------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 8 sequences from file FTHFS_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 8 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename FTHFS_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: C1TC_HUMAN 934 C1TC_RAT 934 C1TC_YEAST 946 C1TM_YEAST 975 FTHS_CLOAC 556 FTHS_CLOCY 556 FTHS_CLOTH 559 FTHS_SPIOL 35 Pratt run started at Thu Feb 6 19:30:36 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 20.3503 8( 8) V-A-T-x(0,1)-V-x-A 2: 16.6802 8( 8) T-V-R-x-L 3: 16.1802 9( 8) V-P-x(1,2)-D-I 4: 16.1802 8( 8) A-T-x(0,1)-V-x-A 5: 16.1802 8( 8) L-E-x(1,2)-T-P 6: 16.1802 9( 8) G-x(3)-T-x(3)-L-x(1,2)-A 7: 16.1802 8( 8) G-x(0,1)-G-x(3)-T-x(3)-L 8: 15.6802 8( 8) L-H-x(2,3)-D-x(1,2)-A 9: 15.6802 10( 8) D-x(0,2)-I-x(2)-A-x-E 10: 15.6802 10( 8) D-I-x(2)-A-x(1,3)-E 11: 15.6802 8( 8) T-V-R-x(0,2)-K 12: 15.6802 11( 8) G-x(2)-K-x(0,1)-T-x(3,4)-L 13: 15.1802 11( 8) A-x(3)-L-x(1,2)-A-x(0,2)-D 14: 15.1802 15( 8) A-x(2,3)-L-x(2)-A-x(0,2)-D 15: 15.1802 8( 8) A-x(1,3)-A-x(3)-L-x(1,2)-A 16: 15.1802 9( 8) A-x(1,3)-A-x(2,3)-L-x(2)-A 17: 15.1802 8( 8) I-x(1,2)-A-x(2,4)-L-x(2)-A 18: 15.1802 8( 8) I-x(4,5)-E-x(0,2)-L-x(5)-A 19: 15.1802 9( 8) K-x(2,3)-V-x(2,4)-P-x-P 20: 15.1802 8( 8) K-x(2,3)-V-x(0,2)-P-x(4)-I Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 60.5176 8( 8) L-E-x(1,2)-T-P-[AV]-x-[AIV]-[DH]-[AGI]-[DG]-[IP]-x-[AN]-[AN]-[IV]-[AES]-x-[GL]-x(2)-[AS]-x-[IL]-A B 2: 49.7601 8( 8) K-x(2,3)-V-x(2,4)-P-[TV]-P-[AL]-[DG]-x-[DG]-x-[AST]-[NT]-[AT]-[NSTV]-x-[GP]-L-x(2)-[AG] C 3: 39.6303 8( 8) T-V-R-x-L-[EK]-x(2)-[GT]-[GP]-[AGV]-[AP]-x(4)-[AGI]-x-[ENPS]-x-[LPV] D 4: 39.0828 8( 8) V-A-T-x(0,1)-V-x-A-x(4)-[AG]-[GN]-[AGV]-[APV]-x(4)-[AGI]-x-[DEPS]-x-[ALPV] E 5: 39.0735 8( 8) D-I-[DST]-[IV]-A-x(1,3)-E-[ILPV]-[LM]-x(2)-[AL]-[ACD]-[IL]-[AST] F 6: 38.6447 9( 8) D-x(0,2)-I-[AQST]-x-A-[SV]-E-[ILPV]-[LM]-x(2)-[AL]-[ACD]-[IL]-[AST] G 7: 36.4162 9( 8) D-x(0,2)-I-x(2)-A-[SV]-E-[ILPV]-[LM]-x(2)-[AL]-[ACD]-[IL]-[AST] H 8: 36.1500 8( 8) D-I-x-[IV]-A-x(1,3)-E-[AILPV]-[LM]-x(2)-[AL]-[ACD]-[IL]-[AST] I 9: 34.9127 8( 8) A-T-x(0,1)-V-x-A-x(4)-[AG]-[GN]-[AGV]-[APV]-x(4)-[AGI]-x-[DEPS]-x-[ALPV] J 10: 32.9251 9( 8) D-I-x(2)-A-x(1,3)-E-[AILPV]-[LM]-x(2)-[AL]-[ACD]-[IL]-[AST] K 11: 30.1302 8( 8) T-V-R-x(0,2)-K-x(2)-[GV]-[AG]-[AGTV]-[AP]-x(4)-[AGI] L 12: 29.4458 8( 8) G-[ES]-[GS]-K-x(0,1)-T-x(3,4)-L-x(2)-[AG]-x-[AGNPST]-x(2)-[AGL] M 13: 28.9476 8( 8) G-x(0,1)-G-x-[ST]-x-T-[NSTV]-x(2)-L-x(2)-[AG]-x-[AGNPST]-x(2)-[AGL] N 14: 25.7722 8( 8) G-x(0,1)-G-x(3)-T-[NSTV]-x(2)-L-x(2)-[AG]-x-[AGNPST]-x(2)-[AGL] O 15: 24.3701 8( 8) A-x(1,3)-A-x(2,3)-L-x-[AI]-A-x-[ILV]-[AD] P 16: 24.3118 9( 8) V-P-x(1,2)-D-I-[ADEN]-[IL]-x(2)-[AST] Q 17: 23.2777 8( 8) A-x(1,3)-A-x-[ENS]-x-L-x(1,2)-A-x-[AILV]-[AD] R 18: 21.6490 8( 8) I-x(4,5)-E-x(0,2)-L-[HY]-[GI]-x(3)-A S 19: 20.6586 8( 8) G-x(3)-T-x(3)-L-x(1,2)-A-x-[AGPST]-[ASV] T 20: 20.0615 8( 8) I-x(1,2)-A-x(2,4)-L-x-[AIL]-A-x(2)-[ADTV] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 60.5176 8( 8) L-E-x(1,2)-T-P-[AV]-x-[AIV]-[DH]-[AGI]-[DG]-[IP]-x-[AN]-[AN]-[IV]-[AES]-x-[GL]-x(2)-[AS]-x-[IL]-A Occurences: 8(8) C1TC_HUMAN : 626- 650: nlmqt LEg-TPVfVHAGPfANIAhGnsSiIA drial C1TC_RAT : 626- 650: nlmqt LEg-TPVfVHAGPfANIAhGnsSiIA drial C1TC_YEAST : 632- 656: nlmqt LEg-TPVlVHAGPfANISiGasSvIA drval C1TM_YEAST : 656- 680: nlmqt LEg-TPVmVHAGPfANISiGasSvIA dlmal FTHS_CLOAC : 260- 284: nivqt LEn-TPAfIHGGPfANIAhGcnSvLA tklal FTHS_CLOCY : 260- 284: nlvqt LEn-TPAfIHGGPfANIAhGcnSvLA tkval FTHS_CLOTH : 263- 287: nlvqt LEn-TPAfIHGGPfANIAhGcnSiIA tktal FTHS_SPIOL : 10- 35: ktvrk LEvaTPVpADIDIaNAVEpLhiAdIA B 2: 49.7601 8( 8) K-x(2,3)-V-x(2,4)-P-[TV]-P-[AL]-[DG]-x-[DG]-x-[AST]-[NT]-[AT]-[NSTV]-x-[GP]-L-x(2)-[AG] Occurences: 8(8) C1TC_HUMAN : 369- 395: hrpdg KyvvVtgitPTPLGeGkSTTTiGLvqA lgahl C1TC_RAT : 369- 395: hqpdg KyvvVtgitPTPLGeGkSTTTiGLvqA lgahl C1TC_YEAST : 374- 400: trqng KyilVsgitPTPLGeGkSTTTmGLvqA ltahl C1TM_YEAST : 398- 424: sreng KyvlVagitPTPLGeGkSTTTmGLvqA lsahl FTHS_CLOAC : 55- 81: dkpdg KlvlVtainPTPAGeGkTTTNiGLsmG lnklg FTHS_CLOCY : 55- 81: dkeda KlvlVtainPTPAGeGkTTTNvGLsmG lnkig FTHS_CLOTH : 58- 84: dkpdg KlilVtaitPTPAGeGkTTTSvGLtdA larlg FTHS_SPIOL : 9- 32: sktvr Kle-Vat--PVPADiDiANAVePLhiA dia C 3: 39.6303 8( 8) T-V-R-x-L-[EK]-x(2)-[GT]-[GP]-[AGV]-[AP]-x(4)-[AGI]-x-[ENPS]-x-[LPV] Occurences: 8(8) C1TC_HUMAN : 699- 719: vvlva TVRaLKmhGGGPtvtaGlPlP kayiq C1TC_RAT : 699- 719: vvlva TVRaLKmhGGGPtvtaGlPlP kayte C1TC_YEAST : 712- 732: vvlva TVRaLKshGGAPdvkpGqPlP sayte C1TM_YEAST : 741- 761: vvlva TVRaLKshGGAPnvkpGqSlP keyte FTHS_CLOAC : 330- 350: aviva TVRaLKmhGGVAkedlGtEnL dalak FTHS_CLOCY : 330- 350: dvsva TVRaLKmnGGVPktelAaEnV eavkk FTHS_CLOTH : 333- 353: tviva TVRaLKmhGGVPksdlAtEnL ealre FTHS_SPIOL : 6- 26: ggssk TVRkLEvaTPVPadidIaNaV eplhi D 4: 39.0828 8( 8) V-A-T-x(0,1)-V-x-A-x(4)-[AG]-[GN]-[AGV]-[APV]-x(4)-[AGI]-x-[DEPS]-x-[ALPV] Occurences: 8(8) C1TC_HUMAN : 697- 719: hvvvl VAT-VrAlkmhGGGPtvtaGlPlP kayiq C1TC_RAT : 697- 719: hvvvl VAT-VrAlkmhGGGPtvtaGlPlP kayte C1TC_YEAST : 710- 732: navvl VAT-VrAlkshGGAPdvkpGqPlP sayte C1TM_YEAST : 739- 761: davvl VAT-VrAlkshGGAPnvkpGqSlP keyte FTHS_CLOAC : 328- 350: dvavi VAT-VrAlkmhGGVAkedlGtEnL dalak FTHS_CLOCY : 328- 350: ncdvs VAT-VrAlkmnGGVPktelAaEnV eavkk FTHS_CLOTH : 331- 353: datvi VAT-VrAlkmhGGVPksdlAtEnL ealre FTHS_SPIOL : 12- 35: vrkle VATpVpAdidiANAVeplhIaDiA E 5: 39.0735 8( 8) D-I-[DST]-[IV]-A-x(1,3)-E-[ILPV]-[LM]-x(2)-[AL]-[ACD]-[IL]-[AST] Occurences: 8(8) C1TC_HUMAN : 561- 575: rtaqf DISVAs--EIMavLALT tsled C1TC_RAT : 561- 575: rtaqf DISVAs--EIMavLALT ssled C1TC_YEAST : 567- 581: rvtgf DITVAs--ELMaiLALS kdlrd C1TM_YEAST : 591- 605: rttgf DITVAs--ELMaiLALS kslhe FTHS_CLOAC : 195- 209: redgf DITVAs--EIMaiLCLA ndred FTHS_CLOCY : 195- 209: rqaqf DITVAs--EIMaiLCLA tsmsd FTHS_CLOTH : 198- 212: retgf DISVAs--EVMacLCLA sdlmd FTHS_SPIOL : 19- 35: tpvpa DIDIAnavEPLhiADIA F 6: 38.6447 9( 8) D-x(0,2)-I-[AQST]-x-A-[SV]-E-[ILPV]-[LM]-x(2)-[AL]-[ACD]-[IL]-[AST] Occurences: 9(8) C1TC_HUMAN : 561- 575: rtaqf D--ISvASEIMavLALT tsled C1TC_RAT : 561- 575: rtaqf D--ISvASEIMavLALT ssled C1TC_YEAST : 567- 581: rvtgf D--ITvASELMaiLALS kdlrd C1TM_YEAST : 591- 605: rttgf D--ITvASELMaiLALS kslhe FTHS_CLOAC : 195- 209: redgf D--ITvASEIMaiLCLA ndred FTHS_CLOCY : 195- 209: rqaqf D--ITvASEIMaiLCLA tsmsd FTHS_CLOTH : 198- 212: retgf D--ISvASEVMacLCLA sdlmd FTHS_SPIOL : 19- 35: tpvpa DidIAnAVEPLhiADIA FTHS_SPIOL : 21- 35: vpadi D--IAnAVEPLhiADIA G 7: 36.4162 9( 8) D-x(0,2)-I-x(2)-A-[SV]-E-[ILPV]-[LM]-x(2)-[AL]-[ACD]-[IL]-[AST] Occurences: 9(8) C1TC_HUMAN : 561- 575: rtaqf D--IsvASEIMavLALT tsled C1TC_RAT : 561- 575: rtaqf D--IsvASEIMavLALT ssled C1TC_YEAST : 567- 581: rvtgf D--ItvASELMaiLALS kdlrd C1TM_YEAST : 591- 605: rttgf D--ItvASELMaiLALS kslhe FTHS_CLOAC : 195- 209: redgf D--ItvASEIMaiLCLA ndred FTHS_CLOCY : 195- 209: rqaqf D--ItvASEIMaiLCLA tsmsd FTHS_CLOTH : 198- 212: retgf D--IsvASEVMacLCLA sdlmd FTHS_SPIOL : 19- 35: tpvpa DidIanAVEPLhiADIA FTHS_SPIOL : 21- 35: vpadi D--IanAVEPLhiADIA H 8: 36.1500 8( 8) D-I-x-[IV]-A-x(1,3)-E-[AILPV]-[LM]-x(2)-[AL]-[ACD]-[IL]-[AST] Occurences: 8(8) C1TC_HUMAN : 561- 575: rtaqf DIsVAs--EIMavLALT tsled C1TC_RAT : 561- 575: rtaqf DIsVAs--EIMavLALT ssled C1TC_YEAST : 567- 581: rvtgf DItVAs--ELMaiLALS kdlrd C1TM_YEAST : 591- 605: rttgf DItVAs--ELMaiLALS kslhe FTHS_CLOAC : 195- 209: redgf DItVAs--EIMaiLCLA ndred FTHS_CLOCY : 195- 209: rqaqf DItVAs--EIMaiLCLA tsmsd FTHS_CLOTH : 198- 212: retgf DIsVAs--EVMacLCLA sdlmd FTHS_SPIOL : 19- 35: tpvpa DIdIAnavEPLhiADIA I 9: 34.9127 8( 8) A-T-x(0,1)-V-x-A-x(4)-[AG]-[GN]-[AGV]-[APV]-x(4)-[AGI]-x-[DEPS]-x-[ALPV] Occurences: 8(8) C1TC_HUMAN : 698- 719: vvvlv AT-VrAlkmhGGGPtvtaGlPlP kayiq C1TC_RAT : 698- 719: vvvlv AT-VrAlkmhGGGPtvtaGlPlP kayte C1TC_YEAST : 711- 732: avvlv AT-VrAlkshGGAPdvkpGqPlP sayte C1TM_YEAST : 740- 761: avvlv AT-VrAlkshGGAPnvkpGqSlP keyte FTHS_CLOAC : 329- 350: vaviv AT-VrAlkmhGGVAkedlGtEnL dalak FTHS_CLOCY : 329- 350: cdvsv AT-VrAlkmnGGVPktelAaEnV eavkk FTHS_CLOTH : 332- 353: atviv AT-VrAlkmhGGVPksdlAtEnL ealre FTHS_SPIOL : 13- 35: rklev ATpVpAdidiANAVeplhIaDiA J 10: 32.9251 9( 8) D-I-x(2)-A-x(1,3)-E-[AILPV]-[LM]-x(2)-[AL]-[ACD]-[IL]-[AST] Occurences: 9(8) C1TC_HUMAN : 561- 575: rtaqf DIsvAs--EIMavLALT tsled C1TC_RAT : 561- 575: rtaqf DIsvAs--EIMavLALT ssled C1TC_YEAST : 567- 581: rvtgf DItvAs--ELMaiLALS kdlrd C1TM_YEAST : 591- 605: rttgf DItvAs--ELMaiLALS kslhe FTHS_CLOAC : 195- 209: redgf DItvAs--EIMaiLCLA ndred FTHS_CLOCY : 195- 209: rqaqf DItvAs--EIMaiLCLA tsmsd FTHS_CLOTH : 198- 212: retgf DIsvAs--EVMacLCLA sdlmd FTHS_SPIOL : 19- 35: tpvpa DIdiAnavEPLhiADIA FTHS_SPIOL : 21- 35: vpadi DIanAv--EPLhiADIA K 11: 30.1302 8( 8) T-V-R-x(0,2)-K-x(2)-[GV]-[AG]-[AGTV]-[AP]-x(4)-[AGI] Occurences: 8(8) C1TC_HUMAN : 699- 715: vvlva TVRalKmhGGGPtvtaG lplpk C1TC_RAT : 699- 715: vvlva TVRalKmhGGGPtvtaG lplpk C1TC_YEAST : 712- 728: vvlva TVRalKshGGAPdvkpG qplps C1TM_YEAST : 741- 757: vvlva TVRalKshGGAPnvkpG qslpk FTHS_CLOAC : 330- 346: aviva TVRalKmhGGVAkedlG tenld FTHS_CLOCY : 330- 346: dvsva TVRalKmnGGVPktelA aenve FTHS_CLOTH : 333- 349: tviva TVRalKmhGGVPksdlA tenle FTHS_SPIOL : 6- 20: ggssk TVR--KleVATPvpadI diana L 12: 29.4458 8( 8) G-[ES]-[GS]-K-x(0,1)-T-x(3,4)-L-x(2)-[AG]-x-[AGNPST]-x(2)-[AGL] Occurences: 8(8) C1TC_HUMAN : 382- 400: tptpl GEGKsTttigLvqAlGahL yqnvf C1TC_RAT : 382- 400: tptpl GEGKsTttigLvqAlGahL hqnvf C1TC_YEAST : 387- 405: tptpl GEGKsTttmgLvqAlTahL gkpai C1TM_YEAST : 411- 429: tptpl GEGKsTttmgLvqAlSahL gkpsi FTHS_CLOAC : 68- 86: nptpa GEGKtTtnigLsmGlNklG kktst FTHS_CLOCY : 68- 86: nptpa GEGKtTtnvgLsmGlNkiG krtit FTHS_CLOTH : 71- 89: tptpa GEGKtTtsvgLtdAlArlG krvmv FTHS_SPIOL : 2- 18: g GSSK-Tvrk-LevAtPvpA didia M 13: 28.9476 8( 8) G-x(0,1)-G-x-[ST]-x-T-[NSTV]-x(2)-L-x(2)-[AG]-x-[AGNPST]-x(2)-[AGL] Occurences: 8(8) C1TC_HUMAN : 382- 400: tptpl GeGkStTTigLvqAlGahL yqnvf C1TC_RAT : 382- 400: tptpl GeGkStTTigLvqAlGahL hqnvf C1TC_YEAST : 387- 405: tptpl GeGkStTTmgLvqAlTahL gkpai C1TM_YEAST : 411- 429: tptpl GeGkStTTmgLvqAlSahL gkpsi FTHS_CLOAC : 68- 86: nptpa GeGkTtTNigLsmGlNklG kktst FTHS_CLOCY : 68- 86: nptpa GeGkTtTNvgLsmGlNkiG krtit FTHS_CLOTH : 71- 89: tptpa GeGkTtTSvgLtdAlArlG krvmv FTHS_SPIOL : 1- 18: G-GsSkTVrkLevAtPvpA didia N 14: 25.7722 8( 8) G-x(0,1)-G-x(3)-T-[NSTV]-x(2)-L-x(2)-[AG]-x-[AGNPST]-x(2)-[AGL] Occurences: 8(8) C1TC_HUMAN : 382- 400: tptpl GeGkstTTigLvqAlGahL yqnvf C1TC_RAT : 382- 400: tptpl GeGkstTTigLvqAlGahL hqnvf C1TC_YEAST : 387- 405: tptpl GeGkstTTmgLvqAlTahL gkpai C1TM_YEAST : 411- 429: tptpl GeGkstTTmgLvqAlSahL gkpsi FTHS_CLOAC : 68- 86: nptpa GeGkttTNigLsmGlNklG kktst FTHS_CLOCY : 68- 86: nptpa GeGkttTNvgLsmGlNkiG krtit FTHS_CLOTH : 71- 89: tptpa GeGkttTSvgLtdAlArlG krvmv FTHS_SPIOL : 1- 18: G-GsskTVrkLevAtPvpA didia O 15: 24.3701 8( 8) A-x(1,3)-A-x(2,3)-L-x-[AI]-A-x-[ILV]-[AD] Occurences: 8(8) C1TC_HUMAN : 447- 460: tgdih AitaAnn-LvAAaID arifh C1TC_HUMAN : 447- 460: tgdih Ait-AannLvAAaID arifh C1TC_RAT : 447- 460: tgdih AitaAnn-LvAAaID arifh C1TC_RAT : 447- 460: tgdih Ait-AannLvAAaID arifh C1TC_YEAST : 452- 465: tgdih AigaAnn-LlAAaID trmfh C1TC_YEAST : 452- 465: tgdih Aig-AannLlAAaID trmfh C1TM_YEAST : 476- 489: tgdih AisaAnn-LlAAaID trmfh C1TM_YEAST : 476- 489: tgdih Ais-AannLlAAaID trmfh FTHS_CLOAC : 132- 145: tgdfh AitsAhs-LlAAlVD nhlhh FTHS_CLOCY : 132- 145: tgdfh AitsAhn-LlAAlLD nhlhq FTHS_CLOTH : 135- 148: tgdih AvtyAhn-LlAAmVD nhlqq FTHS_SPIOL : 23- 35: adidi An--AvepLhIAdIA P 16: 24.3118 9( 8) V-P-x(1,2)-D-I-[ADEN]-[IL]-x(2)-[AST] Occurences: 9(8) C1TC_HUMAN : 315- 324: nlktp VPs-DIDIsrS ckpkp C1TC_RAT : 315- 324: nlktp VPs-DIAIsrS ckpkl C1TC_YEAST : 320- 329: klltp VPs-DIDIsrA qqpkl C1TM_YEAST : 344- 353: hlesp VPs-DIDIsrA qspkh FTHS_CLOAC : 117- 127: gyaqv VPmaDINLhfT gdfha FTHS_CLOCY : 117- 127: gyaqv VPmdDINLhfT gdfha FTHS_CLOTH : 4- 13: msk VPs-DIEIaqA akmkp FTHS_CLOTH : 120- 130: gyaqv VPmeDINLhfT gdiha FTHS_SPIOL : 16- 25: evatp VPa-DIDIanA veplh Q 17: 23.2777 8( 8) A-x(1,3)-A-x-[ENS]-x-L-x(1,2)-A-x-[AILV]-[AD] Occurences: 8(8) C1TC_HUMAN : 447- 460: tgdih Ait-AaNnLvaAaID arifh C1TC_RAT : 447- 460: tgdih Ait-AaNnLvaAaID arifh C1TC_YEAST : 452- 465: tgdih AigaAnNlLa-AaID trmfh C1TC_YEAST : 452- 465: tgdih Aig-AaNnLlaAaID trmfh C1TM_YEAST : 476- 489: tgdih AisaAnNlLa-AaID trmfh C1TM_YEAST : 476- 489: tgdih Ais-AaNnLlaAaID trmfh FTHS_CLOAC : 132- 145: tgdfh AitsAhSlLa-AlVD nhlhh FTHS_CLOCY : 132- 145: tgdfh AitsAhNlLa-AlLD nhlhq FTHS_CLOTH : 135- 148: tgdih AvtyAhNlLa-AmVD nhlqq FTHS_SPIOL : 23- 35: adidi An--AvEpLhiAdIA R 18: 21.6490 8( 8) I-x(4,5)-E-x(0,2)-L-[HY]-[GI]-x(3)-A Occurences: 8(8) C1TC_HUMAN : 337- 352: klare IgllseEveLYGetkA kvlls C1TC_RAT : 337- 352: nlare IgllteEveLYGetkA kvlls C1TC_YEAST : 344- 357: aqelg IyshelE--LYGhykA kispk C1TM_YEAST : 368- 381: aeelg IhshelE--LYGhykA kispn FTHS_CLOAC : 25- 38: aelid IheddlE--LYGkykA kvsld FTHS_CLOCY : 25- 38: anylg IqddelE--LYGkykA kvsld FTHS_CLOTH : 28- 41: arglg IqedevE--LYGkykA kisld FTHS_SPIOL : 22- 35: padid Ianav-Ep-LHIadiA S 19: 20.6586 8( 8) G-x(3)-T-x(3)-L-x(1,2)-A-x-[AGPST]-[ASV] Occurences: 8(8) C1TC_HUMAN : 384- 398: tplge GkstTtigLvqAlGA hlyqn C1TC_RAT : 384- 398: tplge GkstTtigLvqAlGA hlhqn C1TC_YEAST : 389- 403: tplge GkstTtmgLvqAlTA hlgkp C1TM_YEAST : 413- 427: tplge GkstTtmgLvqAlSA hlgkp FTHS_CLOAC : 505- 519: lgape GfelTirdLelAaGA gfiva FTHS_CLOCY : 230- 243: ayakd GsavTagqLe-AtGA malll FTHS_CLOTH : 233- 246: gytyd GkpvTagdLe-AqGS mallm FTHS_SPIOL : 2- 16: g GsskTvrkLevAtPV padid T 20: 20.0615 8( 8) I-x(1,2)-A-x(2,4)-L-x-[AIL]-A-x(2)-[ADTV] Occurences: 8(8) C1TC_HUMAN : 448- 460: gdiha ItaAnn--LvAAaiD arifh C1TC_HUMAN : 448- 460: gdiha It-Aann-LvAAaiD arifh C1TC_RAT : 448- 460: gdiha ItaAnn--LvAAaiD arifh C1TC_RAT : 448- 460: gdiha It-Aann-LvAAaiD arifh C1TC_YEAST : 453- 465: gdiha IgaAnn--LlAAaiD trmfh C1TC_YEAST : 453- 465: gdiha Ig-Aann-LlAAaiD trmfh C1TC_YEAST : 453- 466: gdiha IgaAnnl-LaAAidT rmfhe C1TC_YEAST : 453- 466: gdiha Ig-AannlLaAAidT rmfhe C1TM_YEAST : 477- 489: gdiha IsaAnn--LlAAaiD trmfh C1TM_YEAST : 477- 489: gdiha Is-Aann-LlAAaiD trmfh C1TM_YEAST : 477- 490: gdiha IsaAnnl-LaAAidT rmfhe C1TM_YEAST : 477- 490: gdiha Is-AannlLaAAidT rmfhe FTHS_CLOAC : 133- 145: gdfha ItsAhs--LlAAlvD nhlhh FTHS_CLOCY : 133- 145: gdfha ItsAhn--LlAAllD nhlhq FTHS_CLOTH : 285- 298: hgcns Ii-AtktaLkLAdyV vteag FTHS_SPIOL : 22- 35: padid IanAvep-LhIAdiA Number of patterns evaluated by Pratt:2673 Total running time: 3 seconds