------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 6 sequences from file F_ACTIN_CAPPING_A_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 6 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename F_ACTIN_CAPPING_A_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CAP2_CHICK 286 CAPA_CAEEL 282 CAPA_CHICK 286 CAPA_DICDI 281 CAPA_XENLA 256 CAPA_YEAST 268 Pratt run started at Thu Feb 6 19:30:56 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 43.8706 6( 6) F-K-A-L-R-R-x-L-P-x(1,3)-T-x(0,2)-K-x(2)-W 2: 39.7005 6( 6) K-A-L-R-R-x-L-P-x(1,3)-T-x(0,2)-K-x(2)-W 3: 39.7005 6( 6) Q-V-x(0,2)-H-Y-x-E-D-G-N-V-x(0,2)-Q 4: 39.7005 6( 6) Q-x(0,2)-V-H-Y-x-E-D-G-N-V-x(0,2)-Q 5: 36.5305 6( 6) V-H-Y-x-E-D-G-N-V-x(0,2)-Q 6: 35.5305 6( 6) A-L-R-R-x-L-P-x(1,3)-T-x(0,2)-K-x(2)-W 7: 33.3604 6( 6) L-R-R-x-L-P-x(2)-R-x-K-x(2)-W 8: 32.3604 6( 6) H-Y-x-E-D-G-N-V-x(0,2)-Q 9: 31.8604 6( 6) D-x(3)-K-x(3,5)-R-x(1,2)-L-P-x(2)-R-x-K-x(2)-W 10: 31.3604 6( 6) L-R-R-x-L-P-x(1,3)-T-x(0,2)-K-x(2)-W 11: 28.1904 6( 6) Y-x-E-D-G-N-V-x(0,2)-Q 12: 27.6904 11( 6) Y-x(0,1)-E-D-G-N-V-x(0,2)-Q 13: 27.1904 6( 6) R-R-x-L-P-x(1,3)-T-x(0,2)-K-x(2)-W 14: 24.0203 6( 6) E-D-G-N-V-x(0,2)-Q 15: 23.0203 6( 6) R-x-L-P-x(1,3)-T-x(0,2)-K-x(2)-W 16: 19.8503 6( 6) D-G-N-V-x(0,2)-Q 17: 19.3503 7( 6) L-x(1,3)-R-x-L-x(0,1)-P-x(2)-R 18: 18.8503 6( 6) L-P-x(1,3)-T-x(0,2)-K-x(2)-W 19: 18.8503 8( 6) G-x(2,4)-Q-V-x(3,5)-E-x-G 20: 16.6802 6( 6) P-x(2)-R-x-K-x(2)-W Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 63.9483 6( 6) D-x-[NT]-x-K-x(3,5)-R-x(1,2)-L-P-[IV]-[NT]-R-[AST]-K-[IM]-[DN]-W-[GNQ]-x-[AIV]-x-[GNST]-x(3)-[AGL]-x-[EK] B 2: 63.7405 6( 6) F-K-A-L-R-R-x-L-P-x(1,3)-T-x(0,2)-K-[IM]-[DN]-W-[GNQ]-x-[AIV]-x-[GNST]-x(3)-[AGL]-x-[EK] C 3: 62.2539 6( 6) L-R-R-x-L-P-[IV]-[NT]-R-[AST]-K-[IM]-[DN]-W-[GNQ]-x-[AIV]-x-[GNST]-x(3)-[AGL]-x-[EK] D 4: 59.5705 6( 6) K-A-L-R-R-x-L-P-x(1,3)-T-x(0,2)-K-[IM]-[DN]-W-[GNQ]-x-[AIV]-x-[GNST]-x(3)-[AGL]-x-[EK] E 5: 58.0839 6( 6) L-x-R-x-L-P-[IV]-[NT]-R-[AST]-K-[IM]-[DN]-W-[GNQ]-x-[AIV]-x-[GNST]-x(3)-[AGL]-x-[EK] F 6: 55.4004 6( 6) A-L-R-R-x-L-P-x(1,3)-T-x(0,2)-K-[IM]-[DN]-W-[GNQ]-x-[AIV]-x-[GNST]-x(3)-[AGL]-x-[EK] G 7: 51.2304 6( 6) L-R-R-x-L-P-x(1,3)-T-x(0,2)-K-[IM]-[DN]-W-[GNQ]-x-[AIV]-x-[GNST]-x(3)-[AGL]-x-[EK] H 8: 47.0603 6( 6) R-R-x-L-P-x(1,3)-T-x(0,2)-K-[IM]-[DN]-W-[GNQ]-x-[AIV]-x-[GNST]-x(3)-[AGL]-x-[EK] I 9: 45.5737 6( 6) P-[IV]-[NT]-R-[AST]-K-[IM]-[DN]-W-[GNQ]-x-[AIV]-x-[GNST]-x(3)-[AGL]-x-[EK] J 10: 42.8903 6( 6) R-x-L-P-x(1,3)-T-x(0,2)-K-[IM]-[DN]-W-[GNQ]-x-[AIV]-x-[GNST]-x(3)-[AGL]-x-[EK] K 11: 42.8850 6( 6) Q-V-x(0,2)-H-Y-[FY]-E-D-G-N-V-x(0,2)-Q L 12: 42.8850 6( 6) Q-x(0,2)-V-H-Y-[FY]-E-D-G-N-V-x(0,2)-Q M 13: 39.7150 6( 6) V-H-Y-[FY]-E-D-G-N-V-x(0,2)-Q N 14: 39.7005 6( 6) F-K-A-L-R-R-x-L-P-x(1,3)-T-x(0,2)-K O 15: 38.7202 6( 6) L-P-x(1,3)-T-x(0,2)-K-[IM]-[DN]-W-[GNQ]-x-[AIV]-x-[GNST]-x(3)-[AGL]-x-[EK] P 16: 35.5449 6( 6) H-Y-[FY]-E-D-G-N-V-x(0,2)-Q Q 17: 35.5305 6( 6) K-A-L-R-R-x-L-P-x(1,3)-T-x(0,2)-K R 18: 32.3604 6( 6) H-Y-x-E-D-G-N-V-x(0,2)-Q S 19: 31.3749 6( 6) Y-[FY]-E-D-G-N-V-x(0,2)-Q T 20: 31.3604 6( 6) A-L-R-R-x-L-P-x(1,3)-T-x(0,2)-K Best patterns with alignements: fitness hits(seqs) Pattern A 1: 63.9483 6( 6) D-x-[NT]-x-K-x(3,5)-R-x(1,2)-L-P-[IV]-[NT]-R-[AST]-K-[IM]-[DN]-W-[GNQ]-x-[AIV]-x-[GNST]-x(3)-[AGL]-x-[EK] Occurences: 6(6) CAP2_CHICK : 252- 282: yqtms DtTfKalr--Rq-LPVTRTKIDWNkIlSykiGkE mqna CAPA_CAEEL : 250- 280: yanms DtTfKalr--Rq-LPVTRAKMDWNkAqTyriGqE mk CAPA_CHICK : 252- 282: yqtms DtTfKalr--Rq-LPVTRTKIDWNkIlSykiGkE mqna CAPA_DICDI : 248- 278: ystmg DtTfKalr--Ra-LPINRTKINWQkVkNfkiAnE lnk CAPA_XENLA : 222- 252: yqtms DtTfKalr--Rq-LPVTRTKIDWNkIlSykiGkE mqna CAPA_YEAST : 229- 262: dlsff DlNeKqfkalRrrLPVTRSKINWGsAiGsyrLgK naaeg B 2: 63.7405 6( 6) F-K-A-L-R-R-x-L-P-x(1,3)-T-x(0,2)-K-[IM]-[DN]-W-[GNQ]-x-[AIV]-x-[GNST]-x(3)-[AGL]-x-[EK] Occurences: 6(6) CAP2_CHICK : 255- 282: msdtt FKALRRqLPvtrT--KIDWNkIlSykiGkE mqna CAP2_CHICK : 255- 282: msdtt FKALRRqLPv--TrtKIDWNkIlSykiGkE mqna CAPA_CAEEL : 253- 280: msdtt FKALRRqLPv--TraKMDWNkAqTyriGqE mk CAPA_CHICK : 255- 282: msdtt FKALRRqLPvtrT--KIDWNkIlSykiGkE mqna CAPA_CHICK : 255- 282: msdtt FKALRRqLPv--TrtKIDWNkIlSykiGkE mqna CAPA_DICDI : 251- 278: mgdtt FKALRRaLPinrT--KINWQkVkNfkiAnE lnk CAPA_XENLA : 225- 252: msdtt FKALRRqLPvtrT--KIDWNkIlSykiGkE mqna CAPA_XENLA : 225- 252: msdtt FKALRRqLPv--TrtKIDWNkIlSykiGkE mqna CAPA_YEAST : 235- 262: lnekq FKALRRrLPv--TrsKINWGsAiGsyrLgK naaeg C 3: 62.2539 6( 6) L-R-R-x-L-P-[IV]-[NT]-R-[AST]-K-[IM]-[DN]-W-[GNQ]-x-[AIV]-x-[GNST]-x(3)-[AGL]-x-[EK] Occurences: 6(6) CAP2_CHICK : 258- 282: ttfka LRRqLPVTRTKIDWNkIlSykiGkE mqna CAPA_CAEEL : 256- 280: ttfka LRRqLPVTRAKMDWNkAqTyriGqE mk CAPA_CHICK : 258- 282: ttfka LRRqLPVTRTKIDWNkIlSykiGkE mqna CAPA_DICDI : 254- 278: ttfka LRRaLPINRTKINWQkVkNfkiAnE lnk CAPA_XENLA : 228- 252: ttfka LRRqLPVTRTKIDWNkIlSykiGkE mqna CAPA_YEAST : 238- 262: kqfka LRRrLPVTRSKINWGsAiGsyrLgK naaeg D 4: 59.5705 6( 6) K-A-L-R-R-x-L-P-x(1,3)-T-x(0,2)-K-[IM]-[DN]-W-[GNQ]-x-[AIV]-x-[GNST]-x(3)-[AGL]-x-[EK] Occurences: 6(6) CAP2_CHICK : 256- 282: sdttf KALRRqLPvtrT--KIDWNkIlSykiGkE mqna CAP2_CHICK : 256- 282: sdttf KALRRqLPv--TrtKIDWNkIlSykiGkE mqna CAPA_CAEEL : 254- 280: sdttf KALRRqLPv--TraKMDWNkAqTyriGqE mk CAPA_CHICK : 256- 282: sdttf KALRRqLPvtrT--KIDWNkIlSykiGkE mqna CAPA_CHICK : 256- 282: sdttf KALRRqLPv--TrtKIDWNkIlSykiGkE mqna CAPA_DICDI : 252- 278: gdttf KALRRaLPinrT--KINWQkVkNfkiAnE lnk CAPA_XENLA : 226- 252: sdttf KALRRqLPvtrT--KIDWNkIlSykiGkE mqna CAPA_XENLA : 226- 252: sdttf KALRRqLPv--TrtKIDWNkIlSykiGkE mqna CAPA_YEAST : 236- 262: nekqf KALRRrLPv--TrsKINWGsAiGsyrLgK naaeg E 5: 58.0839 6( 6) L-x-R-x-L-P-[IV]-[NT]-R-[AST]-K-[IM]-[DN]-W-[GNQ]-x-[AIV]-x-[GNST]-x(3)-[AGL]-x-[EK] Occurences: 6(6) CAP2_CHICK : 258- 282: ttfka LrRqLPVTRTKIDWNkIlSykiGkE mqna CAPA_CAEEL : 256- 280: ttfka LrRqLPVTRAKMDWNkAqTyriGqE mk CAPA_CHICK : 258- 282: ttfka LrRqLPVTRTKIDWNkIlSykiGkE mqna CAPA_DICDI : 254- 278: ttfka LrRaLPINRTKINWQkVkNfkiAnE lnk CAPA_XENLA : 228- 252: ttfka LrRqLPVTRTKIDWNkIlSykiGkE mqna CAPA_YEAST : 238- 262: kqfka LrRrLPVTRSKINWGsAiGsyrLgK naaeg F 6: 55.4004 6( 6) A-L-R-R-x-L-P-x(1,3)-T-x(0,2)-K-[IM]-[DN]-W-[GNQ]-x-[AIV]-x-[GNST]-x(3)-[AGL]-x-[EK] Occurences: 6(6) CAP2_CHICK : 257- 282: dttfk ALRRqLPvtrT--KIDWNkIlSykiGkE mqna CAP2_CHICK : 257- 282: dttfk ALRRqLPv--TrtKIDWNkIlSykiGkE mqna CAPA_CAEEL : 255- 280: dttfk ALRRqLPv--TraKMDWNkAqTyriGqE mk CAPA_CHICK : 257- 282: dttfk ALRRqLPvtrT--KIDWNkIlSykiGkE mqna CAPA_CHICK : 257- 282: dttfk ALRRqLPv--TrtKIDWNkIlSykiGkE mqna CAPA_DICDI : 253- 278: dttfk ALRRaLPinrT--KINWQkVkNfkiAnE lnk CAPA_XENLA : 227- 252: dttfk ALRRqLPvtrT--KIDWNkIlSykiGkE mqna CAPA_XENLA : 227- 252: dttfk ALRRqLPv--TrtKIDWNkIlSykiGkE mqna CAPA_YEAST : 237- 262: ekqfk ALRRrLPv--TrsKINWGsAiGsyrLgK naaeg G 7: 51.2304 6( 6) L-R-R-x-L-P-x(1,3)-T-x(0,2)-K-[IM]-[DN]-W-[GNQ]-x-[AIV]-x-[GNST]-x(3)-[AGL]-x-[EK] Occurences: 6(6) CAP2_CHICK : 258- 282: ttfka LRRqLPvtrT--KIDWNkIlSykiGkE mqna CAP2_CHICK : 258- 282: ttfka LRRqLPv--TrtKIDWNkIlSykiGkE mqna CAPA_CAEEL : 256- 280: ttfka LRRqLPv--TraKMDWNkAqTyriGqE mk CAPA_CHICK : 258- 282: ttfka LRRqLPvtrT--KIDWNkIlSykiGkE mqna CAPA_CHICK : 258- 282: ttfka LRRqLPv--TrtKIDWNkIlSykiGkE mqna CAPA_DICDI : 254- 278: ttfka LRRaLPinrT--KINWQkVkNfkiAnE lnk CAPA_XENLA : 228- 252: ttfka LRRqLPvtrT--KIDWNkIlSykiGkE mqna CAPA_XENLA : 228- 252: ttfka LRRqLPv--TrtKIDWNkIlSykiGkE mqna CAPA_YEAST : 238- 262: kqfka LRRrLPv--TrsKINWGsAiGsyrLgK naaeg H 8: 47.0603 6( 6) R-R-x-L-P-x(1,3)-T-x(0,2)-K-[IM]-[DN]-W-[GNQ]-x-[AIV]-x-[GNST]-x(3)-[AGL]-x-[EK] Occurences: 6(6) CAP2_CHICK : 259- 282: tfkal RRqLPvtrT--KIDWNkIlSykiGkE mqna CAP2_CHICK : 259- 282: tfkal RRqLPv--TrtKIDWNkIlSykiGkE mqna CAPA_CAEEL : 257- 280: tfkal RRqLPv--TraKMDWNkAqTyriGqE mk CAPA_CHICK : 259- 282: tfkal RRqLPvtrT--KIDWNkIlSykiGkE mqna CAPA_CHICK : 259- 282: tfkal RRqLPv--TrtKIDWNkIlSykiGkE mqna CAPA_DICDI : 255- 278: tfkal RRaLPinrT--KINWQkVkNfkiAnE lnk CAPA_XENLA : 229- 252: tfkal RRqLPvtrT--KIDWNkIlSykiGkE mqna CAPA_XENLA : 229- 252: tfkal RRqLPv--TrtKIDWNkIlSykiGkE mqna CAPA_YEAST : 239- 262: qfkal RRrLPv--TrsKINWGsAiGsyrLgK naaeg I 9: 45.5737 6( 6) P-[IV]-[NT]-R-[AST]-K-[IM]-[DN]-W-[GNQ]-x-[AIV]-x-[GNST]-x(3)-[AGL]-x-[EK] Occurences: 6(6) CAP2_CHICK : 263- 282: lrrql PVTRTKIDWNkIlSykiGkE mqna CAPA_CAEEL : 261- 280: lrrql PVTRAKMDWNkAqTyriGqE mk CAPA_CHICK : 263- 282: lrrql PVTRTKIDWNkIlSykiGkE mqna CAPA_DICDI : 259- 278: lrral PINRTKINWQkVkNfkiAnE lnk CAPA_XENLA : 233- 252: lrrql PVTRTKIDWNkIlSykiGkE mqna CAPA_YEAST : 243- 262: lrrrl PVTRSKINWGsAiGsyrLgK naaeg J 10: 42.8903 6( 6) R-x-L-P-x(1,3)-T-x(0,2)-K-[IM]-[DN]-W-[GNQ]-x-[AIV]-x-[GNST]-x(3)-[AGL]-x-[EK] Occurences: 6(6) CAP2_CHICK : 260- 282: fkalr RqLPvtrT--KIDWNkIlSykiGkE mqna CAP2_CHICK : 260- 282: fkalr RqLPv--TrtKIDWNkIlSykiGkE mqna CAPA_CAEEL : 258- 280: fkalr RqLPv--TraKMDWNkAqTyriGqE mk CAPA_CHICK : 260- 282: fkalr RqLPvtrT--KIDWNkIlSykiGkE mqna CAPA_CHICK : 260- 282: fkalr RqLPv--TrtKIDWNkIlSykiGkE mqna CAPA_DICDI : 256- 278: fkalr RaLPinrT--KINWQkVkNfkiAnE lnk CAPA_XENLA : 230- 252: fkalr RqLPvtrT--KIDWNkIlSykiGkE mqna CAPA_XENLA : 230- 252: fkalr RqLPv--TrtKIDWNkIlSykiGkE mqna CAPA_YEAST : 240- 262: fkalr RrLPv--TrsKINWGsAiGsyrLgK naaeg K 11: 42.8850 6( 6) Q-V-x(0,2)-H-Y-[FY]-E-D-G-N-V-x(0,2)-Q Occurences: 6(6) CAP2_CHICK : 195- 205: gilki QV--HYYEDGNV--Q lvshk CAPA_CAEEL : 192- 202: gkils QV--HYYEDGNV--Q lfsek CAPA_CHICK : 195- 205: avlki QV--HYYEDGNV--Q lvshk CAPA_DICDI : 189- 201: sngkv QVnvHYFEDGNV--Q lntvt CAPA_XENLA : 165- 175: gvlki QV--HYYEDGNV--Q lvshk CAPA_YEAST : 183- 195: gqist QV--HYYEDGNVsfQ sgkdi L 12: 42.8850 6( 6) Q-x(0,2)-V-H-Y-[FY]-E-D-G-N-V-x(0,2)-Q Occurences: 6(6) CAP2_CHICK : 195- 205: gilki Q--VHYYEDGNV--Q lvshk CAPA_CAEEL : 192- 202: gkils Q--VHYYEDGNV--Q lfsek CAPA_CHICK : 195- 205: avlki Q--VHYYEDGNV--Q lvshk CAPA_DICDI : 189- 201: sngkv QvnVHYFEDGNV--Q lntvt CAPA_XENLA : 165- 175: gvlki Q--VHYYEDGNV--Q lvshk CAPA_YEAST : 183- 195: gqist Q--VHYYEDGNVsfQ sgkdi M 13: 39.7150 6( 6) V-H-Y-[FY]-E-D-G-N-V-x(0,2)-Q Occurences: 6(6) CAP2_CHICK : 196- 205: ilkiq VHYYEDGNV--Q lvshk CAPA_CAEEL : 193- 202: kilsq VHYYEDGNV--Q lfsek CAPA_CHICK : 196- 205: vlkiq VHYYEDGNV--Q lvshk CAPA_DICDI : 192- 201: kvqvn VHYFEDGNV--Q lntvt CAPA_XENLA : 166- 175: vlkiq VHYYEDGNV--Q lvshk CAPA_YEAST : 184- 195: qistq VHYYEDGNVsfQ sgkdi N 14: 39.7005 6( 6) F-K-A-L-R-R-x-L-P-x(1,3)-T-x(0,2)-K Occurences: 6(6) CAP2_CHICK : 255- 268: msdtt FKALRRqLPvtrT--K idwnk CAP2_CHICK : 255- 268: msdtt FKALRRqLPv--TrtK idwnk CAPA_CAEEL : 253- 266: msdtt FKALRRqLPv--TraK mdwnk CAPA_CHICK : 255- 268: msdtt FKALRRqLPvtrT--K idwnk CAPA_CHICK : 255- 268: msdtt FKALRRqLPv--TrtK idwnk CAPA_DICDI : 251- 264: mgdtt FKALRRaLPinrT--K inwqk CAPA_XENLA : 225- 238: msdtt FKALRRqLPvtrT--K idwnk CAPA_XENLA : 225- 238: msdtt FKALRRqLPv--TrtK idwnk CAPA_YEAST : 235- 248: lnekq FKALRRrLPv--TrsK inwgs O 15: 38.7202 6( 6) L-P-x(1,3)-T-x(0,2)-K-[IM]-[DN]-W-[GNQ]-x-[AIV]-x-[GNST]-x(3)-[AGL]-x-[EK] Occurences: 6(6) CAP2_CHICK : 262- 282: alrrq LPvtrT--KIDWNkIlSykiGkE mqna CAP2_CHICK : 262- 282: alrrq LPv--TrtKIDWNkIlSykiGkE mqna CAPA_CAEEL : 260- 280: alrrq LPv--TraKMDWNkAqTyriGqE mk CAPA_CHICK : 262- 282: alrrq LPvtrT--KIDWNkIlSykiGkE mqna CAPA_CHICK : 262- 282: alrrq LPv--TrtKIDWNkIlSykiGkE mqna CAPA_DICDI : 258- 278: alrra LPinrT--KINWQkVkNfkiAnE lnk CAPA_XENLA : 232- 252: alrrq LPvtrT--KIDWNkIlSykiGkE mqna CAPA_XENLA : 232- 252: alrrq LPv--TrtKIDWNkIlSykiGkE mqna CAPA_YEAST : 242- 262: alrrr LPv--TrsKINWGsAiGsyrLgK naaeg P 16: 35.5449 6( 6) H-Y-[FY]-E-D-G-N-V-x(0,2)-Q Occurences: 6(6) CAP2_CHICK : 197- 205: lkiqv HYYEDGNV--Q lvshk CAPA_CAEEL : 194- 202: ilsqv HYYEDGNV--Q lfsek CAPA_CHICK : 197- 205: lkiqv HYYEDGNV--Q lvshk CAPA_DICDI : 193- 201: vqvnv HYFEDGNV--Q lntvt CAPA_XENLA : 167- 175: lkiqv HYYEDGNV--Q lvshk CAPA_YEAST : 185- 195: istqv HYYEDGNVsfQ sgkdi Q 17: 35.5305 6( 6) K-A-L-R-R-x-L-P-x(1,3)-T-x(0,2)-K Occurences: 6(6) CAP2_CHICK : 256- 268: sdttf KALRRqLPvtrT--K idwnk CAP2_CHICK : 256- 268: sdttf KALRRqLPv--TrtK idwnk CAPA_CAEEL : 254- 266: sdttf KALRRqLPv--TraK mdwnk CAPA_CHICK : 256- 268: sdttf KALRRqLPvtrT--K idwnk CAPA_CHICK : 256- 268: sdttf KALRRqLPv--TrtK idwnk CAPA_DICDI : 252- 264: gdttf KALRRaLPinrT--K inwqk CAPA_XENLA : 226- 238: sdttf KALRRqLPvtrT--K idwnk CAPA_XENLA : 226- 238: sdttf KALRRqLPv--TrtK idwnk CAPA_YEAST : 236- 248: nekqf KALRRrLPv--TrsK inwgs R 18: 32.3604 6( 6) H-Y-x-E-D-G-N-V-x(0,2)-Q Occurences: 6(6) CAP2_CHICK : 197- 205: lkiqv HYyEDGNV--Q lvshk CAPA_CAEEL : 194- 202: ilsqv HYyEDGNV--Q lfsek CAPA_CHICK : 197- 205: lkiqv HYyEDGNV--Q lvshk CAPA_DICDI : 193- 201: vqvnv HYfEDGNV--Q lntvt CAPA_XENLA : 167- 175: lkiqv HYyEDGNV--Q lvshk CAPA_YEAST : 185- 195: istqv HYyEDGNVsfQ sgkdi S 19: 31.3749 6( 6) Y-[FY]-E-D-G-N-V-x(0,2)-Q Occurences: 6(6) CAP2_CHICK : 198- 205: kiqvh YYEDGNV--Q lvshk CAPA_CAEEL : 195- 202: lsqvh YYEDGNV--Q lfsek CAPA_CHICK : 198- 205: kiqvh YYEDGNV--Q lvshk CAPA_DICDI : 194- 201: qvnvh YFEDGNV--Q lntvt CAPA_XENLA : 168- 175: kiqvh YYEDGNV--Q lvshk CAPA_YEAST : 186- 195: stqvh YYEDGNVsfQ sgkdi T 20: 31.3604 6( 6) A-L-R-R-x-L-P-x(1,3)-T-x(0,2)-K Occurences: 6(6) CAP2_CHICK : 257- 268: dttfk ALRRqLPvtrT--K idwnk CAP2_CHICK : 257- 268: dttfk ALRRqLPv--TrtK idwnk CAPA_CAEEL : 255- 266: dttfk ALRRqLPv--TraK mdwnk CAPA_CHICK : 257- 268: dttfk ALRRqLPvtrT--K idwnk CAPA_CHICK : 257- 268: dttfk ALRRqLPv--TrtK idwnk CAPA_DICDI : 253- 264: dttfk ALRRaLPinrT--K inwqk CAPA_XENLA : 227- 238: dttfk ALRRqLPvtrT--K idwnk CAPA_XENLA : 227- 238: dttfk ALRRqLPv--TrtK idwnk CAPA_YEAST : 237- 248: ekqfk ALRRrLPv--TrsK inwgs Number of patterns evaluated by Pratt:5344 Total running time: 2 seconds