------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 6 sequences from file FTSW_RODA_SPOVE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 6 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename FTSW_RODA_SPOVE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: FTSW_ECOLI 414 FTSW_HAEIN 394 RODA_ECOLI 370 RODA_HAEIN 371 SP5E_BACSU 366 YWCF_BACSU 393 Pratt run started at Thu Feb 6 19:30:39 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 37.5305 6( 6) P-E-x(2)-T-D-F-I-x(5)-E-x(2)-G-x(2)-G 2: 35.5305 7( 6) L-x(2,4)-P-x(1,3)-T-D-F-I-x(5)-E-x(2)-G-x(2)-G 3: 33.3604 6( 6) E-x(2)-T-D-F-I-x(5)-E-x(2)-G-x(2)-G 4: 32.3604 8( 6) P-x(1,3)-T-D-F-I-x(5)-E-x(2)-G-x(2)-G 5: 29.1904 6( 6) T-D-F-I-x(5)-E-x(2)-G-x(2)-G 6: 27.1904 6( 6) N-x-G-x(3)-G-x(2)-P-x(2)-G-x(2,4)-L-x(3,5)-S 7: 25.0203 6( 6) D-F-I-x(5)-E-x(2)-G-x(2)-G 8: 25.0203 6( 6) W-x(3)-G-x(4)-Q-P-x-E-x(2)-K 9: 23.5203 6( 6) L-x(0,2)-S-Y-G-G-x(0,1)-S 10: 23.5203 8( 6) P-x(2,4)-S-Y-G-G-x(0,1)-S 11: 23.5203 7( 6) L-x(3,5)-S-Y-G-G-x(0,1)-S 12: 23.5203 10( 6) L-x(1,3)-S-Y-G-G-x(0,1)-S 13: 23.0203 6( 6) G-x(3)-G-x(2)-P-x(2)-G-x(2,4)-L-x(3,5)-S 14: 20.8503 6( 6) A-x-G-x-G-x(3)-G-x-G 15: 20.8503 6( 6) G-x(4)-Q-P-x-E-x(2)-K 16: 20.3503 6( 6) S-Y-G-G-x(0,1)-S 17: 19.8503 6( 6) F-I-x(0,1)-F-x(4,5)-E-x(2)-G 18: 19.8503 6( 6) S-x(2)-A-x-G-x(1,2)-G-x(2,3)-G 19: 18.8503 6( 6) G-x(2)-P-x(2)-G-x(2,4)-L-x(3,5)-S 20: 18.8503 7( 6) Q-x(5)-G-x(1,3)-G-x-L-x(1,3)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 95.7449 6( 6) P-E-x(2)-T-D-F-I-[FM]-[AS]-[IV]-[ILM]-[AGS]-E-[ES]-x-G-x-[IV]-G-x(2)-[IL]-[AILV]-[ILMV]-[AIL]-[ILM]-x(2)-[FLV]-[ILV]-[AIL]-x-R-[AGL]-[ILMV]-x-[IL]-[AGI] B 2: 93.7449 7( 6) L-x(2,4)-P-x(1,3)-T-D-F-I-[FM]-[AS]-[IV]-[ILM]-[AGS]-E-[ES]-x-G-x-[IV]-G-x(2)-[IL]-[AILV]-[ILMV]-[AIL]-[ILM]-x(2)-[FLV]-[ILV]-[AIL]-x-R-[AGL]-[ILMV]-x-[IL]-[AGI] C 3: 91.5748 6( 6) E-x(2)-T-D-F-I-[FM]-[AS]-[IV]-[ILM]-[AGS]-E-[ES]-x-G-x-[IV]-G-x(2)-[IL]-[AILV]-[ILMV]-[AIL]-[ILM]-x(2)-[FLV]-[ILV]-[AIL]-x-R-[AGL]-[ILMV]-x-[IL]-[AGI] D 4: 90.5748 8( 6) P-x(1,3)-T-D-F-I-[FM]-[AS]-[IV]-[ILM]-[AGS]-E-[ES]-x-G-x-[IV]-G-x(2)-[IL]-[AILV]-[ILMV]-[AIL]-[ILM]-x(2)-[FLV]-[ILV]-[AIL]-x-R-[AGL]-[ILMV]-x-[IL]-[AGI] E 5: 87.4048 6( 6) T-D-F-I-[FM]-[AS]-[IV]-[ILM]-[AGS]-E-[ES]-x-G-x-[IV]-G-x(2)-[IL]-[AILV]-[ILMV]-[AIL]-[ILM]-x(2)-[FLV]-[ILV]-[AIL]-x-R-[AGL]-[ILMV]-x-[IL]-[AGI] F 6: 83.2347 6( 6) D-F-I-[FM]-[AS]-[IV]-[ILM]-[AGS]-E-[ES]-x-G-x-[IV]-G-x(2)-[IL]-[AILV]-[ILMV]-[AIL]-[ILM]-x(2)-[FLV]-[ILV]-[AIL]-x-R-[AGL]-[ILMV]-x-[IL]-[AGI] G 7: 61.2031 6( 6) W-[FIL]-x-[ILV]-G-x-[FILV]-x-[FI]-Q-P-[AS]-E-[FIL]-x-K-[ILV]-[AGS]-[LMV]-x(3)-[ILV]-A-x(2)-[FIL]-[GNSTV] H 8: 51.6718 6( 6) G-x-[FILV]-x-[FI]-Q-P-[AS]-E-[FIL]-x-K-[ILV]-[AGS]-[LMV]-x(3)-[ILV]-A-x(2)-[FIL]-[GNSTV] I 9: 47.4252 6( 6) N-[ILV]-G-x-[ANV]-x-G-[ILM]-[ILM]-P-[TV]-x-G-x(2,4)-L-x(3,5)-S-x-[GIL]-[GI] J 10: 40.5934 6( 6) G-x-[ANV]-x-G-[ILM]-[ILM]-P-[TV]-x-G-x(2,4)-L-x(3,5)-S-x-[GIL]-[GI] K 11: 33.7725 6( 6) G-[ILM]-[ILM]-P-[TV]-x-G-x(2,4)-L-x(3,5)-S-x-[GIL]-[GI] L 12: 29.9990 6( 6) A-[FIV]-G-x-G-[EG]-[IL]-x-G-x-G M 13: 29.9807 6( 6) Q-[AGS]-x(2)-[AN]-[ILV]-G-x(1,3)-G-x-L-x(1,3)-G-x-[GST] N 14: 29.7491 6( 6) L-x(0,2)-S-Y-G-G-x(0,1)-S-x-[ILV]-x(2)-[LM] O 15: 29.7491 8( 6) P-x(2,4)-S-Y-G-G-x(0,1)-S-x-[ILV]-x(2)-[LM] P 16: 29.7491 7( 6) L-x(3,5)-S-Y-G-G-x(0,1)-S-x-[ILV]-x(2)-[LM] Q 17: 29.7491 10( 6) L-x(1,3)-S-Y-G-G-x(0,1)-S-x-[ILV]-x(2)-[LM] R 18: 26.5790 6( 6) S-Y-G-G-x(0,1)-S-x-[ILV]-x(2)-[LM] S 19: 25.7126 6( 6) S-x(2)-A-x-G-x(1,2)-G-x(2,3)-G-x-[GT]-x(3)-[GQS] T 20: 25.1223 6( 6) F-I-x(0,1)-F-x(4,5)-E-[EPS]-x-G-x-[GIV] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 95.7449 6( 6) P-E-x(2)-T-D-F-I-[FM]-[AS]-[IV]-[ILM]-[AGS]-E-[ES]-x-G-x-[IV]-G-x(2)-[IL]-[AILV]-[ILMV]-[AIL]-[ILM]-x(2)-[FLV]-[ILV]-[AIL]-x-R-[AGL]-[ILMV]-x-[IL]-[AGI] Occurences: 6(6) FTSW_ECOLI : 292- 330: kleyl PEahTDFIFAIIGEElGyVGvvLALLMvfFVAfRAMsIG rkale FTSW_HAEIN : 272- 310: kldyl PEahTDFIMAIIGEEfGfIGilIVILLlgLLIfRAMkIG reslm RODA_ECOLI : 257- 295: qlefl PErhTDFIFAVLAEElGlVGilILLALyiLLImRGLwIA araqt RODA_HAEIN : 258- 296: qlefl PEphTDFIFAVMGEEhGmIGflILMAIylFIIvRGLmIA vnaqt SP5E_BACSU : 258- 296: kffyl PEpqTDFIFAILSEElGfIGgtLILLLfsVLLwRGIrIA lgapd YWCF_BACSU : 275- 313: lkvyv PEstTDFIFSIIGESfGfIGcaIVVIMffFLIyRLVvLI dkihp B 2: 93.7449 7( 6) L-x(2,4)-P-x(1,3)-T-D-F-I-[FM]-[AS]-[IV]-[ILM]-[AGS]-E-[ES]-x-G-x-[IV]-G-x(2)-[IL]-[AILV]-[ILMV]-[AIL]-[ILM]-x(2)-[FLV]-[ILV]-[AIL]-x-R-[AGL]-[ILMV]-x-[IL]-[AGI] Occurences: 7(6) FTSW_ECOLI : 288- 330: nsvqk Leyl-PeahTDFIFAIIGEElGyVGvvLALLMvfFVAfRAMsIG rkale FTSW_HAEIN : 268- 310: nsiqk Ldyl-PeahTDFIMAIIGEEfGfIGilIVILLlgLLIfRAMkIG reslm RODA_ECOLI : 253- 295: gtqsq Lefl-PerhTDFIFAVLAEElGlVGilILLALyiLLImRGLwIA araqt RODA_HAEIN : 254- 296: gtqsq Lefl-PephTDFIFAVMGEEhGmIGflILMAIylFIIvRGLmIA vnaqt RODA_HAEIN : 257- 296: sqlef Lpe--Ph--TDFIFAVMGEEhGmIGflILMAIylFIIvRGLmIA vnaqt SP5E_BACSU : 257- 296: qkffy Lpe--Pq--TDFIFAILSEElGfIGgtLILLLfsVLLwRGIrIA lgapd YWCF_BACSU : 270- 313: ngisn LkvyvPestTDFIFSIIGESfGfIGcaIVVIMffFLIyRLVvLI dkihp C 3: 91.5748 6( 6) E-x(2)-T-D-F-I-[FM]-[AS]-[IV]-[ILM]-[AGS]-E-[ES]-x-G-x-[IV]-G-x(2)-[IL]-[AILV]-[ILMV]-[AIL]-[ILM]-x(2)-[FLV]-[ILV]-[AIL]-x-R-[AGL]-[ILMV]-x-[IL]-[AGI] Occurences: 6(6) FTSW_ECOLI : 293- 330: leylp EahTDFIFAIIGEElGyVGvvLALLMvfFVAfRAMsIG rkale FTSW_HAEIN : 273- 310: ldylp EahTDFIMAIIGEEfGfIGilIVILLlgLLIfRAMkIG reslm RODA_ECOLI : 258- 295: leflp ErhTDFIFAVLAEElGlVGilILLALyiLLImRGLwIA araqt RODA_HAEIN : 259- 296: leflp EphTDFIFAVMGEEhGmIGflILMAIylFIIvRGLmIA vnaqt SP5E_BACSU : 259- 296: ffylp EpqTDFIFAILSEElGfIGgtLILLLfsVLLwRGIrIA lgapd YWCF_BACSU : 276- 313: kvyvp EstTDFIFSIIGESfGfIGcaIVVIMffFLIyRLVvLI dkihp D 4: 90.5748 8( 6) P-x(1,3)-T-D-F-I-[FM]-[AS]-[IV]-[ILM]-[AGS]-E-[ES]-x-G-x-[IV]-G-x(2)-[IL]-[AILV]-[ILMV]-[AIL]-[ILM]-x(2)-[FLV]-[ILV]-[AIL]-x-R-[AGL]-[ILMV]-x-[IL]-[AGI] Occurences: 8(6) FTSW_ECOLI : 292- 330: kleyl PeahTDFIFAIIGEElGyVGvvLALLMvfFVAfRAMsIG rkale FTSW_HAEIN : 272- 310: kldyl PeahTDFIMAIIGEEfGfIGilIVILLlgLLIfRAMkIG reslm RODA_ECOLI : 257- 295: qlefl PerhTDFIFAVLAEElGlVGilILLALyiLLImRGLwIA araqt RODA_HAEIN : 258- 296: qlefl PephTDFIFAVMGEEhGmIGflILMAIylFIIvRGLmIA vnaqt RODA_HAEIN : 260- 296: eflpe Ph--TDFIFAVMGEEhGmIGflILMAIylFIIvRGLmIA vnaqt SP5E_BACSU : 258- 296: kffyl PepqTDFIFAILSEElGfIGgtLILLLfsVLLwRGIrIA lgapd SP5E_BACSU : 260- 296: fylpe Pq--TDFIFAILSEElGfIGgtLILLLfsVLLwRGIrIA lgapd YWCF_BACSU : 275- 313: lkvyv PestTDFIFSIIGESfGfIGcaIVVIMffFLIyRLVvLI dkihp E 5: 87.4048 6( 6) T-D-F-I-[FM]-[AS]-[IV]-[ILM]-[AGS]-E-[ES]-x-G-x-[IV]-G-x(2)-[IL]-[AILV]-[ILMV]-[AIL]-[ILM]-x(2)-[FLV]-[ILV]-[AIL]-x-R-[AGL]-[ILMV]-x-[IL]-[AGI] Occurences: 6(6) FTSW_ECOLI : 296- 330: lpeah TDFIFAIIGEElGyVGvvLALLMvfFVAfRAMsIG rkale FTSW_HAEIN : 276- 310: lpeah TDFIMAIIGEEfGfIGilIVILLlgLLIfRAMkIG reslm RODA_ECOLI : 261- 295: lperh TDFIFAVLAEElGlVGilILLALyiLLImRGLwIA araqt RODA_HAEIN : 262- 296: lpeph TDFIFAVMGEEhGmIGflILMAIylFIIvRGLmIA vnaqt SP5E_BACSU : 262- 296: lpepq TDFIFAILSEElGfIGgtLILLLfsVLLwRGIrIA lgapd YWCF_BACSU : 279- 313: vpest TDFIFSIIGESfGfIGcaIVVIMffFLIyRLVvLI dkihp F 6: 83.2347 6( 6) D-F-I-[FM]-[AS]-[IV]-[ILM]-[AGS]-E-[ES]-x-G-x-[IV]-G-x(2)-[IL]-[AILV]-[ILMV]-[AIL]-[ILM]-x(2)-[FLV]-[ILV]-[AIL]-x-R-[AGL]-[ILMV]-x-[IL]-[AGI] Occurences: 6(6) FTSW_ECOLI : 297- 330: peaht DFIFAIIGEElGyVGvvLALLMvfFVAfRAMsIG rkale FTSW_HAEIN : 277- 310: peaht DFIMAIIGEEfGfIGilIVILLlgLLIfRAMkIG reslm RODA_ECOLI : 262- 295: perht DFIFAVLAEElGlVGilILLALyiLLImRGLwIA araqt RODA_HAEIN : 263- 296: pepht DFIFAVMGEEhGmIGflILMAIylFIIvRGLmIA vnaqt SP5E_BACSU : 263- 296: pepqt DFIFAILSEElGfIGgtLILLLfsVLLwRGIrIA lgapd YWCF_BACSU : 280- 313: pestt DFIFSIIGESfGfIGcaIVVIMffFLIyRLVvLI dkihp G 7: 61.2031 6( 6) W-[FIL]-x-[ILV]-G-x-[FILV]-x-[FI]-Q-P-[AS]-E-[FIL]-x-K-[ILV]-[AGS]-[LMV]-x(3)-[ILV]-A-x(2)-[FIL]-[GNSTV] Occurences: 6(6) FTSW_ECOLI : 138- 165: kgasr WIdLGlLrIQPAELtKLSLfcyIAnyLV rkgde FTSW_HAEIN : 118- 145: ngakr WIsLGiLnFQPAEFaKLALtcfLAsyFT rryde RODA_ECOLI : 102- 129: kgaqr WLdLGiVrFQPSEIaKIAVplmVArfIN rdvcp RODA_HAEIN : 103- 130: kgaqr WLdLGfIrFQPSEIvKLAVplmVAvyLG nrplp SP5E_BACSU : 104- 131: ngsrs WIgVGaFsIQPSEFmKLAMiafLAkfLS ekqkn YWCF_BACSU : 105- 132: kgaks WFrIGrItIQPSEFmKVGLimmLAsvIG kanpk H 8: 51.6718 6( 6) G-x-[FILV]-x-[FI]-Q-P-[AS]-E-[FIL]-x-K-[ILV]-[AGS]-[LMV]-x(3)-[ILV]-A-x(2)-[FIL]-[GNSTV] Occurences: 6(6) FTSW_ECOLI : 142- 165: rwidl GlLrIQPAELtKLSLfcyIAnyLV rkgde FTSW_HAEIN : 122- 145: rwisl GiLnFQPAEFaKLALtcfLAsyFT rryde RODA_ECOLI : 106- 129: rwldl GiVrFQPSEIaKIAVplmVArfIN rdvcp RODA_HAEIN : 107- 130: rwldl GfIrFQPSEIvKLAVplmVAvyLG nrplp SP5E_BACSU : 108- 131: swigv GaFsIQPSEFmKLAMiafLAkfLS ekqkn YWCF_BACSU : 109- 132: swfri GrItIQPSEFmKVGLimmLAsvIG kanpk I 9: 47.4252 6( 6) N-[ILV]-G-x-[ANV]-x-G-[ILM]-[ILM]-P-[TV]-x-G-x(2,4)-L-x(3,5)-S-x-[GIL]-[GI] Occurences: 6(6) FTSW_ECOLI : 359- 381: fqalv NVGaAaGMLPTkGlt--Lpli--SyGG sslli FTSW_HAEIN : 339- 365: fqgfv NLGmAlGMLPTkGltfpLvsyggSsII imsat RODA_ECOLI : 321- 343: vyvfv NIGmVsGILPVvGvp--Lplv--SyGG saliv RODA_ECOLI : 321- 347: vyvfv NIGmVsGILPVvGvplpLvsyggSaLI vlmag RODA_HAEIN : 322- 344: vyvfv NIGmVsGILPVvGvp--Lplf--SyGG tsyva SP5E_BACSU : 322- 344: iqvmi NIGvVtGLIPVtGit--Lpfl--SyGG ssltl YWCF_BACSU : 341- 363: ihtfq NIGmNiGIMPVtGip--Llfv--SyGG sstls J 10: 40.5934 6( 6) G-x-[ANV]-x-G-[ILM]-[ILM]-P-[TV]-x-G-x(2,4)-L-x(3,5)-S-x-[GIL]-[GI] Occurences: 6(6) FTSW_ECOLI : 361- 381: alvnv GaAaGMLPTkGlt--Lpli--SyGG sslli FTSW_HAEIN : 341- 365: gfvnl GmAlGMLPTkGltfpLvsyggSsII imsat RODA_ECOLI : 323- 343: vfvni GmVsGILPVvGvp--Lplv--SyGG saliv RODA_ECOLI : 323- 347: vfvni GmVsGILPVvGvplpLvsyggSaLI vlmag RODA_HAEIN : 324- 344: vfvni GmVsGILPVvGvp--Lplf--SyGG tsyva SP5E_BACSU : 324- 344: vmini GvVtGLIPVtGit--Lpfl--SyGG ssltl YWCF_BACSU : 343- 363: tfqni GmNiGIMPVtGip--Llfv--SyGG sstls K 11: 33.7725 6( 6) G-[ILM]-[ILM]-P-[TV]-x-G-x(2,4)-L-x(3,5)-S-x-[GIL]-[GI] Occurences: 6(6) FTSW_ECOLI : 365- 381: vgaaa GMLPTkGlt--Lpli--SyGG sslli FTSW_HAEIN : 345- 365: lgmal GMLPTkGltfpLvsyggSsII imsat RODA_ECOLI : 327- 343: igmvs GILPVvGvp--Lplv--SyGG saliv RODA_ECOLI : 327- 347: igmvs GILPVvGvplpLvsyggSaLI vlmag RODA_HAEIN : 328- 344: igmvs GILPVvGvp--Lplf--SyGG tsyva SP5E_BACSU : 328- 344: igvvt GLIPVtGit--Lpfl--SyGG ssltl YWCF_BACSU : 347- 363: igmni GIMPVtGip--Llfv--SyGG sstls L 12: 29.9990 6( 6) A-[FIV]-G-x-G-[EG]-[IL]-x-G-x-G Occurences: 6(6) FTSW_ECOLI : 270- 280: tqslm AFGrGELwGqG lgnsv FTSW_HAEIN : 250- 260: tnsli AFGrGEItGeG lgnsi RODA_ECOLI : 234- 244: iqski AIGsGGLrGkG wlhgt RODA_HAEIN : 235- 245: lqski AIGsGGLsGkG wmqgt SP5E_BACSU : 236- 246: iqsly AVGpGGLfGmG lgqsr YWCF_BACSU : 256- 266: dqaim AIGsGGIlGnG isnlk M 13: 29.9807 6( 6) Q-[AGS]-x(2)-[AN]-[ILV]-G-x(1,3)-G-x-L-x(1,3)-G-x-[GST] Occurences: 6(6) FTSW_ECOLI : 355- 373: iwfsf QAlvNVGaaaGmLptkGlT lplis FTSW_HAEIN : 335- 353: fwiff QGfvNLGmalGmLptkGlT fplvs RODA_ECOLI : 230- 244: gyhii QSkiAIGs--GgLr--GkG wlhgt RODA_HAEIN : 231- 245: gyhil QSkiAIGs--GgLs--GkG wmqgt SP5E_BACSU : 232- 246: gfqii QSlyAVGp--GgLf--GmG lgqsr SP5E_BACSU : 232- 248: gfqii QSlyAVGp--GgLfgmGlG qsrqk YWCF_BACSU : 252- 268: swqvd QAimAIGsg-GiLgn-GiS nlkvy N 14: 29.7491 6( 6) L-x(0,2)-S-Y-G-G-x(0,1)-S-x-[ILV]-x(2)-[LM] Occurences: 6(6) FTSW_ECOLI : 376- 387: gltlp Li-SYGG-SsLliM staim FTSW_HAEIN : 356- 367: gltfp Lv-SYGG-SsIiiM satig RODA_ECOLI : 338- 349: gvplp Lv-SYGG-SaLivL magfg RODA_HAEIN : 339- 351: gvplp Lf-SYGGtSyVaiM asfgl SP5E_BACSU : 340- 350: itlpf L--SYGG-SsLtlM lmavg YWCF_BACSU : 357- 370: tgipl LfvSYGGsStLstL igfgi O 15: 29.7491 8( 6) P-x(2,4)-S-Y-G-G-x(0,1)-S-x-[ILV]-x(2)-[LM] Occurences: 8(6) FTSW_ECOLI : 375- 387: kgltl Pli--SYGG-SsLliM staim FTSW_HAEIN : 355- 367: kgltf Plv--SYGG-SsIiiM satig RODA_ECOLI : 335- 349: pvvgv PlplvSYGG-SaLivL magfg RODA_ECOLI : 337- 349: vgvpl Plv--SYGG-SaLivL magfg RODA_HAEIN : 336- 351: pvvgv PlplfSYGGtSyVaiM asfgl RODA_HAEIN : 338- 351: vgvpl Plf--SYGGtSyVaiM asfgl SP5E_BACSU : 338- 350: tgitl Pfl--SYGG-SsLtlM lmavg YWCF_BACSU : 355- 370: pvtgi PllfvSYGGsStLstL igfgi P 16: 29.7491 7( 6) L-x(3,5)-S-Y-G-G-x(0,1)-S-x-[ILV]-x(2)-[LM] Occurences: 7(6) FTSW_ECOLI : 372- 387: lptkg LtlpliSYGG-SsLliM staim FTSW_ECOLI : 374- 387: tkglt Lpli--SYGG-SsLliM staim FTSW_HAEIN : 352- 367: lptkg LtfplvSYGG-SsIiiM satig RODA_ECOLI : 336- 349: vvgvp Lplv--SYGG-SaLivL magfg RODA_HAEIN : 337- 351: vvgvp Lplf--SYGGtSyVaiM asfgl SP5E_BACSU : 337- 350: vtgit Lpfl--SYGG-SsLtlM lmavg YWCF_BACSU : 356- 370: vtgip Llfv--SYGGsStLstL igfgi Q 17: 29.7491 10( 6) L-x(1,3)-S-Y-G-G-x(0,1)-S-x-[ILV]-x(2)-[LM] Occurences: 10(6) FTSW_ECOLI : 374- 387: tkglt LpliSYGG-SsLliM staim FTSW_ECOLI : 376- 387: gltlp Li--SYGG-SsLliM staim FTSW_HAEIN : 356- 367: gltfp Lv--SYGG-SsIiiM satig RODA_ECOLI : 336- 349: vvgvp LplvSYGG-SaLivL magfg RODA_ECOLI : 338- 349: gvplp Lv--SYGG-SaLivL magfg RODA_HAEIN : 337- 351: vvgvp LplfSYGGtSyVaiM asfgl RODA_HAEIN : 339- 351: gvplp Lf--SYGGtSyVaiM asfgl SP5E_BACSU : 337- 350: vtgit LpflSYGG-SsLtlM lmavg YWCF_BACSU : 356- 370: vtgip LlfvSYGGsStLstL igfgi YWCF_BACSU : 357- 370: tgipl Lfv-SYGGsStLstL igfgi R 18: 26.5790 6( 6) S-Y-G-G-x(0,1)-S-x-[ILV]-x(2)-[LM] Occurences: 6(6) FTSW_ECOLI : 378- 387: tlpli SYGG-SsLliM staim FTSW_HAEIN : 358- 367: tfplv SYGG-SsIiiM satig RODA_ECOLI : 340- 349: plplv SYGG-SaLivL magfg RODA_HAEIN : 341- 351: plplf SYGGtSyVaiM asfgl SP5E_BACSU : 341- 350: tlpfl SYGG-SsLtlM lmavg YWCF_BACSU : 360- 370: pllfv SYGGsStLstL igfgi S 19: 25.7126 6( 6) S-x(2)-A-x-G-x(1,2)-G-x(2,3)-G-x-[GT]-x(3)-[GQS] Occurences: 6(6) FTSW_ECOLI : 267- 284: yqltq SlmAfGr-GelwGqGlgnS vqkle FTSW_HAEIN : 247- 264: fqltn SliAfGr-GeitGeGlgnS iqkld RODA_ECOLI : 231- 248: yhiiq SkiAiGsgGlr-GkGwlhG tqsql RODA_ECOLI : 231- 248: yhiiq SkiAiGs-GglrGkGwlhG tqsql RODA_HAEIN : 232- 249: yhilq SkiAiGsgGls-GkGwmqG tqsql RODA_HAEIN : 232- 249: yhilq SkiAiGs-GglsGkGwmqG tqsql SP5E_BACSU : 233- 250: fqiiq SlyAvGpgGlf-GmGlgqS rqkff SP5E_BACSU : 233- 250: fqiiq SlyAvGp-GglfGmGlgqS rqkff YWCF_BACSU : 30- 47: iisvv SiyAaGqfGqy-GnTdwiQ qivfy T 20: 25.1223 6( 6) F-I-x(0,1)-F-x(4,5)-E-[EPS]-x-G-x-[GIV] Occurences: 6(6) FTSW_ECOLI : 298- 310: eahtd FI-Faiig-EElGyV gvvla FTSW_HAEIN : 227- 241: yrlkr FIgFlepfkEPyGtG fqltn RODA_ECOLI : 263- 275: erhtd FI-Favla-EElGlV gilil RODA_HAEIN : 264- 276: ephtd FI-Favmg-EEhGmI gflil SP5E_BACSU : 264- 276: epqtd FI-Fails-EElGfI ggtli YWCF_BACSU : 281- 293: esttd FI-Fsiig-ESfGfI gcaiv Number of patterns evaluated by Pratt:14658 Total running time: 6 seconds