------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file FRD_SDH_FAD_BINDING PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename FRD_SDH_FAD_BINDING.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: DHSA_BACSU 585 DHSA_BOVIN 664 DHSA_ECOLI 588 DHSA_HUMAN 664 DHSA_RICPR 596 DHSA_YEAST 640 FRDA_ECOLI 601 FRDA_HAEIN 599 FRDA_PROVU 598 FRDA_WOLSU 656 Pratt run started at Thu Feb 6 19:30:09 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 36.5305 10( 10) A-x(2)-R-x-E-S-R-G-x(5)-D-x(3,5)-R-x-D 2: 32.3604 10( 10) R-x-E-S-R-G-x(5)-D-x(3,5)-R-x-D 3: 32.3604 10( 10) D-x(4)-H-x(1,2)-D-x(0,1)-T-V-x-G-x-D-x(4)-Q 4: 29.1904 10( 10) H-x(2)-D-T-V-x-G-x-D-x(4)-Q 5: 28.1904 10( 10) E-S-R-G-x(5)-D-x(3,5)-R-x-D 6: 28.1904 10( 10) H-x(1,2)-D-x(0,1)-T-V-x-G-x-D-x(4)-Q 7: 28.1904 10( 10) P-x(1,2)-R-x-H-x(3)-A-x-G-G-x(2,3)-A 8: 27.6904 10( 10) G-x(0,1)-L-x-T-x(0,2)-E-G-x(4)-G-x(2)-L 9: 25.0203 10( 10) L-x(2)-E-x(2)-R-G-x-G-G 10: 25.0203 10( 10) D-T-V-x-G-x-D-x(4)-Q 11: 24.5203 11( 10) D-x(0,1)-T-V-x-G-x-D-x(4)-Q 12: 24.5203 10( 10) R-x-H-x(3)-A-x-G-G-x(2,3)-A 13: 24.0203 10( 10) S-R-G-x(5)-D-x(3,5)-R-x-D 14: 24.0203 10( 10) L-x-T-x(0,2)-E-G-x(4)-G-x(2)-L 15: 24.0203 11( 10) R-x(1,3)-G-x(4)-R-x-F-G-G 16: 23.5203 10( 10) R-x(1,3)-E-S-x(0,1)-R-G-x(3)-R 17: 20.8503 10( 10) E-x(2)-R-G-x-G-G 18: 20.8503 10( 10) G-x(4)-R-x-F-G-G 19: 20.8503 10( 10) T-V-x-G-x-D-x(4)-Q 20: 20.3503 10( 10) E-S-x(0,1)-R-G-x(3)-R Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 90.1314 10( 10) H-[FM]-x-D-T-V-x-G-[GS]-D-[FWY]-[GIL]-[ACG]-[DEN]-Q-x(2)-[AILV]-[DEHKR]-x-[FM]-[CTV]-x(2)-[ACGS]-P-x(2)-[IMV]-x(2)-L-[ADE]-x(2)-[AG]-x(2)-[FW]-[NST]-R-x(3)-G B 2: 88.4286 10( 10) D-[DNS]-x(3)-H-x(1,2)-D-x(0,1)-T-V-x-G-[GS]-D-[FWY]-[GIL]-[ACG]-[DEN]-Q-x(2)-[AILV]-[DEHKR]-x-[FM]-[CTV]-x(2)-[ACGS]-P-x(2)-[IMV]-x(2)-L-[ADE]-x(2)-[AG]-x(2)-[FW]-[NST]-R C 3: 85.8036 10( 10) H-x(1,2)-D-x(0,1)-T-V-x-G-[GS]-D-[FWY]-[GIL]-[ACG]-[DEN]-Q-x(2)-[AILV]-[DEHKR]-x-[FM]-[CTV]-x(2)-[ACGS]-P-x(2)-[IMV]-x(2)-L-[ADE]-x(2)-[AG]-x(2)-[FW]-[NST]-R-x(3)-G D 4: 82.6336 10( 10) D-T-V-x-G-[GS]-D-[FWY]-[GIL]-[ACG]-[DEN]-Q-x(2)-[AILV]-[DEHKR]-x-[FM]-[CTV]-x(2)-[ACGS]-P-x(2)-[IMV]-x(2)-L-[ADE]-x(2)-[AG]-x(2)-[FW]-[NST]-R-x(3)-G E 5: 82.1336 11( 10) D-x(0,1)-T-V-x-G-[GS]-D-[FWY]-[GIL]-[ACG]-[DEN]-Q-x(2)-[AILV]-[DEHKR]-x-[FM]-[CTV]-x(2)-[ACGS]-P-x(2)-[IMV]-x(2)-L-[ADE]-x(2)-[AG]-x(2)-[FW]-[NST]-R-x(3)-G F 6: 78.4635 10( 10) T-V-x-G-[GS]-D-[FWY]-[GIL]-[ACG]-[DEN]-Q-x(2)-[AILV]-[DEHKR]-x-[FM]-[CTV]-x(2)-[ACGS]-P-x(2)-[IMV]-x(2)-L-[ADE]-x(2)-[AG]-x(2)-[FW]-[NST]-R-x(3)-G G 7: 43.5913 10( 10) P-x(1,2)-R-[ST]-H-[ST]-[AV]-[ACS]-A-[EQ]-G-G-x(2,3)-A H 8: 43.4432 10( 10) L-[ILMV]-[ST]-E-[GS]-[AC]-R-G-[DE]-G-G-x-[LV] I 9: 42.9487 10( 10) A-x(2)-R-x-E-S-R-G-[AG]-x(2)-[KR]-x-D-x(3,5)-R-x-D J 10: 39.9212 10( 10) R-[ST]-H-[ST]-[AV]-[ACS]-A-[EQ]-G-G-x(2,3)-A K 11: 39.0202 10( 10) G-x(0,1)-L-[ILMV]-T-x(0,2)-E-G-x-[ER]-x(2)-G-[AG]-x-L-x-[DNR] L 12: 38.7787 10( 10) R-x-E-S-R-G-[AG]-x(2)-[KR]-x-D-x(3,5)-R-x-D M 13: 35.3501 10( 10) L-[ILMV]-T-x(0,2)-E-G-x-[ER]-x(2)-G-[AG]-x-L-x-[DNR] N 14: 34.6086 10( 10) E-S-R-G-[AG]-x(2)-[KR]-x-D-x(3,5)-R-x-D O 15: 33.7031 10( 10) E-[GS]-[AC]-R-G-[DE]-G-G-x-[LV] P 16: 30.4386 10( 10) S-R-G-[AG]-x(2)-[KR]-x-D-x(3,5)-R-x-D Q 17: 26.6821 11( 10) R-x(1,3)-G-x-[ILV]-x(2)-R-x-F-G-G R 18: 26.1503 10( 10) R-x(1,3)-E-S-x(0,1)-R-G-[AEG]-x(2)-R S 19: 23.5203 10( 10) R-x(1,3)-E-S-x(0,1)-R-G-x(3)-R T 20: 23.5121 10( 10) G-x-[ILV]-x(2)-R-x-F-G-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 90.1314 10( 10) H-[FM]-x-D-T-V-x-G-[GS]-D-[FWY]-[GIL]-[ACG]-[DEN]-Q-x(2)-[AILV]-[DEHKR]-x-[FM]-[CTV]-x(2)-[ACGS]-P-x(2)-[IMV]-x(2)-L-[ADE]-x(2)-[AG]-x(2)-[FW]-[NST]-R-x(3)-G Occurences: 10(10) DHSA_BACSU : 64- 108: dspwe HFdDTVyGGDFLANQppLKaMCeaAPsiIhlLDrmAvmFNRtpeG lldfr DHSA_BOVIN : 123- 167: dnwrw HFyDTVkGSDWLGDQdaIHyMTeqAPasVveLEnyGmpFSRtedG kiyqr DHSA_ECOLI : 68- 112: dnwew HMyDTVkGSDYIGDQdaIEyMCktGPeaIleLEhmGlpFSRlddG riyqr DHSA_HUMAN : 122- 166: dnwrw HFyDTVkGSDWLGDQdaIHyMTeqAPaaVveLEnyGmpFSRtedG kiyqr DHSA_RICPR : 72- 116: ddwrw HMyDTVkGSDWLGDQdaIEyMCknAPdaIleLEhyGvpFSRtvdG kiyqr DHSA_YEAST : 113- 157: dnwkw HMyDTVkGSDWLGDQdsIHyMTreAPksIieLEhyGvpFSRtenG kiyqr FRDA_ECOLI : 65- 109: dsfey HFhDTVaGGDWLCEQdvVDyFVhhCPteMtqLElwGcpWSRrpdG svnvr FRDA_HAEIN : 66- 110: dsydk HFqDTVaGGDWLCEQdvVEyFVqhSPveMtqLErwGcpWSRkadG dvnvr FRDA_PROVU : 66- 110: dsydf HFnDTVsGGDWLCEQdvVDyFVehCPteMtqLElwGcpWSRkedG svnvr FRDA_WOLSU : 69- 113: dnedl HFmDTVkGSDWGCDQkvARmFVntAPkaIreLAawGvpWTRihkG drmai B 2: 88.4286 10( 10) D-[DNS]-x(3)-H-x(1,2)-D-x(0,1)-T-V-x-G-[GS]-D-[FWY]-[GIL]-[ACG]-[DEN]-Q-x(2)-[AILV]-[DEHKR]-x-[FM]-[CTV]-x(2)-[ACGS]-P-x(2)-[IMV]-x(2)-L-[ADE]-x(2)-[AG]-x(2)-[FW]-[NST]-R Occurences: 10(10) DHSA_BACSU : 59- 104: tkgeg DSpweHfdD-TVyGGDFLANQppLKaMCeaAPsiIhlLDrmAvmFNR tpegl DHSA_BACSU : 59- 104: tkgeg DSpweHf-DdTVyGGDFLANQppLKaMCeaAPsiIhlLDrmAvmFNR tpegl DHSA_BOVIN : 118- 163: gnmee DNwrwHfyD-TVkGSDWLGDQdaIHyMTeqAPasVveLEnyGmpFSR tedgk DHSA_ECOLI : 63- 108: gnthe DNwewHmyD-TVkGSDYIGDQdaIEyMCktGPeaIleLEhmGlpFSR lddgr DHSA_HUMAN : 117- 162: gnmee DNwrwHfyD-TVkGSDWLGDQdaIHyMTeqAPaaVveLEnyGmpFSR tedgk DHSA_RICPR : 67- 112: gnmge DDwrwHmyD-TVkGSDWLGDQdaIEyMCknAPdaIleLEhyGvpFSR tvdgk DHSA_YEAST : 108- 153: gnmhk DNwkwHmyD-TVkGSDWLGDQdsIHyMTreAPksIieLEhyGvpFSR tengk FRDA_ECOLI : 60- 105: vaqdh DSfeyHfhD-TVaGGDWLCEQdvVDyFVhhCPteMtqLElwGcpWSR rpdgs FRDA_HAEIN : 61- 106: vikee DSydkHfqD-TVaGGDWLCEQdvVEyFVqhSPveMtqLErwGcpWSR kadgd FRDA_PROVU : 61- 106: vtqah DSydfHfnD-TVsGGDWLCEQdvVDyFVehCPteMtqLElwGcpWSR kedgs FRDA_WOLSU : 64- 109: kmsdg DNedlHfmD-TVkGSDWGCDQkvARmFVntAPkaIreLAawGvpWTR ihkgd C 3: 85.8036 10( 10) H-x(1,2)-D-x(0,1)-T-V-x-G-[GS]-D-[FWY]-[GIL]-[ACG]-[DEN]-Q-x(2)-[AILV]-[DEHKR]-x-[FM]-[CTV]-x(2)-[ACGS]-P-x(2)-[IMV]-x(2)-L-[ADE]-x(2)-[AG]-x(2)-[FW]-[NST]-R-x(3)-G Occurences: 10(10) DHSA_BACSU : 64- 108: dspwe HfdD-TVyGGDFLANQppLKaMCeaAPsiIhlLDrmAvmFNRtpeG lldfr DHSA_BACSU : 64- 108: dspwe Hf-DdTVyGGDFLANQppLKaMCeaAPsiIhlLDrmAvmFNRtpeG lldfr DHSA_BOVIN : 123- 167: dnwrw HfyD-TVkGSDWLGDQdaIHyMTeqAPasVveLEnyGmpFSRtedG kiyqr DHSA_ECOLI : 68- 112: dnwew HmyD-TVkGSDYIGDQdaIEyMCktGPeaIleLEhmGlpFSRlddG riyqr DHSA_HUMAN : 122- 166: dnwrw HfyD-TVkGSDWLGDQdaIHyMTeqAPaaVveLEnyGmpFSRtedG kiyqr DHSA_RICPR : 72- 116: ddwrw HmyD-TVkGSDWLGDQdaIEyMCknAPdaIleLEhyGvpFSRtvdG kiyqr DHSA_YEAST : 113- 157: dnwkw HmyD-TVkGSDWLGDQdsIHyMTreAPksIieLEhyGvpFSRtenG kiyqr FRDA_ECOLI : 65- 109: dsfey HfhD-TVaGGDWLCEQdvVDyFVhhCPteMtqLElwGcpWSRrpdG svnvr FRDA_HAEIN : 66- 110: dsydk HfqD-TVaGGDWLCEQdvVEyFVqhSPveMtqLErwGcpWSRkadG dvnvr FRDA_PROVU : 66- 110: dsydf HfnD-TVsGGDWLCEQdvVDyFVehCPteMtqLElwGcpWSRkedG svnvr FRDA_WOLSU : 69- 113: dnedl HfmD-TVkGSDWGCDQkvARmFVntAPkaIreLAawGvpWTRihkG drmai D 4: 82.6336 10( 10) D-T-V-x-G-[GS]-D-[FWY]-[GIL]-[ACG]-[DEN]-Q-x(2)-[AILV]-[DEHKR]-x-[FM]-[CTV]-x(2)-[ACGS]-P-x(2)-[IMV]-x(2)-L-[ADE]-x(2)-[AG]-x(2)-[FW]-[NST]-R-x(3)-G Occurences: 10(10) DHSA_BACSU : 67- 108: wehfd DTVyGGDFLANQppLKaMCeaAPsiIhlLDrmAvmFNRtpeG lldfr DHSA_BOVIN : 126- 167: rwhfy DTVkGSDWLGDQdaIHyMTeqAPasVveLEnyGmpFSRtedG kiyqr DHSA_ECOLI : 71- 112: ewhmy DTVkGSDYIGDQdaIEyMCktGPeaIleLEhmGlpFSRlddG riyqr DHSA_HUMAN : 125- 166: rwhfy DTVkGSDWLGDQdaIHyMTeqAPaaVveLEnyGmpFSRtedG kiyqr DHSA_RICPR : 75- 116: rwhmy DTVkGSDWLGDQdaIEyMCknAPdaIleLEhyGvpFSRtvdG kiyqr DHSA_YEAST : 116- 157: kwhmy DTVkGSDWLGDQdsIHyMTreAPksIieLEhyGvpFSRtenG kiyqr FRDA_ECOLI : 68- 109: eyhfh DTVaGGDWLCEQdvVDyFVhhCPteMtqLElwGcpWSRrpdG svnvr FRDA_HAEIN : 69- 110: dkhfq DTVaGGDWLCEQdvVEyFVqhSPveMtqLErwGcpWSRkadG dvnvr FRDA_PROVU : 69- 110: dfhfn DTVsGGDWLCEQdvVDyFVehCPteMtqLElwGcpWSRkedG svnvr FRDA_WOLSU : 72- 113: dlhfm DTVkGSDWGCDQkvARmFVntAPkaIreLAawGvpWTRihkG drmai E 5: 82.1336 11( 10) D-x(0,1)-T-V-x-G-[GS]-D-[FWY]-[GIL]-[ACG]-[DEN]-Q-x(2)-[AILV]-[DEHKR]-x-[FM]-[CTV]-x(2)-[ACGS]-P-x(2)-[IMV]-x(2)-L-[ADE]-x(2)-[AG]-x(2)-[FW]-[NST]-R-x(3)-G Occurences: 11(10) DHSA_BACSU : 66- 108: pwehf DdTVyGGDFLANQppLKaMCeaAPsiIhlLDrmAvmFNRtpeG lldfr DHSA_BACSU : 67- 108: wehfd D-TVyGGDFLANQppLKaMCeaAPsiIhlLDrmAvmFNRtpeG lldfr DHSA_BOVIN : 126- 167: rwhfy D-TVkGSDWLGDQdaIHyMTeqAPasVveLEnyGmpFSRtedG kiyqr DHSA_ECOLI : 71- 112: ewhmy D-TVkGSDYIGDQdaIEyMCktGPeaIleLEhmGlpFSRlddG riyqr DHSA_HUMAN : 125- 166: rwhfy D-TVkGSDWLGDQdaIHyMTeqAPaaVveLEnyGmpFSRtedG kiyqr DHSA_RICPR : 75- 116: rwhmy D-TVkGSDWLGDQdaIEyMCknAPdaIleLEhyGvpFSRtvdG kiyqr DHSA_YEAST : 116- 157: kwhmy D-TVkGSDWLGDQdsIHyMTreAPksIieLEhyGvpFSRtenG kiyqr FRDA_ECOLI : 68- 109: eyhfh D-TVaGGDWLCEQdvVDyFVhhCPteMtqLElwGcpWSRrpdG svnvr FRDA_HAEIN : 69- 110: dkhfq D-TVaGGDWLCEQdvVEyFVqhSPveMtqLErwGcpWSRkadG dvnvr FRDA_PROVU : 69- 110: dfhfn D-TVsGGDWLCEQdvVDyFVehCPteMtqLElwGcpWSRkedG svnvr FRDA_WOLSU : 72- 113: dlhfm D-TVkGSDWGCDQkvARmFVntAPkaIreLAawGvpWTRihkG drmai F 6: 78.4635 10( 10) T-V-x-G-[GS]-D-[FWY]-[GIL]-[ACG]-[DEN]-Q-x(2)-[AILV]-[DEHKR]-x-[FM]-[CTV]-x(2)-[ACGS]-P-x(2)-[IMV]-x(2)-L-[ADE]-x(2)-[AG]-x(2)-[FW]-[NST]-R-x(3)-G Occurences: 10(10) DHSA_BACSU : 68- 108: ehfdd TVyGGDFLANQppLKaMCeaAPsiIhlLDrmAvmFNRtpeG lldfr DHSA_BOVIN : 127- 167: whfyd TVkGSDWLGDQdaIHyMTeqAPasVveLEnyGmpFSRtedG kiyqr DHSA_ECOLI : 72- 112: whmyd TVkGSDYIGDQdaIEyMCktGPeaIleLEhmGlpFSRlddG riyqr DHSA_HUMAN : 126- 166: whfyd TVkGSDWLGDQdaIHyMTeqAPaaVveLEnyGmpFSRtedG kiyqr DHSA_RICPR : 76- 116: whmyd TVkGSDWLGDQdaIEyMCknAPdaIleLEhyGvpFSRtvdG kiyqr DHSA_YEAST : 117- 157: whmyd TVkGSDWLGDQdsIHyMTreAPksIieLEhyGvpFSRtenG kiyqr FRDA_ECOLI : 69- 109: yhfhd TVaGGDWLCEQdvVDyFVhhCPteMtqLElwGcpWSRrpdG svnvr FRDA_HAEIN : 70- 110: khfqd TVaGGDWLCEQdvVEyFVqhSPveMtqLErwGcpWSRkadG dvnvr FRDA_PROVU : 70- 110: fhfnd TVsGGDWLCEQdvVDyFVehCPteMtqLElwGcpWSRkedG svnvr FRDA_WOLSU : 73- 113: lhfmd TVkGSDWGCDQkvARmFVntAPkaIreLAawGvpWTRihkG drmai G 7: 43.5913 10( 10) P-x(1,2)-R-[ST]-H-[ST]-[AV]-[ACS]-A-[EQ]-G-G-x(2,3)-A Occurences: 10(10) DHSA_BACSU : 35- 51: lfsiv PvkRSHSVCAQGGingA vntkg DHSA_BOVIN : 96- 110: vtklf Pt-RSHTVAAQGGin-A algnm DHSA_BOVIN : 96- 111: vtklf Pt-RSHTVAAQGGinaA lgnme DHSA_ECOLI : 41- 56: lskvf Pt-RSHTVSAQGGitvA lgnth DHSA_HUMAN : 95- 109: vtklf Pt-RSHTVAAQGGin-A algnm DHSA_HUMAN : 95- 110: vtklf Pt-RSHTVAAQGGinaA lgnme DHSA_RICPR : 45- 59: itkif Pt-RSHTVAAQGGis-A algnm DHSA_RICPR : 45- 60: itkif Pt-RSHTVAAQGGisaA lgnmg DHSA_YEAST : 86- 100: isklf Pt-RSHTVAAQGGin-A algnm DHSA_YEAST : 86- 101: isklf Pt-RSHTVAAQGGinaA lgnmh FRDA_ECOLI : 40- 54: iskvy Pm-RSHTVAAEGGsa-A vaqdh FRDA_HAEIN : 41- 55: vskvy Pm-RTHTVAAEGGaa-A vikee FRDA_PROVU : 41- 55: iskvy Pm-RSHTVAAEGGsa-A vtqah FRDA_WOLSU : 38- 53: vlsli PvkRSHSAAAQGGmq-A slgns H 8: 43.4432 10( 10) L-[ILMV]-[ST]-E-[GS]-[AC]-R-G-[DE]-G-G-x-[LV] Occurences: 10(10) DHSA_BACSU : 247- 259: ddklr LMSESARGEGGrV wtykd DHSA_BOVIN : 307- 319: ygagc LITEGCRGEGGiL insqg DHSA_ECOLI : 252- 264: agagv LVTEGCRGEGGyL lnkhg DHSA_HUMAN : 306- 318: ygagc LITEGCRGEGGiL insqg DHSA_RICPR : 256- 268: ysagc LITEGARGEGGyL vnang DHSA_YEAST : 297- 309: ygsgc LITEGARGEGGfL vnseg FRDA_ECOLI : 242- 254: pgsgi LMTEGCRGEGGiL vnkng FRDA_HAEIN : 243- 255: pntgi LMTEGCRGEGGiL vnkdg FRDA_PROVU : 243- 255: pgsgi LMTEGCRGEGGiL vnkdg FRDA_WOLSU : 267- 279: fpsgi LLTEGCRGDGGiL rrcgw I 9: 42.9487 10( 10) A-x(2)-R-x-E-S-R-G-[AG]-x(2)-[KR]-x-D-x(3,5)-R-x-D Occurences: 10(10) DHSA_BACSU : 521- 541: vitlg AynRnESRGAhyKpDype--RnD dewlk DHSA_BOVIN : 582- 602: qtiyg AeaRkESRGGprReDfke--RvD eydys DHSA_ECOLI : 530- 550: atavs AnfRtESRGAhsRfDfpd--RdD enwlc DHSA_HUMAN : 582- 602: qtiyg AeaRkESRGAhaReDykv--RiD eydys DHSA_RICPR : 533- 553: vtvcs AaaRkESRGAhaReDypd--RnD rdwik DHSA_YEAST : 575- 595: qtavs AanRkESRGAhaReDypn--RdD ehwmk FRDA_ECOLI : 522- 544: cmahs AmaRkESRGAhqRlDegcteRdD vnflk FRDA_HAEIN : 524- 544: sians AieRkESRGAhqRlDyte--RdD vnylk FRDA_PROVU : 523- 545: cmahs AfnRkESRGAhqRlDegcteRdD vnflk FRDA_WOLSU : 537- 557: cvakg AldRtESRGAhnReDypk--RdD inwln J 10: 39.9212 10( 10) R-[ST]-H-[ST]-[AV]-[ACS]-A-[EQ]-G-G-x(2,3)-A Occurences: 10(10) DHSA_BACSU : 38- 51: ivpvk RSHSVCAQGGingA vntkg DHSA_BOVIN : 98- 110: klfpt RSHTVAAQGGin-A algnm DHSA_BOVIN : 98- 111: klfpt RSHTVAAQGGinaA lgnme DHSA_ECOLI : 43- 56: kvfpt RSHTVSAQGGitvA lgnth DHSA_HUMAN : 97- 109: klfpt RSHTVAAQGGin-A algnm DHSA_HUMAN : 97- 110: klfpt RSHTVAAQGGinaA lgnme DHSA_RICPR : 47- 59: kifpt RSHTVAAQGGis-A algnm DHSA_RICPR : 47- 60: kifpt RSHTVAAQGGisaA lgnmg DHSA_YEAST : 88- 100: klfpt RSHTVAAQGGin-A algnm DHSA_YEAST : 88- 101: klfpt RSHTVAAQGGinaA lgnmh FRDA_ECOLI : 42- 54: kvypm RSHTVAAEGGsa-A vaqdh FRDA_HAEIN : 43- 55: kvypm RTHTVAAEGGaa-A vikee FRDA_PROVU : 43- 55: kvypm RSHTVAAEGGsa-A vtqah FRDA_WOLSU : 41- 53: lipvk RSHSAAAQGGmq-A slgns K 11: 39.0202 10( 10) G-x(0,1)-L-[ILMV]-T-x(0,2)-E-G-x-[ER]-x(2)-G-[AG]-x-L-x-[DNR] Occurences: 10(10) DHSA_BACSU : 149- 166: ryeva G-LVTkyEGwEflGAvLdD drtcr DHSA_BOVIN : 305- 321: giyga GcLIT--EGcRgeGGiLiN sqger DHSA_ECOLI : 250- 266: giaga GvLVT--EGcRgeGGyLlN khger DHSA_HUMAN : 304- 320: giyga GcLIT--EGcRgeGGiLiN sqger DHSA_RICPR : 254- 270: giysa GcLIT--EGaRgeGGyLvN anger DHSA_YEAST : 295- 311: giygs GcLIT--EGaRgeGGfLvN seger FRDA_ECOLI : 240- 256: glpgs GiLMT--EGcRgeGGiLvN kngyr FRDA_HAEIN : 241- 257: glpnt GiLMT--EGcRgeGGiLvN kdgyr FRDA_PROVU : 241- 257: glpgs GiLMT--EGcRgeGGiLvN kdgyr FRDA_WOLSU : 265- 281: plfps GiLLT--EGcRgdGGiLrR cgwtp L 12: 38.7787 10( 10) R-x-E-S-R-G-[AG]-x(2)-[KR]-x-D-x(3,5)-R-x-D Occurences: 10(10) DHSA_BACSU : 524- 541: lgayn RnESRGAhyKpDype--RnD dewlk DHSA_BOVIN : 585- 602: ygaea RkESRGGprReDfke--RvD eydys DHSA_ECOLI : 533- 550: vsanf RtESRGAhsRfDfpd--RdD enwlc DHSA_HUMAN : 585- 602: ygaea RkESRGAhaReDykv--RiD eydys DHSA_RICPR : 536- 553: csaaa RkESRGAhaReDypd--RnD rdwik DHSA_YEAST : 578- 595: vsaan RkESRGAhaReDypn--RdD ehwmk FRDA_ECOLI : 525- 544: hsama RkESRGAhqRlDegcteRdD vnflk FRDA_HAEIN : 527- 544: nsaie RkESRGAhqRlDyte--RdD vnylk FRDA_PROVU : 526- 545: hsafn RkESRGAhqRlDegcteRdD vnflk FRDA_WOLSU : 540- 557: kgald RtESRGAhnReDypk--RdD inwln M 13: 35.3501 10( 10) L-[ILMV]-T-x(0,2)-E-G-x-[ER]-x(2)-G-[AG]-x-L-x-[DNR] Occurences: 10(10) DHSA_BACSU : 150- 166: yevag LVTkyEGwEflGAvLdD drtcr DHSA_BOVIN : 307- 321: ygagc LIT--EGcRgeGGiLiN sqger DHSA_ECOLI : 252- 266: agagv LVT--EGcRgeGGyLlN khger DHSA_HUMAN : 306- 320: ygagc LIT--EGcRgeGGiLiN sqger DHSA_RICPR : 256- 270: ysagc LIT--EGaRgeGGyLvN anger DHSA_YEAST : 297- 311: ygsgc LIT--EGaRgeGGfLvN seger FRDA_ECOLI : 242- 256: pgsgi LMT--EGcRgeGGiLvN kngyr FRDA_HAEIN : 243- 257: pntgi LMT--EGcRgeGGiLvN kdgyr FRDA_PROVU : 243- 257: pgsgi LMT--EGcRgeGGiLvN kdgyr FRDA_WOLSU : 267- 281: fpsgi LLT--EGcRgdGGiLrR cgwtp N 14: 34.6086 10( 10) E-S-R-G-[AG]-x(2)-[KR]-x-D-x(3,5)-R-x-D Occurences: 10(10) DHSA_BACSU : 526- 541: aynrn ESRGAhyKpDype--RnD dewlk DHSA_BOVIN : 587- 602: aeark ESRGGprReDfke--RvD eydys DHSA_ECOLI : 535- 550: anfrt ESRGAhsRfDfpd--RdD enwlc DHSA_HUMAN : 587- 602: aeark ESRGAhaReDykv--RiD eydys DHSA_RICPR : 538- 553: aaark ESRGAhaReDypd--RnD rdwik DHSA_YEAST : 580- 595: aanrk ESRGAhaReDypn--RdD ehwmk FRDA_ECOLI : 527- 544: amark ESRGAhqRlDegcteRdD vnflk FRDA_HAEIN : 529- 544: aierk ESRGAhqRlDyte--RdD vnylk FRDA_PROVU : 528- 545: afnrk ESRGAhqRlDegcteRdD vnflk FRDA_WOLSU : 542- 557: aldrt ESRGAhnReDypk--RdD inwln O 15: 33.7031 10( 10) E-[GS]-[AC]-R-G-[DE]-G-G-x-[LV] Occurences: 10(10) DHSA_BACSU : 250- 259: lrlms ESARGEGGrV wtykd DHSA_BOVIN : 310- 319: gclit EGCRGEGGiL insqg DHSA_ECOLI : 255- 264: gvlvt EGCRGEGGyL lnkhg DHSA_HUMAN : 309- 318: gclit EGCRGEGGiL insqg DHSA_RICPR : 259- 268: gclit EGARGEGGyL vnang DHSA_YEAST : 300- 309: gclit EGARGEGGfL vnseg FRDA_ECOLI : 245- 254: gilmt EGCRGEGGiL vnkng FRDA_HAEIN : 246- 255: gilmt EGCRGEGGiL vnkdg FRDA_PROVU : 246- 255: gilmt EGCRGEGGiL vnkdg FRDA_WOLSU : 270- 279: gillt EGCRGDGGiL rrcgw P 16: 30.4386 10( 10) S-R-G-[AG]-x(2)-[KR]-x-D-x(3,5)-R-x-D Occurences: 10(10) DHSA_BACSU : 527- 541: ynrne SRGAhyKpDype--RnD dewlk DHSA_BOVIN : 588- 602: earke SRGGprReDfke--RvD eydys DHSA_ECOLI : 536- 550: nfrte SRGAhsRfDfpd--RdD enwlc DHSA_HUMAN : 588- 602: earke SRGAhaReDykv--RiD eydys DHSA_RICPR : 539- 553: aarke SRGAhaReDypd--RnD rdwik DHSA_YEAST : 581- 595: anrke SRGAhaReDypn--RdD ehwmk FRDA_ECOLI : 528- 544: marke SRGAhqRlDegcteRdD vnflk FRDA_HAEIN : 530- 544: ierke SRGAhqRlDyte--RdD vnylk FRDA_PROVU : 529- 545: fnrke SRGAhqRlDegcteRdD vnflk FRDA_WOLSU : 543- 557: ldrte SRGAhnReDypk--RdD inwln Q 17: 26.6821 11( 10) R-x(1,3)-G-x-[ILV]-x(2)-R-x-F-G-G Occurences: 11(10) DHSA_BACSU : 104- 117: avmfn RtpeGlLdfRrFGG tqhhr DHSA_BOVIN : 163- 176: gmpfs RtedGkIyqRaFGG qslkf DHSA_ECOLI : 108- 121: glpfs RlddGrIyqRpFGG qsknf DHSA_HUMAN : 162- 175: gmpfs RtedGkIyqRaFGG qslkf DHSA_RICPR : 112- 125: gvpfs RtvdGkIyqRpFGG mttey DHSA_YEAST : 153- 166: gvpfs RtenGkIyqRaFGG qtkey FRDA_ECOLI : 105- 118: gcpws RrpdGsVnvRrFGG mkier FRDA_ECOLI : 106- 118: cpwsr Rpd-GsVnvRrFGG mkier FRDA_HAEIN : 106- 119: gcpws RkadGdVnvRrFGG mkier FRDA_PROVU : 106- 119: gcpws RkedGsVnvRrFGG mkier FRDA_WOLSU : 132- 143: teedf Rh--GlIhsRdFGG tkkwr R 18: 26.1503 10( 10) R-x(1,3)-E-S-x(0,1)-R-G-[AEG]-x(2)-R Occurences: 10(10) DHSA_BACSU : 246- 258: gddkl RlmsESaRGEggR vwtyk DHSA_BOVIN : 585- 594: ygaea Rk--ES-RGGprR edfke DHSA_ECOLI : 533- 542: vsanf Rt--ES-RGAhsR fdfpd DHSA_HUMAN : 585- 594: ygaea Rk--ES-RGAhaR edykv DHSA_RICPR : 536- 545: csaaa Rk--ES-RGAhaR edypd DHSA_YEAST : 578- 587: vsaan Rk--ES-RGAhaR edypn FRDA_ECOLI : 525- 534: hsama Rk--ES-RGAhqR ldegc FRDA_HAEIN : 527- 536: nsaie Rk--ES-RGAhqR ldyte FRDA_PROVU : 526- 535: hsafn Rk--ES-RGAhqR ldegc FRDA_WOLSU : 540- 549: kgald Rt--ES-RGAhnR edypk S 19: 23.5203 10( 10) R-x(1,3)-E-S-x(0,1)-R-G-x(3)-R Occurences: 10(10) DHSA_BACSU : 246- 258: gddkl RlmsESaRGeggR vwtyk DHSA_BOVIN : 585- 594: ygaea Rk--ES-RGgprR edfke DHSA_ECOLI : 533- 542: vsanf Rt--ES-RGahsR fdfpd DHSA_HUMAN : 585- 594: ygaea Rk--ES-RGahaR edykv DHSA_RICPR : 536- 545: csaaa Rk--ES-RGahaR edypd DHSA_YEAST : 578- 587: vsaan Rk--ES-RGahaR edypn FRDA_ECOLI : 525- 534: hsama Rk--ES-RGahqR ldegc FRDA_HAEIN : 527- 536: nsaie Rk--ES-RGahqR ldyte FRDA_PROVU : 526- 535: hsafn Rk--ES-RGahqR ldegc FRDA_WOLSU : 540- 549: kgald Rt--ES-RGahnR edypk T 20: 23.5121 10( 10) G-x-[ILV]-x(2)-R-x-F-G-G Occurences: 10(10) DHSA_BACSU : 108- 117: nrtpe GlLdfRrFGG tqhhr DHSA_BOVIN : 167- 176: srted GkIyqRaFGG qslkf DHSA_ECOLI : 112- 121: srldd GrIyqRpFGG qsknf DHSA_HUMAN : 166- 175: srted GkIyqRaFGG qslkf DHSA_RICPR : 116- 125: srtvd GkIyqRpFGG mttey DHSA_YEAST : 157- 166: srten GkIyqRaFGG qtkey FRDA_ECOLI : 109- 118: srrpd GsVnvRrFGG mkier FRDA_HAEIN : 110- 119: srkad GdVnvRrFGG mkier FRDA_PROVU : 110- 119: srked GsVnvRrFGG mkier FRDA_WOLSU : 134- 143: edfrh GlIhsRdFGG tkkwr Number of patterns evaluated by Pratt:21405 Total running time: 23 seconds