------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 12 sequences from file FTSZ_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 12 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename FTSZ_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: FTSZ_ANASP 428 FTSZ_BACSU 382 FTSZ_BORBU 87 FTSZ_ECOLI 383 FTSZ_HAEIN 421 FTSZ_MICLU 170 FTSZ_STAAU 390 FTSZ_STRCO 399 FTSZ_STRGR 407 FTSZ_WOLSP 398 FTZ1_RHIME 590 FTZ2_RHIME 345 Pratt run started at Thu Feb 6 19:30:45 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 44.8706 12( 12) T-x-G-L-G-A-G-x(2)-P-x(2)-G-x(1,2)-A-A-x(0,1)-E 2: 44.8706 12( 12) G-x(5)-G-L-G-A-G-x(2)-P-x(2)-G-x(1,2)-A-A-x(0,1)-E 3: 40.7005 12( 12) G-L-G-A-G-x(2)-P-x(2)-G-x(1,2)-A-A-x(0,1)-E 4: 36.5305 12( 12) L-G-A-G-x(2)-P-x(2)-G-x(1,2)-A-A-x(0,1)-E 5: 32.3604 12( 12) G-A-G-x(2)-P-x(2)-G-x(1,2)-A-A-x(0,1)-E 6: 28.1904 12( 12) A-G-x(2)-P-x(2)-G-x(1,2)-A-A-x(0,1)-E 7: 25.0203 12( 12) N-T-D-x-Q-A-L 8: 24.0203 14( 12) G-x(0,1)-G-x(1,2)-P-x(2)-G-x(2)-A-A 9: 24.0203 12( 12) G-x(2)-P-x(2)-G-x(1,2)-A-A-x(0,1)-E 10: 20.8503 12( 12) T-D-x-Q-A-L 11: 20.3503 12( 12) T-x(2)-A-P-x(2,3)-A-x(2)-A 12: 19.8503 12( 12) P-x(2)-G-x(1,2)-A-A-x(0,1)-E 13: 19.8503 14( 12) G-x(1,2)-P-x(2)-G-x(1,2)-A-A 14: 19.8503 12( 12) G-G-x(4)-G-x-A-x(1,3)-A 15: 19.8503 21( 12) G-G-G-x(0,1)-G-x(2,3)-A 16: 16.6802 18( 12) V-x(4)-G-x-G-G 17: 16.6802 12( 12) D-x-Q-A-L 18: 16.1802 18( 12) A-D-x-V-x(3,4)-G 19: 16.1802 13( 12) A-x-M-x(3)-T-x(1,2)-G 20: 16.1802 24( 12) G-A-x(2,3)-V-x(3)-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 109.7985 12( 12) N-T-D-[AGL]-Q-A-L-x(2)-[AST]-x-[ACV]-x(3)-[ILMV]-[ADQ]-[ILMV]-G-x(3)-T-x-G-L-G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(2)-A-A-[DEQ]-[DE]-x(2)-[DE]-x-[IL]-x(3)-[IL] B 2: 105.6284 12( 12) T-D-[AGL]-Q-A-L-x(2)-[AST]-x-[ACV]-x(3)-[ILMV]-[ADQ]-[ILMV]-G-x(3)-T-x-G-L-G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(2)-A-A-[DEQ]-[DE]-x(2)-[DE]-x-[IL]-x(3)-[IL] C 3: 104.6980 12( 12) D-[AGL]-Q-A-L-x(2)-[AST]-x-[ACV]-x(3)-[ILMV]-[ADQ]-[ILMV]-G-x(3)-T-x-G-L-G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(2)-A-A-[DEQ]-[DE]-x(2)-[DE]-x-[IL]-x(3)-[IL]-x-[DG] D 4: 78.7066 14( 12) G-x(0,1)-G-x(1,2)-P-[ADEN]-[IV]-G-x(2)-A-A-[DEQ]-[DE]-x(2)-[DE]-x-[IL]-x(3)-[IL]-x-[DG]-[AST]-[DH]-[LM]-x-F-[IV]-[AT]-[AS]-G-x-[AG] E 5: 74.1893 14( 12) G-x(1,2)-P-[ADEN]-[IV]-G-x(1,2)-A-A-[ADEQ]-[DE]-x(2)-[DE]-x-[IL]-x(3)-[IL]-x-[DG]-[AST]-[DH]-[LM]-x-F-[IV]-[AT]-[AS]-G-x-[AG] F 6: 61.9543 12( 12) G-x(3)-T-x-G-L-G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(1,2)-A-A-x(0,1)-E-[DES]-x(2)-[ADEQ] G 7: 57.7842 12( 12) T-x-G-L-G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(1,2)-A-A-x(0,1)-E-[DES]-x(2)-[ADEQ] H 8: 53.6142 12( 12) G-L-G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(1,2)-A-A-x(0,1)-E-[DES]-x(2)-[ADEQ] I 9: 49.4441 12( 12) L-G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(1,2)-A-A-x(0,1)-E-[DES]-x(2)-[ADEQ] J 10: 49.2594 10( 10) G-x(3)-T-x-G-L-G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(1,2)-A K 11: 45.9368 12( 12) T-[GS]-x-A-P-x(2,3)-A-x-[AGIV]-A-[KR]-x(3)-[AGI]-[AL]-[GTV]-x-[ADG]-x(2)-[PT]-[EKR] L 12: 45.2741 12( 12) G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(1,2)-A-A-x(0,1)-E-[DES]-x(2)-[ADEQ] M 13: 45.0894 10( 10) T-x-G-L-G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(1,2)-A N 14: 41.1040 12( 12) A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(1,2)-A-A-x(0,1)-E-[DES]-x(2)-[ADEQ] O 15: 40.9193 10( 10) G-L-G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(1,2)-A P 16: 36.9340 12( 12) G-[AGS]-x-P-[ADEN]-[IV]-G-x(1,2)-A-A-x(0,1)-E-[DES]-x(2)-[ADEQ] Q 17: 36.7493 10( 10) L-G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(1,2)-A R 18: 32.5792 10( 10) G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(1,2)-A S 19: 31.3682 12( 12) G-G-x-[PT]-[EG]-x-G-x-A-x(1,3)-A-x(2)-[AD]-x-[DENRS] T 20: 30.3057 12( 12) V-x-[AGIV]-[AGTV]-x-G-x-G-G-x-[APT]-x(2)-[GN]-x-[AI] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 109.7985 12( 12) N-T-D-[AGL]-Q-A-L-x(2)-[AST]-x-[ACV]-x(3)-[ILMV]-[ADQ]-[ILMV]-G-x(3)-T-x-G-L-G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(2)-A-A-[DEQ]-[DE]-x(2)-[DE]-x-[IL]-x(3)-[IL] Occurences: 12(12) FTSZ_ANASP : 96- 145: efwsi NTDAQALtlAgApsrLQIGqklTrGLGAGGnPAIGqkAAEEsrDeIataL egadl FTSZ_BACSU : 44- 93: eyiav NTDAQALnlSkAevkMQIGaklTrGLGAGAnPEVGkkAAEEskEqIeeaL kgadm FTSZ_BORBU : 25- 74: efiva NTDLQALqtSiApikIALGakvTaGLGAGGkPEIGqaAAEEdiDvIrnhL sgadm FTSZ_ECOLI : 43- 92: effav NTDAQALrkTaVgqtIQIGsgiTkGLGAGAnPEVGrnAADEdrDaLraaL egadm FTSZ_HAEIN : 68- 117: vfyav NTDAQALrkSqVqqtVQIGgetTkGLGAGAnPNIGrkAAEDdqDeIrkmL egadm FTSZ_MICLU : 1- 50: NTDAQALlmSdAdvkLDVGrelTrGLGAGAnPDVGrqAAEDheEeIqevL kgadm FTSZ_STAAU : 44- 93: efiai NTDGQALnlSkAeskIQIGeklTrGLGAGAnPEIGkkAAEEsrEqIedaI qgadm FTSZ_STRCO : 41- 90: efiai NTDAQALlmSdAdvkLDVGrelTrGLGAGAnPAVGrkAAEDhrEeIeevL kgadm FTSZ_STRGR : 41- 90: efiai NTDAQALlmSdAdvkLDVGrelTrGLGAGAnPAVGrkAAEDhrEeIeevL kgadm FTSZ_WOLSP : 47- 96: nfvva NTDAQALekSlCdkkIQLGinlTkGLGAGAlPDVGkgAAEEsiDeImehI kdshm FTZ1_RHIME : 47- 96: dfvva NTDAQALtmTkAeriIQMGvavTeGLGAGSqPEVGraAAEEciDeIidhL qgthm FTZ2_RHIME : 46- 95: dfiaa NTDAQALatSkAerrIQLGaaiTeGLGAGSvPDIGnaAAQEsiDeImdhL ggthm B 2: 105.6284 12( 12) T-D-[AGL]-Q-A-L-x(2)-[AST]-x-[ACV]-x(3)-[ILMV]-[ADQ]-[ILMV]-G-x(3)-T-x-G-L-G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(2)-A-A-[DEQ]-[DE]-x(2)-[DE]-x-[IL]-x(3)-[IL] Occurences: 12(12) FTSZ_ANASP : 97- 145: fwsin TDAQALtlAgApsrLQIGqklTrGLGAGGnPAIGqkAAEEsrDeIataL egadl FTSZ_BACSU : 45- 93: yiavn TDAQALnlSkAevkMQIGaklTrGLGAGAnPEVGkkAAEEskEqIeeaL kgadm FTSZ_BORBU : 26- 74: fivan TDLQALqtSiApikIALGakvTaGLGAGGkPEIGqaAAEEdiDvIrnhL sgadm FTSZ_ECOLI : 44- 92: ffavn TDAQALrkTaVgqtIQIGsgiTkGLGAGAnPEVGrnAADEdrDaLraaL egadm FTSZ_HAEIN : 69- 117: fyavn TDAQALrkSqVqqtVQIGgetTkGLGAGAnPNIGrkAAEDdqDeIrkmL egadm FTSZ_MICLU : 2- 50: n TDAQALlmSdAdvkLDVGrelTrGLGAGAnPDVGrqAAEDheEeIqevL kgadm FTSZ_STAAU : 45- 93: fiain TDGQALnlSkAeskIQIGeklTrGLGAGAnPEIGkkAAEEsrEqIedaI qgadm FTSZ_STRCO : 42- 90: fiain TDAQALlmSdAdvkLDVGrelTrGLGAGAnPAVGrkAAEDhrEeIeevL kgadm FTSZ_STRGR : 42- 90: fiain TDAQALlmSdAdvkLDVGrelTrGLGAGAnPAVGrkAAEDhrEeIeevL kgadm FTSZ_WOLSP : 48- 96: fvvan TDAQALekSlCdkkIQLGinlTkGLGAGAlPDVGkgAAEEsiDeImehI kdshm FTZ1_RHIME : 48- 96: fvvan TDAQALtmTkAeriIQMGvavTeGLGAGSqPEVGraAAEEciDeIidhL qgthm FTZ2_RHIME : 47- 95: fiaan TDAQALatSkAerrIQLGaaiTeGLGAGSvPDIGnaAAQEsiDeImdhL ggthm C 3: 104.6980 12( 12) D-[AGL]-Q-A-L-x(2)-[AST]-x-[ACV]-x(3)-[ILMV]-[ADQ]-[ILMV]-G-x(3)-T-x-G-L-G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(2)-A-A-[DEQ]-[DE]-x(2)-[DE]-x-[IL]-x(3)-[IL]-x-[DG] Occurences: 12(12) FTSZ_ANASP : 98- 147: wsint DAQALtlAgApsrLQIGqklTrGLGAGGnPAIGqkAAEEsrDeIataLeG adlvf FTSZ_BACSU : 46- 95: iavnt DAQALnlSkAevkMQIGaklTrGLGAGAnPEVGkkAAEEskEqIeeaLkG admvf FTSZ_BORBU : 27- 76: ivant DLQALqtSiApikIALGakvTaGLGAGGkPEIGqaAAEEdiDvIrnhLsG admvf FTSZ_ECOLI : 45- 94: favnt DAQALrkTaVgqtIQIGsgiTkGLGAGAnPEVGrnAADEdrDaLraaLeG admvf FTSZ_HAEIN : 70- 119: yavnt DAQALrkSqVqqtVQIGgetTkGLGAGAnPNIGrkAAEDdqDeIrkmLeG admvf FTSZ_MICLU : 3- 52: nt DAQALlmSdAdvkLDVGrelTrGLGAGAnPDVGrqAAEDheEeIqevLkG admvf FTSZ_STAAU : 46- 95: iaint DGQALnlSkAeskIQIGeklTrGLGAGAnPEIGkkAAEEsrEqIedaIqG admvf FTSZ_STRCO : 43- 92: iaint DAQALlmSdAdvkLDVGrelTrGLGAGAnPAVGrkAAEDhrEeIeevLkG admvf FTSZ_STRGR : 43- 92: iaint DAQALlmSdAdvkLDVGrelTrGLGAGAnPAVGrkAAEDhrEeIeevLkG admvf FTSZ_WOLSP : 49- 98: vvant DAQALekSlCdkkIQLGinlTkGLGAGAlPDVGkgAAEEsiDeImehIkD shmlf FTZ1_RHIME : 49- 98: vvant DAQALtmTkAeriIQMGvavTeGLGAGSqPEVGraAAEEciDeIidhLqG thmcf FTZ2_RHIME : 48- 97: iaant DAQALatSkAerrIQLGaaiTeGLGAGSvPDIGnaAAQEsiDeImdhLgG thmcf D 4: 78.7066 14( 12) G-x(0,1)-G-x(1,2)-P-[ADEN]-[IV]-G-x(2)-A-A-[DEQ]-[DE]-x(2)-[DE]-x-[IL]-x(3)-[IL]-x-[DG]-[AST]-[DH]-[LM]-x-F-[IV]-[AT]-[AS]-G-x-[AG] Occurences: 14(12) FTSZ_ANASP : 122- 158: ltrgl GaGgnPAIGqkAAEEsrDeIataLeGADLvFITAGmG ggtgt FTSZ_ANASP : 124- 158: rglga G-Gn-PAIGqkAAEEsrDeIataLeGADLvFITAGmG ggtgt FTSZ_BACSU : 70- 106: ltrgl GaGanPEVGkkAAEEskEqIeeaLkGADMvFVTAGmG ggtgt FTSZ_BORBU : 51- 87: vtagl GaGgkPEIGqaAAEEdiDvIrnhLsGADMvFITAGmA FTSZ_BORBU : 53- 87: aglga G-Gk-PEIGqaAAEEdiDvIrnhLsGADMvFITAGmA FTSZ_ECOLI : 69- 105: itkgl GaGanPEVGrnAADEdrDaLraaLeGADMvFIAAGmG ggtgt FTSZ_HAEIN : 94- 130: ttkgl GaGanPNIGrkAAEDdqDeIrkmLeGADMvFIAAGmG ggtgt FTSZ_MICLU : 27- 63: ltrgl GaGanPDVGrqAAEDheEeIqevLkGADMvFVTAGeG ggtgt FTSZ_STAAU : 70- 106: ltrgl GaGanPEIGkkAAEEsrEqIedaIqGADMvFVTSGmG ggtgt FTSZ_STRCO : 67- 103: ltrgl GaGanPAVGrkAAEDhrEeIeevLkGADMvFVTAGeG ggtgt FTSZ_STRGR : 67- 103: ltrgl GaGanPAVGrkAAEDhrEeIeevLkGADMvFVTAGeG ggtgt FTSZ_WOLSP : 73- 109: ltkgl GaGalPDVGkgAAEEsiDeImehIkDSHMlFITAGmG ggtgt FTZ1_RHIME : 73- 109: vtegl GaGsqPEVGraAAEEciDeIidhLqGTHMcFVTAGmG ggtgt FTZ2_RHIME : 72- 108: itegl GaGsvPDIGnaAAQEsiDeImdhLgGTHMcFVTAGmG ggtgt E 5: 74.1893 14( 12) G-x(1,2)-P-[ADEN]-[IV]-G-x(1,2)-A-A-[ADEQ]-[DE]-x(2)-[DE]-x-[IL]-x(3)-[IL]-x-[DG]-[AST]-[DH]-[LM]-x-F-[IV]-[AT]-[AS]-G-x-[AG] Occurences: 14(12) FTSZ_ANASP : 124- 158: rglga GgnPAIGqkAAEEsrDeIataLeGADLvFITAGmG ggtgt FTSZ_ANASP : 125- 158: glgag Gn-PAIGqkAAEEsrDeIataLeGADLvFITAGmG ggtgt FTSZ_BACSU : 72- 106: rglga GanPEVGkkAAEEskEqIeeaLkGADMvFVTAGmG ggtgt FTSZ_BORBU : 53- 87: aglga GgkPEIGqaAAEEdiDvIrnhLsGADMvFITAGmA FTSZ_BORBU : 54- 87: glgag Gk-PEIGqaAAEEdiDvIrnhLsGADMvFITAGmA FTSZ_ECOLI : 71- 105: kglga GanPEVGrnAADEdrDaLraaLeGADMvFIAAGmG ggtgt FTSZ_HAEIN : 96- 130: kglga GanPNIGrkAAEDdqDeIrkmLeGADMvFIAAGmG ggtgt FTSZ_MICLU : 29- 63: rglga GanPDVGrqAAEDheEeIqevLkGADMvFVTAGeG ggtgt FTSZ_STAAU : 72- 106: rglga GanPEIGkkAAEEsrEqIedaIqGADMvFVTSGmG ggtgt FTSZ_STRCO : 69- 103: rglga GanPAVGrkAAEDhrEeIeevLkGADMvFVTAGeG ggtgt FTSZ_STRGR : 69- 103: rglga GanPAVGrkAAEDhrEeIeevLkGADMvFVTAGeG ggtgt FTSZ_WOLSP : 75- 109: kglga GalPDVGkgAAEEsiDeImehIkDSHMlFITAGmG ggtgt FTZ1_RHIME : 75- 109: eglga GsqPEVGraAAEEciDeIidhLqGTHMcFVTAGmG ggtgt FTZ2_RHIME : 74- 108: eglga GsvPDIGnaAAQEsiDeImdhLgGTHMcFVTAGmG ggtgt F 6: 61.9543 12( 12) G-x(3)-T-x-G-L-G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(1,2)-A-A-x(0,1)-E-[DES]-x(2)-[ADEQ] Occurences: 12(12) FTSZ_ANASP : 114- 139: srlqi GqklTrGLGAGGnPAIGqkAA-EEsrD eiata FTSZ_ANASP : 114- 140: srlqi GqklTrGLGAGGnPAIGqkAAeESrdE iatal FTSZ_BACSU : 62- 87: vkmqi GaklTrGLGAGAnPEVGkkAA-EEskE qieea FTSZ_BACSU : 62- 88: vkmqi GaklTrGLGAGAnPEVGkkAAeESkeQ ieeal FTSZ_BORBU : 43- 68: ikial GakvTaGLGAGGkPEIGqaAA-EEdiD virnh FTSZ_BORBU : 43- 68: ikial GakvTaGLGAGGkPEIGq-AAaEEdiD virnh FTSZ_ECOLI : 61- 87: qtiqi GsgiTkGLGAGAnPEVGrnAAdEDrdA lraal FTSZ_HAEIN : 86- 111: qtvqi GgetTkGLGAGAnPNIGrkAA-EDdqD eirkm FTSZ_MICLU : 19- 44: vkldv GrelTrGLGAGAnPDVGrqAA-EDheE eiqev FTSZ_STAAU : 62- 87: skiqi GeklTrGLGAGAnPEIGkkAA-EEsrE qieda FTSZ_STAAU : 62- 88: skiqi GeklTrGLGAGAnPEIGkkAAeESreQ iedai FTSZ_STRCO : 59- 84: vkldv GrelTrGLGAGAnPAVGrkAA-EDhrE eieev FTSZ_STRGR : 59- 84: vkldv GrelTrGLGAGAnPAVGrkAA-EDhrE eieev FTSZ_WOLSP : 65- 90: kkiql GinlTkGLGAGAlPDVGkgAA-EEsiD eimeh FTSZ_WOLSP : 65- 91: kkiql GinlTkGLGAGAlPDVGkgAAeESidE imehi FTZ1_RHIME : 65- 90: riiqm GvavTeGLGAGSqPEVGraAA-EEciD eiidh FTZ1_RHIME : 65- 90: riiqm GvavTeGLGAGSqPEVGr-AAaEEciD eiidh FTZ2_RHIME : 64- 90: rriql GaaiTeGLGAGSvPDIGnaAAqESidE imdhl G 7: 57.7842 12( 12) T-x-G-L-G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(1,2)-A-A-x(0,1)-E-[DES]-x(2)-[ADEQ] Occurences: 12(12) FTSZ_ANASP : 118- 139: igqkl TrGLGAGGnPAIGqkAA-EEsrD eiata FTSZ_ANASP : 118- 140: igqkl TrGLGAGGnPAIGqkAAeESrdE iatal FTSZ_BACSU : 66- 87: igakl TrGLGAGAnPEVGkkAA-EEskE qieea FTSZ_BACSU : 66- 88: igakl TrGLGAGAnPEVGkkAAeESkeQ ieeal FTSZ_BORBU : 47- 68: lgakv TaGLGAGGkPEIGqaAA-EEdiD virnh FTSZ_BORBU : 47- 68: lgakv TaGLGAGGkPEIGq-AAaEEdiD virnh FTSZ_ECOLI : 65- 87: igsgi TkGLGAGAnPEVGrnAAdEDrdA lraal FTSZ_HAEIN : 90- 111: igget TkGLGAGAnPNIGrkAA-EDdqD eirkm FTSZ_MICLU : 23- 44: vgrel TrGLGAGAnPDVGrqAA-EDheE eiqev FTSZ_STAAU : 66- 87: igekl TrGLGAGAnPEIGkkAA-EEsrE qieda FTSZ_STAAU : 66- 88: igekl TrGLGAGAnPEIGkkAAeESreQ iedai FTSZ_STRCO : 63- 84: vgrel TrGLGAGAnPAVGrkAA-EDhrE eieev FTSZ_STRGR : 63- 84: vgrel TrGLGAGAnPAVGrkAA-EDhrE eieev FTSZ_WOLSP : 69- 90: lginl TkGLGAGAlPDVGkgAA-EEsiD eimeh FTSZ_WOLSP : 69- 91: lginl TkGLGAGAlPDVGkgAAeESidE imehi FTZ1_RHIME : 69- 90: mgvav TeGLGAGSqPEVGraAA-EEciD eiidh FTZ1_RHIME : 69- 90: mgvav TeGLGAGSqPEVGr-AAaEEciD eiidh FTZ2_RHIME : 68- 90: lgaai TeGLGAGSvPDIGnaAAqESidE imdhl H 8: 53.6142 12( 12) G-L-G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(1,2)-A-A-x(0,1)-E-[DES]-x(2)-[ADEQ] Occurences: 12(12) FTSZ_ANASP : 120- 139: qkltr GLGAGGnPAIGqkAA-EEsrD eiata FTSZ_ANASP : 120- 140: qkltr GLGAGGnPAIGqkAAeESrdE iatal FTSZ_BACSU : 68- 87: akltr GLGAGAnPEVGkkAA-EEskE qieea FTSZ_BACSU : 68- 88: akltr GLGAGAnPEVGkkAAeESkeQ ieeal FTSZ_BORBU : 49- 68: akvta GLGAGGkPEIGqaAA-EEdiD virnh FTSZ_BORBU : 49- 68: akvta GLGAGGkPEIGq-AAaEEdiD virnh FTSZ_ECOLI : 67- 87: sgitk GLGAGAnPEVGrnAAdEDrdA lraal FTSZ_HAEIN : 92- 111: gettk GLGAGAnPNIGrkAA-EDdqD eirkm FTSZ_MICLU : 25- 44: reltr GLGAGAnPDVGrqAA-EDheE eiqev FTSZ_STAAU : 68- 87: ekltr GLGAGAnPEIGkkAA-EEsrE qieda FTSZ_STAAU : 68- 88: ekltr GLGAGAnPEIGkkAAeESreQ iedai FTSZ_STRCO : 65- 84: reltr GLGAGAnPAVGrkAA-EDhrE eieev FTSZ_STRGR : 65- 84: reltr GLGAGAnPAVGrkAA-EDhrE eieev FTSZ_WOLSP : 71- 90: inltk GLGAGAlPDVGkgAA-EEsiD eimeh FTSZ_WOLSP : 71- 91: inltk GLGAGAlPDVGkgAAeESidE imehi FTZ1_RHIME : 71- 90: vavte GLGAGSqPEVGraAA-EEciD eiidh FTZ1_RHIME : 71- 90: vavte GLGAGSqPEVGr-AAaEEciD eiidh FTZ2_RHIME : 70- 90: aaite GLGAGSvPDIGnaAAqESidE imdhl I 9: 49.4441 12( 12) L-G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(1,2)-A-A-x(0,1)-E-[DES]-x(2)-[ADEQ] Occurences: 12(12) FTSZ_ANASP : 121- 139: kltrg LGAGGnPAIGqkAA-EEsrD eiata FTSZ_ANASP : 121- 140: kltrg LGAGGnPAIGqkAAeESrdE iatal FTSZ_BACSU : 69- 87: kltrg LGAGAnPEVGkkAA-EEskE qieea FTSZ_BACSU : 69- 88: kltrg LGAGAnPEVGkkAAeESkeQ ieeal FTSZ_BORBU : 50- 68: kvtag LGAGGkPEIGqaAA-EEdiD virnh FTSZ_BORBU : 50- 68: kvtag LGAGGkPEIGq-AAaEEdiD virnh FTSZ_ECOLI : 68- 87: gitkg LGAGAnPEVGrnAAdEDrdA lraal FTSZ_HAEIN : 93- 111: ettkg LGAGAnPNIGrkAA-EDdqD eirkm FTSZ_MICLU : 26- 44: eltrg LGAGAnPDVGrqAA-EDheE eiqev FTSZ_STAAU : 69- 87: kltrg LGAGAnPEIGkkAA-EEsrE qieda FTSZ_STAAU : 69- 88: kltrg LGAGAnPEIGkkAAeESreQ iedai FTSZ_STRCO : 66- 84: eltrg LGAGAnPAVGrkAA-EDhrE eieev FTSZ_STRGR : 66- 84: eltrg LGAGAnPAVGrkAA-EDhrE eieev FTSZ_WOLSP : 72- 90: nltkg LGAGAlPDVGkgAA-EEsiD eimeh FTSZ_WOLSP : 72- 91: nltkg LGAGAlPDVGkgAAeESidE imehi FTZ1_RHIME : 72- 90: avteg LGAGSqPEVGraAA-EEciD eiidh FTZ1_RHIME : 72- 90: avteg LGAGSqPEVGr-AAaEEciD eiidh FTZ2_RHIME : 71- 90: aiteg LGAGSvPDIGnaAAqESidE imdhl J 10: 49.2594 10( 10) G-x(3)-T-x-G-L-G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(1,2)-A Occurences: 10(10) FTSZ_ANASP : 114- 133: srlqi GqklTrGLGAGGnPAIGqkA aeesr FTSZ_BACSU : 62- 81: vkmqi GaklTrGLGAGAnPEVGkkA aeesk FTSZ_BORBU : 43- 62: ikial GakvTaGLGAGGkPEIGqaA aeedi FTSZ_HAEIN : 86- 105: qtvqi GgetTkGLGAGAnPNIGrkA aeddq FTSZ_MICLU : 19- 38: vkldv GrelTrGLGAGAnPDVGrqA aedhe FTSZ_STAAU : 62- 81: skiqi GeklTrGLGAGAnPEIGkkA aeesr FTSZ_STRCO : 59- 78: vkldv GrelTrGLGAGAnPAVGrkA aedhr FTSZ_STRGR : 59- 78: vkldv GrelTrGLGAGAnPAVGrkA aedhr FTSZ_WOLSP : 65- 84: kkiql GinlTkGLGAGAlPDVGkgA aeesi FTZ1_RHIME : 65- 84: riiqm GvavTeGLGAGSqPEVGraA aeeci K 11: 45.9368 12( 12) T-[GS]-x-A-P-x(2,3)-A-x-[AGIV]-A-[KR]-x(3)-[AGI]-[AL]-[GTV]-x-[ADG]-x(2)-[PT]-[EKR] Occurences: 12(12) FTSZ_ANASP : 163- 186: gggtg TGaAPiv-AeVAKemgALTvGvvTR pfvfe FTSZ_BACSU : 111- 134: gggtg TGaAPvi-AqIAKdlgALTvGvvTR pftfe FTSZ_BORBU : 33- 57: lqalq TSiAPikiAlGAKvtaGLGaGgkPE igqaa FTSZ_ECOLI : 110- 133: gggtg TGaAPvv-AeVAKdlgILTvAvvTK pfnfe FTSZ_HAEIN : 135- 158: gggtg TGaAPvv-AkIAKelgILTvAvvTK pftfe FTSZ_MICLU : 68- 91: gggtg TGgAPvv-ArIARslgALTiGvvTR pftfe FTSZ_STAAU : 111- 134: gggtg TGaAPvv-AkIAKemgALTvGvvTR pfsfe FTSZ_STRCO : 108- 131: gggtg TGgAPvv-AnIARslgALTiGvvTR pftfe FTSZ_STRGR : 108- 131: gggtg TGrAPvv-AnIARslgALTiGvvTR pftfe FTSZ_WOLSP : 114- 137: gggtg TGaAPvi-AkAARearAAVkDraPK ekkil FTZ1_RHIME : 114- 137: gggtg TGaAPiv-AqAARnkgILTvGvvTK pfhfe FTZ2_RHIME : 113- 136: gggtg TGaAPvi-AeAARragILTvAvvTK pfsfe L 12: 45.2741 12( 12) G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(1,2)-A-A-x(0,1)-E-[DES]-x(2)-[ADEQ] Occurences: 12(12) FTSZ_ANASP : 122- 139: ltrgl GAGGnPAIGqkAA-EEsrD eiata FTSZ_ANASP : 122- 140: ltrgl GAGGnPAIGqkAAeESrdE iatal FTSZ_BACSU : 70- 87: ltrgl GAGAnPEVGkkAA-EEskE qieea FTSZ_BACSU : 70- 88: ltrgl GAGAnPEVGkkAAeESkeQ ieeal FTSZ_BORBU : 51- 68: vtagl GAGGkPEIGqaAA-EEdiD virnh FTSZ_BORBU : 51- 68: vtagl GAGGkPEIGq-AAaEEdiD virnh FTSZ_ECOLI : 69- 87: itkgl GAGAnPEVGrnAAdEDrdA lraal FTSZ_HAEIN : 94- 111: ttkgl GAGAnPNIGrkAA-EDdqD eirkm FTSZ_MICLU : 27- 44: ltrgl GAGAnPDVGrqAA-EDheE eiqev FTSZ_STAAU : 70- 87: ltrgl GAGAnPEIGkkAA-EEsrE qieda FTSZ_STAAU : 70- 88: ltrgl GAGAnPEIGkkAAeESreQ iedai FTSZ_STRCO : 67- 84: ltrgl GAGAnPAVGrkAA-EDhrE eieev FTSZ_STRGR : 67- 84: ltrgl GAGAnPAVGrkAA-EDhrE eieev FTSZ_WOLSP : 73- 90: ltkgl GAGAlPDVGkgAA-EEsiD eimeh FTSZ_WOLSP : 73- 91: ltkgl GAGAlPDVGkgAAeESidE imehi FTZ1_RHIME : 73- 90: vtegl GAGSqPEVGraAA-EEciD eiidh FTZ1_RHIME : 73- 90: vtegl GAGSqPEVGr-AAaEEciD eiidh FTZ2_RHIME : 72- 90: itegl GAGSvPDIGnaAAqESidE imdhl M 13: 45.0894 10( 10) T-x-G-L-G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(1,2)-A Occurences: 10(10) FTSZ_ANASP : 118- 133: igqkl TrGLGAGGnPAIGqkA aeesr FTSZ_BACSU : 66- 81: igakl TrGLGAGAnPEVGkkA aeesk FTSZ_BORBU : 47- 62: lgakv TaGLGAGGkPEIGqaA aeedi FTSZ_HAEIN : 90- 105: igget TkGLGAGAnPNIGrkA aeddq FTSZ_MICLU : 23- 38: vgrel TrGLGAGAnPDVGrqA aedhe FTSZ_STAAU : 66- 81: igekl TrGLGAGAnPEIGkkA aeesr FTSZ_STRCO : 63- 78: vgrel TrGLGAGAnPAVGrkA aedhr FTSZ_STRGR : 63- 78: vgrel TrGLGAGAnPAVGrkA aedhr FTSZ_WOLSP : 69- 84: lginl TkGLGAGAlPDVGkgA aeesi FTZ1_RHIME : 69- 84: mgvav TeGLGAGSqPEVGraA aeeci N 14: 41.1040 12( 12) A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(1,2)-A-A-x(0,1)-E-[DES]-x(2)-[ADEQ] Occurences: 12(12) FTSZ_ANASP : 123- 139: trglg AGGnPAIGqkAA-EEsrD eiata FTSZ_ANASP : 123- 140: trglg AGGnPAIGqkAAeESrdE iatal FTSZ_BACSU : 71- 87: trglg AGAnPEVGkkAA-EEskE qieea FTSZ_BACSU : 71- 88: trglg AGAnPEVGkkAAeESkeQ ieeal FTSZ_BORBU : 52- 68: taglg AGGkPEIGqaAA-EEdiD virnh FTSZ_BORBU : 52- 68: taglg AGGkPEIGq-AAaEEdiD virnh FTSZ_ECOLI : 70- 87: tkglg AGAnPEVGrnAAdEDrdA lraal FTSZ_HAEIN : 95- 111: tkglg AGAnPNIGrkAA-EDdqD eirkm FTSZ_MICLU : 28- 44: trglg AGAnPDVGrqAA-EDheE eiqev FTSZ_STAAU : 71- 87: trglg AGAnPEIGkkAA-EEsrE qieda FTSZ_STAAU : 71- 88: trglg AGAnPEIGkkAAeESreQ iedai FTSZ_STRCO : 68- 84: trglg AGAnPAVGrkAA-EDhrE eieev FTSZ_STRGR : 68- 84: trglg AGAnPAVGrkAA-EDhrE eieev FTSZ_WOLSP : 74- 90: tkglg AGAlPDVGkgAA-EEsiD eimeh FTSZ_WOLSP : 74- 91: tkglg AGAlPDVGkgAAeESidE imehi FTZ1_RHIME : 74- 90: teglg AGSqPEVGraAA-EEciD eiidh FTZ1_RHIME : 74- 90: teglg AGSqPEVGr-AAaEEciD eiidh FTZ2_RHIME : 73- 90: teglg AGSvPDIGnaAAqESidE imdhl O 15: 40.9193 10( 10) G-L-G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(1,2)-A Occurences: 10(10) FTSZ_ANASP : 120- 133: qkltr GLGAGGnPAIGqkA aeesr FTSZ_BACSU : 68- 81: akltr GLGAGAnPEVGkkA aeesk FTSZ_BORBU : 49- 62: akvta GLGAGGkPEIGqaA aeedi FTSZ_HAEIN : 92- 105: gettk GLGAGAnPNIGrkA aeddq FTSZ_MICLU : 25- 38: reltr GLGAGAnPDVGrqA aedhe FTSZ_STAAU : 68- 81: ekltr GLGAGAnPEIGkkA aeesr FTSZ_STRCO : 65- 78: reltr GLGAGAnPAVGrkA aedhr FTSZ_STRGR : 65- 78: reltr GLGAGAnPAVGrkA aedhr FTSZ_WOLSP : 71- 84: inltk GLGAGAlPDVGkgA aeesi FTZ1_RHIME : 71- 84: vavte GLGAGSqPEVGraA aeeci P 16: 36.9340 12( 12) G-[AGS]-x-P-[ADEN]-[IV]-G-x(1,2)-A-A-x(0,1)-E-[DES]-x(2)-[ADEQ] Occurences: 12(12) FTSZ_ANASP : 124- 139: rglga GGnPAIGqkAA-EEsrD eiata FTSZ_ANASP : 124- 140: rglga GGnPAIGqkAAeESrdE iatal FTSZ_BACSU : 72- 87: rglga GAnPEVGkkAA-EEskE qieea FTSZ_BACSU : 72- 88: rglga GAnPEVGkkAAeESkeQ ieeal FTSZ_BORBU : 53- 68: aglga GGkPEIGqaAA-EEdiD virnh FTSZ_BORBU : 53- 68: aglga GGkPEIGq-AAaEEdiD virnh FTSZ_ECOLI : 71- 87: kglga GAnPEVGrnAAdEDrdA lraal FTSZ_HAEIN : 96- 111: kglga GAnPNIGrkAA-EDdqD eirkm FTSZ_MICLU : 29- 44: rglga GAnPDVGrqAA-EDheE eiqev FTSZ_STAAU : 72- 87: rglga GAnPEIGkkAA-EEsrE qieda FTSZ_STAAU : 72- 88: rglga GAnPEIGkkAAeESreQ iedai FTSZ_STRCO : 69- 84: rglga GAnPAVGrkAA-EDhrE eieev FTSZ_STRGR : 69- 84: rglga GAnPAVGrkAA-EDhrE eieev FTSZ_WOLSP : 75- 90: kglga GAlPDVGkgAA-EEsiD eimeh FTSZ_WOLSP : 75- 91: kglga GAlPDVGkgAAeESidE imehi FTZ1_RHIME : 75- 90: eglga GSqPEVGraAA-EEciD eiidh FTZ1_RHIME : 75- 90: eglga GSqPEVGr-AAaEEciD eiidh FTZ2_RHIME : 74- 90: eglga GSvPDIGnaAAqESidE imdhl Q 17: 36.7493 10( 10) L-G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(1,2)-A Occurences: 10(10) FTSZ_ANASP : 121- 133: kltrg LGAGGnPAIGqkA aeesr FTSZ_BACSU : 69- 81: kltrg LGAGAnPEVGkkA aeesk FTSZ_BORBU : 50- 62: kvtag LGAGGkPEIGqaA aeedi FTSZ_HAEIN : 93- 105: ettkg LGAGAnPNIGrkA aeddq FTSZ_MICLU : 26- 38: eltrg LGAGAnPDVGrqA aedhe FTSZ_STAAU : 69- 81: kltrg LGAGAnPEIGkkA aeesr FTSZ_STRCO : 66- 78: eltrg LGAGAnPAVGrkA aedhr FTSZ_STRGR : 66- 78: eltrg LGAGAnPAVGrkA aedhr FTSZ_WOLSP : 72- 84: nltkg LGAGAlPDVGkgA aeesi FTZ1_RHIME : 72- 84: avteg LGAGSqPEVGraA aeeci R 18: 32.5792 10( 10) G-A-G-[AGS]-x-P-[ADEN]-[IV]-G-x(1,2)-A Occurences: 10(10) FTSZ_ANASP : 122- 133: ltrgl GAGGnPAIGqkA aeesr FTSZ_BACSU : 70- 81: ltrgl GAGAnPEVGkkA aeesk FTSZ_BORBU : 51- 62: vtagl GAGGkPEIGqaA aeedi FTSZ_HAEIN : 94- 105: ttkgl GAGAnPNIGrkA aeddq FTSZ_MICLU : 27- 38: ltrgl GAGAnPDVGrqA aedhe FTSZ_STAAU : 70- 81: ltrgl GAGAnPEIGkkA aeesr FTSZ_STRCO : 67- 78: ltrgl GAGAnPAVGrkA aedhr FTSZ_STRGR : 67- 78: ltrgl GAGAnPAVGrkA aedhr FTSZ_WOLSP : 73- 84: ltkgl GAGAlPDVGkgA aeesi FTZ1_RHIME : 73- 84: vtegl GAGSqPEVGraA aeeci S 19: 31.3682 12( 12) G-G-x-[PT]-[EG]-x-G-x-A-x(1,3)-A-x(2)-[AD]-x-[DENRS] Occurences: 12(12) FTSZ_ANASP : 158- 175: itagm GGgTGtGaApivAevAkE mgalt FTSZ_BACSU : 106- 123: vtagm GGgTGtGaApviAqiAkD lgalt FTSZ_BORBU : 53- 68: aglga GGkPEiGqAa--AeeDiD virnh FTSZ_ECOLI : 105- 122: iaagm GGgTGtGaApvvAevAkD lgilt FTSZ_HAEIN : 130- 147: iaagm GGgTGtGaApvvAkiAkE lgilt FTSZ_MICLU : 63- 80: vtage GGgTGtGgApvvAriArS lgalt FTSZ_STAAU : 106- 123: vtsgm GGgTGtGaApvvAkiAkE mgalt FTSZ_STRCO : 103- 120: vtage GGgTGtGgApvvAniArS lgalt FTSZ_STRGR : 103- 120: vtage GGgTGtGrApvvAniArS lgalt FTSZ_WOLSP : 109- 126: itagm GGgTGtGaApviAkaArE araav FTZ1_RHIME : 109- 126: vtagm GGgTGtGaApivAqaArN kgilt FTZ2_RHIME : 108- 125: vtagm GGgTGtGaApviAeaArR agilt T 20: 30.3057 12( 12) V-x-[AGIV]-[AGTV]-x-G-x-G-G-x-[APT]-x(2)-[GN]-x-[AI] Occurences: 12(12) FTSZ_ANASP : 151- 166: egadl VfITaGmGGgTgtGaA pivae FTSZ_BACSU : 99- 114: kgadm VfVTaGmGGgTgtGaA pviaq FTSZ_BORBU : 46- 61: algak VtAGlGaGGkPeiGqA aaeed FTSZ_ECOLI : 98- 113: egadm VfIAaGmGGgTgtGaA pvvae FTSZ_HAEIN : 123- 138: egadm VfIAaGmGGgTgtGaA pvvak FTSZ_MICLU : 56- 71: kgadm VfVTaGeGGgTgtGgA pvvar FTSZ_STAAU : 99- 114: qgadm VfVTsGmGGgTgtGaA pvvak FTSZ_STRCO : 96- 111: kgadm VfVTaGeGGgTgtGgA pvvan FTSZ_STRGR : 96- 111: kgadm VfVTaGeGGgTgtGrA pvvan FTSZ_WOLSP : 19- 34: hprit VvGVgGaGGnAvnNmI qsnlq FTZ1_RHIME : 19- 34: kprit VfGVgGgGGnAvnNmI taglq FTZ2_RHIME : 18- 33: rpkit ViGVgGgGGnAinNmI aenlq Number of patterns evaluated by Pratt:3641 Total running time: 3 seconds