------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 4 sequences from file F_ACTIN_CAPPING_BETA PATTERN CONSERVATION: CM: min Nr of Seqs to Match 4 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename F_ACTIN_CAPPING_BETA.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CAPB_CAEEL 270 CAPB_CHICK 277 CAPB_DICDI 272 CAPB_YEAST 287 Pratt run started at Thu Feb 6 19:30:58 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 93.9112 4( 4) Y-x(2,4)-P-x(0,2)-L-x(5)-P-S-x(3)-R-x(2)-E-x(2)-A-N-x(2)-F-x(2)-Y-x(2)-L-Y-x-E-G-G-x-S-S-V-Y-x-W-D-L 2: 87.5711 4( 4) L-D-L-x-R-R-L-x-P-x(5)-N-L-x(2)-L-x(2)-L-x-P-x-L-x(2)-D-L-L-S-x(2)-D-x-P-L-x(4)-D 3: 87.0711 4( 4) L-D-L-x(0,1)-R-R-L-x-P-x(5)-N-L-x(2)-L-x(2)-L-x-P-x-L-x(2)-D-L-L-S-x(2)-D-x-P-L-x(4)-D 4: 86.5711 4( 4) L-x(5)-P-S-x(2,3)-R-x(2,3)-E-x(2)-A-N-x(2)-F-x(2)-Y-x(2)-L-Y-x-E-G-G-x-S-S-V-Y-x-W-D-L 5: 83.4010 4( 4) D-L-x-R-R-L-x-P-x(5)-N-L-x(2)-L-x(2)-L-x-P-x-L-x(2)-D-L-L-S-x(2)-D-x-P-L-x(4)-D 6: 82.9010 4( 4) S-x(3)-R-x(2)-E-x(2)-A-N-x(2)-F-x(2)-Y-x(2)-L-Y-x-E-G-G-x-S-S-V-Y-x-W-D-L-x(3,4)-F 7: 82.9010 4( 4) P-x(4)-R-x(2)-E-x(2)-A-N-x(2)-F-x(2)-Y-x(2)-L-Y-x-E-G-G-x-S-S-V-Y-x-W-D-L-x(3,4)-F 8: 82.4010 4( 4) P-S-x(2,3)-R-x(2,3)-E-x(2)-A-N-x(2)-F-x(2)-Y-x(2)-L-Y-x-E-G-G-x-S-S-V-Y-x-W-D-L 9: 82.4010 4( 4) D-x(0,1)-L-x(0,1)-R-R-L-x-P-x(5)-N-L-x(2)-L-x(2)-L-x-P-x-L-x(2)-D-L-L-S-x(2)-D-x-P-L-x(4)-D 10: 78.7310 4( 4) R-x(2)-E-x(2)-A-N-x(2)-F-x(2)-Y-x(2)-L-Y-x-E-G-G-x-S-S-V-Y-x-W-D-L-x(3,4)-F 11: 78.7310 5( 4) L-x(0,1)-R-R-L-x-P-x(5)-N-L-x(2)-L-x(2)-L-x-P-x-L-x(2)-D-L-L-S-x(2)-D-x-P-L-x(4)-D 12: 78.2310 5( 4) R-x(2,3)-E-x(2)-A-N-x(2)-F-x(2)-Y-x(2)-L-Y-x-E-G-G-x-S-S-V-Y-x-W-D-L-x(3,4)-F 13: 78.2310 4( 4) Y-x(0,1)-L-C-x(0,1)-D-Y-N-R-D-x-D-S-x-R-S-P-W-S-N-x-Y-x-P-x-L 14: 75.0609 4( 4) L-x-C-D-Y-N-R-D-x-D-S-x-R-S-P-W-S-N-x-Y-x-P-x-L 15: 74.5609 4( 4) E-x(2)-A-N-x(2)-F-x(2)-Y-x(2)-L-Y-x-E-G-G-x-S-S-V-Y-x-W-D-L-x(3,4)-F 16: 74.5609 4( 4) L-C-x(0,1)-D-Y-N-R-D-x-D-S-x-R-S-P-W-S-N-x-Y-x-P-x-L 17: 74.5609 7( 4) L-x(0,1)-C-D-Y-N-R-D-x-D-S-x-R-S-P-W-S-N-x-Y-x-P-x-L 18: 73.5609 6( 4) E-x(0,2)-A-N-x(2)-F-x(2)-Y-x(2)-L-Y-x-E-G-G-x-S-S-V-Y-x-W-D-L-x(3,4)-F 19: 70.8909 4( 4) C-D-Y-N-R-D-x-D-S-x-R-S-P-W-S-N-x-Y-x-P-x-L 20: 70.8909 4( 4) R-x-L-x-P-x(5)-N-L-x(2)-L-x(2)-L-x-P-x-L-x(2)-D-L-L-S-x(2)-D-x-P-L-x(4)-D Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 129.3238 4( 4) Y-x(2,4)-P-x(0,2)-L-[EQS]-[DG]-[AGS]-x(2)-P-S-[AES]-x(2)-R-[DK]-[ILM]-E-[IV]-x-A-N-[ADEN]-x-F-[DE]-x-Y-x-[DN]-L-Y-[FY]-E-G-G-[IV]-S-S-V-Y-x-W-D-L B 2: 126.6620 4( 4) L-D-L-x-R-R-L-[NP]-P-[QST]-x(2)-[DEQ]-[DEK]-N-L-[ANST]-[DGN]-L-[IL]-[DE]-L-x-P-x-L-[ACTV]-[DEQ]-D-L-L-S-[ST]-[IV]-D-x-P-L-x(2)-[AQ]-x-D-x(2)-[DSTV] C 3: 126.1620 4( 4) L-D-L-x(0,1)-R-R-L-[NP]-P-[QST]-x(2)-[DEQ]-[DEK]-N-L-[ANST]-[DGN]-L-[IL]-[DE]-L-x-P-x-L-[ACTV]-[DEQ]-D-L-L-S-[ST]-[IV]-D-x-P-L-x(2)-[AQ]-x-D-x(2)-[DSTV] D 4: 125.0822 4( 4) D-L-x-R-R-L-[NP]-P-[QST]-x(2)-[DEQ]-[DEK]-N-L-[ANST]-[DGN]-L-[IL]-[DE]-L-x-P-x-L-[ACTV]-[DEQ]-D-L-L-S-[ST]-[IV]-D-x-P-L-x(2)-[AQ]-x-D-x(2)-[DSTV]-x(2)-[DQR] E 5: 124.9457 4( 4) L-[EQS]-[DG]-[AGS]-x(2)-P-S-x(2,3)-R-x(2,3)-E-[IV]-x-A-N-[ADEN]-x-F-[DE]-x-Y-x-[DN]-L-Y-[FY]-E-G-G-[IV]-S-S-V-Y-x-W-D-L-[DN]-x-[EGN]-x(2)-[AGN]-[GV] F 6: 124.0822 4( 4) D-x(0,1)-L-x(0,1)-R-R-L-[NP]-P-[QST]-x(2)-[DEQ]-[DEK]-N-L-[ANST]-[DGN]-L-[IL]-[DE]-L-x-P-x-L-[ACTV]-[DEQ]-D-L-L-S-[ST]-[IV]-D-x-P-L-x(2)-[AQ]-x-D-x(2)-[DSTV]-x(2)-[DQR] G 7: 123.7293 4( 4) P-S-[AES]-x(2)-R-[DK]-[ILM]-E-[IV]-x-A-N-[ADEN]-x-F-[DE]-x-Y-x-[DN]-L-Y-[FY]-E-G-G-[IV]-S-S-V-Y-x-W-D-L-x(3,4)-F-[AN]-[AG]-x(2)-[FL] H 8: 120.4122 5( 4) L-x(0,1)-R-R-L-[NP]-P-[QST]-x(2)-[DEQ]-[DEK]-N-L-[ANST]-[DGN]-L-[IL]-[DE]-L-x-P-x-L-[ACTV]-[DEQ]-D-L-L-S-[ST]-[IV]-D-x-P-L-x(2)-[AQ]-x-D-x(2)-[DSTV]-x(2)-[DQR] I 9: 119.5593 4( 4) S-[AES]-x(2)-R-[DK]-[ILM]-E-[IV]-x-A-N-[ADEN]-x-F-[DE]-x-Y-x-[DN]-L-Y-[FY]-E-G-G-[IV]-S-S-V-Y-x-W-D-L-x(3,4)-F-[AN]-[AG]-x(2)-[FL] J 10: 114.7221 4( 4) P-S-x(2,3)-R-x(2,3)-E-[IV]-x-A-N-[ADEN]-x-F-[DE]-x-Y-x-[DN]-L-Y-[FY]-E-G-G-[IV]-S-S-V-Y-x-W-D-L-[DN]-x-[EGN]-x(2)-[AGN]-[GV]-x(2)-[FILM] K 11: 113.5629 4( 4) R-x-L-x-P-[QST]-x(2)-[DEQ]-[DEK]-N-L-[ANST]-[DGN]-L-[IL]-[DE]-L-x-P-x-L-[ACTV]-[DEQ]-D-L-L-S-[ST]-[IV]-D-x-P-L-x(2)-[AQ]-x-D-x(2)-[DSTV]-x(2)-[DQR]-x(2)-L L 12: 112.7674 4( 4) R-[DK]-[ILM]-E-[IV]-x-A-N-[ADEN]-x-F-[DE]-x-Y-x-[DN]-L-Y-[FY]-E-G-G-[IV]-S-S-V-Y-x-W-D-L-x(3,4)-F-[AN]-[AG]-x(2)-[FL] M 13: 106.1576 5( 4) R-x(2,3)-E-[IV]-x-A-N-[ADEN]-x-F-[DE]-x-Y-x-[DN]-L-Y-[FY]-E-G-G-[IV]-S-S-V-Y-x-W-D-L-x(3,4)-F-[AN]-[AG]-x(2)-[FL] N 14: 102.4876 4( 4) E-[IV]-x-A-N-[ADEN]-x-F-[DE]-x-Y-x-[DN]-L-Y-[FY]-E-G-G-[IV]-S-S-V-Y-x-W-D-L-x(3,4)-F-[AN]-[AG]-x(2)-[FL] O 15: 102.1061 4( 4) Y-x(0,1)-L-C-x(0,1)-D-Y-N-R-D-[AGI]-D-S-[FY]-R-S-P-W-S-N-x-Y-x-P-[EP]-L-[ES]-[DGP]-x(3)-[PQ]-[DS]-[AES] P 16: 98.9360 4( 4) L-x-C-D-Y-N-R-D-[AGI]-D-S-[FY]-R-S-P-W-S-N-x-Y-x-P-[EP]-L-[ES]-[DGP]-x(3)-[PQ]-[DS]-[AES] Q 17: 98.4360 4( 4) L-C-x(0,1)-D-Y-N-R-D-[AGI]-D-S-[FY]-R-S-P-W-S-N-x-Y-x-P-[EP]-L-[ES]-[DGP]-x(3)-[PQ]-[DS]-[AES] R 18: 98.4360 7( 4) L-x(0,1)-C-D-Y-N-R-D-[AGI]-D-S-[FY]-R-S-P-W-S-N-x-Y-x-P-[EP]-L-[ES]-[DGP]-x(3)-[PQ]-[DS]-[AES] S 19: 98.2627 6( 4) E-x(0,2)-A-N-[ADEN]-x-F-[DE]-x-Y-x-[DN]-L-Y-[FY]-E-G-G-[IV]-S-S-V-Y-x-W-D-L-x(3,4)-F-[AN]-[AG]-x(2)-[FL] T 20: 94.7660 4( 4) C-D-Y-N-R-D-[AGI]-D-S-[FY]-R-S-P-W-S-N-x-Y-x-P-[EP]-L-[ES]-[DGP]-x(3)-[PQ]-[DS]-[AES] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 129.3238 4( 4) Y-x(2,4)-P-x(0,2)-L-[EQS]-[DG]-[AGS]-x(2)-P-S-[AES]-x(2)-R-[DK]-[ILM]-E-[IV]-x-A-N-[ADEN]-x-F-[DE]-x-Y-x-[DN]-L-Y-[FY]-E-G-G-[IV]-S-S-V-Y-x-W-D-L Occurences: 4(4) CAPB_CAEEL : 79- 124: pwsnt Ydp--P--LEDGqlPSEkrRKMEIeANAaFEsYrDLYFEGGVSSVYfWDL dnggf CAPB_CHICK : 79- 124: pwsnk Ydp--P--LEDGamPSArlRKLEVeANNaFDqYrDLYFEGGVSSVYlWDL dhgfa CAPB_DICDI : 79- 124: pwsnk Ydp--P--LSGAcyPSSklRDIEVqANEiFEiYlNLYFEGGVSSVYcWDL ddnfa CAPB_YEAST : 81- 130: wsnty YpelsPkdLQDSpfPSAplRKLEIlANDsFDvYrDLYYEGGISSVYlWDL needf B 2: 126.6620 4( 4) L-D-L-x-R-R-L-[NP]-P-[QST]-x(2)-[DEQ]-[DEK]-N-L-[ANST]-[DGN]-L-[IL]-[DE]-L-x-P-x-L-[ACTV]-[DEQ]-D-L-L-S-[ST]-[IV]-D-x-P-L-x(2)-[AQ]-x-D-x(2)-[DSTV] Occurences: 4(4) CAPB_CAEEL : 10- 55: qldca LDLmRRLPPQhcDKNLTDLIDLcPhLVDDLLSTIDqPLkiAaDreT gkqyl CAPB_CHICK : 10- 55: qldca LDLmRRLPPQqiEKNLSDLIDLvPsLCEDLLSSVDqPLkiArDkvV gkdyl CAPB_DICDI : 10- 55: qlscc LDLmRRLPPSqiEDNLAGLLDLvPdLTEDLLSSIDqPLkvAyDavS kkdyl CAPB_YEAST : 10- 55: qfdaa LDLlRRLNPTtlQENLNNLIELqPnLAQDLLSSVDvPLstQkDsaD snrey C 3: 126.1620 4( 4) L-D-L-x(0,1)-R-R-L-[NP]-P-[QST]-x(2)-[DEQ]-[DEK]-N-L-[ANST]-[DGN]-L-[IL]-[DE]-L-x-P-x-L-[ACTV]-[DEQ]-D-L-L-S-[ST]-[IV]-D-x-P-L-x(2)-[AQ]-x-D-x(2)-[DSTV] Occurences: 4(4) CAPB_CAEEL : 10- 55: qldca LDLmRRLPPQhcDKNLTDLIDLcPhLVDDLLSTIDqPLkiAaDreT gkqyl CAPB_CHICK : 10- 55: qldca LDLmRRLPPQqiEKNLSDLIDLvPsLCEDLLSSVDqPLkiArDkvV gkdyl CAPB_DICDI : 10- 55: qlscc LDLmRRLPPSqiEDNLAGLLDLvPdLTEDLLSSIDqPLkvAyDavS kkdyl CAPB_YEAST : 10- 55: qfdaa LDLlRRLNPTtlQENLNNLIELqPnLAQDLLSSVDvPLstQkDsaD snrey D 4: 125.0822 4( 4) D-L-x-R-R-L-[NP]-P-[QST]-x(2)-[DEQ]-[DEK]-N-L-[ANST]-[DGN]-L-[IL]-[DE]-L-x-P-x-L-[ACTV]-[DEQ]-D-L-L-S-[ST]-[IV]-D-x-P-L-x(2)-[AQ]-x-D-x(2)-[DSTV]-x(2)-[DQR] Occurences: 4(4) CAPB_CAEEL : 11- 58: ldcal DLmRRLPPQhcDKNLTDLIDLcPhLVDDLLSTIDqPLkiAaDreTgkQ yllcd CAPB_CHICK : 11- 58: ldcal DLmRRLPPQqiEKNLSDLIDLvPsLCEDLLSSVDqPLkiArDkvVgkD yllcd CAPB_DICDI : 11- 58: lsccl DLmRRLPPSqiEDNLAGLLDLvPdLTEDLLSSIDqPLkvAyDavSkkD yllcd CAPB_YEAST : 11- 58: fdaal DLlRRLNPTtlQENLNNLIELqPnLAQDLLSSVDvPLstQkDsaDsnR eylcc E 5: 124.9457 4( 4) L-[EQS]-[DG]-[AGS]-x(2)-P-S-x(2,3)-R-x(2,3)-E-[IV]-x-A-N-[ADEN]-x-F-[DE]-x-Y-x-[DN]-L-Y-[FY]-E-G-G-[IV]-S-S-V-Y-x-W-D-L-[DN]-x-[EGN]-x(2)-[AGN]-[GV] Occurences: 4(4) CAPB_CAEEL : 83- 131: tydpp LEDGqlPSekrRkm-EIeANAaFEsYrDLYFEGGVSSVYfWDLDnGgfAG ivlik CAPB_CAEEL : 83- 131: tydpp LEDGqlPSek-RrkmEIeANAaFEsYrDLYFEGGVSSVYfWDLDnGgfAG ivlik CAPB_CHICK : 83- 131: kydpp LEDGamPSarlRkl-EVeANNaFDqYrDLYFEGGVSSVYlWDLDhGfaGV ilikk CAPB_DICDI : 83- 131: kydpp LSGAcyPSsklRdi-EVqANEiFEiYlNLYFEGGVSSVYcWDLDdNfaAV vlmkk CAPB_YEAST : 89- 137: lspkd LQDSpfPSaplRkl-EIlANDsFDvYrDLYYEGGISSVYlWDLNeEdfNG hdfag F 6: 124.0822 4( 4) D-x(0,1)-L-x(0,1)-R-R-L-[NP]-P-[QST]-x(2)-[DEQ]-[DEK]-N-L-[ANST]-[DGN]-L-[IL]-[DE]-L-x-P-x-L-[ACTV]-[DEQ]-D-L-L-S-[ST]-[IV]-D-x-P-L-x(2)-[AQ]-x-D-x(2)-[DSTV]-x(2)-[DQR] Occurences: 4(4) CAPB_CAEEL : 11- 58: ldcal D-LmRRLPPQhcDKNLTDLIDLcPhLVDDLLSTIDqPLkiAaDreTgkQ yllcd CAPB_CHICK : 11- 58: ldcal D-LmRRLPPQqiEKNLSDLIDLvPsLCEDLLSSVDqPLkiArDkvVgkD yllcd CAPB_DICDI : 11- 58: lsccl D-LmRRLPPSqiEDNLAGLLDLvPdLTEDLLSSIDqPLkvAyDavSkkD yllcd CAPB_YEAST : 11- 58: fdaal DlL-RRLNPTtlQENLNNLIELqPnLAQDLLSSVDvPLstQkDsaDsnR eylcc CAPB_YEAST : 11- 58: fdaal D-LlRRLNPTtlQENLNNLIELqPnLAQDLLSSVDvPLstQkDsaDsnR eylcc G 7: 123.7293 4( 4) P-S-[AES]-x(2)-R-[DK]-[ILM]-E-[IV]-x-A-N-[ADEN]-x-F-[DE]-x-Y-x-[DN]-L-Y-[FY]-E-G-G-[IV]-S-S-V-Y-x-W-D-L-x(3,4)-F-[AN]-[AG]-x(2)-[FL] Occurences: 4(4) CAPB_CAEEL : 89- 134: edgql PSEkrRKMEIeANAaFEsYrDLYFEGGVSSVYfWDLdnggFAGivL ikkeg CAPB_CHICK : 89- 133: edgam PSArlRKLEVeANNaFDqYrDLYFEGGVSSVYlWDLdhg-FAGviL ikkag CAPB_DICDI : 89- 133: sgacy PSSklRDIEVqANEiFEiYlNLYFEGGVSSVYcWDLddn-FAAvvL mkktq CAPB_YEAST : 95- 140: qdspf PSAplRKLEIlANDsFDvYrDLYYEGGISSVYlWDLneedFNGhdF agvvl H 8: 120.4122 5( 4) L-x(0,1)-R-R-L-[NP]-P-[QST]-x(2)-[DEQ]-[DEK]-N-L-[ANST]-[DGN]-L-[IL]-[DE]-L-x-P-x-L-[ACTV]-[DEQ]-D-L-L-S-[ST]-[IV]-D-x-P-L-x(2)-[AQ]-x-D-x(2)-[DSTV]-x(2)-[DQR] Occurences: 5(4) CAPB_CAEEL : 12- 58: dcald LmRRLPPQhcDKNLTDLIDLcPhLVDDLLSTIDqPLkiAaDreTgkQ yllcd CAPB_CHICK : 12- 58: dcald LmRRLPPQqiEKNLSDLIDLvPsLCEDLLSSVDqPLkiArDkvVgkD yllcd CAPB_DICDI : 12- 58: sccld LmRRLPPSqiEDNLAGLLDLvPdLTEDLLSSIDqPLkvAyDavSkkD yllcd CAPB_YEAST : 12- 58: daald LlRRLNPTtlQENLNNLIELqPnLAQDLLSSVDvPLstQkDsaDsnR eylcc CAPB_YEAST : 13- 58: aaldl L-RRLNPTtlQENLNNLIELqPnLAQDLLSSVDvPLstQkDsaDsnR eylcc I 9: 119.5593 4( 4) S-[AES]-x(2)-R-[DK]-[ILM]-E-[IV]-x-A-N-[ADEN]-x-F-[DE]-x-Y-x-[DN]-L-Y-[FY]-E-G-G-[IV]-S-S-V-Y-x-W-D-L-x(3,4)-F-[AN]-[AG]-x(2)-[FL] Occurences: 4(4) CAPB_CAEEL : 90- 134: dgqlp SEkrRKMEIeANAaFEsYrDLYFEGGVSSVYfWDLdnggFAGivL ikkeg CAPB_CHICK : 90- 133: dgamp SArlRKLEVeANNaFDqYrDLYFEGGVSSVYlWDLdhg-FAGviL ikkag CAPB_DICDI : 90- 133: gacyp SSklRDIEVqANEiFEiYlNLYFEGGVSSVYcWDLddn-FAAvvL mkktq CAPB_YEAST : 96- 140: dspfp SAplRKLEIlANDsFDvYrDLYYEGGISSVYlWDLneedFNGhdF agvvl J 10: 114.7221 4( 4) P-S-x(2,3)-R-x(2,3)-E-[IV]-x-A-N-[ADEN]-x-F-[DE]-x-Y-x-[DN]-L-Y-[FY]-E-G-G-[IV]-S-S-V-Y-x-W-D-L-[DN]-x-[EGN]-x(2)-[AGN]-[GV]-x(2)-[FILM] Occurences: 4(4) CAPB_CAEEL : 89- 134: edgql PSekrRkm-EIeANAaFEsYrDLYFEGGVSSVYfWDLDnGgfAGivL ikkeg CAPB_CAEEL : 89- 134: edgql PSek-RrkmEIeANAaFEsYrDLYFEGGVSSVYfWDLDnGgfAGivL ikkeg CAPB_CHICK : 89- 134: edgam PSarlRkl-EVeANNaFDqYrDLYFEGGVSSVYlWDLDhGfaGVilI kkagd CAPB_DICDI : 89- 134: sgacy PSsklRdi-EVqANEiFEiYlNLYFEGGVSSVYcWDLDdNfaAVvlM kktqd CAPB_YEAST : 95- 140: qdspf PSaplRkl-EIlANDsFDvYrDLYYEGGISSVYlWDLNeEdfNGhdF agvvl K 11: 113.5629 4( 4) R-x-L-x-P-[QST]-x(2)-[DEQ]-[DEK]-N-L-[ANST]-[DGN]-L-[IL]-[DE]-L-x-P-x-L-[ACTV]-[DEQ]-D-L-L-S-[ST]-[IV]-D-x-P-L-x(2)-[AQ]-x-D-x(2)-[DSTV]-x(2)-[DQR]-x(2)-L Occurences: 4(4) CAPB_CAEEL : 14- 61: aldlm RrLpPQhcDKNLTDLIDLcPhLVDDLLSTIDqPLkiAaDreTgkQylL cdynr CAPB_CHICK : 14- 61: aldlm RrLpPQqiEKNLSDLIDLvPsLCEDLLSSVDqPLkiArDkvVgkDylL cdynr CAPB_DICDI : 14- 61: cldlm RrLpPSqiEDNLAGLLDLvPdLTEDLLSSIDqPLkvAyDavSkkDylL cdynr CAPB_YEAST : 14- 61: aldll RrLnPTtlQENLNNLIELqPnLAQDLLSSVDvPLstQkDsaDsnReyL ccdyn L 12: 112.7674 4( 4) R-[DK]-[ILM]-E-[IV]-x-A-N-[ADEN]-x-F-[DE]-x-Y-x-[DN]-L-Y-[FY]-E-G-G-[IV]-S-S-V-Y-x-W-D-L-x(3,4)-F-[AN]-[AG]-x(2)-[FL] Occurences: 4(4) CAPB_CAEEL : 94- 134: psekr RKMEIeANAaFEsYrDLYFEGGVSSVYfWDLdnggFAGivL ikkeg CAPB_CHICK : 94- 133: psarl RKLEVeANNaFDqYrDLYFEGGVSSVYlWDLdhg-FAGviL ikkag CAPB_DICDI : 94- 133: psskl RDIEVqANEiFEiYlNLYFEGGVSSVYcWDLddn-FAAvvL mkktq CAPB_YEAST : 100- 140: psapl RKLEIlANDsFDvYrDLYYEGGISSVYlWDLneedFNGhdF agvvl M 13: 106.1576 5( 4) R-x(2,3)-E-[IV]-x-A-N-[ADEN]-x-F-[DE]-x-Y-x-[DN]-L-Y-[FY]-E-G-G-[IV]-S-S-V-Y-x-W-D-L-x(3,4)-F-[AN]-[AG]-x(2)-[FL] Occurences: 5(4) CAPB_CAEEL : 93- 134: lpsek RrkmEIeANAaFEsYrDLYFEGGVSSVYfWDLdnggFAGivL ikkeg CAPB_CAEEL : 94- 134: psekr Rkm-EIeANAaFEsYrDLYFEGGVSSVYfWDLdnggFAGivL ikkeg CAPB_CHICK : 94- 133: psarl Rkl-EVeANNaFDqYrDLYFEGGVSSVYlWDLdhg-FAGviL ikkag CAPB_DICDI : 94- 133: psskl Rdi-EVqANEiFEiYlNLYFEGGVSSVYcWDLddn-FAAvvL mkktq CAPB_YEAST : 100- 140: psapl Rkl-EIlANDsFDvYrDLYYEGGISSVYlWDLneedFNGhdF agvvl N 14: 102.4876 4( 4) E-[IV]-x-A-N-[ADEN]-x-F-[DE]-x-Y-x-[DN]-L-Y-[FY]-E-G-G-[IV]-S-S-V-Y-x-W-D-L-x(3,4)-F-[AN]-[AG]-x(2)-[FL] Occurences: 4(4) CAPB_CAEEL : 97- 134: krrkm EIeANAaFEsYrDLYFEGGVSSVYfWDLdnggFAGivL ikkeg CAPB_CHICK : 97- 133: rlrkl EVeANNaFDqYrDLYFEGGVSSVYlWDLdhg-FAGviL ikkag CAPB_DICDI : 97- 133: klrdi EVqANEiFEiYlNLYFEGGVSSVYcWDLddn-FAAvvL mkktq CAPB_YEAST : 103- 140: plrkl EIlANDsFDvYrDLYYEGGISSVYlWDLneedFNGhdF agvvl O 15: 102.1061 4( 4) Y-x(0,1)-L-C-x(0,1)-D-Y-N-R-D-[AGI]-D-S-[FY]-R-S-P-W-S-N-x-Y-x-P-[EP]-L-[ES]-[DGP]-x(3)-[PQ]-[DS]-[AES] Occurences: 4(4) CAPB_CAEEL : 59- 91: etgkq YlLC-DYNRDGDSYRSPWSNtYdPPLEDgqlPSE krrkm CAPB_CHICK : 59- 91: vvgkd YlLC-DYNRDGDSYRSPWSNkYdPPLEDgamPSA rlrkl CAPB_DICDI : 59- 91: vskkd YlLC-DYNRDADSYRSPWSNkYdPPLSGacyPSS klrdi CAPB_YEAST : 60- 92: dsnre Y-LCcDYNRDIDSFRSPWSNtYyPELSPkdlQDS pfpsa P 16: 98.9360 4( 4) L-x-C-D-Y-N-R-D-[AGI]-D-S-[FY]-R-S-P-W-S-N-x-Y-x-P-[EP]-L-[ES]-[DGP]-x(3)-[PQ]-[DS]-[AES] Occurences: 4(4) CAPB_CAEEL : 60- 91: tgkqy LlCDYNRDGDSYRSPWSNtYdPPLEDgqlPSE krrkm CAPB_CHICK : 60- 91: vgkdy LlCDYNRDGDSYRSPWSNkYdPPLEDgamPSA rlrkl CAPB_DICDI : 60- 91: skkdy LlCDYNRDADSYRSPWSNkYdPPLSGacyPSS klrdi CAPB_YEAST : 61- 92: snrey LcCDYNRDIDSFRSPWSNtYyPELSPkdlQDS pfpsa Q 17: 98.4360 4( 4) L-C-x(0,1)-D-Y-N-R-D-[AGI]-D-S-[FY]-R-S-P-W-S-N-x-Y-x-P-[EP]-L-[ES]-[DGP]-x(3)-[PQ]-[DS]-[AES] Occurences: 4(4) CAPB_CAEEL : 61- 91: gkqyl LC-DYNRDGDSYRSPWSNtYdPPLEDgqlPSE krrkm CAPB_CHICK : 61- 91: gkdyl LC-DYNRDGDSYRSPWSNkYdPPLEDgamPSA rlrkl CAPB_DICDI : 61- 91: kkdyl LC-DYNRDADSYRSPWSNkYdPPLSGacyPSS klrdi CAPB_YEAST : 61- 92: snrey LCcDYNRDIDSFRSPWSNtYyPELSPkdlQDS pfpsa R 18: 98.4360 7( 4) L-x(0,1)-C-D-Y-N-R-D-[AGI]-D-S-[FY]-R-S-P-W-S-N-x-Y-x-P-[EP]-L-[ES]-[DGP]-x(3)-[PQ]-[DS]-[AES] Occurences: 7(4) CAPB_CAEEL : 60- 91: tgkqy LlCDYNRDGDSYRSPWSNtYdPPLEDgqlPSE krrkm CAPB_CAEEL : 61- 91: gkqyl L-CDYNRDGDSYRSPWSNtYdPPLEDgqlPSE krrkm CAPB_CHICK : 60- 91: vgkdy LlCDYNRDGDSYRSPWSNkYdPPLEDgamPSA rlrkl CAPB_CHICK : 61- 91: gkdyl L-CDYNRDGDSYRSPWSNkYdPPLEDgamPSA rlrkl CAPB_DICDI : 60- 91: skkdy LlCDYNRDADSYRSPWSNkYdPPLSGacyPSS klrdi CAPB_DICDI : 61- 91: kkdyl L-CDYNRDADSYRSPWSNkYdPPLSGacyPSS klrdi CAPB_YEAST : 61- 92: snrey LcCDYNRDIDSFRSPWSNtYyPELSPkdlQDS pfpsa S 19: 98.2627 6( 4) E-x(0,2)-A-N-[ADEN]-x-F-[DE]-x-Y-x-[DN]-L-Y-[FY]-E-G-G-[IV]-S-S-V-Y-x-W-D-L-x(3,4)-F-[AN]-[AG]-x(2)-[FL] Occurences: 6(4) CAPB_CAEEL : 97- 134: krrkm EieANAaFEsYrDLYFEGGVSSVYfWDLdnggFAGivL ikkeg CAPB_CAEEL : 99- 134: rkmei E--ANAaFEsYrDLYFEGGVSSVYfWDLdnggFAGivL ikkeg CAPB_CHICK : 97- 133: rlrkl EveANNaFDqYrDLYFEGGVSSVYlWDLdhg-FAGviL ikkag CAPB_CHICK : 99- 133: rklev E--ANNaFDqYrDLYFEGGVSSVYlWDLdhg-FAGviL ikkag CAPB_DICDI : 97- 133: klrdi EvqANEiFEiYlNLYFEGGVSSVYcWDLddn-FAAvvL mkktq CAPB_YEAST : 103- 140: plrkl EilANDsFDvYrDLYYEGGISSVYlWDLneedFNGhdF agvvl T 20: 94.7660 4( 4) C-D-Y-N-R-D-[AGI]-D-S-[FY]-R-S-P-W-S-N-x-Y-x-P-[EP]-L-[ES]-[DGP]-x(3)-[PQ]-[DS]-[AES] Occurences: 4(4) CAPB_CAEEL : 62- 91: kqyll CDYNRDGDSYRSPWSNtYdPPLEDgqlPSE krrkm CAPB_CHICK : 62- 91: kdyll CDYNRDGDSYRSPWSNkYdPPLEDgamPSA rlrkl CAPB_DICDI : 62- 91: kdyll CDYNRDADSYRSPWSNkYdPPLSGacyPSS klrdi CAPB_YEAST : 63- 92: reylc CDYNRDIDSFRSPWSNtYyPELSPkdlQDS pfpsa Number of patterns evaluated by Pratt:17832 Total running time: 3 seconds