkrkt EinWPIFrIhHQ--RsrYVYDMYYkKaEiSrELyEfcltAkfADaaLIAK wkkqg G10_HUMAN : 44- 91: gkrkv EslWPIFrIhHQktR--YIFDLFYkRkAySrELlDicykEglADknLLAK wkkqg G10_ORYSA : 43- 90: grrkc EamWPIFkInHQrsR--YLYDLYYnRkEiSqELyEfcldQghADrnLIAK wkkqg G10_ORYSA : 43- 90: grrkc EamWPIFkInHQ--RsrYLYDLYYnRkEiSqELyEfcldQghADrnLIAK wkkqg G10_XENLA : 44- 91: gkrkv EslWPIFrIhHQktR--YIFDLFYkRkAiSrELyDycirEgyADknLIAK wkkqg G10_YEAST : 47- 94: aaksn EqlWEIMqLhHQrsR--YIYTLYYkRkAiSkDLyDwlikEkyADklLIAK wrktg G10_YEAST : 47- 94: aaksn EqlWEIMqLhHQ--RsrYIYTLYYkRkAiSkDLyDwlikEkyADklLIAK wrktg K 11: 104.3247 5( 5) W-[KR]-K-[QT]-G-x-[EG]-x-L-C-C-[LV]-[KR]-C-[IV]-[NQ]-x-[NR]-[DE]-x-N-x-[AG]-[ST]-[ANT]-C-[IV]-C-R-V-P-[KR]-x(3)-[DE]-x-[EGS] Occurences: 5(5) G10_CAEEL : 95- 132: aliak WKKQGyEnLCCVKCVNtRDsNfGTACICRVPKsklDaE rviec G10_HUMAN : 92- 129: nllak WKKQGiGnLCCLRCIQtRDtNfGTNCICRVPKsklEvG riiec G10_ORYSA : 91- 128: nliak WKKQGyErLCCLRCIQtRDhNfATTCVCRVPKhlrEdS iecvh G10_XENLA : 92- 129: nliak WKKQGyEnLCCLRCIQtRDtNfGTNCICRVPKtklEvG riiec G10_YEAST : 95- 132: lliak WRKTGyEkLCCLRCIQkNEtNnGSTCICRVPRaqlEeE arkkg L 12: 101.0446 5( 5) K-W-x(0,1)-K-x(1,2)-G-x-[EG]-x-L-C-C-[LV]-[KR]-C-[IV]-[NQ]-x-[NR]-[DE]-x-N-x-[AG]-[ST]-[ANT]-C-[IV]-C-R-V-P-[KR]-x(3)-[DE]-x-[EGS] Occurences: 5(5) G10_CAEEL : 94- 132: aalia KWkKq-GyEnLCCVKCVNtRDsNfGTACICRVPKsklDaE rviec G10_CAEEL : 94- 132: aalia KW-KkqGyEnLCCVKCVNtRDsNfGTACICRVPKsklDaE rviec G10_HUMAN : 91- 129: knlla KWkKq-GiGnLCCLRCIQtRDtNfGTNCICRVPKsklEvG riiec G10_HUMAN : 91- 129: knlla KW-KkqGiGnLCCLRCIQtRDtNfGTNCICRVPKsklEvG riiec G10_ORYSA : 90- 128: rnlia KWkKq-GyErLCCLRCIQtRDhNfATTCVCRVPKhlrEdS iecvh G10_ORYSA : 90- 128: rnlia KW-KkqGyErLCCLRCIQtRDhNfATTCVCRVPKhlrEdS iecvh G10_XENLA : 91- 129: knlia KWkKq-GyEnLCCLRCIQtRDtNfGTNCICRVPKtklEvG riiec G10_XENLA : 91- 129: knlia KW-KkqGyEnLCCLRCIQtRDtNfGTNCICRVPKtklEvG riiec G10_YEAST : 94- 132: kllia KWrKt-GyEkLCCLRCIQkNEtNnGSTCICRVPRaqlEeE arkkg M 13: 96.9064 5( 5) K-[QT]-G-x-[EG]-x-L-C-C-[LV]-[KR]-C-[IV]-[NQ]-x-[NR]-[DE]-x-N-x-[AG]-[ST]-[ANT]-C-[IV]-C-R-V-P-[KR]-x(3)-[DE]-x-[EGS] Occurences: 5(5) G10_CAEEL : 97- 132: iakwk KQGyEnLCCVKCVNtRDsNfGTACICRVPKsklDaE rviec G10_HUMAN : 94- 129: lakwk KQGiGnLCCLRCIQtRDtNfGTNCICRVPKsklEvG riiec G10_ORYSA : 93- 128: iakwk KQGyErLCCLRCIQtRDhNfATTCVCRVPKhlrEdS iecvh G10_XENLA : 94- 129: iakwk KQGyEnLCCLRCIQtRDtNfGTNCICRVPKtklEvG riiec G10_YEAST : 97- 132: iakwr KTGyEkLCCLRCIQkNEtNnGSTCICRVPRaqlEeE arkkg N 14: 96.8745 5( 5) W-x(0,1)-K-x(1,2)-G-x-[EG]-x-L-C-C-[LV]-[KR]-C-[IV]-[NQ]-x-[NR]-[DE]-x-N-x-[AG]-[ST]-[ANT]-C-[IV]-C-R-V-P-[KR]-x(3)-[DE]-x-[EGS] Occurences: 5(5) G10_CAEEL : 95- 132: aliak WkKq-GyEnLCCVKCVNtRDsNfGTACICRVPKsklDaE rviec G10_CAEEL : 95- 132: aliak W-KkqGyEnLCCVKCVNtRDsNfGTACICRVPKsklDaE rviec G10_HUMAN : 92- 129: nllak WkKq-GiGnLCCLRCIQtRDtNfGTNCICRVPKsklEvG riiec G10_HUMAN : 92- 129: nllak W-KkqGiGnLCCLRCIQtRDtNfGTNCICRVPKsklEvG riiec G10_ORYSA : 91- 128: nliak WkKq-GyErLCCLRCIQtRDhNfATTCVCRVPKhlrEdS iecvh G10_ORYSA : 91- 128: nliak W-KkqGyErLCCLRCIQtRDhNfATTCVCRVPKhlrEdS iecvh G10_XENLA : 92- 129: nliak WkKq-GyEnLCCLRCIQtRDtNfGTNCICRVPKtklEvG riiec G10_XENLA : 92- 129: nliak W-KkqGyEnLCCLRCIQtRDtNfGTNCICRVPKtklEvG riiec G10_YEAST : 95- 132: lliak WrKt-GyEkLCCLRCIQkNEtNnGSTCICRVPRaqlEeE arkkg O 15: 51.2003 6( 5) T-x(0,1)-C-[IV]-C-R-V-P-x(2,3)-L-[DER]-x-[DEG]-x(4)-[CGV]-x(2)-[CGV]-[CGS]-x(3)-[AC]-[SV] Occurences: 6(5) G10_CAEEL : 118- 146: dsnfg TaCICRVPkskLDaErvieCvhCGchgCS g G10_HUMAN : 115- 143: dtnfg TnCICRVPkskLEvGriieCthCGcrgCS g G10_ORYSA : 114- 141: dhnfa TtCVCRVPkh-LReDsiecVhcGCkgcAS gg G10_ORYSA : 115- 141: hnfat T-CVCRVPkh-LReDsiecVhcGCkgcAS gg G10_XENLA : 115- 143: dtnfg TnCICRVPktkLEvGriieCthCGcrgCS g G10_YEAST : 119- 146: tnngs T-CICRVPraqLEeEarkkGtqVSfhqCV hcgcr P 16: 44.0849 5( 5) N-x-[AG]-[ST]-[ANT]-C-[IV]-C-R-V-P-x(2,3)-L-x(0,2)-E Occurences: 5(5) G10_CAEEL : 115- 132: ntrds NfGTACICRVPkskLdaE rviec G10_HUMAN : 112- 127: qtrdt NfGTNCICRVPkskL--E vgrii G10_ORYSA : 111- 126: qtrdh NfATTCVCRVPkh-Lr-E dsiec G10_XENLA : 112- 127: qtrdt NfGTNCICRVPktkL--E vgrii G10_YEAST : 115- 130: qknet NnGSTCICRVPraqL--E eeark G10_YEAST : 115- 131: qknet NnGSTCICRVPraqLe-E earkk G10_YEAST : 115- 132: qknet NnGSTCICRVPraqLeeE arkkg Q 17: 41.9263 5( 5) C-[TV]-H-C-G-C-[HKR]-G-C-x(0,1)-S-[GT] Occurences: 5(5) G10_CAEEL : 137- 147: ervie CVHCGCHGC-SG G10_HUMAN : 134- 144: griie CTHCGCRGC-SG G10_ORYSA : 131- 142: edsie CVHCGCKGCaSG g G10_XENLA : 134- 144: griie CTHCGCRGC-SG G10_YEAST : 145- 156: vsfhq CVHCGCRGCaST d R 18: 40.4580 6( 5) N-x(2,3)-T-x(0,1)-C-[IV]-C-R-V-P-[KR]-x(3)-[DE]-x-[EGS] Occurences: 6(5) G10_CAEEL : 115- 132: ntrds Nfg-TaCICRVPKsklDaE rviec G10_HUMAN : 112- 129: qtrdt Nfg-TnCICRVPKsklEvG riiec G10_ORYSA : 111- 128: qtrdh NfatT-CVCRVPKhlrEdS iecvh G10_ORYSA : 111- 128: qtrdh Nfa-TtCVCRVPKhlrEdS iecvh G10_XENLA : 112- 129: qtrdt Nfg-TnCICRVPKtklEvG riiec G10_YEAST : 115- 132: qknet NngsT-CICRVPRaqlEeE arkkg G10_YEAST : 116- 132: knetn Ngs-T-CICRVPRaqlEeE arkkg S 19: 36.9749 5( 5) E-x(2)-W-[EP]-I-[FM]-x-[IL]-x-H-Q-x(0,2)-R-x(0,2)-Y Occurences: 5(5) G10_CAEEL : 47- 62: gkrkt EinWPIFrIhHQrsR--Y vydmy G10_CAEEL : 47- 62: gkrkt EinWPIFrIhHQ--RsrY vydmy G10_HUMAN : 44- 59: gkrkv EslWPIFrIhHQktR--Y ifdlf G10_ORYSA : 43- 58: grrkc EamWPIFkInHQrsR--Y lydly G10_ORYSA : 43- 58: grrkc EamWPIFkInHQ--RsrY lydly G10_XENLA : 44- 59: gkrkv EslWPIFrIhHQktR--Y ifdlf G10_YEAST : 47- 62: aaksn EqlWEIMqLhHQrsR--Y iytly G10_YEAST : 47- 62: aaksn EqlWEIMqLhHQ--RsrY iytly T 20: 34.5844 5( 5) H-C-G-C-[HKR]-G-C-x(0,1)-S-[GT] Occurences: 5(5) G10_CAEEL : 139- 147: viecv HCGCHGC-SG G10_HUMAN : 136- 144: iiect HCGCRGC-SG G10_ORYSA : 133- 142: siecv HCGCKGCaSG g G10_XENLA : 136- 144: iiect HCGCRGC-SG G10_YEAST : 147- 156: fhqcv HCGCRGCaST d Number of patterns evaluated by Pratt:2213 Total running time: 1 seconds